tcga_id gene_fusion_name type donor_gene acceptor_gene chromosomes donor_end acceptor_start coverage strand entropy paired_reads left_paired_reads right_paired_reads unique_paired_reads bridging_read_pairs TCGA-DX-A6BE-01A-41R-A32Q-07 A2M~Nchr12~9211463 intergenic "A2M," "-," chr12~chr12 9220779 9211463 5 -+ 1.332179 5 1 4 5 38 TCGA-DX-A6BE-01A-41R-A32Q-07 ARID2~PTPRB fusion "ARID2," "PTPRB," chr12~chr12 46125097 70933802 7 +- 1.549826 6 6 0 6 26 TCGA-DX-A6BE-01A-41R-A32Q-07 C9orf41~KIF21A fusion "C9orf41," "KIF21A," chr9~chr12 77642928 39764063 2 -- 0.693147 2 2 0 2 4 TCGA-DX-A6BE-01A-41R-A32Q-07 CCT2~Nchr12~58816253 intergenic "CCT2," "-," chr12~chr12 69980598 58816253 11 +- 1.893788 11 8 3 11 14 TCGA-DX-A6BE-01A-41R-A32Q-07 CCT2~Nchr12~58836202 intergenic "CCT2," "-," chr12~chr12 69980598 58836202 357 +- 3.22397 349 211 138 349 626 TCGA-DX-A6BE-01A-41R-A32Q-07 CD63~COL3A1 fusion "CD63," "COL3A1," chr12~chr2 56119343 189867718 2 -+ 0.693147 2 1 1 2 8 TCGA-DX-A6BE-01A-41R-A32Q-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94037159 8 -+ 0.37677 8 8 0 8 2 TCGA-DX-A6BE-01A-41R-A32Q-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266809 94039751 3 -+ 1.098612 1 0 1 1 2 TCGA-DX-A6BE-01A-41R-A32Q-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271969 94039767 3 -+ 0.636514 3 2 1 3 2 TCGA-DX-A6BE-01A-41R-A32Q-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271934 94055125 2 -+ 0.693147 2 2 0 2 2 TCGA-DX-A6BE-01A-41R-A32Q-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48263139 94058608 2 -+ 0.693147 1 0 1 1 42 TCGA-DX-A6BE-01A-41R-A32Q-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272795 189859032 11 -+ 0.759547 11 11 0 11 4 TCGA-DX-A6BE-01A-41R-A32Q-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48271312 189859541 5 -+ 1.05492 3 1 2 3 4 TCGA-DX-A6BE-01A-41R-A32Q-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268836 189862999 5 -+ 1.332179 5 1 4 5 2 TCGA-DX-A6BE-01A-41R-A32Q-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272828 189870076 4 -+ 0.562335 2 1 1 2 2 TCGA-DX-A6BE-01A-41R-A32Q-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272828 189870095 8 -+ 1.494175 3 1 2 3 2 TCGA-DX-A6BE-01A-41R-A32Q-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265237 189871089 8 -+ 1.213008 5 4 1 5 14 TCGA-DX-A6BE-01A-41R-A32Q-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189858808 48270054 2 +- 0.693147 2 0 2 2 2 TCGA-DX-A6BE-01A-41R-A32Q-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189867077 94048810 5 ++ 0.950271 5 1 4 5 8 TCGA-DX-A6BE-01A-41R-A32Q-07 COL5A3~Nchr9~82884651 intergenic "COL5A3," "-," chr19~chr9 10076990 82884651 9 -- 1.735126 8 2 6 8 2 TCGA-DX-A6BE-01A-41R-A32Q-07 CPSF4~RP11-762I7.5 fusion "CPSF4," "RP11-762I7.5,SARNP," chr7~chr12 99040711 56184376 5 +- 1.332179 5 4 1 5 326 TCGA-DX-A6BE-01A-41R-A32Q-07 DAPK1~Nchr16~86995575 intergenic "DAPK1," "-," chr9~chr16 90296541 86995575 8 +- 1.494175 8 1 7 8 6 TCGA-DX-A6BE-01A-41R-A32Q-07 DAPK1~Nchr16~87054447 intergenic "DAPK1," "-," chr9~chr16 90296541 87054447 12 +- 1.583258 12 3 9 12 30 TCGA-DX-A6BE-01A-41R-A32Q-07 DAPK1~Nchr16~87095969 intergenic "DAPK1," "-," chr9~chr16 90296541 87095969 84 +- 2.447681 84 27 57 84 164 TCGA-DX-A6BE-01A-41R-A32Q-07 DCTN2~Nchr12~66139180 intergenic "DCTN2," "-," chr12~chr12 57939811 66139180 8 -+ 1.906155 8 6 2 8 32 TCGA-DX-A6BE-01A-41R-A32Q-07 DCTN2~Nchr12~66167018 intergenic "DCTN2," "-," chr12~chr12 57939811 66167018 37 -+ 2.374193 34 20 14 34 104 TCGA-DX-A6BE-01A-41R-A32Q-07 DNMT1~RP11-395D3.1 fusion "DNMT1," "RP11-395D3.1," chr19~chr9 10277274 89311048 8 -+ 1.906155 7 0 7 7 6 TCGA-DX-A6BE-01A-41R-A32Q-07 EDF1~Nchr9~139760751 intergenic "EDF1," "-," chr9~chr9 139758307 139760751 2 +- 0.693147 2 2 0 2 36 TCGA-DX-A6BE-01A-41R-A32Q-07 FRS2~Nchr12~58047759 intergenic "FRS2," "-," chr12~chr12 69925836 58047759 11 ++ 1.594167 5 1 4 5 10 TCGA-DX-A6BE-01A-41R-A32Q-07 GIGYF2~EEF1B2 fusion "GIGYF2," "EEF1B2," chr2~chr2 233594854 207024743 4 ++ 1.386294 2 2 0 2 14 TCGA-DX-A6BE-01A-41R-A32Q-07 GNS~Nchr12~68009638 intergenic "GNS," "-," chr12~chr12 65141492 68009638 44 -- 2.580577 42 30 12 42 184 TCGA-DX-A6BE-01A-41R-A32Q-07 GNS~Nchr12~68012520 intergenic "GNS," "-," chr12~chr12 65141492 68012520 3 -- 1.098612 3 2 1 3 188 TCGA-DX-A6BE-01A-41R-A32Q-07 GNS~Nchr12~75354725 intergenic "GNS," "-," chr12~chr12 65141492 75354725 5 -- 1.609438 4 1 3 4 128 TCGA-DX-A6BE-01A-41R-A32Q-07 GNS~Nchr12~75354883 intergenic "GNS," "-," chr12~chr12 65141492 75354883 26 -- 2.544824 26 13 13 26 306 TCGA-DX-A6BE-01A-41R-A32Q-07 GNS~Nchr12~75356394 intergenic "GNS," "-," chr12~chr12 65141492 75356394 373 -- 3.124525 370 231 121 370 662 TCGA-DX-A6BE-01A-41R-A32Q-07 GNS~Nchr12~75919981 intergenic "GNS," "-," chr12~chr12 65141492 75919981 86 -+ 2.614146 80 18 62 80 270 TCGA-DX-A6BE-01A-41R-A32Q-07 GNS~Nchr12~75928938 intergenic "GNS," "-," chr12~chr12 65141492 75928938 133 -+ 2.297557 125 90 35 125 212 TCGA-DX-A6BE-01A-41R-A32Q-07 GNS~Nchr12~75928948 intergenic "GNS," "-," chr12~chr12 65141492 75928948 12 -+ 1.979205 12 7 5 12 168 TCGA-DX-A6BE-01A-41R-A32Q-07 GNS~Nchr12~75929051 intergenic "GNS," "-," chr12~chr12 65141492 75929051 5 -+ 1.05492 5 0 5 5 58 TCGA-DX-A6BE-01A-41R-A32Q-07 GNS~RP11-335O4.1 fusion "GNS," "RP11-335O4.1," chr12~chr12 65141492 67981086 28 -- 2.512325 22 11 11 22 28 TCGA-DX-A6BE-01A-41R-A32Q-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31236835 31322301 2 -- 0.693147 2 0 2 2 384 TCGA-DX-A6BE-01A-41R-A32Q-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 685 -- 2.302921 685 684 1 685 436 TCGA-DX-A6BE-01A-41R-A32Q-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238905 31324034 3 -- 1.098612 1 1 0 1 126 TCGA-DX-A6BE-01A-41R-A32Q-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 1694 -- 2.544828 1491 475 1012 1491 606 TCGA-DX-A6BE-01A-41R-A32Q-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489804 32552102 3 -- 1.098612 1 0 1 1 2342 TCGA-DX-A6BE-01A-41R-A32Q-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489818 32552111 35 -- 2.37603 16 0 16 16 2270 TCGA-DX-A6BE-01A-41R-A32Q-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489810 32552130 2 -- 0.693147 2 0 2 2 2330 TCGA-DX-A6BE-01A-41R-A32Q-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32497902 32552155 56 -- 2.6702 14 3 11 14 84 TCGA-DX-A6BE-01A-41R-A32Q-07 HMGA2~C1orf87 fusion "HMGA2," "C1orf87," chr12~chr1 66232349 60463488 2 +- 0.693147 2 1 1 2 10 TCGA-DX-A6BE-01A-41R-A32Q-07 HN1~Nchr2~174296244 intergenic "HN1," "-," chr17~chr2 73143651 174296244 30 -- 1.32295 18 18 0 18 2 TCGA-DX-A6BE-01A-41R-A32Q-07 KCNMB4~Nchr17~8084717 intergenic "KCNMB4," "-," chr12~chr17 70760850 8084717 7 ++ 1.747868 6 5 1 6 14 TCGA-DX-A6BE-01A-41R-A32Q-07 KCNMB4~Nchr9~90892791 intergenic "KCNMB4," "-," chr12~chr9 70760850 90892791 5 +- 1.332179 5 1 4 5 20 TCGA-DX-A6BE-01A-41R-A32Q-07 KCNMB4~Nchr9~90893296 intergenic "KCNMB4," "-," chr12~chr9 70760850 90893296 7 +- 1.475076 7 2 5 7 56 TCGA-DX-A6BE-01A-41R-A32Q-07 KCNMB4~Nchr9~90893299 intergenic "KCNMB4," "-," chr12~chr9 70760850 90893299 14 +- 1.809514 12 9 3 12 56 TCGA-DX-A6BE-01A-41R-A32Q-07 LEMD3~LYZ fusion "LEMD3," "LYZ," chr12~chr12 65564898 69743888 147 ++ 3.078918 141 69 72 141 160 TCGA-DX-A6BE-01A-41R-A32Q-07 LEMD3~LYZ fusion "LEMD3," "LYZ," chr12~chr12 65564898 69746000 7 ++ 1.475076 7 1 6 7 18 TCGA-DX-A6BE-01A-41R-A32Q-07 LEMD3~LYZ fusion "LEMD3," "LYZ," chr12~chr12 65564898 69746933 6 ++ 1.011404 6 0 6 6 8 TCGA-DX-A6BE-01A-41R-A32Q-07 NAP1L1~OSTF1 fusion "NAP1L1," "OSTF1," chr12~chr9 76478347 77752454 95 -+ 2.80256 92 6 86 92 950 TCGA-DX-A6BE-01A-41R-A32Q-07 NAP1L1~OSTF1 fusion "NAP1L1," "OSTF1," chr12~chr9 76467983 77752454 360 -+ 2.762865 336 151 185 336 1830 TCGA-DX-A6BE-01A-41R-A32Q-07 NAP1L1~OSTF1 fusion "NAP1L1," "OSTF1," chr12~chr9 76478347 77755750 4 -+ 1.039721 4 0 4 4 238 TCGA-DX-A6BE-01A-41R-A32Q-07 NAP1L1~OSTF1 fusion "NAP1L1," "OSTF1," chr12~chr9 76467983 77761599 2 -+ 0.693147 2 1 1 2 104 TCGA-DX-A6BE-01A-41R-A32Q-07 Nchr10~86320576~Nchr10~86320784 intergenic "-," "-," chr10~chr10 86320576 86320784 3 -- 0.636514 3 3 0 3 50 TCGA-DX-A6BE-01A-41R-A32Q-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 45 -+ 2.440655 26 0 26 26 14 TCGA-DX-A6BE-01A-41R-A32Q-07 Nchr12~104659073~Nchr12~104659181 intergenic "-," "-," chr12~chr12 104659073 104659181 3 -- 1.098612 3 2 1 3 18 TCGA-DX-A6BE-01A-41R-A32Q-07 Nchr12~113828111~Nchr12~113828234 intergenic "-," "-," chr12~chr12 113828111 113828234 6 -- 0.867563 6 4 2 6 2 TCGA-DX-A6BE-01A-41R-A32Q-07 Nchr12~49223828~Nchr12~49223734 intergenic "-," "-," chr12~chr12 49223828 49223734 4 ++ 1.039721 4 4 0 4 4 TCGA-DX-A6BE-01A-41R-A32Q-07 Nchr12~56124562~Nchr12~56124537 intergenic "-," "-," chr12~chr12 56124562 56124537 13 ++ 1.156988 13 13 0 13 6 TCGA-DX-A6BE-01A-41R-A32Q-07 Nchr12~61215340~CSMD1 intergenic "-," "CSMD1," chr12~chr8 61215340 2820161 12 -- 2.138333 9 1 8 9 10 TCGA-DX-A6BE-01A-41R-A32Q-07 Nchr12~67372798~Nchr12~73522941 intergenic "-," "-," chr12~chr12 67372798 73522941 3 +- 1.098612 2 1 1 2 4 TCGA-DX-A6BE-01A-41R-A32Q-07 Nchr16~86995369~MDM1 intergenic "-," "MDM1," chr16~chr12 86995369 68715408 7 -- 1.078992 7 0 7 7 14 TCGA-DX-A6BE-01A-41R-A32Q-07 Nchr17~62400585~Nchr17~62400475 intergenic "-," "-," chr17~chr17 62400585 62400475 2 ++ 0.693147 2 2 0 2 2 TCGA-DX-A6BE-01A-41R-A32Q-07 Nchr19~50223193~RPS9 intergenic "-," "RPS9," chr19~chr19 50223193 54710191 2 -- 0.693147 2 0 2 2 222 TCGA-DX-A6BE-01A-41R-A32Q-07 Nchr19~50223254~RPS9 intergenic "-," "RPS9," chr19~chr19 50223254 54704726 4 ++ 1.386294 2 0 2 2 52 TCGA-DX-A6BE-01A-41R-A32Q-07 Nchr1~51623362~CFL1 intergenic "-," "CFL1," chr1~chr11 51623362 65622526 3 ++ 0.636514 3 0 3 3 2 TCGA-DX-A6BE-01A-41R-A32Q-07 Nchr1~569174~OS9 intergenic "-," "OS9,RP11-571M6.7," chr1~chr12 569174 58115031 2 -+ 0.693147 2 1 1 2 2 TCGA-DX-A6BE-01A-41R-A32Q-07 Nchr20~34634465~Nchr20~34634571 intergenic "-," "-," chr20~chr20 34634465 34634571 3 -- 1.098612 3 0 3 3 2 TCGA-DX-A6BE-01A-41R-A32Q-07 Nchr20~48122031~Nchr20~48122195 intergenic "-," "-," chr20~chr20 48122031 48122195 2 -- 0.693147 2 1 1 2 2 TCGA-DX-A6BE-01A-41R-A32Q-07 Nchr2~177065909~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065909 177065788 5 ++ 0.500402 5 0 5 5 22 TCGA-DX-A6BE-01A-41R-A32Q-07 Nchr2~177065915~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065915 177065788 7 ++ 1.277034 7 0 7 7 32 TCGA-DX-A6BE-01A-41R-A32Q-07 Nchr3~112315750~Nchr3~112315859 intergenic "-," "-," chr3~chr3 112315750 112315859 2 -- 0.693147 2 0 2 2 34 TCGA-DX-A6BE-01A-41R-A32Q-07 Nchr3~112316463~Nchr3~112316311 intergenic "-," "-," chr3~chr3 112316463 112316311 2 ++ 0.693147 2 0 2 2 2 TCGA-DX-A6BE-01A-41R-A32Q-07 Nchr6~144522084~TPT1 intergenic "-," "TPT1," chr6~chr13 144522084 45914858 5 +- 1.05492 3 3 0 3 132 TCGA-DX-A6BE-01A-41R-A32Q-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 15 ++ 2.061113 11 11 0 11 28 TCGA-DX-A6BE-01A-41R-A32Q-07 Nchr6~29855766~HLA-C intergenic "-," "HLA-C," chr6~chr6 29855766 31239559 2 -- 0.693147 1 0 1 1 42 TCGA-DX-A6BE-01A-41R-A32Q-07 Nchr9~85833797~PCSK5 intergenic "-," "PCSK5," chr9~chr9 85833797 78947921 11 -- 1.972247 8 3 5 8 68 TCGA-DX-A6BE-01A-41R-A32Q-07 OSTF1~Nchr12~73362033 intergenic "OSTF1," "-," chr9~chr12 77742535 73362033 4 ++ 1.386294 4 1 3 4 8 TCGA-DX-A6BE-01A-41R-A32Q-07 PCSK5~Nchr9~85824373 intergenic "PCSK5," "-," chr9~chr9 78953363 85824373 4 ++ 0.562335 3 3 0 3 20 TCGA-DX-A6BE-01A-41R-A32Q-07 PCSK5~RAB3IP fusion "PCSK5," "RAB3IP," chr9~chr12 78506289 70178500 133 ++ 2.961824 130 45 85 130 392 TCGA-DX-A6BE-01A-41R-A32Q-07 PCSK5~RAB3IP fusion "PCSK5," "RAB3IP," chr9~chr12 78506289 70188217 32 ++ 2.73199 31 5 26 31 134 TCGA-DX-A6BE-01A-41R-A32Q-07 PFAS~Nchr17~14456661 intergenic "PFAS," "-," chr17~chr17 8161517 14456661 14 +- 1.908535 13 7 6 13 16 TCGA-DX-A6BE-01A-41R-A32Q-07 PFAS~Nchr17~14456807 intergenic "PFAS," "-," chr17~chr17 8161517 14456807 74 +- 2.72844 71 26 45 71 132 TCGA-DX-A6BE-01A-41R-A32Q-07 R3HDM2~Nchr12~70330540 intergenic "R3HDM2," "-," chr12~chr12 57686355 70330540 5 -- 0.673012 3 0 3 3 176 TCGA-DX-A6BE-01A-41R-A32Q-07 R3HDM2~Nchr12~70332230 intergenic "R3HDM2," "-," chr12~chr12 57689182 70332230 8 -- 1.386294 8 5 3 8 16 TCGA-DX-A6BE-01A-41R-A32Q-07 R3HDM2~Nchr12~70332230 intergenic "R3HDM2," "-," chr12~chr12 57686355 70332230 116 -- 3.042582 108 17 89 108 154 TCGA-DX-A6BE-01A-41R-A32Q-07 R3HDM2~Nchr9~89369885 intergenic "R3HDM2," "-," chr12~chr9 57686355 89369885 33 -+ 2.656329 29 6 23 29 98 TCGA-DX-A6BE-01A-41R-A32Q-07 R3HDM2~Nchr9~89369885 intergenic "R3HDM2," "-," chr12~chr9 57689182 89369885 54 -+ 1.998527 53 4 49 53 74 TCGA-DX-A6BE-01A-41R-A32Q-07 R3HDM2~Nchr9~89382371 intergenic "R3HDM2," "-," chr12~chr9 57686355 89382371 30 -+ 2.329949 30 2 28 30 54 TCGA-DX-A6BE-01A-41R-A32Q-07 R3HDM2~Nchr9~89382371 intergenic "R3HDM2," "-," chr12~chr9 57689182 89382371 35 -+ 2.15954 35 2 33 35 22 TCGA-DX-A6BE-01A-41R-A32Q-07 R3HDM2~Nchr9~89394578 intergenic "R3HDM2," "-," chr12~chr9 57686355 89394578 3 -+ 1.098612 3 0 3 3 4 TCGA-DX-A6BE-01A-41R-A32Q-07 RP1-34H18.1~Nchr12~65376838 intergenic "RP1-34H18.1," "-," chr12~chr12 77718994 65376838 4 ++ 1.039721 4 2 2 4 4 TCGA-DX-A6BE-01A-41R-A32Q-07 RP11-335O4.1~Nchr9~90867476 intergenic "RP11-335O4.1," "-," chr12~chr9 67980936 90867476 19 -+ 2.305657 19 14 5 19 38 TCGA-DX-A6BE-01A-41R-A32Q-07 RP11-386G11.5~DIP2B fusion "RP11-386G11.5," "DIP2B," chr12~chr12 49392473 51034507 15 ++ 2.02623 5 2 3 5 22 TCGA-DX-A6BE-01A-41R-A32Q-07 RP11-571M6.15~Nchr12~74326908 intergenic "METTL21B,RP11-571M6.15," "-," chr12~chr12 58166911 74326908 2 ++ 0.693147 2 1 1 2 70 TCGA-DX-A6BE-01A-41R-A32Q-07 RP11-571M6.15~Nchr12~74326923 intergenic "METTL21B,RP11-571M6.15," "-," chr12~chr12 58166911 74326923 52 ++ 2.705741 48 11 37 48 70 TCGA-DX-A6BE-01A-41R-A32Q-07 RP11-81H14.2~Nchr9~92324560 intergenic "RP11-81H14.2," "-," chr12~chr9 68845147 92324560 5 -- 1.332179 5 5 0 5 16 TCGA-DX-A6BE-01A-41R-A32Q-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 7 ++ 1.351784 7 3 4 7 28 TCGA-DX-A6BE-01A-41R-A32Q-07 SEMA4D~Nchr9~83977637 intergenic "SEMA4D," "-," chr9~chr9 92112834 83977637 10 -- 1.834372 1 1 0 1 2 TCGA-DX-A6BE-01A-41R-A32Q-07 SLC7A2~Nchr9~90892791 intergenic "SLC7A2," "-," chr8~chr9 17359811 90892791 2 +- 0.693147 1 0 1 1 6 TCGA-DX-A6BE-01A-41R-A32Q-07 SLC7A2~Nchr9~90893296 intergenic "SLC7A2," "-," chr8~chr9 17359811 90893296 3 +- 1.098612 3 0 3 3 38 TCGA-DX-A6BE-01A-41R-A32Q-07 SLC7A2~Nchr9~90893299 intergenic "SLC7A2," "-," chr8~chr9 17359811 90893299 6 +- 0.867563 5 0 5 5 38 TCGA-DX-A6BE-01A-41R-A32Q-07 SLC7A8~Nchr9~84502820 intergenic "SLC7A8," "-," chr14~chr9 23612288 84502820 28 -- 2.143556 28 14 14 28 170 TCGA-DX-A6BE-01A-41R-A32Q-07 TLE1~Nchr12~67357519 intergenic "TLE1," "-," chr9~chr12 84267129 67357519 2 -+ 0.693147 2 1 1 2 34 TCGA-DX-A6BE-01A-41R-A32Q-07 TLE1~Nchr12~67357519 intergenic "TLE1," "-," chr9~chr12 84267099 67357519 5 -+ 1.609438 3 3 0 3 34 TCGA-DX-A6BE-01A-41R-A32Q-07 TLE1~Nchr12~67359416 intergenic "TLE1," "-," chr9~chr12 84267099 67359416 41 -+ 2.474627 30 23 7 30 342 TCGA-DX-A6BE-01A-41R-A32Q-07 TLE1~Nchr12~67359416 intergenic "TLE1," "-," chr9~chr12 84267129 67359416 8 -+ 1.732868 4 2 2 4 322 TCGA-DX-A6BE-01A-41R-A32Q-07 TLE1~Nchr12~67359533 intergenic "TLE1," "-," chr9~chr12 84267099 67359533 43 -+ 2.69345 34 13 21 34 298 TCGA-DX-A6BE-01A-41R-A32Q-07 TLE1~Nchr12~67359533 intergenic "TLE1," "-," chr9~chr12 84267129 67359533 62 -+ 2.818279 55 38 17 55 278 TCGA-DX-A6BE-01A-41R-A32Q-07 TLE1~Nchr12~67359561 intergenic "TLE1," "-," chr9~chr12 84267129 67359561 30 -+ 2.513822 18 12 6 18 224 TCGA-DX-A6BE-01A-41R-A32Q-07 TLE1~Nchr12~67359561 intergenic "TLE1," "-," chr9~chr12 84267099 67359561 17 -+ 2.141848 15 7 6 15 244 TCGA-DX-A6BE-01A-41R-A32Q-07 TLE1~Nchr12~67372680 intergenic "TLE1," "-," chr9~chr12 84267099 67372680 2 -+ 0.693147 1 0 1 1 4 TCGA-DX-A6BE-01A-41R-A32Q-07 TLE1~Nchr12~67417994 intergenic "TLE1," "-," chr9~chr12 84267099 67417994 25 -+ 2.456143 21 11 10 21 20 TCGA-DX-A6BE-01A-41R-A32Q-07 TLE1~Nchr12~67435905 intergenic "TLE1," "-," chr9~chr12 84267099 67435905 3 -+ 1.098612 1 1 0 1 20 TCGA-DX-A6BE-01A-41R-A32Q-07 TLE1~Nchr12~73522941 intergenic "TLE1," "-," chr9~chr12 84300591 73522941 5 -- 0.950271 5 1 4 5 20 TCGA-DX-A6BE-01A-41R-A32Q-07 TLE1~Nchr12~73522941 intergenic "TLE1," "-," chr9~chr12 84267099 73522941 79 -- 3.028715 65 11 54 65 310 TCGA-DX-A6BE-01A-41R-A32Q-07 TLE1~Nchr12~73522941 intergenic "TLE1," "-," chr9~chr12 84267129 73522941 103 -- 2.762801 78 25 53 78 276 TCGA-DX-A6BE-01A-41R-A32Q-07 ZCCHC6~OMA1 fusion "ZCCHC6," "OMA1," chr9~chr1 88955917 59004982 2 -- 0.693147 2 1 1 2 10 TCGA-DX-A6BE-01A-41R-A32Q-07 ZCCHC6~WIF1 fusion "ZCCHC6," "WIF1," chr9~chr12 88940249 65456356 7 -- 1.549826 7 4 3 7 6 TCGA-DX-A6BE-01A-41R-A32Q-07 ZNF562~Nchr9~83135391 intergenic "ZNF562," "-," chr19~chr9 9785691 83135391 10 -- 1.695743 10 0 10 10 4 TCGA-DX-A6BE-01A-41R-A32Q-07 ZNF562~Nchr9~83172127 intergenic "ZNF562," "-," chr19~chr9 9785691 83172127 12 -- 1.791759 4 0 4 4 12 TCGA-DX-A6BE-01A-41R-A32Q-07 ZNF562~SARNP fusion "ZNF562," "SARNP," chr19~chr12 9785691 56146624 11 -- 1.672625 11 11 0 11 24 TCGA-DX-A6BB-01A-12R-A32Q-07 DES~MYL9 fusion "DES,AC053503.6," "MYL9," chr2~chr20 220290808 35177926 3 -+ 0.636514 3 0 3 3 16 TCGA-DX-A6BB-01A-12R-A32Q-07 FLNC~Nchr7~128552847 intergenic "FLNC," "-," chr7~chr7 128498612 128552847 2 -- 0.693147 2 2 0 2 4 TCGA-DX-A6BB-01A-12R-A32Q-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 227 -- 2.311168 226 225 1 226 40 TCGA-DX-A6BB-01A-12R-A32Q-07 HSPB1~Nchr9~74622964 intergenic "HSPB1," "-," chr7~chr9 75932377 74622964 7 ++ 0.59827 3 3 0 3 50 TCGA-DX-A6BB-01A-12R-A32Q-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 31 -+ 2.559293 18 0 18 18 20 TCGA-DX-A6BB-01A-12R-A32Q-07 Nchr14~105058678~Nchr14~105058848 intergenic "-," "-," chr14~chr14 105058678 105058848 3 -- 0.636514 3 0 3 3 2 TCGA-DX-A6BB-01A-12R-A32Q-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 34 -+ 2.754229 31 16 15 31 176 TCGA-DX-A6BB-01A-12R-A32Q-07 Nchr1~16133999~UQCRH intergenic "-," "UQCRH," chr1~chr1 16133999 46775918 2 -- 0.693147 2 2 0 2 42 TCGA-DX-A6BB-01A-12R-A32Q-07 Nchr2~177065788~Nchr2~177065931 intergenic "-," "-," chr2~chr2 177065788 177065931 2 -- 0.693147 2 0 2 2 292 TCGA-DX-A6BB-01A-12R-A32Q-07 Nchr2~177065789~Nchr2~177065920 intergenic "-," "-," chr2~chr2 177065789 177065920 2 -- 0.693147 2 0 2 2 34 TCGA-DX-A6BB-01A-12R-A32Q-07 Nchr2~177065929~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065929 177065788 3 ++ 0.636514 3 0 3 3 292 TCGA-DX-A6BB-01A-12R-A32Q-07 Nchr2~45223806~KRTCAP2 intergenic "-," "KRTCAP2," chr2~chr1 45223806 155141996 5 -- 1.332179 1 1 0 1 10 TCGA-DX-A6BB-01A-12R-A32Q-07 Nchr5~148803960~C9orf3 intergenic "-," "C9orf3," chr5~chr9 148803960 97848964 5 ++ 1.05492 5 3 2 5 4 TCGA-DX-A6BB-01A-12R-A32Q-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 11 ++ 1.767761 10 7 3 10 42 TCGA-DX-A6BB-01A-12R-A32Q-07 NchrX~110764136~NchrX~110764235 intergenic "-," "-," chrX~chrX 110764136 110764235 2 -- 0.693147 2 2 0 2 6 TCGA-DX-A6BB-01A-12R-A32Q-07 NchrX~110765185~NchrX~110765266 intergenic "-," "-," chrX~chrX 110765185 110765266 2 -- 0.693147 2 2 0 2 22 TCGA-DX-A6BB-01A-12R-A32Q-07 PRDX5~Nchr3~73697612 intergenic "PRDX5," "-," chr11~chr3 64088219 73697612 2 -- 0.693147 1 1 0 1 190 TCGA-DX-A6BB-01A-12R-A32Q-07 PTMS~PCSK7 fusion "PTMS," "TAGLN,PCSK7," chr12~chr11 6879948 117075098 6 ++ 0.450561 5 1 4 5 6 TCGA-DX-A6BB-01A-12R-A32Q-07 RPS9~Nchr22~41460283 intergenic "RPS9," "-," chr19~chr22 54710159 41460283 3 +- 0.636514 3 2 1 3 28 TCGA-SG-A849-01A-11R-A355-07 AFF1~Nchr4~113431823 intergenic "AFF1," "-," chr4~chr4 87869723 113431823 2 ++ 0.693147 2 1 1 2 4 TCGA-SG-A849-01A-11R-A355-07 DOCK7~ADAM32 fusion "DOCK7," "ADAM32," chr1~chr8 63018403 39080559 2 -+ 0.693147 2 2 0 2 14 TCGA-SG-A849-01A-11R-A355-07 EIF3B~GDI2 fusion "EIF3B," "GDI2," chr7~chr10 2418877 5828013 13 +- 1.991509 13 8 5 13 12 TCGA-SG-A849-01A-11R-A355-07 FBN1~EIF3B fusion "FBN1," "EIF3B," chr15~chr7 48757752 2415024 3 -+ 1.098612 3 3 0 3 60 TCGA-SG-A849-01A-11R-A355-07 FBN1~EIF3B fusion "FBN1," "EIF3B," chr15~chr7 48757765 2415024 23 -+ 1.891319 23 10 13 23 66 TCGA-SG-A849-01A-11R-A355-07 GAS7~ATP8B4 fusion "GAS7," "ATP8B4," chr17~chr15 10101525 50273491 4 -- 1.386294 3 0 3 3 8 TCGA-SG-A849-01A-11R-A355-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32487941 32548633 371 -- 2.485298 108 2 106 108 20 TCGA-SG-A849-01A-11R-A355-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 2663 -- 2.539051 1139 354 776 1139 2 TCGA-SG-A849-01A-11R-A355-07 HLA-J~HLA-A fusion "HLA-J," "HLA-A," chr6~chr6 29977445 29913260 6 ++ 1.011404 6 6 0 6 2 TCGA-SG-A849-01A-11R-A355-07 IGLV1-50~IGLJ3 fusion "IGLV1-50," "IGLJ3," chr22~chr22 22682169 23247166 274 ++ 2.266046 198 0 196 198 426 TCGA-SG-A849-01A-11R-A355-07 MAD1L1~Nchr7~49536669 intergenic "MAD1L1," "-," chr7~chr7 2108829 49536669 14 -- 2.639057 12 5 7 12 28 TCGA-SG-A849-01A-11R-A355-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 54 -+ 2.242778 27 0 27 27 44 TCGA-SG-A849-01A-11R-A355-07 Nchr12~127650909~Nchr9~79186700 intergenic "-," "-," chr12~chr9 127650909 79186700 13 -- 0.271189 1 1 0 1 1250 TCGA-SG-A849-01A-11R-A355-07 Nchr14~58283422~SLC35F4 intergenic "-," "SLC35F4," chr14~chr14 58283422 58060842 7 -- 1.94591 7 1 6 7 12 TCGA-SG-A849-01A-11R-A355-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 63 -+ 2.772254 59 29 30 59 310 TCGA-SG-A849-01A-11R-A355-07 Nchr21~9827326~Nchr21~9827445 intergenic "-," "-," chr21~chr21 9827326 9827445 2 -- 0.693147 2 2 0 2 10 TCGA-SG-A849-01A-11R-A355-07 Nchr5~71146931~Nchr5~71146775 intergenic "-," "-," chr5~chr5 71146931 71146775 2 ++ 0.693147 1 1 0 1 6 TCGA-SG-A849-01A-11R-A355-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 10 ++ 2.163956 9 9 0 9 4 TCGA-SG-A849-01A-11R-A355-07 Nchr6~29901974~HLA-C intergenic "-," "HLA-C," chr6~chr6 29901974 31239083 4 -- 1.386294 3 0 3 3 40 TCGA-SG-A849-01A-11R-A355-07 RNF11~RP11-8P17.1 fusion "RNF11," "RP11-8P17.1," chr1~chr4 51735797 138949041 3 +- 1.098612 3 1 2 3 4 TCGA-SG-A849-01A-11R-A355-07 RNF11~RP11-8P17.1 fusion "RNF11," "RP11-8P17.1," chr1~chr4 51735797 138953670 10 +- 2.163956 10 7 3 10 20 TCGA-SG-A849-01A-11R-A355-07 RP11-215N21.1~Nchr10~109520633 intergenic "RP11-215N21.1," "-," chr10~chr10 109800119 109520633 2 -- 0.693147 2 0 2 2 2 TCGA-SG-A849-01A-11R-A355-07 RP11-389E17.1~Nchr4~178864013 intergenic "RP11-389E17.1," "-," chr4~chr4 178653633 178864013 2 ++ 0.693147 2 0 2 2 6 TCGA-SG-A849-01A-11R-A355-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 5 ++ 1.332179 3 2 1 3 8 TCGA-SG-A849-01A-11R-A355-07 RPS12~Nchr6~151547054 intergenic "RPS12," "-," chr6~chr6 133135904 151547054 2 -- 0.693147 2 2 0 2 2 TCGA-SG-A849-01A-11R-A355-07 YKT6~EIF3B fusion "YKT6," "EIF3B," chr7~chr7 44240838 2419029 123 ++ 3.162337 121 56 60 121 242 TCGA-X6-A7WC-01A-12R-A355-07 ALX4~Nchr3~176138784 intergenic "ALX4," "-," chr11~chr3 44331147 176138784 5 -- 0.950271 5 1 4 5 14 TCGA-X6-A7WC-01A-12R-A355-07 ARHGEF17~C11orf67 fusion "ARHGEF17,ARHGEF17," "C11orf67," chr11~chr11 73022875 77553525 17 ++ 2.282374 15 7 8 15 16 TCGA-X6-A7WC-01A-12R-A355-07 ATP2A2~Nchr20~46639352 intergenic "ATP2A2," "-," chr12~chr20 110729929 46639352 20 ++ 2.302585 17 10 7 17 28 TCGA-X6-A7WC-01A-12R-A355-07 ATP2A2~Nchr20~46639352 intergenic "ATP2A2," "-," chr12~chr20 110720600 46639352 7 ++ 1.94591 6 3 3 6 16 TCGA-X6-A7WC-01A-12R-A355-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48269871 94043216 6 -+ 1.011404 4 3 1 4 8 TCGA-X6-A7WC-01A-12R-A355-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273284 94047811 2 -+ 0.693147 2 1 1 2 18 TCGA-X6-A7WC-01A-12R-A355-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94047811 23 -+ 0.559834 19 19 0 19 30 TCGA-X6-A7WC-01A-12R-A355-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273675 94047856 13 -+ 1.737983 10 7 3 10 28 TCGA-X6-A7WC-01A-12R-A355-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271790 94048829 5 -+ 0.950271 5 4 1 5 16 TCGA-X6-A7WC-01A-12R-A355-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48270358 94049718 10 -+ 0.943348 10 10 0 10 22 TCGA-X6-A7WC-01A-12R-A355-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267040 94052269 6 -+ 1.329661 4 3 1 4 32 TCGA-X6-A7WC-01A-12R-A355-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272593 94054429 6 -+ 0.450561 5 5 0 5 16 TCGA-X6-A7WC-01A-12R-A355-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266546 94055790 2 -+ 0.693147 1 0 1 1 28 TCGA-X6-A7WC-01A-12R-A355-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267220 94056329 2 -+ 0.693147 2 1 1 2 20 TCGA-X6-A7WC-01A-12R-A355-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48263329 94058553 3 -+ 0.636514 3 1 2 3 58 TCGA-X6-A7WC-01A-12R-A355-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268178 189858087 2 -+ 0.693147 1 0 1 1 8 TCGA-X6-A7WC-01A-12R-A355-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268836 189862999 3 -+ 1.098612 3 1 2 3 2 TCGA-X6-A7WC-01A-12R-A355-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266529 189867690 3 -+ 0.636514 1 0 1 1 8 TCGA-X6-A7WC-01A-12R-A355-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48270001 189870139 3 -+ 1.098612 1 1 0 1 2 TCGA-X6-A7WC-01A-12R-A355-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94035615 48266371 8 +- 0.900256 7 0 7 7 6 TCGA-X6-A7WC-01A-12R-A355-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047143 48266371 10 +- 1.168282 8 1 7 8 8 TCGA-X6-A7WC-01A-12R-A355-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94056607 48270054 8 +- 1.732868 2 1 1 2 14 TCGA-X6-A7WC-01A-12R-A355-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047864 48273560 5 +- 1.609438 4 0 4 4 4 TCGA-X6-A7WC-01A-12R-A355-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94049756 189864196 6 ++ 1.56071 4 0 4 4 16 TCGA-X6-A7WC-01A-12R-A355-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94045815 189864568 3 ++ 0.636514 3 1 2 3 4 TCGA-X6-A7WC-01A-12R-A355-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870985 48265317 4 +- 1.386294 2 0 2 2 2 TCGA-X6-A7WC-01A-12R-A355-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189871708 94048829 2 ++ 0.693147 1 1 0 1 4 TCGA-X6-A7WC-01A-12R-A355-07 DDB1~NchrX~89560089 intergenic "DDB1," "-," chr11~chrX 61076455 89560089 10 -- 1.834372 8 4 4 8 10 TCGA-X6-A7WC-01A-12R-A355-07 FCHSD2~Nchr11~67314479 intergenic "FCHSD2," "-," chr11~chr11 72613588 67314479 46 -- 3.138893 44 20 24 44 72 TCGA-X6-A7WC-01A-12R-A355-07 FXR2~Nchr17~7308353 intergenic "FXR2," "-," chr17~chr17 7517770 7308353 2 -+ 0.693147 2 0 2 2 8 TCGA-X6-A7WC-01A-12R-A355-07 HLA-B~HLA-A fusion "HLA-B," "HLA-A," chr6~chr6 31321936 29913260 3 -+ 0.636514 3 2 1 3 68 TCGA-X6-A7WC-01A-12R-A355-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31236775 31322037 3 -- 0.636514 1 1 0 1 802 TCGA-X6-A7WC-01A-12R-A355-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 812 -- 2.034063 809 808 1 809 246 TCGA-X6-A7WC-01A-12R-A355-07 HM13~MYLK2 fusion "HM13," "MYLK2," chr20~chr20 30142632 30412062 6 ++ 1.242453 6 1 5 6 18 TCGA-X6-A7WC-01A-12R-A355-07 HSPA9~LYPD6 fusion "HSPA9," "LYPD6," chr5~chr2 137904614 150196935 3 -+ 1.098612 2 1 1 2 8 TCGA-X6-A7WC-01A-12R-A355-07 HSPA9~LYPD6 fusion "HSPA9," "LYPD6," chr5~chr2 137904614 150209356 6 -+ 1.791759 5 2 3 5 14 TCGA-X6-A7WC-01A-12R-A355-07 KIAA0368~Nchr9~109616593 intergenic "KIAA0368," "-," chr9~chr9 114151836 109616593 7 -+ 1.475076 6 4 2 6 20 TCGA-X6-A7WC-01A-12R-A355-07 MEF2A~LRRC28 fusion "MEF2A," "LRRC28," chr15~chr15 100138716 99926235 22 ++ 2.413341 21 14 7 21 70 TCGA-X6-A7WC-01A-12R-A355-07 MEF2A~LRRC28 fusion "MEF2A," "LRRC28," chr15~chr15 100106309 99926235 4 ++ 1.386294 4 3 1 4 20 TCGA-X6-A7WC-01A-12R-A355-07 NEURL4~SOX15 fusion "NEURL4," "SOX15," chr17~chr17 7229574 7493056 25 -- 2.34131 22 11 11 22 32 TCGA-X6-A7WC-01A-12R-A355-07 NEURL4~SOX15 fusion "NEURL4," "SOX15," chr17~chr17 7229574 7493425 4 -- 1.039721 4 3 1 4 8 TCGA-X6-A7WC-01A-12R-A355-07 NOP56~Nchr12~79952582 intergenic "NOP56,NOP56," "-," chr20~chr12 2637857 79952582 9 ++ 1.676988 6 0 6 6 4 TCGA-X6-A7WC-01A-12R-A355-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 43 -+ 2.451711 13 0 13 13 30 TCGA-X6-A7WC-01A-12R-A355-07 Nchr1~69156242~TCTEX1D1 intergenic "-," "TCTEX1D1," chr1~chr1 69156242 67241962 6 -+ 1.791759 6 4 2 6 4 TCGA-X6-A7WC-01A-12R-A355-07 Nchr2~221704716~USP37 intergenic "-," "USP37," chr2~chr2 221704716 219399429 12 +- 2.253858 5 2 3 5 8 TCGA-X6-A7WC-01A-12R-A355-07 PDE4B~AC093158.1 fusion "PDE4B," "RP4-650F12.4,AC093158.1," chr1~chr1 66821303 74834803 5 +- 1.05492 5 2 3 5 22 TCGA-X6-A7WC-01A-12R-A355-07 PDE4B~RP4-650F12.4 fusion "PDE4B," "RP4-650F12.4," chr1~chr1 