Investigation Title	TCGA Analysis of SNP Array Data for Acute Myeloid Leukemia Using Affymetrix GenomeWideSNP version 6							
Experimental Design	disease_state_design							
Experimental Design Term Source REF	MGED Ontology							
Experimental Factor Name	Acute Myeloid Leukemia							
Experimental Factor Type	disease_state							
Experimental Factor Type Term Source REF	MGED Ontology							
								
Person Last Name	Ley	Miller	Leong					
Person First Name	Tim	Christopher	Shin					
Person Mid Initials								
Person Email	tley@dom.wustl.edu	cmiller@genome.wustl.edu	sleong@genome.wustl.edu					
Person Phone	314.286.1976	314.286.1976	(314) 286-1800					
Person Fax								
Person Address	4444 Forest Park Ave, St. Louis, MO 63108	4444 Forest Park Ave, St. Louis, MO 63108	Campus Box 8501, 4444 Forest Park Ave, St. Louis, MO 63108					
Person Affiliation	Washington University in St. Louis	Washington University in St. Louis	Genome Center Washington University in St. Louis					
Person Roles	investigator	submitter	submitter					
Person Roles Term Source REF	MGED Ontology	MGED Ontology	MGED Ontology					
								
Quality Control Types	spike_quality_control							
Quality Control Types Term Source REF	MGED Ontology							
Date of Experiment								
Public Release Date								
								
PubMed ID								
Experiment Description	TCGA Analysis of SNP Array Data for Acute Myeloid Leukemia Using Affymetrix GenomeWideSNP version 6							
								
Protocol Name	genome.wustl.edu:labeling:Genome_Wide_SNP_6:01	genome.wustl.edu:hybridization:Genome_Wide_SNP_6:01	genome.wustl.edu:image_acquisition:Genome_Wide_SNP_6:01	genome.wustl.edu:intensities:Genome_Wide_SNP_6:01	genome.wustl.edu:genotype_genotype:Genome_Wide_SNP_6:01	genome.wustl.edu:copynumber_byallele:Genome_Wide_SNP_6:01	genome.wustl.edu:paired_copy_number:Genome_Wide_SNP_6:01	genome.wustl.edu:segmented_cna:Genome_Wide_SNP_6:01
Protocol Type	labeling	hybridization	image_acquisition	intensitites	genotype	copynumber_byallele	paired_copynumber	segmented_cna
Protocol Description	https://www.affymetrix.com/support/file_download.affx?onloadforward=/support/downloads/manuals/expression_print_manual.zip	https://www.affymetrix.com/support/file_download.affx?onloadforward=/support/downloads/manuals/expression_print_manual.zip	https://www.affymetrix.com/support/file_download.affx?onloadforward=/support/downloads/manuals/expression_print_manual.zip	See DESCRIPTION.txt	See DESCRIPTION.txt	See DESCRIPTION.txt	See DESCRIPTION.txt	See DESCRIPTION.txt
Protocol Parameters								
Protocol Hardware	liquid_handler	hybridization_station	array_scanner					
Protocol Software			Affymetrix GeneChip Operating Software Version 1.4	Partek	Partek	Partek	Partek	Partek
Protocol Contact	https://www.affymetrix.com/	https://www.affymetrix.com/	https://www.affymetrix.com/	http://www.partek.com	http://www.partek.com	http://www.partek.com	http://www.partek.com	http://bioinformatics.oxfordjournals.org/content/23/6/657.long
Protocol Term Source REF	MGED Ontology	MGED Ontology	MGED Ontology	Partek	Partek	Partek	Partek	CBS
								
SDRF Files	genome.wustl.edu_LAML.Genome_Wide_SNP_6.1.sdrf.txt							
								
Term Source Name	MGED Ontology	caArray	BCR	Affymetrix	Partek	CBS		
Term Source File	http://mged.sourceforge.net/ontologies/MGEDontology.php	http://caarraydb.nci.nih.gov/	http://www.intgen.org	https://www.affymetrix.com/	http://www.partek.com	http://bioinformatics.oxfordjournals.org/content/23/6/657.long		
Term Source Version	1.3.1.1	1.4	1	1	6.5	1.24.0		