66821303 74844485 8 +- 1.667462 8 5 3 8 8 TCGA-X6-A7WC-01A-12R-A355-07 PPP2R5C~Nchr14~94444932 intergenic "PPP2R5C," "-," chr14~chr14 102229307 94444932 4 +- 1.386294 3 1 2 3 24 TCGA-X6-A7WC-01A-12R-A355-07 PXK~Nchr3~84650653 intergenic "PXK," "-," chr3~chr3 58398690 84650653 18 ++ 2.197225 17 6 11 17 16 TCGA-X6-A7WC-01A-12R-A355-07 SENP3~Nchr17~7308353 intergenic "SENP3," "-," chr17~chr17 7469081 7308353 17 ++ 2.278303 17 3 14 17 28 TCGA-X6-A7WC-01A-12R-A355-07 SGCD~HMMR fusion "SGCD," "HMMR," chr5~chr5 156022061 162890862 5 ++ 1.609438 5 2 3 5 2 TCGA-X6-A7WC-01A-12R-A355-07 SUGP1~Nchr21~25029105 intergenic "SUGP1," "-," chr19~chr21 19420906 25029105 4 -+ 1.386294 4 1 3 4 10 TCGA-X6-A7WC-01A-12R-A355-07 SUGP1~Nchr21~25031411 intergenic "SUGP1," "-," chr19~chr21 19420906 25031411 3 -+ 1.098612 3 3 0 3 4 TCGA-X6-A7WC-01A-12R-A355-07 TNIP1~SGCD fusion "TNIP1," "SGCD," chr5~chr5 150418658 155360845 5 -+ 1.609438 5 2 3 5 4 TCGA-X6-A7WC-01A-12R-A355-07 TNIP1~SGCD fusion "TNIP1," "SGCD," chr5~chr5 150418658 155421438 3 -+ 0.636514 3 1 2 3 16 TCGA-X6-A7WC-01A-12R-A355-07 TNIP1~SGCD fusion "TNIP1," "SGCD," chr5~chr5 150418658 155550866 3 -+ 1.098612 2 2 0 2 16 TCGA-X6-A7WC-01A-12R-A355-07 TTLL4~Nchr2~221704614 intergenic "TTLL4," "-," chr2~chr2 219575760 221704614 14 ++ 2.40364 6 4 2 6 6 TCGA-X6-A7WC-01A-12R-A355-07 USP33~Nchr17~21544414 intergenic "USP33," "-," chr1~chr17 78191307 21544414 10 -+ 2.163956 8 2 6 8 18 TCGA-X6-A7WC-01A-12R-A355-07 VPS13D~Nchr11~36331270 intergenic "VPS13D," "-," chr1~chr11 12439650 36331270 7 ++ 1.549826 7 5 2 7 10 TCGA-X6-A7WC-01A-12R-A355-07 VWCE~SH3D19 fusion "VWCE," "SH3D19," chr11~chr4 61048096 152098107 5 -- 1.609438 5 4 1 5 6 TCGA-X6-A7WC-01A-12R-A355-07 WRN~WDR70 fusion "WRN," "WDR70," chr8~chr5 30942762 37697757 1 ++ 0 1 0 1 1 48 TCGA-X6-A7WC-01A-12R-A355-07 WRN~WDR70 fusion "WRN," "WDR70," chr8~chr5 30941295 37697757 11 ++ 1.972247 10 4 6 10 26 TCGA-X6-A7WC-01A-12R-A355-07 ZNF131~GHR fusion "ZNF131," "GHR," chr5~chr5 43068319 42688992 3 ++ 1.098612 3 2 1 3 6 TCGA-X6-A7WD-01A-21R-A355-07 BNC2~C9orf92 fusion "BNC2," "C9orf92," chr9~chr9 16727795 16215897 24 -- 2.299883 21 7 14 21 72 TCGA-X6-A7WD-01A-21R-A355-07 BNC2~C9orf92 fusion "BNC2," "C9orf92," chr9~chr9 16870644 16215897 7 -- 1.475076 7 3 4 7 4 TCGA-X6-A7WD-01A-21R-A355-07 BNC2~C9orf92 fusion "BNC2," "C9orf92," chr9~chr9 16727795 16245787 12 -- 1.979205 11 3 8 11 76 TCGA-X6-A7WD-01A-21R-A355-07 BNC2~C9orf92 fusion "BNC2," "C9orf92," chr9~chr9 16727795 16273036 8 -- 1.906155 8 5 3 8 18 TCGA-X6-A7WD-01A-21R-A355-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94042395 5 -+ 1.332179 2 2 0 2 8 TCGA-X6-A7WD-01A-21R-A355-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48267220 189866123 3 -+ 0.636514 3 2 1 3 8 TCGA-X6-A7WD-01A-21R-A355-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272830 189870076 9 -+ 1.522955 9 4 5 9 2 TCGA-X6-A7WD-01A-21R-A355-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48271790 189870095 7 -+ 0.9557 6 5 1 6 4 TCGA-X6-A7WD-01A-21R-A355-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265237 189871089 4 -+ 1.386294 3 2 1 3 2 TCGA-X6-A7WD-01A-21R-A355-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94052430 48270175 15 +- 2.083766 10 1 9 10 10 TCGA-X6-A7WD-01A-21R-A355-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94049871 189864066 4 ++ 1.039721 4 1 3 4 8 TCGA-X6-A7WD-01A-21R-A355-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94051264 189864196 8 ++ 2.079442 7 1 6 7 8 TCGA-X6-A7WD-01A-21R-A355-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94047143 189864568 2 ++ 0.693147 2 1 1 2 4 TCGA-X6-A7WD-01A-21R-A355-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189867788 94043038 6 ++ 1.56071 2 1 1 2 8 TCGA-X6-A7WD-01A-21R-A355-07 CTD-2337A12.1~CAST fusion "CTD-2337A12.1," "CAST," chr5~chr5 95715356 96011243 2 ++ 0.693147 2 0 2 2 4 TCGA-X6-A7WD-01A-21R-A355-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 18 -- 2.120208 18 18 0 18 16 TCGA-X6-A7WD-01A-21R-A355-07 HUWE1~NchrX~56058164 intergenic "HUWE1," "-," chrX~chrX 53577627 56058164 7 -- 1.475076 7 1 6 7 38 TCGA-X6-A7WD-01A-21R-A355-07 Nchr10~125126736~ALAS2 intergenic "-," "ALAS2," chr10~chrX 125126736 55035776 16 +- 2.426015 15 8 7 15 44 TCGA-X6-A7WD-01A-21R-A355-07 Nchr10~47655224~ZNF488 intergenic "-," "ZNF488," chr10~chr10 47655224 48359418 9 -- 2.197225 5 3 2 5 2 TCGA-X6-A7WD-01A-21R-A355-07 Nchr11~27603245~RPS25 intergenic "-," "RPS25," chr11~chr11 27603245 118889038 3 -- 1.098612 3 0 3 3 212 TCGA-X6-A7WD-01A-21R-A355-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 93 -+ 2.373174 44 0 44 44 62 TCGA-X6-A7WD-01A-21R-A355-07 Nchr12~20342377~PDE3A intergenic "-," "PDE3A," chr12~chr12 20342377 20709594 41 ++ 2.538875 31 31 0 31 6 TCGA-X6-A7WD-01A-21R-A355-07 Nchr15~21916043~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21916043 20876597 8 -- 1.906155 6 4 2 6 10 TCGA-X6-A7WD-01A-21R-A355-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 14 -+ 1.965237 13 7 6 13 72 TCGA-X6-A7WD-01A-21R-A355-07 Nchr2~139258325~Nchr2~139057107 intergenic "-," "-," chr2~chr2 139258325 139057107 2 -- 0.693147 2 1 1 2 10 TCGA-X6-A7WD-01A-21R-A355-07 Nchr3~187872040~LPP intergenic "-," "LPP," chr3~chr3 187872040 188123900 2 ++ 0.693147 2 0 2 2 2 TCGA-X6-A7WD-01A-21R-A355-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 7 ++ 1.747868 6 6 0 6 4 TCGA-X6-A7WD-01A-21R-A355-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 72 ++ 2.746148 15 2 13 15 6 TCGA-X6-A7WD-01A-21R-A355-07 Nchr9~17906920~Nchr9~18163860 intergenic "-," "-," chr9~chr9 17906920 18163860 4 ++ 1.386294 2 2 0 2 6 TCGA-X6-A7WD-01A-21R-A355-07 RP11-282I1.1~ALAS2 fusion "RP11-282I1.1," "ALAS2," chr10~chrX 125121663 55035776 22 +- 2.282849 21 13 8 21 64 TCGA-X6-A7WD-01A-21R-A355-07 RP11-371M22.1~Nchr5~113696642 intergenic "RP11-371M22.1," "-," chr5~chr5 113392868 113696642 2 ++ 0.693147 2 1 1 2 2 TCGA-X6-A7W8-01A-21R-A355-07 AC096579.13~NchrY~13629437 intergenic "IGKJ2,AC096579.13," "-," chr2~chrY 89161070 13629437 1018 ++ 2.924052 527 515 6 527 42 TCGA-X6-A7W8-01A-21R-A355-07 ACACA~Nchr1~249229631 intergenic "ACACA," "-," chr17~chr1 35715942 249229631 3 -- 1.098612 1 0 1 1 6 TCGA-X6-A7W8-01A-21R-A355-07 ACACA~PARD6G fusion "ACACA," "PARD6G," chr17~chr18 35715942 77960815 4 -- 1.386294 4 0 4 4 10 TCGA-X6-A7W8-01A-21R-A355-07 ADAMTS5~Nchr17~6654356 intergenic "ADAMTS5," "-," chr21~chr17 28315699 6654356 10 -+ 2.163956 8 3 5 8 18 TCGA-X6-A7W8-01A-21R-A355-07 ADAMTS5~Nchr17~6654356 intergenic "ADAMTS5," "-," chr21~chr17 28306785 6654356 5 -+ 1.05492 5 3 2 5 4 TCGA-X6-A7W8-01A-21R-A355-07 ARFGEF2~TTLL9 fusion "ARFGEF2," "TTLL9," chr20~chr20 47634087 30510766 9 ++ 1.83102 8 4 4 8 10 TCGA-X6-A7W8-01A-21R-A355-07 AXIN2~Nchr17~43442146 intergenic "AXIN2," "-," chr17~chr17 63553924 43442146 2 -- 0.693147 2 0 2 2 4 TCGA-X6-A7W8-01A-21R-A355-07 AXIN2~Nchr17~43443364 intergenic "AXIN2," "-," chr17~chr17 63553924 43443364 3 -- 1.098612 3 1 2 3 6 TCGA-X6-A7W8-01A-21R-A355-07 BNC2~C9orf92 fusion "BNC2," "C9orf92," chr9~chr9 16435553 16215897 4 -- 1.039721 4 1 3 4 6 TCGA-X6-A7W8-01A-21R-A355-07 C17orf63~PRPSAP1 fusion "C17orf63," "PRPSAP1," chr17~chr17 27139227 74309972 8 -- 1.667462 8 4 4 8 24 TCGA-X6-A7W8-01A-21R-A355-07 C17orf63~PRPSAP1 fusion "C17orf63," "PRPSAP1," chr17~chr17 27161311 74309972 9 -- 1.273028 9 2 7 9 16 TCGA-X6-A7W8-01A-21R-A355-07 C17orf63~PRPSAP1 fusion "C17orf63," "PRPSAP1," chr17~chr17 27169700 74309972 31 -- 2.844487 30 0 30 30 8 TCGA-X6-A7W8-01A-21R-A355-07 CEP135~Nchr3~163550961 intergenic "CEP135," "-," chr4~chr3 56823530 163550961 5 +- 1.332179 5 2 3 5 8 TCGA-X6-A7W8-01A-21R-A355-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 2 +- 0.693147 2 2 0 2 30 TCGA-X6-A7W8-01A-21R-A355-07 EDF1~Nchr9~139760762 intergenic "EDF1," "-," chr9~chr9 139758301 139760762 2 +- 0.693147 2 2 0 2 28 TCGA-X6-A7W8-01A-21R-A355-07 EFCAB11~Nchr14~90095480 intergenic "EFCAB11," "-," chr14~chr14 90397885 90095480 3 -- 0.636514 3 3 0 3 4 TCGA-X6-A7W8-01A-21R-A355-07 FAM38B~IMPA2 fusion "FAM38B," "IMPA2," chr18~chr18 10670675 12030342 4 -+ 1.039721 4 1 3 4 2 TCGA-X6-A7W8-01A-21R-A355-07 FAM38B~IMPA2 fusion "FAM38B," "IMPA2," chr18~chr18 10672687 12030342 11 -+ 2.145842 11 4 7 11 22 TCGA-X6-A7W8-01A-21R-A355-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 133 -- 2.023956 133 133 0 133 32 TCGA-X6-A7W8-01A-21R-A355-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 159 -- 2.514607 70 17 53 70 2 TCGA-X6-A7W8-01A-21R-A355-07 HSPB1~Nchr9~74622964 intergenic "HSPB1," "-," chr7~chr9 75932344 74622964 3 -+ 0.636514 2 2 0 2 344 TCGA-X6-A7W8-01A-21R-A355-07 MAP3K14~SRP68 fusion "MAP3K14," "SRP68," chr17~chr17 43362179 74063411 13 -- 2.098147 5 4 1 5 8 TCGA-X6-A7W8-01A-21R-A355-07 MTMR12~Nchr5~74213012 intergenic "MTMR12," "-," chr5~chr5 32312864 74213012 3 -+ 0.636514 3 2 1 3 6 TCGA-X6-A7W8-01A-21R-A355-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 143 -+ 2.531289 55 0 54 55 32 TCGA-X6-A7W8-01A-21R-A355-07 Nchr13~114048114~Nchr13~113921923 intergenic "-," "-," chr13~chr13 114048114 113921923 6 -+ 1.791759 5 1 4 5 12 TCGA-X6-A7W8-01A-21R-A355-07 Nchr17~16343567~Nchr17~16343499 intergenic "-," "-," chr17~chr17 16343567 16343499 3 ++ 0.636514 3 3 0 3 2 TCGA-X6-A7W8-01A-21R-A355-07 Nchr17~16344776~Nchr17~16344871 intergenic "-," "-," chr17~chr17 16344776 16344871 2 -- 0.693147 2 2 0 2 2 TCGA-X6-A7W8-01A-21R-A355-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 10 ++ 1.220607 7 2 5 7 134 TCGA-X6-A7W8-01A-21R-A355-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 19 -+ 2.40616 17 11 6 17 128 TCGA-X6-A7W8-01A-21R-A355-07 Nchr1~171639784~Nchr1~171639676 intergenic "-," "-," chr1~chr1 171639784 171639676 3 ++ 0.636514 3 0 3 3 6 TCGA-X6-A7W8-01A-21R-A355-07 Nchr1~51623362~CFL1 intergenic "-," "CFL1," chr1~chr11 51623362 65622526 5 ++ 1.332179 1 0 1 1 2 TCGA-X6-A7W8-01A-21R-A355-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 6 ++ 1.56071 3 1 2 3 8 TCGA-X6-A7W8-01A-21R-A355-07 Nchr2~81775871~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81775871 82075877 4 ++ 1.039721 3 0 3 3 4 TCGA-X6-A7W8-01A-21R-A355-07 Nchr3~163530643~Nchr3~166034505 intergenic "-," "-," chr3~chr3 163530643 166034505 2 -+ 0.693147 1 0 1 1 4 TCGA-X6-A7W8-01A-21R-A355-07 Nchr3~82251605~Nchr3~82465271 intergenic "-," "-," chr3~chr3 82251605 82465271 5 ++ 1.332179 5 1 4 5 8 TCGA-X6-A7W8-01A-21R-A355-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 6 ++ 1.329661 6 6 0 6 4 TCGA-X6-A7W8-01A-21R-A355-07 NchrX~45212957~NchrX~45461542 intergenic "-," "-," chrX~chrX 45212957 45461542 2 ++ 0.693147 2 1 1 2 10 TCGA-X6-A7W8-01A-21R-A355-07 PAN3~EFHA1 fusion "PAN3," "EFHA1," chr13~chr13 28794515 22096789 13 +- 2.031759 12 6 6 12 6 TCGA-X6-A7W8-01A-21R-A355-07 PRPSAP1~Nchr17~13512467 intergenic "PRPSAP1," "-," chr17~chr17 74324798 13512467 13 -+ 2.098147 13 6 7 13 4 TCGA-X6-A7W8-01A-21R-A355-07 PRR11~Nchr17~75761867 intergenic "PRR11," "-," chr17~chr17 57247241 75761867 22 ++ 2.689178 21 11 10 21 56 TCGA-X6-A7W8-01A-21R-A355-07 PTPRD~Nchr9~13607441 intergenic "PTPRD," "-," chr9~chr9 8470995 13607441 5 -- 1.609438 5 3 2 5 10 TCGA-X6-A7W8-01A-21R-A355-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 7 ++ 1.94591 7 4 3 7 14 TCGA-X6-A7W8-01A-21R-A355-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 10 +- 0.639032 7 0 7 7 4 TCGA-X6-A7W8-01A-21R-A355-07 SLC9A3R1~Nchr17~50854915 intergenic "SLC9A3R1," "-," chr17~chr17 72745426 50854915 9 ++ 1.676988 9 7 2 9 20 TCGA-X6-A7W8-01A-21R-A355-07 ZDHHC20~IGHV7-81 fusion "ZDHHC20," "IGHV7-81," chr13~chr14 22033193 107283096 4 -- 1.386294 2 0 2 2 2 TCGA-MJ-A850-01A-11R-A355-07 C1orf196~KAZN fusion "C1orf196," "KAZN," chr1~chr1 14507087 14925479 2 ++ 0.693147 1 1 0 1 4 TCGA-MJ-A850-01A-11R-A355-07 CPSF4~RP11-762I7.5 fusion "CPSF4," "RP11-762I7.5,SARNP," chr7~chr12 99040711 56184376 3 +- 1.098612 3 1 2 3 28 TCGA-MJ-A850-01A-11R-A355-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 8 +- 1.906155 7 7 0 7 28 TCGA-MJ-A850-01A-11R-A355-07 GLTSCR2~Nchr15~95399083 intergenic "GLTSCR2," "-," chr19~chr15 48253526 95399083 2 ++ 0.693147 1 0 1 1 30 TCGA-MJ-A850-01A-11R-A355-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 22 -- 2.050706 22 22 0 22 14 TCGA-MJ-A850-01A-11R-A355-07 NAP1L1~Nchr3~120525220 intergenic "NAP1L1," "-," chr12~chr3 76447099 120525220 3 +- 0.636514 2 2 0 2 18 TCGA-MJ-A850-01A-11R-A355-07 NCRNA00238~Nchr14~66584657 intergenic "NCRNA00238," "-," chr14~chr14 66962980 66584657 2 -- 0.693147 1 0 1 1 8 TCGA-MJ-A850-01A-11R-A355-07 NOP56~Nchr12~79952582 intergenic "NOP56,NOP56," "-," chr20~chr12 2637857 79952582 20 ++ 2.154783 15 2 13 15 16 TCGA-MJ-A850-01A-11R-A355-07 Nchr10~86320576~Nchr10~86320784 intergenic "-," "-," chr10~chr10 86320576 86320784 16 -- 2.220025 13 13 0 13 6 TCGA-MJ-A850-01A-11R-A355-07 Nchr10~91738461~SNRPD2 intergenic "-," "SNRPD2," chr10~chr19 91738461 46195211 2 -- 0.693147 2 0 2 2 18 TCGA-MJ-A850-01A-11R-A355-07 Nchr11~27603266~RPS25 intergenic "-," "RPS25," chr11~chr11 27603266 118888759 11 -- 2.145842 11 8 3 11 1078 TCGA-MJ-A850-01A-11R-A355-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 142 -+ 2.302422 73 0 72 73 46 TCGA-MJ-A850-01A-11R-A355-07 Nchr12~104659073~Nchr12~104659181 intergenic "-," "-," chr12~chr12 104659073 104659181 2 -- 0.693147 2 2 0 2 116 TCGA-MJ-A850-01A-11R-A355-07 Nchr12~32879318~NAP1L1 intergenic "-," "NAP1L1," chr12~chr12 32879318 76443034 2 -- 0.693147 1 0 1 1 98 TCGA-MJ-A850-01A-11R-A355-07 Nchr12~63359160~Nchr12~63359287 intergenic "-," "-," chr12~chr12 63359160 63359287 5 -- 1.332179 5 2 3 5 10 TCGA-MJ-A850-01A-11R-A355-07 Nchr14~99439513~Nchr14~99439316 intergenic "-," "-," chr14~chr14 99439513 99439316 2 ++ 0.693147 2 0 2 2 112 TCGA-MJ-A850-01A-11R-A355-07 Nchr15~70878214~Nchr15~70423230 intergenic "-," "-," chr15~chr15 70878214 70423230 3 -- 1.098612 2 1 1 2 10 TCGA-MJ-A850-01A-11R-A355-07 Nchr15~70878214~Nchr15~70640258 intergenic "-," "-," chr15~chr15 70878214 70640258 5 -- 1.332179 4 0 4 4 22 TCGA-MJ-A850-01A-11R-A355-07 Nchr17~16343551~Nchr17~16344712 intergenic "-," "-," chr17~chr17 16343551 16344712 3 -+ 1.098612 3 3 0 3 122 TCGA-MJ-A850-01A-11R-A355-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 9 ++ 1.002718 9 0 9 9 94 TCGA-MJ-A850-01A-11R-A355-07 Nchr19~54611704~TFPT intergenic "-," "TFPT," chr19~chr19 54611704 54613495 2 +- 0.693147 2 2 0 2 6 TCGA-MJ-A850-01A-11R-A355-07 Nchr1~192685560~Nchr1~192685467 intergenic "-," "-," chr1~chr1 192685560 192685467 5 ++ 1.332179 4 4 0 4 8 TCGA-MJ-A850-01A-11R-A355-07 Nchr1~51623362~CFL1 intergenic "-," "CFL1," chr1~chr11 51623362 65622526 5 ++ 1.609438 3 0 3 3 2 TCGA-MJ-A850-01A-11R-A355-07 Nchr1~99473933~RPL5 intergenic "-," "RPL5," chr1~chr1 99473933 93303175 23 ++ 2.148366 2 2 0 2 4 TCGA-MJ-A850-01A-11R-A355-07 Nchr1~99473933~RPL5 intergenic "-," "RPL5," chr1~chr1 99473933 93306108 14 ++ 1.668174 3 3 0 3 10 TCGA-MJ-A850-01A-11R-A355-07 Nchr1~99473933~RPL5 intergenic "-," "RPL5," chr1~chr1 99473933 93306114 3 ++ 1.098612 1 1 0 1 10 TCGA-MJ-A850-01A-11R-A355-07 Nchr1~99473933~RPL5 intergenic "-," "RPL5," chr1~chr1 99473933 93306150 4 ++ 1.386294 3 2 1 3 10 TCGA-MJ-A850-01A-11R-A355-07 Nchr2~177065785~Nchr2~177065905 intergenic "-," "-," chr2~chr2 177065785 177065905 4 -- 1.386294 3 0 3 3 6 TCGA-MJ-A850-01A-11R-A355-07 Nchr2~177065909~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065909 177065788 7 ++ 1.549826 7 0 7 7 6 TCGA-MJ-A850-01A-11R-A355-07 Nchr2~177065915~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065915 177065788 7 ++ 1.747868 7 0 7 7 8 TCGA-MJ-A850-01A-11R-A355-07 Nchr2~177065929~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065929 177065788 8 ++ 1.320888 8 0 8 8 150 TCGA-MJ-A850-01A-11R-A355-07 Nchr5~93018536~NPM1 intergenic "-," "NPM1," chr5~chr5 93018536 170837597 2 -- 0.693147 1 1 0 1 16 TCGA-MJ-A850-01A-11R-A355-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 9 -- 1.522955 8 8 0 8 2 TCGA-MJ-A850-01A-11R-A355-07 Nchr6~153603718~Nchr6~153603847 intergenic "-," "-," chr6~chr6 153603718 153603847 2 -- 0.693147 2 0 2 2 12 TCGA-MJ-A850-01A-11R-A355-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 33 ++ 2.227704 32 31 1 32 6 TCGA-MJ-A850-01A-11R-A355-07 Nchr6~86030922~Nchr6~85824260 intergenic "-," "-," chr6~chr6 86030922 85824260 3 -- 1.098612 3 0 3 3 8 TCGA-MJ-A850-01A-11R-A355-07 Nchr9~19200532~RPS6 intergenic "-," "RPS6," chr9~chr9 19200532 19378478 8 -- 1.559581 8 0 8 8 250 TCGA-MJ-A850-01A-11R-A355-07 Nchr9~92470507~RP5-1050E16.2 intergenic "-," "RP5-1050E16.2," chr9~chr9 92470507 92522698 5 ++ 1.332179 5 1 4 5 8 TCGA-MJ-A850-01A-11R-A355-07 PRDX5~Nchr3~73697612 intergenic "PRDX5," "-," chr11~chr3 64088219 73697612 3 -- 1.098612 3 3 0 3 296 TCGA-MJ-A850-01A-11R-A355-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 3 ++ 1.098612 1 0 1 1 4 TCGA-MJ-A850-01A-11R-A355-07 RP13-188A5.1~NchrX~56231406 intergenic "RP13-188A5.1," "-," chrX~chrX 55935233 56231406 3 ++ 1.098612 3 3 0 3 4 TCGA-MJ-A850-01A-11R-A355-07 SS18~SSX1 fusion "SS18," "SSX1," chr18~chrX 23612363 48123217 431 -+ 3.214201 406 176 230 406 578 TCGA-MJ-A850-01A-11R-A355-07 TPT1~Nchr6~144522012 intergenic "TPT1," "-," chr13~chr6 45914859 144522012 3 -- 0.636514 2 2 0 2 52 TCGA-MJ-A850-01A-11R-A355-07 ZNF44~RPL28 fusion "ZNF44," "RPL28," chr19~chr19 12371137 55897958 5 -+ 1.332179 4 0 4 4 1292 TCGA-FX-A76Y-01A-11R-A355-07 ACTG2~ACTA2 fusion "ACTG2," "RP11-399O19.5,ACTA2," chr2~chr10 74140773 90699455 3 +- 1.098612 2 0 2 2 4 TCGA-FX-A76Y-01A-11R-A355-07 ACTR10~MKX fusion "ACTR10," "MKX," chr14~chr10 58667012 27964483 27 +- 2.323523 25 19 6 25 50 TCGA-FX-A76Y-01A-11R-A355-07 C10orf76~Nchr10~3869973 intergenic "C10orf76," "-," chr10~chr10 103799770 3869973 8 -- 1.386294 8 6 2 8 36 TCGA-FX-A76Y-01A-11R-A355-07 C15orf57~CBX3 fusion "C15orf57," "CBX3," chr15~chr7 40854971 26241389 3 -+ 1.098612 1 1 0 1 8 TCGA-FX-A76Y-01A-11R-A355-07 C17orf76~Nchr14~56969137 intergenic "C17orf76," "-," chr17~chr14 16365572 56969137 9 -- 1.83102 8 4 4 8 14 TCGA-FX-A76Y-01A-11R-A355-07 CPSF6~C9orf3 fusion "CPSF6," "C9orf3," chr12~chr9 69656342 97848964 3 ++ 1.098612 3 1 2 3 4 TCGA-FX-A76Y-01A-11R-A355-07 DES~TPM2 fusion "DES,AC053503.6," "TPM2," chr2~chr9 220290807 35689867 2 +- 0.693147 1 1 0 1 4 TCGA-FX-A76Y-01A-11R-A355-07 DLG5~Nchr10~20808748 intergenic "DLG5," "-," chr10~chr10 79579079 20808748 5 -- 1.609438 5 3 2 5 16 TCGA-FX-A76Y-01A-11R-A355-07 DLG5~Nchr10~20841123 intergenic "DLG5," "-," chr10~chr10 79579079 20841123 2 -- 0.693147 2 2 0 2 30 TCGA-FX-A76Y-01A-11R-A355-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238905 31324034 3 -- 1.098612 2 2 0 2 42 TCGA-FX-A76Y-01A-11R-A355-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 29 -- 1.911385 29 1 28 29 12 TCGA-FX-A76Y-01A-11R-A355-07 HN1~Nchr2~174296244 intergenic "HN1," "-," chr17~chr2 73143651 174296244 25 -- 1.173414 17 17 0 17 6 TCGA-FX-A76Y-01A-11R-A355-07 ISOC1~Nchr5~128679362 intergenic "ISOC1," "-," chr5~chr5 128442755 128679362 2 ++ 0.693147 2 1 1 2 4 TCGA-FX-A76Y-01A-11R-A355-07 KCNMA1~ESD fusion "KCNMA1," "ESD," chr10~chr13 79163620 47367579 6 -- 1.56071 6 0 6 6 16 TCGA-FX-A76Y-01A-11R-A355-07 LRRC7~Nchr1~70027223 intergenic "LRRC7," "-," chr1~chr1 70144161 70027223 4 ++ 0.562335 3 3 0 3 6 TCGA-FX-A76Y-01A-11R-A355-07 MYPN~PLXDC2 fusion "MYPN," "PLXDC2," chr10~chr10 69918384 20453397 9 ++ 2.043192 8 2 6 8 6 TCGA-FX-A76Y-01A-11R-A355-07 NT5C2~DLEU1 fusion "NT5C2," "DLEU1," chr10~chr13 104899163 50678840 47 -+ 3.020367 44 20 24 44 160 TCGA-FX-A76Y-01A-11R-A355-07 NT5C2~DLEU1 fusion "NT5C2," "DLEU1," chr10~chr13 104934615 50678840 3 -+ 1.098612 3 1 2 3 52 TCGA-FX-A76Y-01A-11R-A355-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 56 -+ 2.39721 28 0 28 28 50 TCGA-FX-A76Y-01A-11R-A355-07 Nchr12~63359160~Nchr12~63359287 intergenic "-," "-," chr12~chr12 63359160 63359287 2 -- 0.693147 2 0 2 2 6 TCGA-FX-A76Y-01A-11R-A355-07 Nchr13~38509046~RB1 intergenic "-," "RB1," chr13~chr13 38509046 48916735 12 -+ 2.138333 11 4 7 11 30 TCGA-FX-A76Y-01A-11R-A355-07 Nchr13~40741924~RB1 intergenic "-," "RB1," chr13~chr13 40741924 48916735 3 ++ 1.098612 3 0 3 3 8 TCGA-FX-A76Y-01A-11R-A355-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 2 -+ 0.693147 2 1 1 2 66 TCGA-FX-A76Y-01A-11R-A355-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 2 ++ 0.693147 1 1 0 1 8 TCGA-FX-A76Y-01A-11R-A355-07 Nchr2~139258325~Nchr2~139057107 intergenic "-," "-," chr2~chr2 139258325 139057107 4 -- 1.386294 2 1 1 2 8 TCGA-FX-A76Y-01A-11R-A355-07 Nchr2~177065915~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065915 177065788 2 ++ 0.693147 2 0 2 2 4 TCGA-FX-A76Y-01A-11R-A355-07 Nchr2~177065929~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065929 177065788 2 ++ 0.693147 2 0 2 2 46 TCGA-FX-A76Y-01A-11R-A355-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 2 -- 0.693147 2 2 0 2 2 TCGA-FX-A76Y-01A-11R-A355-07 Nchr7~10124903~AC060834.3 intergenic "-," "AC060834.3," chr7~chr7 10124903 9799692 2 -- 0.693147 2 1 1 2 2 TCGA-FX-A76Y-01A-11R-A355-07 Nchr9~17906920~Nchr9~18163860 intergenic "-," "-," chr9~chr9 17906920 18163860 10 ++ 2.025326 8 3 5 8 26 TCGA-FX-A76Y-01A-11R-A355-07 Nchr9~18163979~ADAMTSL1 intergenic "-," "ADAMTSL1," chr9~chr9 18163979 18504827 11 ++ 2.397895 7 5 2 7 18 TCGA-FX-A76Y-01A-11R-A355-07 Nchr9~28947816~LINGO2 intergenic "-," "LINGO2," chr9~chr9 28947816 28670278 36 -- 2.776462 10 7 3 10 12 TCGA-FX-A76Y-01A-11R-A355-07 Nchr9~29212088~Nchr9~28947912 intergenic "-," "-," chr9~chr9 29212088 28947912 4 -- 1.386294 1 1 0 1 8 TCGA-FX-A76Y-01A-11R-A355-07 Nchr9~29212920~Nchr9~28947912 intergenic "-," "-," chr9~chr9 29212920 28947912 17 -- 2.313154 8 1 7 8 16 TCGA-FX-A76Y-01A-11R-A355-07 PLXDC2~PDCD11 fusion "PLXDC2," "PDCD11," chr10~chr10 20466338 105182745 10 ++ 2.163956 9 7 2 9 20 TCGA-FX-A76Y-01A-11R-A355-07 RB1~Nchr13~111661128 intergenic "RB1," "-," chr13~chr13 48919335 111661128 6 +- 1.56071 6 4 2 6 20 TCGA-FX-A76Y-01A-11R-A355-07 RB1~Nchr13~111686656 intergenic "RB1," "-," chr13~chr13 48919335 111686656 2 +- 0.693147 2 1 1 2 6 TCGA-FX-A76Y-01A-11R-A355-07 RP11-161D15.2~Nchr4~175008683 intergenic "RP11-161D15.2," "-," chr4~chr4 174799431 175008683 2 ++ 0.693147 2 1 1 2 4 TCGA-FX-A76Y-01A-11R-A355-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 6 ++ 1.791759 6 4 2 6 14 TCGA-FX-A76Y-01A-11R-A355-07 RPS12~Nchr6~151547126 intergenic "RPS12," "-," chr6~chr6 133135708 151547126 2 -- 0.693147 1 0 1 1 122 TCGA-FX-A76Y-01A-11R-A355-07 TPM2~ACTG1 fusion "TPM2," "ACTG1," chr9~chr17 35685061 79478652 8 -- 1.667462 8 4 4 8 8 TCGA-FX-A76Y-01A-11R-A355-07 UFM1~Nchr10~101336456 intergenic "UFM1," "-," chr13~chr10 38928433 101336456 3 +- 1.098612 2 1 1 2 10 TCGA-FX-A76Y-01A-11R-A355-07 UFM1~Nchr10~101336863 intergenic "UFM1," "-," chr13~chr10 38928433 101336863 60 +- 2.998088 57 14 43 57 62 TCGA-X6-A7WB-01A-11R-A355-07 ATRX~NchrX~75913486 intergenic "ATRX," "-," chrX~chrX 76972608 75913486 6 -- 1.791759 5 4 1 5 22 TCGA-X6-A7WB-01A-11R-A355-07 ATRX~NchrX~76058317 intergenic "ATRX," "-," chrX~chrX 76972608 76058317 8 -- 1.386294 6 0 6 6 6 TCGA-X6-A7WB-01A-11R-A355-07 ATRX~NchrX~76227805 intergenic "ATRX," "-," chrX~chrX 76972608 76227805 4 -- 1.039721 3 1 2 3 4 TCGA-X6-A7WB-01A-11R-A355-07 DSE~Nchr6~98484195 intergenic "DSE," "-," chr6~chr6 116692284 98484195 6 +- 1.791759 6 2 4 6 8 TCGA-X6-A7WB-01A-11R-A355-07 DSE~Nchr6~98497462 intergenic "DSE," "-," chr6~chr6 116692284 98497462 3 +- 1.098612 3 2 1 3 4 TCGA-X6-A7WB-01A-11R-A355-07 EHMT2~NchrX~153017141 intergenic "EHMT2," "-," chr6~chrX 31864040 153017141 27 -+ 2.692291 24 13 11 24 18 TCGA-X6-A7WB-01A-11R-A355-07 ESR1~Nchr3~194090696 intergenic "ESR1," "-," chr6~chr3 152332929 194090696 13 ++ 2.138397 13 6 7 13 10 TCGA-X6-A7WB-01A-11R-A355-07 FTSJD2~PPARD fusion "FTSJD2," "PPARD," chr6~chr6 37403538 35378764 6 ++ 1.791759 4 1 3 4 20 TCGA-X6-A7WB-01A-11R-A355-07 KIAA0240~TMEM217 fusion "KIAA0240," "TMEM217," chr6~chr6 42749839 37186817 13 +- 2.351673 13 13 0 13 2 TCGA-X6-A7WB-01A-11R-A355-07 KLF12~CAMK2G fusion "KLF12," "CAMK2G," chr13~chr10 74518118 75577312 27 -- 2.782395 16 10 6 16 28 TCGA-X6-A7WB-01A-11R-A355-07 NOP56~Nchr12~79952582 intergenic "NOP56,NOP56," "-," chr20~chr12 2637857 79952582 4 ++ 1.386294 4 1 3 4 6 TCGA-X6-A7WB-01A-11R-A355-07 Nchr10~113732835~Nchr10~113394930 intergenic "-," "-," chr10~chr10 113732835 113394930 7 -- 1.747868 5 3 2 5 2 TCGA-X6-A7WB-01A-11R-A355-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 20 -+ 2.111631 12 0 12 12 22 TCGA-X6-A7WB-01A-11R-A355-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 3 -+ 1.098612 3 2 1 3 36 TCGA-X6-A7WB-01A-11R-A355-07 Nchr1~192685469~Nchr1~192685560 intergenic "-," "-," chr1~chr1 192685469 192685560 4 -- 1.386294 3 3 0 3 2 TCGA-X6-A7WB-01A-11R-A355-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 4 ++ 1.386294 3 2 1 3 8 TCGA-X6-A7WB-01A-11R-A355-07 Nchr3~100913972~ABI3BP intergenic "-," "ABI3BP," chr3~chr3 100913972 100645325 3 -- 1.098612 3 3 0 3 22 TCGA-X6-A7WB-01A-11R-A355-07 Nchr3~22146977~ZNF385D intergenic "-," "ZNF385D," chr3~chr3 22146977 21706520 12 -- 1.979205 9 4 5 9 32 TCGA-X6-A7WB-01A-11R-A355-07 Nchr3~59556125~FHIT intergenic "-," "FHIT," chr3~chr3 59556125 59795458 6 ++ 1.329661 6 5 1 6 18 TCGA-X6-A7WB-01A-11R-A355-07 Nchr4~112578001~Nchr4~112339403 intergenic "-," "-," chr4~chr4 112578001 112339403 8 -- 1.906155 7 7 0 7 2 TCGA-X6-A7WB-01A-11R-A355-07 Nchr7~135665806~AC009784.3 intergenic "-," "AC009784.3," chr7~chr7 135665806 135926898 2 ++ 0.693147 2 0 2 2 6 TCGA-X6-A7WB-01A-11R-A355-07 Nchr9~28947816~LINGO2 intergenic "-," "LINGO2," chr9~chr9 28947816 28670278 14 -- 2.205598 6 0 6 6 4 TCGA-X6-A7WB-01A-11R-A355-07 Nchr9~29212920~Nchr9~28947912 intergenic "-," "-," chr9~chr9 29212920 28947912 11 -- 1.84622 8 1 7 8 8 TCGA-X6-A7WB-01A-11R-A355-07 NchrX~25540982~NchrX~25837303 intergenic "-," "-," chrX~chrX 25540982 25837303 2 ++ 0.693147 1 1 0 1 8 TCGA-X6-A7WB-01A-11R-A355-07 NchrX~25566342~NchrX~25837303 intergenic "-," "-," chrX~chrX 25566342 25837303 12 ++ 2.138333 6 5 1 6 14 TCGA-X6-A7WB-01A-11R-A355-07 OPA1~NchrX~131743652 intergenic "OPA1," "-," chr3~chrX 193376784 131743652 24 ++ 2.578629 21 12 9 21 22 TCGA-X6-A7WB-01A-11R-A355-07 OPA1~NchrX~131744370 intergenic "OPA1," "-," chr3~chrX 193376784 131744370 7 ++ 1.747868 7 4 3 7 12 TCGA-X6-A7WB-01A-11R-A355-07 PPARD~SLC22A7 fusion "PPARD," "SLC22A7," chr6~chr6 35378994 43267636 5 ++ 1.609438 5 4 1 5 20 TCGA-X6-A7WB-01A-11R-A355-07 PTPRK~Nchr6~131106311 intergenic "PTPRK," "-," chr6~chr6 128505577 131106311 4 -+ 1.386294 4 2 2 4 14 TCGA-X6-A7WB-01A-11R-A355-07 PTPRK~Nchr6~131115272 intergenic "PTPRK," "-," chr6~chr6 128505577 131115272 19 -+ 2.479122 16 6 10 16 16 TCGA-X6-A7WB-01A-11R-A355-07 PTPRK~Nchr6~131146966 intergenic "PTPRK," "-," chr6~chr6 128505577 131146966 6 -+ 1.56071 6 4 2 6 24 TCGA-X6-A7WB-01A-11R-A355-07 RP11-123O10.4~GRIP1 fusion "RP11-123O10.4," "GRIP1," chr12~chr12 67462830 66990707 6 -- 1.56071 5 1 4 5 16 TCGA-X6-A7WB-01A-11R-A355-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 4 ++ 1.386294 4 2 2 4 10 TCGA-X6-A7WB-01A-11R-A355-07 RSPO1~COL3A1 fusion "RSPO1," "COL3A1," chr1~chr2 38077349 189866262 2 -+ 0.693147 2 0 2 2 4 TCGA-X6-A7WB-01A-11R-A355-07 TBC1D1~Nchr17~4520286 intergenic "TBC1D1," "-," chr4~chr17 38029500 4520286 4 +- 1.386294 3 1 2 3 12 TCGA-X6-A7WB-01A-11R-A355-07 TBC1D1~Nchr17~4520358 intergenic "TBC1D1," "-," chr4~chr17 38029500 4520358 17 +- 2.588573 17 7 10 17 24 TCGA-X6-A7WB-01A-11R-A355-07 TPM2~ACTG1 fusion "TPM2," "ACTG1," chr9~chr17 35685061 79478652 2 -- 0.693147 2 1 1 2 4 TCGA-X6-A7WB-01A-11R-A355-07 WDFY2~AL109749.1 fusion "WDFY2," "AL109749.1," chr13~chrX 52158960 131188659 16 ++ 2.393312 15 9 6 15 42 TCGA-X6-A7WB-01A-11R-A355-07 WDFY2~AL109749.1 fusion "WDFY2," "AL109749.1," chr13~chrX 52158960 131197461 2 ++ 0.693147 1 0 1 1 8 TCGA-DX-A6YZ-01A-12R-A355-07 BRF2~Nchr8~50057655 intergenic "BRF2," "-," chr8~chr8 37704372 50057655 51 -- 2.897012 46 14 32 46 94 TCGA-DX-A6YZ-01A-12R-A355-07 BRF2~Nchr8~50062003 intergenic "BRF2," "-," chr8~chr8 37704372 50062003 16 -- 2.512659 13 6 7 13 112 TCGA-DX-A6YZ-01A-12R-A355-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31237288 31323000 2 -- 0.693147 2 1 1 2 10 TCGA-DX-A6YZ-01A-12R-A355-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 238 -- 2.433528 208 85 123 208 108 TCGA-DX-A6YZ-01A-12R-A355-07 LLGL1~TLN2 fusion "LLGL1," "TLN2," chr17~chr15 18141923 63014552 4 ++ 1.039721 3 2 1 3 2 TCGA-DX-A6YZ-01A-12R-A355-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 63 -+ 2.540736 22 0 22 22 14 TCGA-DX-A6YZ-01A-12R-A355-07 Nchr12~74312978~SMAD3 intergenic "-," "SMAD3," chr12~chr15 74312978 67391106 2 -- 0.693147 1 0 1 1 8 TCGA-DX-A6YZ-01A-12R-A355-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 29 -+ 2.641534 27 20 7 27 120 TCGA-DX-A6YZ-01A-12R-A355-07 Nchr2~177065785~Nchr2~177065899 intergenic "-," "-," chr2~chr2 177065785 177065899 2 -- 0.693147 2 0 2 2 2 TCGA-DX-A6YZ-01A-12R-A355-07 Nchr2~177065789~Nchr2~177065905 intergenic "-," "-," chr2~chr2 177065789 177065905 6 -- 1.56071 6 0 6 6 2 TCGA-DX-A6YZ-01A-12R-A355-07 Nchr2~177065789~Nchr2~177065913 intergenic "-," "-," chr2~chr2 177065789 177065913 3 -- 1.098612 2 0 2 2 2 TCGA-DX-A6YZ-01A-12R-A355-07 Nchr2~81775871~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81775871 82075877 6 ++ 1.56071 5 3 2 5 20 TCGA-DX-A6YZ-01A-12R-A355-07 RAI1~Nchr12~73184026 intergenic "RAI1," "-," chr17~chr12 17627473 73184026 56 +- 2.83334 51 30 21 51 200 TCGA-DX-A6YZ-01A-12R-A355-07 RAI1~Nchr12~73185278 intergenic "RAI1," "-," chr17~chr12 17627473 73185278 7 +- 1.277034 6 6 0 6 50 TCGA-DX-A6YZ-01A-12R-A355-07 RAI1~Nchr12~73186113 intergenic "RAI1," "-," chr17~chr12 17627473 73186113 3 +- 1.098612 3 2 1 3 268 TCGA-DX-A6YZ-01A-12R-A355-07 SEC23B~NAPB fusion "SEC23B," "NAPB," chr20~chr20 18488634 23361954 4 +- 1.039721 3 0 3 3 2 TCGA-DX-A6YZ-01A-12R-A355-07 SMAD3~Nchr12~74300720 intergenic "SMAD3," "-," chr15~chr12 67418322 74300720 10 ++ 1.834372 9 6 3 9 22 TCGA-DX-A6YZ-01A-12R-A355-07 SMAD3~Nchr12~74300720 intergenic "SMAD3," "-," chr15~chr12 67430438 74300720 21 ++ 2.227438 19 18 1 19 64 TCGA-DX-A6YZ-01A-12R-A355-07 SMAD3~Nchr12~74300720 intergenic "SMAD3," "-," chr15~chr12 67391596 74300720 2 ++ 0.693147 2 1 1 2 16 TCGA-DX-A6YZ-01A-12R-A355-07 SMAD3~Nchr12~74300720 intergenic "SMAD3," "-," chr15~chr12 67391362 74300720 13 ++ 2.458311 13 10 3 13 98 TCGA-DX-A6YZ-01A-12R-A355-07 SMAD3~Nchr12~74307737 intergenic "SMAD3," "-," chr15~chr12 67391362 74307737 4 ++ 1.386294 3 2 1 3 46 TCGA-DX-A6YZ-01A-12R-A355-07 SMAD3~Nchr12~74307737 intergenic "SMAD3," "-," chr15~chr12 67430438 74307737 8 ++ 1.732868 6 5 1 6 40 TCGA-DX-A6YZ-01A-12R-A355-07 SMAD3~Nchr12~74307737 intergenic "SMAD3," "-," chr15~chr12 67418322 74307737 4 ++ 1.039721 4 2 2 4 4 TCGA-DX-A6YZ-01A-12R-A355-07 SMAD3~Nchr12~74312978 intergenic "SMAD3," "-," chr15~chr12 67391596 74312978 5 ++ 1.332179 3 2 1 3 12 TCGA-DX-A6YZ-01A-12R-A355-07 SMAD3~Nchr12~74312978 intergenic "SMAD3," "-," chr15~chr12 67391362 74312978 22 ++ 2.512437 20 1 19 20 40 TCGA-DX-A6YZ-01A-12R-A355-07 SMAD3~Nchr12~74312978 intergenic "SMAD3," "-," chr15~chr12 67430438 74312978 13 ++ 2.098147 11 2 9 11 30 TCGA-DX-A6YZ-01A-12R-A355-07 TRPM7~UNC13C fusion "TRPM7," "UNC13C," chr15~chr15 50978728 54755584 26 -+ 2.334899 20 5 15 20 80 TCGA-DX-A6YZ-01A-12R-A355-07 USP8~TSPAN3 fusion "USP8," "TSPAN3," chr15~chr15 50763992 77348597 108 +- 2.683032 101 39 62 101 128 TCGA-X6-A7WA-01A-12R-A355-07 A2M~PZP fusion "A2M," "PZP," chr12~chr12 9227312 9307397 6 -- 1.329661 6 6 0 6 6 TCGA-X6-A7WA-01A-12R-A355-07 BNC2~C9orf92 fusion "BNC2," "C9orf92," chr9~chr9 16727795 16204036 3 -- 1.098612 3 0 3 3 4 TCGA-X6-A7WA-01A-12R-A355-07 CTDP1~NFATC1 fusion "CTDP1," "NFATC1," chr18~chr18 77475528 77287528 7 ++ 1.747868 7 2 5 7 40 TCGA-X6-A7WA-01A-12R-A355-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 70 -- 2.342203 69 68 1 69 30 TCGA-X6-A7WA-01A-12R-A355-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 186 -- 2.084885 185 0 185 185 56 TCGA-X6-A7WA-01A-12R-A355-07 HLA-L~Nchr6~29864828 intergenic "HLA-L," "-," chr6~chr6 30229256 29864828 318 ++ 2.353036 20 19 1 20 24 TCGA-X6-A7WA-01A-12R-A355-07 HTRA1~Nchr10~115814830 intergenic "HTRA1," "-," chr10~chr10 124266918 115814830 2 ++ 0.693147 2 2 0 2 6 TCGA-X6-A7WA-01A-12R-A355-07 HTRA1~Nchr10~115826386 intergenic "HTRA1," "-," chr10~chr10 124266918 115826386 24 ++ 2.441303 21 11 10 21 118 TCGA-X6-A7WA-01A-12R-A355-07 Nchr10~115826376~HTRA1 intergenic "-," "HTRA1," chr10~chr10 115826376 124266918 12 -- 2.138333 10 5 5 10 126 TCGA-X6-A7WA-01A-12R-A355-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 123 -+ 2.540689 64 0 64 64 94 TCGA-X6-A7WA-01A-12R-A355-07 Nchr12~24366277~SOX5 intergenic "-," "SOX5," chr12~chr12 24366277 24048958 6 -- 1.791759 4 3 1 4 2 TCGA-X6-A7WA-01A-12R-A355-07 Nchr15~21916043~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21916043 20876597 4 -- 1.386294 3 0 3 3 2 TCGA-X6-A7WA-01A-12R-A355-07 Nchr1~76081538~SLC44A5 intergenic "-," "SLC44A5," chr1~chr1 76081538 75805315 7 -- 1.747868 6 5 1 6 2 TCGA-X6-A7WA-01A-12R-A355-07 Nchr6~29896012~HLA-B intergenic "-," "HLA-B," chr6~chr6 29896012 31323168 3 -- 0.636514 2 1 1 2 2 TCGA-X6-A7WA-01A-12R-A355-07 Nchr6~8558876~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8558876 8784424 6 ++ 1.791759 4 0 4 4 2 TCGA-X6-A7WA-01A-12R-A355-07 Nchr7~140912504~Nchr7~141137408 intergenic "-," "-," chr7~chr7 140912504 141137408 8 ++ 1.732868 7 3 4 7 8 TCGA-X6-A7WA-01A-12R-A355-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40768381 9 ++ 2.043192 5 0 5 5 8 TCGA-X6-A7WA-01A-12R-A355-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 92 ++ 2.893447 24 3 21 24 8 TCGA-X6-A7WA-01A-12R-A355-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40899915 2 ++ 0.693147 2 0 2 2 6 TCGA-X6-A7WA-01A-12R-A355-07 PDZD8~C10orf46 fusion "PDZD8," "C10orf46," chr10~chr10 119078383 120433972 24 -- 2.452577 22 9 13 22 36 TCGA-X6-A7WA-01A-12R-A355-07 PDZD8~Nchr10~120359444 intergenic "PDZD8," "-," chr10~chr10 119078383 120359444 4 -- 1.386294 3 1 2 3 4 TCGA-X6-A7WA-01A-12R-A355-07 RP11-371M22.1~Nchr5~113696642 intergenic "RP11-371M22.1," "-," chr5~chr5 113392868 113696642 5 ++ 1.609438 4 4 0 4 16 TCGA-X6-A7WA-01A-12R-A355-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 5 ++ 1.609438 5 4 1 5 20 TCGA-X6-A7WA-01A-12R-A355-07 TAB3~DMD fusion "TAB3," "DMD," chrX~chrX 30870895 31366751 3 -- 0.636514 3 3 0 3 2 TCGA-DX-A6YV-01A-12R-A355-07 AC011497.1~Nchr19~43155239 intergenic "AC011497.1," "-," chr19~chr19 42929356 43155239 5 ++ 1.609438 5 4 1 5 6 TCGA-DX-A6YV-01A-12R-A355-07 ATF6~PLCL2 fusion "ATF6," "AC091491.2,PLCL2," chr1~chr3 161833102 17084405 13 +- 1.778233 13 5 8 13 20 TCGA-DX-A6YV-01A-12R-A355-07 C19orf2~RHPN2 fusion "C19orf2," "RHPN2," chr19~chr19 30433571 33484959 14 +- 2.205598 14 0 14 14 22 TCGA-DX-A6YV-01A-12R-A355-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264376 94050330 3 -+ 1.098612 2 1 1 2 10 TCGA-DX-A6YV-01A-12R-A355-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266264 94054922 2 -+ 0.693147 2 0 2 2 4 TCGA-DX-A6YV-01A-12R-A355-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266738 189859032 14 -+ 0.655976 10 10 0 10 4 TCGA-DX-A6YV-01A-12R-A355-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94056373 48270211 2 +- 0.693147 2 1 1 2 2 TCGA-DX-A6YV-01A-12R-A355-07 CSTF1~MED13 fusion "CSTF1," "MED13," chr20~chr17 54978854 60050249 4 +- 1.386294 4 1 3 4 10 TCGA-DX-A6YV-01A-12R-A355-07 GLI2~SPOP fusion "GLI2," "SPOP," chr2~chr17 121685042 47700238 58 +- 2.78764 44 27 17 44 118 TCGA-DX-A6YV-01A-12R-A355-07 GLI2~SPOP fusion "GLI2," "SPOP," chr2~chr17 121555044 47700238 5 +- 1.609438 5 3 2 5 34 TCGA-DX-A6YV-01A-12R-A355-07 GLI2~SPOP fusion "GLI2," "SPOP," chr2~chr17 121685042 47714171 6 +- 1.56071 5 2 3 5 130 TCGA-DX-A6YV-01A-12R-A355-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 16 -- 2.187322 12 4 8 12 4 TCGA-DX-A6YV-01A-12R-A355-07 IFI16~UAP1 fusion "IFI16," "UAP1," chr1~chr1 158986490 162546567 56 ++ 2.916636 51 25 25 51 156 TCGA-DX-A6YV-01A-12R-A355-07 MYH10~FXR2 fusion "MYH10," "FXR2," chr17~chr17 8390751 7496212 10 -- 2.302585 9 2 7 9 10 TCGA-DX-A6YV-01A-12R-A355-07 Nchr10~77530612~C10orf11 intergenic "-," "C10orf11," chr10~chr10 77530612 77795766 8 ++ 2.079442 7 1 6 7 10 TCGA-DX-A6YV-01A-12R-A355-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 41 -+ 2.217329 19 0 19 19 28 TCGA-DX-A6YV-01A-12R-A355-07 Nchr11~89984485~Nchr11~90279922 intergenic "-," "-," chr11~chr11 89984485 90279922 2 ++ 0.693147 2 2 0 2 4 TCGA-DX-A6YV-01A-12R-A355-07 Nchr13~76509067~Nchr13~76841631 intergenic "-," "-," chr13~chr13 76509067 76841631 7 ++ 1.747868 7 5 2 7 6 TCGA-DX-A6YV-01A-12R-A355-07 Nchr14~28125649~Nchr14~27791347 intergenic "-," "-," chr14~chr14 28125649 27791347 5 -- 1.609438 5 4 1 5 4 TCGA-DX-A6YV-01A-12R-A355-07 Nchr18~20500725~Nchr18~20284883 intergenic "-," "-," chr18~chr18 20500725 20284883 3 -- 1.098612 3 3 0 3 6 TCGA-DX-A6YV-01A-12R-A355-07 Nchr18~37115422~Nchr18~36788753 intergenic "-," "-," chr18~chr18 37115422 36788753 5 -- 1.609438 4 4 0 4 10 TCGA-DX-A6YV-01A-12R-A355-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 3 -- 1.098612 3 1 2 3 6 TCGA-DX-A6YV-01A-12R-A355-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 19 -+ 2.552085 17 8 9 17 66 TCGA-DX-A6YV-01A-12R-A355-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145013721 2 -+ 0.693147 2 1 1 2 8 TCGA-DX-A6YV-01A-12R-A355-07 Nchr2~154265755~Nchr2~154589282 intergenic "-," "-," chr2~chr2 154265755 154589282 7 ++ 1.747868 4 3 1 4 8 TCGA-DX-A6YV-01A-12R-A355-07 Nchr2~177065929~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065929 177065788 2 ++ 0.693147 1 0 1 1 8 TCGA-DX-A6YV-01A-12R-A355-07 Nchr2~81775871~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81775871 82075877 9 ++ 1.889159 6 3 3 6 20 TCGA-DX-A6YV-01A-12R-A355-07 Nchr6~141219325~Nchr6~140972698 intergenic "-," "-," chr6~chr6 141219325 140972698 5 -- 0.950271 5 4 1 5 6 TCGA-DX-A6YV-01A-12R-A355-07 Nchr7~122851497~Nchr7~123096679 intergenic "-," "-," chr7~chr7 122851497 123096679 8 ++ 1.906155 8 1 7 8 22 TCGA-DX-A6YV-01A-12R-A355-07 Nchr8~94352404~RP11-88J22.1 intergenic "-," "RP11-88J22.1," chr8~chr8 94352404 94147040 3 -- 1.098612 2 0 2 2 2 TCGA-DX-A6YV-01A-12R-A355-07 NchrX~11074056~MID1 intergenic "-," "MID1," chrX~chrX 11074056 10535643 6 -- 1.329661 5 3 2 5 4 TCGA-DX-A6YV-01A-12R-A355-07 NchrX~64295792~NchrX~64586518 intergenic "-," "-," chrX~chrX 64295792 64586518 7 ++ 1.747868 7 3 4 7 4 TCGA-DX-A6YV-01A-12R-A355-07 PHC2~MFSD11 fusion "PHC2," "MFSD11," chr1~chr17 33815198 74763468 4 -+ 1.386294 4 0 4 4 6 TCGA-DX-A6YV-01A-12R-A355-07 PHC2~MFSD11 fusion "PHC2," "MFSD11," chr1~chr17 33814654 74763468 4 -+ 1.039721 4 2 2 4 44 TCGA-DX-A6YV-01A-12R-A355-07 PRMT2~Nchr21~48029023 intergenic "PRMT2," "-," chr21~chr21 48069651 48029023 2 +- 0.693147 2 1 1 2 6 TCGA-DX-A6YV-01A-12R-A355-07 RP1-34H18.1~NAV3 fusion "RP1-34H18.1," "NAV3," chr12~chr12 77966046 78334099 2 ++ 0.693147 2 0 2 2 10 TCGA-DX-A6YV-01A-12R-A355-07 RP11-328J2.1~Nchr7~119140163 intergenic "RP11-328J2.1," "-," chr7~chr7 119353720 119140163 2 -- 0.693147 2 0 2 2 48 TCGA-DX-A6YV-01A-12R-A355-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 3 ++ 0.636514 3 1 2 3 4 TCGA-DX-A6YV-01A-12R-A355-07 SLMO2~Nchr20~45837267 intergenic "SLMO2," "-," chr20~chr20 57617754 45837267 3 -+ 1.098612 3 2 1 3 2 TCGA-DX-A6YT-01A-21R-A355-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049717 48266594 2 +- 0.693147 2 1 1 2 4 TCGA-DX-A6YT-01A-21R-A355-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 275 -- 2.573775 273 272 1 273 68 TCGA-DX-A6YT-01A-21R-A355-07 MAP2K4~Nchr17~5663061 intergenic "MAP2K4," "-," chr17~chr17 11924318 5663061 15 ++ 1.894312 12 12 0 12 12 TCGA-DX-A6YT-01A-21R-A355-07 MAP2K4~Nchr17~5665544 intergenic "MAP2K4," "-," chr17~chr17 11924318 5665544 35 ++ 2.916372 31 29 2 31 44 TCGA-DX-A6YT-01A-21R-A355-07 MICB~MICA fusion "MICB," "MICA," chr6~chr6 31474914 31380102 6 ++ 1.242453 2 2 0 2 6 TCGA-DX-A6YT-01A-21R-A355-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 29 -+ 2.183932 15 0 15 15 26 TCGA-DX-A6YT-01A-21R-A355-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 19 -+ 2.232694 17 10 7 17 230 TCGA-DX-A6YT-01A-21R-A355-07 Nchr2~220934017~AC114765.1 intergenic "-," "AC114765.1," chr2~chr2 220934017 221186822 2 ++ 0.693147 2 0 2 2 2 TCGA-DX-A6YT-01A-21R-A355-07 Nchr9~33624650~Nchr9~33624745 intergenic "-," "-," chr9~chr9 33624650 33624745 3 -- 1.098612 3 3 0 3 2 TCGA-DX-A6YT-01A-21R-A355-07 RBM25~ACOT6 fusion "RBM25," "ACOT6," chr14~chr14 73550259 74083694 49 ++ 2.972428 46 24 22 46 108 TCGA-DX-A6YT-01A-21R-A355-07 RBM25~ACOT6 fusion "RBM25," "ACOT6," chr14~chr14 73550259 74083812 2 ++ 0.693147 2 1 1 2 24 TCGA-DX-A6YT-01A-21R-A355-07 SHC1~Nchr17~42306882 intergenic "SHC1," "-," chr1~chr17 154938544 42306882 2 ++ 0.693147 2 2 0 2 6 TCGA-DX-A6YT-01A-21R-A355-07 STXBP6~ZNF410 fusion "STXBP6," "ZNF410," chr14~chr14 25443871 74370663 30 -+ 2.424676 23 11 12 23 34 TCGA-DX-A6YT-01A-21R-A355-07 UTP6~SLC13A5 fusion "UTP6," "SLC13A5," chr17~chr17 30219279 6610475 5 -- 1.332179 5 3 2 5 6 TCGA-DX-A6YT-01A-21R-A355-07 ZCCHC4~C4orf52 fusion "ZCCHC4," "C4orf52," chr4~chr4 25317022 25929935 10 ++ 1.227529 10 8 2 10 16 TCGA-DX-A6YS-01A-12R-A355-07 ADAMTS5~CYYR1 fusion "ADAMTS5," "CYYR1," chr21~chr21 28327058 27852748 4 -- 1.386294 4 2 2 4 8 TCGA-DX-A6YS-01A-12R-A355-07 ADAMTS5~CYYR1 fusion "ADAMTS5," "CYYR1," chr21~chr21 28315699 27852748 57 -- 2.417233 54 14 40 54 64 TCGA-DX-A6YS-01A-12R-A355-07 ADAMTS5~Nchr21~27855726 intergenic "ADAMTS5," "-," chr21~chr21 28315699 27855726 9 -- 1.83102 9 4 5 9 24 TCGA-DX-A6YS-01A-12R-A355-07 ADAMTS5~Nchr21~28543481 intergenic "ADAMTS5," "-," chr21~chr21 28338443 28543481 8 ++ 1.732868 7 6 1 7 8 TCGA-DX-A6YS-01A-12R-A355-07 APPBP2~SETD2 fusion "APPBP2," "SETD2," chr17~chr3 58571827 47061330 21 -- 2.648438 18 6 12 18 24 TCGA-DX-A6YS-01A-12R-A355-07 BBS9~Nchr7~33900207 intergenic "BBS9," "-," chr7~chr7 33573788 33900207 8 ++ 1.906155 6 3 3 6 24 TCGA-DX-A6YS-01A-12R-A355-07 BBS9~Nchr7~33916664 intergenic "BBS9," "-," chr7~chr7 33644587 33916664 2 ++ 0.693147 2 2 0 2 8 TCGA-DX-A6YS-01A-12R-A355-07 BBS9~Nchr7~33916664 intergenic "BBS9," "-," chr7~chr7 33573788 33916664 3 ++ 0.636514 3 2 1 3 10 TCGA-DX-A6YS-01A-12R-A355-07 BMPER~Nchr6~69051412 intergenic "BMPER," "-," chr7~chr6 34097775 69051412 5 +- 1.609438 5 3 2 5 6 TCGA-DX-A6YS-01A-12R-A355-07 BMPER~Nchr6~69074165 intergenic "BMPER," "-," chr7~chr6 34097775 69074165 7 +- 1.747868 7 3 4 7 20 TCGA-DX-A6YS-01A-12R-A355-07 C1orf101~AC091969.1 fusion "C1orf101," "AC091969.1," chr1~chr5 244756880 152199860 6 +- 1.56071 2 2 0 2 4 TCGA-DX-A6YS-01A-12R-A355-07 C5orf32~Nchr5~108023751 intergenic "C5orf32," "-," chr5~chr5 139574237 108023751 18 +- 2.322188 15 5 10 15 58 TCGA-DX-A6YS-01A-12R-A355-07 CD59~Nchr1~245778722 intergenic "CD59," "-," chr11~chr1 33738916 245778722 4 -- 1.386294 4 0 4 4 4 TCGA-DX-A6YS-01A-12R-A355-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94053755 48273337 2 +- 0.693147 2 1 1 2 2 TCGA-DX-A6YS-01A-12R-A355-07 CSMD2~Nchr4~58872213 intergenic "CSMD2," "-," chr1~chr4 34401361 58872213 17 -- 2.18084 14 10 4 14 48 TCGA-DX-A6YS-01A-12R-A355-07 CTNNA1~C5orf32 fusion "CTNNA1," "C5orf32," chr5~chr5 138119061 139622890 31 ++ 2.908318 27 6 21 27 46 TCGA-DX-A6YS-01A-12R-A355-07 CTNNA1~Nchr5~145232507 intergenic "CTNNA1," "-," chr5~chr5 138119061 145232507 3 ++ 1.098612 3 2 1 3 12 TCGA-DX-A6YS-01A-12R-A355-07 DEM1~MTF1 fusion "DEM1," "MTF1," chr1~chr1 40974580 38323381 5 +- 1.332179 5 3 2 5 28 TCGA-DX-A6YS-01A-12R-A355-07 DEM1~MTF1 fusion "DEM1," "MTF1," chr1~chr1 40974549 38323381 3 +- 1.098612 3 3 0 3 22 TCGA-DX-A6YS-01A-12R-A355-07 EIF5~CTAGE5 fusion "EIF5," "CTAGE5," chr14~chr14 103807462 39796068 11 ++ 2.145842 8 4 4 8 6 TCGA-DX-A6YS-01A-12R-A355-07 ELMO1~Nchr18~76025618 intergenic "ELMO1," "-," chr7~chr18 37052904 76025618 2 -+ 0.693147 2 1 1 2 8 TCGA-DX-A6YS-01A-12R-A355-07 ELMO1~Nchr18~76029483 intergenic "ELMO1," "-," chr7~chr18 37052904 76029483 9 -+ 1.83102 8 5 3 8 30 TCGA-DX-A6YS-01A-12R-A355-07 FAM120B~NchrY~24426399 intergenic "FAM120B," "-," chr6~chrY 170639638 24426399 3 ++ 1.098612 3 3 0 3 10 TCGA-DX-A6YS-01A-12R-A355-07 FAM120B~NchrY~24426399 intergenic "FAM120B," "-," chr6~chrY 170667406 24426399 21 ++ 2.268535 20 10 10 20 64 TCGA-DX-A6YS-01A-12R-A355-07 GRAMD3~Nchr5~121007412 intergenic "GRAMD3," "-," chr5~chr5 125824584 121007412 9 +- 1.676988 9 3 6 9 26 TCGA-DX-A6YS-01A-12R-A355-07 GRB10~SCMH1 fusion "GRB10," "SCMH1," chr7~chr1 50682467 41494398 12 -- 1.791759 12 5 7 12 6 TCGA-DX-A6YS-01A-12R-A355-07 GRLF1~RP11-58O3.2 fusion "GRLF1," "RP11-58O3.2," chr19~chr8 47440665 112757671 8 ++ 1.732868 7 6 1 7 24 TCGA-DX-A6YS-01A-12R-A355-07 KIAA1211~Nchr4~56115273 intergenic "KIAA1211," "-," chr4~chr4 57138658 56115273 8 ++ 2.079442 8 3 5 8 20 TCGA-DX-A6YS-01A-12R-A355-07 KIAA1211~Nchr4~56127043 intergenic "KIAA1211," "-," chr4~chr4 57138658 56127043 5 ++ 1.05492 4 2 2 4 4 TCGA-DX-A6YS-01A-12R-A355-07 MACF1~Nchr18~23985979 intergenic "MACF1," "-," chr1~chr18 39934404 23985979 4 +- 1.386294 3 1 2 3 100 TCGA-DX-A6YS-01A-12R-A355-07 MACF1~Nchr18~23988764 intergenic "MACF1," "-," chr1~chr18 39934404 23988764 2 +- 0.693147 1 0 1 1 4 TCGA-DX-A6YS-01A-12R-A355-07 MBNL2~MADD fusion "MBNL2," "MADD," chr13~chr11 97928663 47330142 3 ++ 1.098612 3 2 1 3 18 TCGA-DX-A6YS-01A-12R-A355-07 MTF1~Nchr4~57999087 intergenic "MTF1," "-," chr1~chr4 38304297 57999087 5 -+ 1.609438 4 3 1 4 4 TCGA-DX-A6YS-01A-12R-A355-07 MTF1~RP11-12A1.1 fusion "MTF1," "RP11-12A1.1," chr1~chr4 38304297 58067299 7 -+ 1.94591 7 5 2 7 16 TCGA-DX-A6YS-01A-12R-A355-07 NBEAL2~Nchr9~95914525 intergenic "NBEAL2," "-," chr3~chr9 47040369 95914525 6 +- 1.56071 5 2 3 5 12 TCGA-DX-A6YS-01A-12R-A355-07 Nchr11~47213095~RPS20 intergenic "-," "RPS20," chr11~chr8 47213095 56986946 2 ++ 0.693147 2 0 2 2 184 TCGA-DX-A6YS-01A-12R-A355-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 29 -+ 2.498124 15 0 15 15 8 TCGA-DX-A6YS-01A-12R-A355-07 Nchr14~90085372~FOXN3 intergenic "-," "FOXN3," chr14~chr14 90085372 89878834 3 -- 0.636514 3 3 0 3 6 TCGA-DX-A6YS-01A-12R-A355-07 Nchr16~79619777~Nchr16~79246798 intergenic "-," "-," chr16~chr16 79619777 79246798 5 -- 1.609438 4 2 2 4 2 TCGA-DX-A6YS-01A-12R-A355-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151282 5 -- 1.609438 3 2 1 3 16 TCGA-DX-A6YS-01A-12R-A355-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 8 -- 2.079442 5 0 5 5 16 TCGA-DX-A6YS-01A-12R-A355-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 102 -+ 3.154915 92 58 34 92 660 TCGA-DX-A6YS-01A-12R-A355-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145013721 7 -+ 1.747868 6 4 2 6 50 TCGA-DX-A6YS-01A-12R-A355-07 Nchr2~177065788~Nchr2~177065931 intergenic "-," "-," chr2~chr2 177065788 177065931 3 -- 0.636514 3 0 3 3 16 TCGA-DX-A6YS-01A-12R-A355-07 Nchr2~177065929~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065929 177065788 6 ++ 1.56071 5 0 5 5 16 TCGA-DX-A6YS-01A-12R-A355-07 Nchr3~187872040~LPP intergenic "-," "LPP," chr3~chr3 187872040 188123900 6 ++ 1.011404 6 0 6 6 4 TCGA-DX-A6YS-01A-12R-A355-07 Nchr5~121037324~DIAPH1 intergenic "-," "DIAPH1," chr5~chr5 121037324 140953775 3 -- 0.636514 1 1 0 1 6 TCGA-DX-A6YS-01A-12R-A355-07 Nchr5~49650665~ACSL6 intergenic "-," "ACSL6,AC034228.4," chr5~chr5 49650665 131295298 12 ++ 1.791759 9 5 4 9 12 TCGA-DX-A6YS-01A-12R-A355-07 Nchr7~19344089~NchrX~82610741 intergenic "-," "-," chr7~chrX 19344089 82610741 2 ++ 0.693147 2 1 1 2 2 TCGA-DX-A6YS-01A-12R-A355-07 Nchr9~17906920~Nchr9~18163860 intergenic "-," "-," chr9~chr9 17906920 18163860 3 ++ 1.098612 2 2 0 2 2 TCGA-DX-A6YS-01A-12R-A355-07 Nchr9~28947816~LINGO2 intergenic "-," "LINGO2," chr9~chr9 28947816 28670278 7 -- 1.94591 1 1 0 1 6 TCGA-DX-A6YS-01A-12R-A355-07 NchrX~73494177~NchrX~73251648 intergenic "-," "-," chrX~chrX 73494177 73251648 3 -- 1.098612 3 2 1 3 16 TCGA-DX-A6YS-01A-12R-A355-07 NchrX~73494177~NchrX~73251651 intergenic "-," "-," chrX~chrX 73494177 73251651 2 -- 0.693147 2 2 0 2 8 TCGA-DX-A6YS-01A-12R-A355-07 NchrX~73494177~NchrX~73251675 intergenic "-," "-," chrX~chrX 73494177 73251675 5 -- 1.609438 5 3 2 5 18 TCGA-DX-A6YS-01A-12R-A355-07 NchrX~73494177~NchrX~73289419 intergenic "-," "-," chrX~chrX 73494177 73289419 4 -- 1.386294 4 3 1 4 4 TCGA-DX-A6YS-01A-12R-A355-07 PIK3C2A~Nchr11~17513567 intergenic "PIK3C2A," "-," chr11~chr11 17229395 17513567 5 -+ 1.332179 4 2 2 4 20 TCGA-DX-A6YS-01A-12R-A355-07 RALA~Nchr18~75531520 intergenic "RALA," "-," chr7~chr18 39663424 75531520 5 ++ 1.332179 4 4 0 4 40 TCGA-DX-A6YS-01A-12R-A355-07 RALA~Nchr18~75532507 intergenic "RALA," "-," chr7~chr18 39663424 75532507 11 ++ 2.145842 10 6 4 10 54 TCGA-DX-A6YS-01A-12R-A355-07 RALA~Nchr18~75540554 intergenic "RALA," "-," chr7~chr18 39663424 75540554 9 ++ 2.043192 9 8 1 9 42 TCGA-DX-A6YS-01A-12R-A355-07 RALA~Nchr18~75578372 intergenic "RALA," "-," chr7~chr18 39663424 75578372 15 ++ 2.02623 15 6 9 15 16 TCGA-DX-A6YS-01A-12R-A355-07 RP11-13N12.1~MSR1 fusion "RP11-13N12.1," "MSR1," chr8~chr8 16612860 16372347 3 -- 0.636514 3 3 0 3 6 TCGA-DX-A6YS-01A-12R-A355-07 RP11-1E3.1~RP11-455B3.1 fusion "RP11-1E3.1," "RP11-455B3.1," chr5~chr5 97006388 97217134 3 ++ 1.098612 3 1 2 3 6 TCGA-DX-A6YS-01A-12R-A355-07 RP11-328J2.1~Nchr7~119140163 intergenic "RP11-328J2.1," "-," chr7~chr7 119353720 119140163 6 -- 1.56071 5 4 1 5 24 TCGA-DX-A6YS-01A-12R-A355-07 RPS12~Nchr6~151547126 intergenic "RPS12," "-," chr6~chr6 133135708 151547126 3 -- 0.636514 3 0 3 3 566 TCGA-DX-A6YS-01A-12R-A355-07 SEMA3E~Nchr7~83330983 intergenic "SEMA3E," "-," chr7~chr7 83119590 83330983 3 ++ 1.098612 3 2 1 3 12 TCGA-DX-A6YS-01A-12R-A355-07 SOX6~ACSL6 fusion "SOX6," "ACSL6,AC034228.4," chr11~chr5 16628088 131295298 9 -+ 1.889159 7 4 3 7 14 TCGA-DX-A6YS-01A-12R-A355-07 SOX6~ACSL6 fusion "SOX6," "ACSL6,AC034228.4," chr11~chr5 16633628 131295298 3 -+ 1.098612 2 1 1 2 2 TCGA-DX-A6YS-01A-12R-A355-07 SOX6~ACSL6 fusion "SOX6," "ACSL6,AC034228.4," chr11~chr5 16627448 131295298 54 -+ 2.915264 50 19 31 50 66 TCGA-DX-A6YS-01A-12R-A355-07 SOX6~ACSL6 fusion "SOX6," "ACSL6,AC034228.4," chr11~chr5 16625602 131295298 17 -+ 2.588573 13 7 6 13 22 TCGA-DX-A6YS-01A-12R-A355-07 SOX6~ACSL6 fusion "SOX6," "ACSL6,AC034228.4," chr11~chr5 16628401 131295298 4 -+ 1.039721 4 2 2 4 2 TCGA-DX-A6YS-01A-12R-A355-07 SOX6~ACSL6 fusion "SOX6," "ACSL6,AC034228.4," chr11~chr5 16628892 131295298 27 -+ 2.743635 26 13 13 26 44 TCGA-DX-A6YS-01A-12R-A355-07 SOX6~Nchr5~49650518 intergenic "SOX6," "-," chr11~chr5 16627448 49650518 2 -+ 0.693147 1 0 1 1 10 TCGA-DX-A6YS-01A-12R-A355-07 SRFBP1~Nchr5~123395641 intergenic "SRFBP1," "-," chr5~chr5 121330365 123395641 6 +- 1.56071 6 3 3 6 12 TCGA-DX-A6YS-01A-12R-A355-07 STX5~TAF6L fusion "STX5," "TAF6L," chr11~chr11 62591638 62543243 4 -+ 1.386294 4 2 2 4 2 TCGA-DX-A6YS-01A-12R-A355-07 TRIM44~Nchr1~248345841 intergenic "TRIM44," "-," chr11~chr1 35747711 248345841 12 +- 1.86368 11 4 7 11 46 TCGA-DX-A6YS-01A-12R-A355-07 VMP1~Nchr17~10155946 intergenic "VMP1," "-," chr17~chr17 57785109 10155946 20 +- 2.441215 19 16 3 19 78 TCGA-DX-A6YR-01A-33R-A355-07 ARHGAP32~AP001347.6 fusion "ARHGAP32," "AP001347.6," chr11~chr21 129034214 15515830 4 -+ 1.386294 3 0 3 3 10 TCGA-DX-A6YR-01A-33R-A355-07 CLOCK~Nchr4~36679941 intergenic "CLOCK," "-," chr4~chr4 56348906 36679941 4 -+ 1.039721 4 0 4 4 4 TCGA-DX-A6YR-01A-33R-A355-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049717 48269183 3 +- 0.636514 3 1 2 3 4 TCGA-DX-A6YR-01A-33R-A355-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94056607 48270054 3 +- 1.098612 3 2 1 3 6 TCGA-DX-A6YR-01A-33R-A355-07 FAM98A~BRE fusion "FAM98A," "BRE," chr2~chr2 33820556 28460069 6 -+ 1.791759 5 1 4 5 12 TCGA-DX-A6YR-01A-33R-A355-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 81 -- 2.131958 81 80 1 81 42 TCGA-DX-A6YR-01A-33R-A355-07 HMBOX1~MCM3 fusion "HMBOX1," "MCM3," chr8~chr6 28748195 52134024 37 +- 2.803131 34 21 13 34 74 TCGA-DX-A6YR-01A-33R-A355-07 HOOK3~Nchr4~63815583 intergenic "HOOK3," "-," chr8~chr4 42761401 63815583 6 ++ 1.791759 6 3 3 6 10 TCGA-DX-A6YR-01A-33R-A355-07 KB-1995A5.13~Nchr13~86598672 intergenic "SNRPD3,KB-1995A5.13,KB-1995A5.13," "-," chr22~chr13 24964144 86598672 18 +- 2.245172 17 7 10 17 22 TCGA-DX-A6YR-01A-33R-A355-07 KB-1995A5.13~Nchr13~86600768 intergenic "SNRPD3,KB-1995A5.13,KB-1995A5.13," "-," chr22~chr13 24964144 86600768 6 +- 1.011404 6 4 2 6 6 TCGA-DX-A6YR-01A-33R-A355-07 NLRP5~Nchr9~105108182 intergenic "NLRP5," "-," chr19~chr9 56531797 105108182 12 ++ 1.907284 11 4 7 11 12 TCGA-DX-A6YR-01A-33R-A355-07 NRIP1~AP000472.3 fusion "NRIP1," "AP000472.3," chr21~chr21 16386665 23305919 2 -- 0.693147 2 1 1 2 20 TCGA-DX-A6YR-01A-33R-A355-07 NRIP1~AP000472.3 fusion "NRIP1," "AP000472.3," chr21~chr21 16415816 23305919 2 -- 0.693147 2 2 0 2 8 TCGA-DX-A6YR-01A-33R-A355-07 NRIP1~AP000472.3 fusion "NRIP1," "AP000472.3," chr21~chr21 16386665 23311447 2 -- 0.693147 2 2 0 2 20 TCGA-DX-A6YR-01A-33R-A355-07 NRIP1~DSCAM fusion "NRIP1," "DSCAM," chr21~chr21 16386665 41455933 13 -- 2.031759 9 8 1 9 8 TCGA-DX-A6YR-01A-33R-A355-07 NRIP1~Nchr21~23203707 intergenic "NRIP1," "-," chr21~chr21 16386665 23203707 5 -- 1.609438 5 3 2 5 14 TCGA-DX-A6YR-01A-33R-A355-07 NRIP1~Nchr21~23203707 intergenic "NRIP1," "-," chr21~chr21 16415816 23203707 2 -- 0.693147 2 1 1 2 4 TCGA-DX-A6YR-01A-33R-A355-07 NRIP1~Nchr21~40389707 intergenic "NRIP1," "-," chr21~chr21 16386665 40389707 5 -- 1.609438 4 0 4 4 6 TCGA-DX-A6YR-01A-33R-A355-07 NRIP1~Nchr21~40484051 intergenic "NRIP1," "-," chr21~chr21 16386665 40484051 4 -- 1.386294 4 2 2 4 2 TCGA-DX-A6YR-01A-33R-A355-07 NRIP1~Nchr21~40484051 intergenic "NRIP1," "-," chr21~chr21 16415816 40484051 3 -- 1.098612 2 0 2 2 6 TCGA-DX-A6YR-01A-33R-A355-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 14 -+ 2.106577 7 0 7 7 10 TCGA-DX-A6YR-01A-33R-A355-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 3 -- 1.098612 2 1 1 2 4 TCGA-DX-A6YR-01A-33R-A355-07 Nchr1~10507~Nchr18~2314391 intergenic "-," "-," chr1~chr18 10507 2314391 13 -+ 2.351673 12 6 6 12 30 TCGA-DX-A6YR-01A-33R-A355-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 94 -+ 3.039359 83 43 39 83 202 TCGA-DX-A6YR-01A-33R-A355-07 Nchr1~148000671~SEC22B intergenic "-," "SEC22B," chr1~chr1 148000671 145109524 2 -+ 0.693147 2 1 1 2 4 TCGA-DX-A6YR-01A-33R-A355-07 Nchr21~17603435~Nchr21~17907194 intergenic "-," "-," chr21~chr21 17603435 17907194 10 +- 1.834372 7 5 2 7 18 TCGA-DX-A6YR-01A-33R-A355-07 Nchr21~17603435~Nchr21~25033026 intergenic "-," "-," chr21~chr21 17603435 25033026 12 +- 2.369382 11 7 4 11 24 TCGA-DX-A6YR-01A-33R-A355-07 Nchr21~17603435~Nchr21~25063748 intergenic "-," "-," chr21~chr21 17603435 25063748 8 +- 1.906155 4 3 1 4 32 TCGA-DX-A6YR-01A-33R-A355-07 Nchr6~151546858~RPS12 intergenic "-," "RPS12," chr6~chr6 151546858 133138121 3 ++ 1.098612 1 0 1 1 214 TCGA-DX-A6YR-01A-33R-A355-07 NchrX~22670810~RP11-40F8.2 intergenic "-," "RP11-40F8.2," chrX~chrX 22670810 22407837 2 -- 0.693147 2 0 2 2 2 TCGA-DX-A6YR-01A-33R-A355-07 PBX1~RFWD2 fusion "PBX1," "RFWD2," chr1~chr1 164532548 175958615 7 +- 1.351784 7 4 3 7 22 TCGA-DX-A6YR-01A-33R-A355-07 PCSK5~Nchr9~77852940 intergenic "PCSK5," "-," chr9~chr9 78641953 77852940 5 +- 1.609438 5 3 2 5 4 TCGA-DX-A6YR-01A-33R-A355-07 PRKDC~Nchr6~53124835 intergenic "PRKDC," "-," chr8~chr6 48841652 53124835 10 -+ 1.834372 9 4 5 9 10 TCGA-DX-A6YR-01A-33R-A355-07 PRKDC~Nchr6~53126506 intergenic "PRKDC," "-," chr8~chr6 48841652 53126506 5 -+ 1.609438 5 1 4 5 4 TCGA-DX-A6YR-01A-33R-A355-07 SMARCB1~Nchr18~43004121 intergenic "SMARCB1," "-," chr22~chr18 24167602 43004121 4 +- 1.039721 3 2 1 3 6 TCGA-DX-A6YR-01A-33R-A355-07 TSC2~Nchr16~9270174 intergenic "TSC2," "-," chr16~chr16 2124390 9270174 4 +- 1.386294 4 1 3 4 6 TCGA-DX-A6YR-01A-33R-A355-07 TTC28~PIWIL3 fusion "TTC28," "PIWIL3," chr22~chr22 29075610 25115555 5 -- 0.950271 5 5 0 5 10 TCGA-DX-A6YR-01A-33R-A355-07 USP25~Nchr21~26513573 intergenic "USP25," "-," chr21~chr21 17138460 26513573 19 +- 2.451583 13 7 6 13 26 TCGA-DX-A6YR-01A-33R-A355-07 USP38~RIT2 fusion "USP38," "RIT2," chr4~chr18 144109114 40323685 41 +- 2.639874 36 26 10 36 110 TCGA-DX-A6YR-01A-33R-A355-07 VASN~TSC2 fusion "VASN," "TSC2," chr16~chr16 4432288 2120457 22 ++ 2.752192 20 15 5 20 42 TCGA-DX-A6YR-01A-33R-A355-07 VASN~TSC2 fusion "VASN," "TSC2," chr16~chr16 4432976 2120457 3 ++ 1.098612 2 0 2 2 6 TCGA-DX-A6YR-01A-33R-A355-07 XYLT1~Nchr10~109197554 intergenic "XYLT1," "-," chr16~chr10 17352845 109197554 4 -+ 1.386294 4 3 1 4 12 TCGA-SI-A71Q-01A-12R-A33J-07 ABL1~Nchr9~117613163 intergenic "ABL1," "-," chr9~chr9 133589842 117613163 5 ++ 0.950271 5 2 3 5 6 TCGA-SI-A71Q-01A-12R-A33J-07 AC090774.1~Nchr7~124580334 intergenic "AC090774.1," "-," chr17~chr7 20771998 124580334 30 ++ 2.488328 24 13 11 24 36 TCGA-SI-A71Q-01A-12R-A33J-07 ACN9~LAMB1 fusion "ACN9," "LAMB1," chr7~chr7 96747209 107596075 2 +- 0.693147 2 1 1 2 6 TCGA-SI-A71Q-01A-12R-A33J-07 ARHGAP31~CCDC37 fusion "ARHGAP31," "CCDC37," chr3~chr3 119013851 126114785 2 ++ 0.693147 2 0 2 2 46 TCGA-SI-A71Q-01A-12R-A33J-07 ARHGAP31~CCDC37 fusion "ARHGAP31," "CCDC37," chr3~chr3 119013851 126126015 12 ++ 2.253858 11 6 5 11 44 TCGA-SI-A71Q-01A-12R-A33J-07 ASPH~Nchr11~37991177 intergenic "ASPH," "-," chr8~chr11 62563609 37991177 7 -- 1.94591 7 3 4 7 50 TCGA-SI-A71Q-01A-12R-A33J-07 ASPH~Nchr6~45347587 intergenic "ASPH," "-," chr8~chr6 62563609 45347587 5 -- 1.609438 5 1 4 5 16 TCGA-SI-A71Q-01A-12R-A33J-07 ASPH~Nchr6~45347587 intergenic "ASPH," "-," chr8~chr6 62559309 45347587 9 -- 2.043192 8 3 5 8 20 TCGA-SI-A71Q-01A-12R-A33J-07 BBS9~Nchr7~33900207 intergenic "BBS9," "-," chr7~chr7 33573788 33900207 5 ++ 1.332179 4 2 2 4 6 TCGA-SI-A71Q-01A-12R-A33J-07 C19orf24~CREB3L3 fusion "C19orf24,AC004258.1,C19orf24," "CREB3L3," chr19~chr19 1277298 4168348 17 ++ 2.3947 17 6 11 17 36 TCGA-SI-A71Q-01A-12R-A33J-07 C19orf42~EPS15L1 fusion "C19orf42," "EPS15L1," chr19~chr19 16757931 16528915 6 -- 1.791759 5 2 3 5 14 TCGA-SI-A71Q-01A-12R-A33J-07 C19orf42~EPS15L1 fusion "C19orf42," "EPS15L1," chr19~chr19 16757907 16528915 6 -- 1.791759 6 3 3 6 22 TCGA-SI-A71Q-01A-12R-A33J-07 C1orf196~KAZN fusion "C1orf196," "KAZN," chr1~chr1 14507087 14925479 2 ++ 0.693147 1 0 1 1 12 TCGA-SI-A71Q-01A-12R-A33J-07 CD83~EHF fusion "CD83," "EHF," chr6~chr11 14118296 34664175 9 ++ 1.889159 8 7 1 8 8 TCGA-SI-A71Q-01A-12R-A33J-07 CDKN2A~Nchr9~21653669 intergenic "CDKN2A," "-," chr9~chr9 21970901 21653669 5 -- 1.609438 5 2 3 5 12 TCGA-SI-A71Q-01A-12R-A33J-07 CDKN2A~Nchr9~21663149 intergenic "CDKN2A," "-," chr9~chr9 21994138 21663149 8 -- 1.906155 7 4 3 7 8 TCGA-SI-A71Q-01A-12R-A33J-07 CDKN2A~Nchr9~21663149 intergenic "CDKN2A," "-," chr9~chr9 21970901 21663149 13 -- 2.458311 12 8 4 12 12 TCGA-SI-A71Q-01A-12R-A33J-07 COG5~Nchr12~84905760 intergenic "COG5," "-," chr7~chr12 106944032 84905760 6 +- 1.56071 4 3 1 4 6 TCGA-SI-A71Q-01A-12R-A33J-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266741 94034193 3 -+ 0.636514 1 0 1 1 12 TCGA-SI-A71Q-01A-12R-A33J-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266755 94049739 4 -+ 1.039721 4 0 4 4 30 TCGA-SI-A71Q-01A-12R-A33J-07 CPAMD8~Nchr3~162016211 intergenic "CPAMD8," "-," chr19~chr3 17025234 162016211 6 -+ 1.56071 6 4 2 6 4 TCGA-SI-A71Q-01A-12R-A33J-07 CPSF6~RPL30 fusion "CPSF6," "RPL30,KB-1208A12.3,RPL30," chr12~chr8 69656342 99054078 2 +- 0.693147 2 2 0 2 4 TCGA-SI-A71Q-01A-12R-A33J-07 CTD-2140B24.4~LPAR1 fusion "CTD-2140B24.4,ZNF268,CTD-2140B24.4,ZNF268," "LPAR1," chr12~chr9 133758616 113704448 3 +- 1.098612 3 3 0 3 8 TCGA-SI-A71Q-01A-12R-A33J-07 EFCAB11~Nchr14~90095480 intergenic "EFCAB11," "-," chr14~chr14 90397885 90095480 2 -- 0.693147 2 1 1 2 2 TCGA-SI-A71Q-01A-12R-A33J-07 EPS15L1~CIDECP fusion "EPS15L1," "CIDECP," chr19~chr3 16524584 10065431 2 -- 0.693147 1 1 0 1 6 TCGA-SI-A71Q-01A-12R-A33J-07 GAS2~DCDC5 fusion "GAS2," "DCDC5," chr11~chr11 22647679 30852916 3 +- 1.098612 3 0 3 3 8 TCGA-SI-A71Q-01A-12R-A33J-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 29 -- 2.239837 29 0 28 29 6 TCGA-SI-A71Q-01A-12R-A33J-07 HNRNPM~DMD fusion "HNRNPM," "DMD," chr19~chrX 8530399 31986631 38 +- 2.852879 37 18 19 37 86 TCGA-SI-A71Q-01A-12R-A33J-07 LAMB1~HBP1 fusion "LAMB1," "HBP1," chr7~chr7 107601651 106820324 118 -+ 3.037723 113 82 29 113 282 TCGA-SI-A71Q-01A-12R-A33J-07 LRRCC1~Nchr6~39083474 intergenic "LRRCC1," "-," chr8~chr6 86025334 39083474 3 +- 1.098612 2 2 0 2 8 TCGA-SI-A71Q-01A-12R-A33J-07 MAST2~Nchr1~45255566 intergenic "MAST2," "-," chr1~chr1 46495910 45255566 19 +- 2.333197 16 5 11 16 36 TCGA-SI-A71Q-01A-12R-A33J-07 NAT10~Nchr6~14676707 intergenic "NAT10," "-," chr11~chr6 34145947 14676707 3 +- 1.098612 3 1 2 3 4 TCGA-SI-A71Q-01A-12R-A33J-07 NAT10~Nchr6~14678628 intergenic "NAT10," "-," chr11~chr6 34145947 14678628 2 +- 0.693147 2 1 1 2 8 TCGA-SI-A71Q-01A-12R-A33J-07 NAT10~RP11-22P4.1 fusion "NAT10," "RP11-22P4.1," chr11~chr11 34145402 28420335 3 ++ 0.636514 3 2 1 3 4 TCGA-SI-A71Q-01A-12R-A33J-07 NBN~Nchr8~90600279 intergenic "NBN," "-," chr8~chr8 90976638 90600279 5 -- 1.332179 5 1 4 5 26 TCGA-SI-A71Q-01A-12R-A33J-07 NBN~Nchr8~90608741 intergenic "NBN," "-," chr8~chr8 90976638 90608741 48 -- 2.872473 45 25 20 45 128 TCGA-SI-A71Q-01A-12R-A33J-07 NCOA2~Nchr8~77919044 intergenic "NCOA2," "-," chr8~chr8 71208979 77919044 9 -+ 2.043192 6 1 5 6 8 TCGA-SI-A71Q-01A-12R-A33J-07 NCRNA00238~Nchr14~66584657 intergenic "NCRNA00238," "-," chr14~chr14 66962980 66584657 5 -- 1.609438 3 0 3 3 6 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr10~3361048~Nchr10~3790880 intergenic "-," "-," chr10~chr10 3361048 3790880 3 ++ 1.098612 3 1 2 3 44 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr10~65819965~Nchr10~66061276 intergenic "-," "-," chr10~chr10 65819965 66061276 2 ++ 0.693147 1 0 1 1 4 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr10~66061412~Nchr10~66451199 intergenic "-," "-," chr10~chr10 66061412 66451199 3 ++ 1.098612 3 2 1 3 4 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr11~47213097~RPS20 intergenic "-," "RPS20," chr11~chr8 47213097 56986962 3 +- 1.098612 3 0 3 3 36 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 101 -+ 2.598165 51 0 51 51 32 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr12~24366277~SOX5 intergenic "-," "SOX5," chr12~chr12 24366277 24048958 4 -- 1.386294 3 3 0 3 4 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr13~76509067~Nchr13~76841631 intergenic "-," "-," chr13~chr13 76509067 76841631 2 ++ 0.693147 2 1 1 2 4 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr14~28125649~Nchr14~27791347 intergenic "-," "-," chr14~chr14 28125649 27791347 6 -- 1.242453 6 2 4 6 4 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr15~21905473~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21905473 20876597 2 -- 0.693147 2 0 2 2 18 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr15~21905477~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21905477 20876597 9 -- 1.889159 9 4 5 9 22 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 10 ++ 1.748067 8 3 5 8 18 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 15 ++ 2.430791 14 6 8 14 10 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr17~22069237~Nchr15~20876597 intergenic "-," "-," chr17~chr15 22069237 20876597 4 -- 1.386294 4 4 0 4 4 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr17~25346556~Nchr1~238143079 intergenic "-," "-," chr17~chr1 25346556 238143079 4 -- 1.039721 3 3 0 3 6 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151282 2 -- 0.693147 1 0 1 1 10 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 5 -- 1.332179 5 4 1 5 10 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 21 -+ 2.75555 19 12 7 19 122 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr1~187042156~RP11-445P19.1 intergenic "-," "RP11-445P19.1," chr1~chr1 187042156 187412760 4 ++ 1.386294 1 1 0 1 10 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr20~12164363~Nchr20~12630484 intergenic "-," "-," chr20~chr20 12164363 12630484 5 ++ 1.609438 1 0 1 1 2 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr2~122702023~Nchr2~123281160 intergenic "-," "-," chr2~chr2 122702023 123281160 4 ++ 0.562335 3 1 2 3 2 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr2~190210951~COL5A2 intergenic "-," "COL5A2," chr2~chr2 190210951 189975175 2 -- 0.693147 1 1 0 1 6 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr3~137432556~Nchr3~137060637 intergenic "-," "-," chr3~chr3 137432556 137060637 3 -- 1.098612 2 0 2 2 2 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr3~147638185~C3orf30 intergenic "-," "C3orf30," chr3~chr3 147638185 118878740 3 ++ 1.098612 1 1 0 1 6 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr3~180893371~Nchr3~181281508 intergenic "-," "-," chr3~chr3 180893371 181281508 2 ++ 0.693147 2 1 1 2 4 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr3~80121934~Nchr3~80356744 intergenic "-," "-," chr3~chr3 80121934 80356744 12 ++ 1.748155 11 10 1 11 14 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr5~44395451~Nchr5~44613459 intergenic "-," "-," chr5~chr5 44395451 44613459 3 ++ 1.098612 3 0 3 3 8 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr5~44395451~Nchr5~44615143 intergenic "-," "-," chr5~chr5 44395451 44615143 3 ++ 0.636514 3 3 0 3 10 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr6~72490124~RIMS1 intergenic "-," "RIMS1," chr6~chr6 72490124 72806652 7 ++ 1.747868 6 5 1 6 2 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr6~82767656~RP11-379B8.1 intergenic "-," "RP11-379B8.1," chr6~chr6 82767656 82555626 4 -- 1.386294 3 3 0 3 2 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr7~130422751~Nchr7~130623999 intergenic "-," "-," chr7~chr7 130422751 130623999 2 ++ 0.693147 2 2 0 2 12 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr8~80182258~Nchr8~79858921 intergenic "-," "-," chr8~chr8 80182258 79858921 6 -- 1.56071 5 3 2 5 4 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr9~18163979~ADAMTSL1 intergenic "-," "ADAMTSL1," chr9~chr9 18163979 18504827 3 ++ 1.098612 2 0 2 2 6 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr9~31973110~Nchr9~32267638 intergenic "-," "-," chr9~chr9 31973110 32267638 3 ++ 1.098612 1 0 1 1 4 TCGA-SI-A71Q-01A-12R-A33J-07 Nchr9~92470507~RP5-1050E16.2 intergenic "-," "RP5-1050E16.2," chr9~chr9 92470507 92522698 3 ++ 1.098612 2 1 1 2 8 TCGA-SI-A71Q-01A-12R-A33J-07 NchrX~124318557~ODZ1 intergenic "-," "ODZ1," chrX~chrX 124318557 124097666 7 -- 1.94591 5 3 2 5 32 TCGA-SI-A71Q-01A-12R-A33J-07 NchrX~124319492~ODZ1 intergenic "-," "ODZ1," chrX~chrX 124319492 124097666 2 -- 0.693147 2 2 0 2 18 TCGA-SI-A71Q-01A-12R-A33J-07 PDE4DIP~THEG fusion "PDE4DIP," "THEG," chr1~chr19 144873877 362426 4 -- 1.386294 4 0 4 4 2 TCGA-SI-A71Q-01A-12R-A33J-07 PPHLN1~RP11-493L12.3 fusion "PPHLN1," "RP11-493L12.3," chr12~chr12 42729776 47632073 11 +- 2.271869 11 5 6 11 18 TCGA-SI-A71Q-01A-12R-A33J-07 ROCK1~Nchr18~23411361 intergenic "ROCK1," "-," chr18~chr18 18690779 23411361 21 -+ 2.623522 20 12 8 20 32 TCGA-SI-A71Q-01A-12R-A33J-07 ROCK1~Nchr18~23496639 intergenic "ROCK1," "-," chr18~chr18 18690779 23496639 5 -+ 1.05492 3 0 3 3 4 TCGA-SI-A71Q-01A-12R-A33J-07 RP1-45C12.1~Nchr1~170776745 intergenic "RP1-45C12.1," "-," chr1~chr1 171137243 170776745 4 -- 1.039721 3 1 2 3 14 TCGA-SI-A71Q-01A-12R-A33J-07 RP11-123O10.4~GRIP1 fusion "RP11-123O10.4," "GRIP1," chr12~chr12 67462830 66990707 9 -- 2.043192 5 0 5 5 24 TCGA-SI-A71Q-01A-12R-A33J-07 RP11-3J1.1~Nchr4~19049294 intergenic "RP11-3J1.1," "-," chr4~chr4 19335287 19049294 4 -- 1.386294 3 1 2 3 2 TCGA-SI-A71Q-01A-12R-A33J-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 5 ++ 1.609438 5 2 3 5 8 TCGA-SI-A71Q-01A-12R-A33J-07 RP5-1011O1.2~Nchr1~192208920 intergenic "RP5-1011O1.2," "-," chr1~chr1 192536277 192208920 13 -- 2.311423 10 8 2 10 8 TCGA-SI-A71Q-01A-12R-A33J-07 RPL19~Nchr5~177483052 intergenic "RPL19," "-," chr17~chr5 37360790 177483052 2 ++ 0.693147 1 1 0 1 8 TCGA-SI-A71Q-01A-12R-A33J-07 RPL30~PPHLN1 fusion "RPL30," "PPHLN1," chr8~chr12 99057575 42768665 34 -+ 2.458822 31 29 2 31 90 TCGA-SI-A71Q-01A-12R-A33J-07 RPL30~PPHLN1 fusion "RPL30," "PPHLN1," chr8~chr12 99057171 42768665 64 -+ 2.808514 61 37 24 61 276 TCGA-SI-A71Q-01A-12R-A33J-07 SCAF8~TIAM2 fusion "SCAF8," "TIAM2," chr6~chr6 155063152 155265250 2 ++ 0.693147 2 2 0 2 2 TCGA-SI-A71Q-01A-12R-A33J-07 SERPINB9~AMBRA1 fusion "SERPINB9," "AMBRA1," chr6~chr11 2903435 46529920 2 -- 0.693147 2 2 0 2 2 TCGA-SI-A71Q-01A-12R-A33J-07 SHC1~Nchr17~42306882 intergenic "SHC1," "-," chr1~chr17 154938544 42306882 3 ++ 0.636514 3 3 0 3 2 TCGA-SI-A71Q-01A-12R-A33J-07 TADA3~Nchr21~10759169 intergenic "TADA3," "-," chr3~chr21 9828690 10759169 2 -+ 0.693147 2 1 1 2 10 TCGA-SI-A71Q-01A-12R-A33J-07 VCAN~EDIL3 fusion "VCAN," "EDIL3," chr5~chr5 82789750 83259179 3 +- 1.098612 3 2 1 3 2 TCGA-SI-A71P-01A-12R-A33J-07 C15orf57~CBX3 fusion "C15orf57," "CBX3," chr15~chr7 40854971 26241389 3 -+ 1.098612 3 2 1 3 8 TCGA-SI-A71P-01A-12R-A33J-07 CDKN2A~MYH10 fusion "CDKN2A," "MYH10," chr9~chr17 21994138 8508300 7 -- 1.747868 6 4 2 6 4 TCGA-SI-A71P-01A-12R-A33J-07 CDKN2A~MYH10 fusion "CDKN2A," "MYH10," chr9~chr17 21974677 8508300 5 -- 1.332179 5 5 0 5 10 TCGA-SI-A71P-01A-12R-A33J-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 2 +- 0.693147 2 1 1 2 4 TCGA-SI-A71P-01A-12R-A33J-07 GAS6-AS1~Nchr13~103604169 intergenic "GAS6-AS1," "-," chr13~chr13 114541220 103604169 9 +- 2.043192 8 4 4 8 24 TCGA-SI-A71P-01A-12R-A33J-07 HLA-B~Nchr6~29902006 intergenic "HLA-B," "-," chr6~chr6 31323352 29902006 3 ++ 1.098612 2 2 0 2 98 TCGA-SI-A71P-01A-12R-A33J-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31236903 31322298 2 -- 0.693147 2 0 2 2 6 TCGA-SI-A71P-01A-12R-A33J-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 350 -- 2.378532 346 3 343 346 390 TCGA-SI-A71P-01A-12R-A33J-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489818 32552126 2 -- 0.693147 1 0 1 1 1192 TCGA-SI-A71P-01A-12R-A33J-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 1843 -- 2.709062 1534 765 138 1534 2 TCGA-SI-A71P-01A-12R-A33J-07 KCNE4~Nchr2~224271904 intergenic "KCNE4," "-," chr2~chr2 223925421 224271904 3 ++ 1.098612 3 2 1 3 2 TCGA-SI-A71P-01A-12R-A33J-07 MYH10~CDKN2A fusion "MYH10," "CDKN2A," chr17~chr9 8526220 21971207 307 -- 2.98319 279 222 56 279 292 TCGA-SI-A71P-01A-12R-A33J-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 23 -+ 2.381484 14 0 14 14 16 TCGA-SI-A71P-01A-12R-A33J-07 Nchr15~58538334~ALDH1A2 intergenic "-," "ALDH1A2," chr15~chr15 58538334 58306479 5 -- 1.332179 5 2 3 5 2 TCGA-SI-A71P-01A-12R-A33J-07 Nchr15~58623378~Nchr15~58399667 intergenic "-," "-," chr15~chr15 58623378 58399667 5 -- 1.332179 5 4 1 5 8 TCGA-SI-A71P-01A-12R-A33J-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 38 -+ 2.901308 35 22 13 35 170 TCGA-SI-A71P-01A-12R-A33J-07 Nchr1~192685469~Nchr1~192685560 intergenic "-," "-," chr1~chr1 192685469 192685560 3 -- 1.098612 3 3 0 3 2 TCGA-SI-A71P-01A-12R-A33J-07 Nchr22~38367677~Nchr22~38367501 intergenic "-," "-," chr22~chr22 38367677 38367501 2 ++ 0.693147 2 1 1 2 4 TCGA-SI-A71P-01A-12R-A33J-07 Nchr3~50314179~Nchr3~50314390 intergenic "-," "-," chr3~chr3 50314179 50314390 2 -- 0.693147 1 1 0 1 14 TCGA-SI-A71P-01A-12R-A33J-07 Nchr4~86157940~ARHGAP24 intergenic "-," "ARHGAP24," chr4~chr4 86157940 86491675 3 ++ 1.098612 3 3 0 3 2 TCGA-SI-A71P-01A-12R-A33J-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 5 ++ 1.05492 5 5 0 5 8 TCGA-SI-A71P-01A-12R-A33J-07 Nchr7~135665806~AC009784.3 intergenic "-," "AC009784.3," chr7~chr7 135665806 135926898 3 ++ 0.636514 3 2 1 3 2 TCGA-SI-A71P-01A-12R-A33J-07 Nchr7~140912504~Nchr7~141137408 intergenic "-," "-," chr7~chr7 140912504 141137408 17 ++ 2.67012 11 5 6 11 14 TCGA-SI-A71P-01A-12R-A33J-07 Nchr7~20454557~Nchr7~20454496 intergenic "-," "-," chr7~chr7 20454557 20454496 18 ++ 1.796494 17 1 16 17 4 TCGA-SI-A71P-01A-12R-A33J-07 Nchr9~22301706~RP11-399D6.2 intergenic "-," "RP11-399D6.2," chr9~chr9 22301706 22674442 4 ++ 1.386294 4 4 0 4 2 TCGA-SI-A71P-01A-12R-A33J-07 Nchr9~22467905~RP11-399D6.2 intergenic "-," "RP11-399D6.2," chr9~chr9 22467905 22674442 6 ++ 1.791759 4 3 1 4 4 TCGA-SI-A71P-01A-12R-A33J-07 Nchr9~22768402~RP11-399D6.2 intergenic "-," "RP11-399D6.2," chr9~chr9 22768402 22820737 2 ++ 0.693147 2 1 1 2 14 TCGA-SI-A71P-01A-12R-A33J-07 RP11-141M1.3~STARD13 fusion "RP11-141M1.3," "STARD13," chr13~chr13 34098375 33741759 5 -- 0.950271 5 4 1 5 18 TCGA-SI-A71P-01A-12R-A33J-07 SAMD5~SASH1 fusion "SAMD5," "SASH1," chr6~chr6 147830523 148711270 4 ++ 1.386294 3 2 1 3 8 TCGA-SI-A71O-01A-12R-A33J-07 AC010859.1~SDC2 fusion "AC010859.1," "SDC2," chr8~chr8 97657630 97605708 2 ++ 0.693147 2 2 0 2 2 TCGA-SI-A71O-01A-12R-A33J-07 ADAMTS14~Nchr17~25352285 intergenic "ADAMTS14," "-," chr10~chr17 72505062 25352285 4 +- 1.386294 4 0 4 4 4 TCGA-SI-A71O-01A-12R-A33J-07 AGBL1~Nchr15~87572056 intergenic "AGBL1," "-," chr15~chr15 87217667 87572056 3 ++ 1.098612 2 1 1 2 2 TCGA-SI-A71O-01A-12R-A33J-07 ATRN~Nchr20~9484605 intergenic "ATRN," "-," chr20~chr20 3452164 9484605 7 ++ 1.94591 7 2 5 7 4 TCGA-SI-A71O-01A-12R-A33J-07 C10orf112~PLXDC2 fusion "C10orf112," "PLXDC2," chr10~chr10 20079115 20290704 7 ++ 1.747868 3 2 1 3 2 TCGA-SI-A71O-01A-12R-A33J-07 C1orf196~KAZN fusion "C1orf196," "KAZN," chr1~chr1 14507087 14925479 27 ++ 2.640947 26 16 10 26 46 TCGA-SI-A71O-01A-12R-A33J-07 C1orf196~Nchr1~14823164 intergenic "C1orf196," "-," chr1~chr1 14507087 14823164 5 ++ 1.332179 4 0 4 4 6 TCGA-SI-A71O-01A-12R-A33J-07 CDHR3~Nchr7~88285750 intergenic "CDHR3," "-," chr7~chr7 105517703 88285750 2 +- 0.693147 2 1 1 2 8 TCGA-SI-A71O-01A-12R-A33J-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264376 94038082 3 -+ 1.098612 2 2 0 2 2 TCGA-SI-A71O-01A-12R-A33J-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264853 94038119 4 -+ 1.039721 2 2 0 2 2 TCGA-SI-A71O-01A-12R-A33J-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48269871 94043553 3 -+ 0.636514 3 2 1 3 4 TCGA-SI-A71O-01A-12R-A33J-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273675 94047856 7 -+ 0.9557 6 5 1 6 4 TCGA-SI-A71O-01A-12R-A33J-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265953 189855767 2 -+ 0.693147 1 1 0 1 10 TCGA-SI-A71O-01A-12R-A33J-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268836 189862999 8 -+ 1.732868 6 3 3 6 16 TCGA-SI-A71O-01A-12R-A33J-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268842 189863008 7 -+ 0.796312 7 5 2 7 16 TCGA-SI-A71O-01A-12R-A33J-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272593 189864568 6 -+ 1.56071 5 5 0 5 10 TCGA-SI-A71O-01A-12R-A33J-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272828 189870095 3 -+ 1.098612 2 0 2 2 2 TCGA-SI-A71O-01A-12R-A33J-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049717 48266567 3 +- 1.098612 2 1 1 2 6 TCGA-SI-A71O-01A-12R-A33J-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48266636 4 +- 1.386294 2 1 1 2 10 TCGA-SI-A71O-01A-12R-A33J-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94052430 48270175 10 +- 1.886697 3 2 1 3 22 TCGA-SI-A71O-01A-12R-A33J-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94053755 48273007 2 +- 0.693147 2 1 1 2 2 TCGA-SI-A71O-01A-12R-A33J-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189867077 48266156 26 +- 1.737983 2 2 0 2 8 TCGA-SI-A71O-01A-12R-A33J-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870985 48271544 4 +- 1.039721 3 2 1 3 2 TCGA-SI-A71O-01A-12R-A33J-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189857666 48273026 5 +- 1.332179 1 1 0 1 4 TCGA-SI-A71O-01A-12R-A33J-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189868157 48275865 2 +- 0.693147 2 1 1 2 4 TCGA-SI-A71O-01A-12R-A33J-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189866315 94049703 2 ++ 0.693147 2 1 1 2 2 TCGA-SI-A71O-01A-12R-A33J-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189867045 94055069 11 ++ 0.916465 10 9 1 10 2 TCGA-SI-A71O-01A-12R-A33J-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189859058 94055762 2 ++ 0.693147 2 1 1 2 2 TCGA-SI-A71O-01A-12R-A33J-07 COLEC12~Nchr18~292594 intergenic "COLEC12," "-," chr18~chr18 480707 292594 17 -+ 1.925408 16 16 0 16 14 TCGA-SI-A71O-01A-12R-A33J-07 DHX35~Nchr20~38467911 intergenic "DHX35," "-," chr20~chr20 37601294 38467911 4 +- 1.386294 3 0 3 3 14 TCGA-SI-A71O-01A-12R-A33J-07 GRIN2A~MTHFD1L fusion "GRIN2A," "MTHFD1L," chr16~chr6 10031816 151413603 4 -+ 1.386294 4 4 0 4 6 TCGA-SI-A71O-01A-12R-A33J-07 GSK3B~Nchr3~103582307 intergenic "GSK3B," "-," chr3~chr3 119812194 103582307 9 -+ 2.043192 9 4 5 9 20 TCGA-SI-A71O-01A-12R-A33J-07 GSK3B~Nchr3~103592723 intergenic "GSK3B," "-," chr3~chr3 119812194 103592723 11 -+ 2.271869 11 7 4 11 36 TCGA-SI-A71O-01A-12R-A33J-07 GSK3B~Nchr3~103595258 intergenic "GSK3B," "-," chr3~chr3 119812194 103595258 4 -+ 1.039721 4 0 4 4 14 TCGA-SI-A71O-01A-12R-A33J-07 HERC3~Nchr8~115793189 intergenic "HERC3," "-," chr4~chr8 89591403 115793189 2 ++ 0.693147 2 1 1 2 6 TCGA-SI-A71O-01A-12R-A33J-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 71 -- 2.482192 71 71 0 71 38 TCGA-SI-A71O-01A-12R-A33J-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489818 32552111 2 -- 0.693147 1 0 1 1 44 TCGA-SI-A71O-01A-12R-A33J-07 KDM2A~Nchr22~32662339 intergenic "KDM2A," "-," chr11~chr22 66948869 32662339 12 +- 2.253858 11 6 5 11 30 TCGA-SI-A71O-01A-12R-A33J-07 KDM2A~Nchr22~32662339 intergenic "KDM2A," "-," chr11~chr22 66947688 32662339 5 +- 1.609438 4 1 3 4 14 TCGA-SI-A71O-01A-12R-A33J-07 KDM2A~SLC5A4 fusion "KDM2A," "SLC5A4," chr11~chr22 66947688 32650200 3 +- 0.636514 3 2 1 3 4 TCGA-SI-A71O-01A-12R-A33J-07 MDFIC~ZNF277 fusion "MDFIC," "ZNF277," chr7~chr7 114619836 111926928 3 ++ 1.098612 3 1 2 3 2 TCGA-SI-A71O-01A-12R-A33J-07 MRPS23~FAM117A fusion "MRPS23," "FAM117A," chr17~chr17 55926601 47799956 3 -- 1.098612 3 3 0 3 8 TCGA-SI-A71O-01A-12R-A33J-07 MRPS23~FAM117A fusion "MRPS23," "FAM117A," chr17~chr17 55926601 47810082 35 -- 2.795569 34 14 20 34 34 TCGA-SI-A71O-01A-12R-A33J-07 MYST2~F10 fusion "MYST2," "F10," chr17~chr13 47875920 113792380 3 ++ 0.636514 3 2 1 3 2 TCGA-SI-A71O-01A-12R-A33J-07 MYST2~F10 fusion "MYST2," "F10," chr17~chr13 47875920 113792771 10 ++ 2.025326 9 8 1 9 40 TCGA-SI-A71O-01A-12R-A33J-07 NT5DC1~Nchr6~113608909 intergenic "NT5DC1," "-," chr6~chr6 116439108 113608909 4 +- 1.039721 4 2 2 4 10 TCGA-SI-A71O-01A-12R-A33J-07 NTM~CTNNA2 fusion "NTM," "CTNNA2," chr11~chr2 132082041 80085139 10 ++ 2.025326 8 5 3 8 30 TCGA-SI-A71O-01A-12R-A33J-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 21 -+ 2.309633 11 0 11 11 8 TCGA-SI-A71O-01A-12R-A33J-07 Nchr14~106772476~Nchr14~106488489 intergenic "-," "-," chr14~chr14 106772476 106488489 8 ++ 1.732868 7 4 3 7 8 TCGA-SI-A71O-01A-12R-A33J-07 Nchr14~58448631~SLC35F4 intergenic "-," "SLC35F4," chr14~chr14 58448631 58060842 16 -- 2.339372 15 3 12 15 18 TCGA-SI-A71O-01A-12R-A33J-07 Nchr14~83614695~Nchr14~87772459 intergenic "-," "-," chr14~chr14 83614695 87772459 3 ++ 1.098612 1 1 0 1 2 TCGA-SI-A71O-01A-12R-A33J-07 Nchr14~83658886~Nchr14~87568380 intergenic "-," "-," chr14~chr14 83658886 87568380 2 ++ 0.693147 2 2 0 2 8 TCGA-SI-A71O-01A-12R-A33J-07 Nchr14~87704569~Nchr14~87500039 intergenic "-," "-," chr14~chr14 87704569 87500039 2 -- 0.693147 2 0 2 2 2 TCGA-SI-A71O-01A-12R-A33J-07 Nchr18~37331293~Nchr18~37115579 intergenic "-," "-," chr18~chr18 37331293 37115579 6 -- 1.56071 4 3 1 4 10 TCGA-SI-A71O-01A-12R-A33J-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 32 -+ 2.842881 30 15 15 30 308 TCGA-SI-A71O-01A-12R-A33J-07 Nchr20~38442228~Nchr20~22885129 intergenic "-," "-," chr20~chr20 38442228 22885129 5 ++ 1.609438 5 4 1 5 6 TCGA-SI-A71O-01A-12R-A33J-07 Nchr2~81775871~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81775871 82075877 13 ++ 2.351673 9 4 5 9 8 TCGA-SI-A71O-01A-12R-A33J-07 Nchr3~18105864~Nchr3~18351731 intergenic "-," "-," chr3~chr3 18105864 18351731 11 ++ 2.271869 11 2 9 11 24 TCGA-SI-A71O-01A-12R-A33J-07 Nchr3~18106818~Nchr3~18383739 intergenic "-," "-," chr3~chr3 18106818 18383739 5 ++ 1.332179 5 3 2 5 6 TCGA-SI-A71O-01A-12R-A33J-07 Nchr3~75264616~Nchr3~75264461 intergenic "-," "-," chr3~chr3 75264616 75264461 2 ++ 0.693147 2 0 2 2 2 TCGA-SI-A71O-01A-12R-A33J-07 Nchr5~93018536~NPM1 intergenic "-," "NPM1," chr5~chr5 93018536 170837597 2 -- 0.693147 2 2 0 2 6 TCGA-SI-A71O-01A-12R-A33J-07 Nchr9~1718912~Nchr9~1962121 intergenic "-," "-," chr9~chr9 1718912 1962121 11 ++ 1.893788 5 1 4 5 4 TCGA-SI-A71O-01A-12R-A33J-07 Nchr9~747407~Nchr9~1184131 intergenic "-," "-," chr9~chr9 747407 1184131 6 -- 1.791759 6 2 4 6 22 TCGA-SI-A71O-01A-12R-A33J-07 PHF3~Nchr18~40921586 intergenic "PHF3," "-," chr6~chr18 64356700 40921586 2 +- 0.693147 2 1 1 2 2 TCGA-SI-A71O-01A-12R-A33J-07 PHF3~SYT4 fusion "PHF3," "SYT4," chr6~chr18 64356700 40854359 4 +- 1.386294 4 3 1 4 14 TCGA-SI-A71O-01A-12R-A33J-07 PIKFYVE~Nchr2~209842342 intergenic "PIKFYVE," "-," chr2~chr2 209153542 209842342 47 ++ 2.779407 46 35 11 46 110 TCGA-SI-A71O-01A-12R-A33J-07 PLIN2~Nchr14~82646061 intergenic "PLIN2," "-," chr9~chr14 19120878 82646061 13 -+ 1.991509 13 2 11 13 22 TCGA-SI-A71O-01A-12R-A33J-07 RALY~ATRN fusion "RALY," "ATRN," chr20~chr20 32619410 3515900 7 ++ 1.94591 6 6 0 6 12 TCGA-SI-A71O-01A-12R-A33J-07 RP1-34H18.1~NAV3 fusion "RP1-34H18.1," "NAV3," chr12~chr12 77966046 78334099 13 ++ 2.351673 12 1 11 12 46 TCGA-SI-A71O-01A-12R-A33J-07 RP11-418J17.1~Nchr1~103753628 intergenic "RP11-418J17.1,WARS2," "-," chr1~chr1 119683178 103753628 4 -- 1.039721 1 1 0 1 10 TCGA-SI-A71O-01A-12R-A33J-07 RP11-742B18.1~SPARCL1 fusion "RP11-742B18.1," "SPARCL1," chr4~chr4 88651515 88420737 16 -- 2.512659 16 11 5 16 30 TCGA-SI-A71O-01A-12R-A33J-07 RP11-962G15.1~Nchr8~36284582 intergenic "RP11-962G15.1," "-," chr8~chr8 36511554 36284582 3 -- 1.098612 2 0 2 2 4 TCGA-SI-A71O-01A-12R-A33J-07 RSRC1~Nchr3~145577738 intergenic "RSRC1," "-," chr3~chr3 158178792 145577738 4 ++ 1.386294 1 1 0 1 2 TCGA-SI-A71O-01A-12R-A33J-07 SDHC~F10 fusion "SDHC," "F10," chr1~chr13 161298287 113783766 6 ++ 1.329661 5 4 1 5 4 TCGA-SI-A71O-01A-12R-A33J-07 SNX14~Nchr12~43613701 intergenic "SYNCRIP,SNX14," "-," chr6~chr12 86275050 43613701 3 -- 1.098612 3 2 1 3 22 TCGA-SI-A71O-01A-12R-A33J-07 VIM~Nchr6~126923677 intergenic "VIM," "-," chr10~chr6 17277297 126923677 2 -- 0.693147 2 2 0 2 2 TCGA-SI-A71O-01A-12R-A33J-07 YLPM1~KHDRBS2 fusion "YLPM1," "KHDRBS2," chr14~chr6 75287840 62442669 4 +- 1.386294 2 1 1 2 6 TCGA-SI-A71O-01A-12R-A33J-07 ZMYM2~Nchr13~98440888 intergenic "ZMYM2," "-," chr13~chr13 20611049 98440888 2 +- 0.693147 2 2 0 2 2 TCGA-SI-A71O-01A-12R-A33J-07 ZMYM2~Nchr13~98444575 intergenic "ZMYM2," "-," chr13~chr13 20611049 98444575 8 +- 1.732868 5 2 3 5 2 TCGA-DX-A6YQ-01A-12R-A33J-07 ATG7~Nchr7~148357460 intergenic "ATG7," "-," chr3~chr7 11468400 148357460 3 +- 1.098612 3 0 3 3 4 TCGA-DX-A6YQ-01A-12R-A33J-07 C17orf65~Nchr9~130352452 intergenic "C17orf65," "-," chr17~chr9 42263933 130352452 2 -- 0.693147 2 1 1 2 12 TCGA-DX-A6YQ-01A-12R-A33J-07 CALR3~ABHD8 fusion "CALR3,MED26," "ABHD8," chr19~chr19 16738683 17412433 5 -- 1.332179 4 1 3 4 4 TCGA-DX-A6YQ-01A-12R-A33J-07 DDA1~Nchr19~16740170 intergenic "DDA1," "-," chr19~chr19 17425198 16740170 3 ++ 1.098612 3 2 1 3 2 TCGA-DX-A6YQ-01A-12R-A33J-07 DDA1~TMEM38A fusion "DDA1," "TMEM38A," chr19~chr19 17425198 16790795 3 ++ 1.098612 3 1 2 3 4 TCGA-DX-A6YQ-01A-12R-A33J-07 DUSP8~Nchr11~2369026 intergenic "DUSP8," "-," chr11~chr11 1585081 2369026 7 -- 1.747868 7 2 5 7 10 TCGA-DX-A6YQ-01A-12R-A33J-07 FBLN7~ALOXE3 fusion "FBLN7," "ALOXE3," chr2~chr17 112942916 8012572 3 +- 1.098612 3 1 2 3 6 TCGA-DX-A6YQ-01A-12R-A33J-07 HEATR2~LAMA5 fusion "HEATR2," "LAMA5," chr7~chr20 769484 60886150 14 +- 2.106577 14 10 4 14 38 TCGA-DX-A6YQ-01A-12R-A33J-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31237115 31322073 3 -- 1.098612 1 1 0 1 284 TCGA-DX-A6YQ-01A-12R-A33J-07 KCTD17~Nchr22~37459637 intergenic "KCTD17," "-," chr22~chr22 37458076 37459637 4 +- 1.386294 3 0 3 3 4 TCGA-DX-A6YQ-01A-12R-A33J-07 MYO9B~CPAMD8 fusion "MYO9B," "CPAMD8," chr19~chr19 17316961 17091496 7 +- 1.94591 7 5 2 7 6 TCGA-DX-A6YQ-01A-12R-A33J-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 116 -+ 2.485263 65 0 65 65 50 TCGA-DX-A6YQ-01A-12R-A33J-07 Nchr14~46681007~Nchr14~46940565 intergenic "-," "-," chr14~chr14 46681007 46940565 3 ++ 1.098612 3 1 2 3 12 TCGA-DX-A6YQ-01A-12R-A33J-07 Nchr14~46681007~Nchr14~46970510 intergenic "-," "-," chr14~chr14 46681007 46970510 4 ++ 1.386294 3 3 0 3 6 TCGA-DX-A6YQ-01A-12R-A33J-07 Nchr16~65605674~Nchr16~65397711 intergenic "-," "-," chr16~chr16 65605674 65397711 2 -- 0.693147 2 1 1 2 2 TCGA-DX-A6YQ-01A-12R-A33J-07 Nchr16~69790871~Nchr16~69790950 intergenic "-," "-," chr16~chr16 69790871 69790950 4 -- 1.039721 4 0 4 4 2 TCGA-DX-A6YQ-01A-12R-A33J-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151282 5 -- 1.332179 4 2 2 4 30 TCGA-DX-A6YQ-01A-12R-A33J-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 9 -- 2.043192 8 2 6 8 30 TCGA-DX-A6YQ-01A-12R-A33J-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 25 -+ 2.456143 24 10 14 24 166 TCGA-DX-A6YQ-01A-12R-A33J-07 Nchr1~173431463~TNFSF4 intergenic "-," "TNFSF4," chr1~chr1 173431463 173176324 2 -- 0.693147 1 0 1 1 4 TCGA-DX-A6YQ-01A-12R-A33J-07 Nchr1~176234254~PAPPA2 intergenic "-," "PAPPA2," chr1~chr1 176234254 176524543 5 ++ 1.332179 5 2 3 5 18 TCGA-DX-A6YQ-01A-12R-A33J-07 Nchr1~176317611~PAPPA2 intergenic "-," "PAPPA2," chr1~chr1 176317611 176524543 6 ++ 1.56071 3 0 3 3 2 TCGA-DX-A6YQ-01A-12R-A33J-07 Nchr4~138228524~RP11-138I17.1 intergenic "-," "RP11-138I17.1," chr4~chr4 138228524 138010754 7 -- 1.475076 3 0 3 3 12 TCGA-DX-A6YQ-01A-12R-A33J-07 Nchr4~138231302~RP11-138I17.1 intergenic "-," "RP11-138I17.1," chr4~chr4 138231302 138010754 6 -- 1.242453 2 2 0 2 2 TCGA-DX-A6YQ-01A-12R-A33J-07 Nchr6~141219325~Nchr6~140972698 intergenic "-," "-," chr6~chr6 141219325 140972698 4 -- 1.039721 2 2 0 2 4 TCGA-DX-A6YQ-01A-12R-A33J-07 Nchr6~29901974~HLA-C intergenic "-," "HLA-C," chr6~chr6 29901974 31239083 4 -- 1.386294 2 0 2 2 2 TCGA-DX-A6YQ-01A-12R-A33J-07 Nchr7~122851497~Nchr7~123096679 intergenic "-," "-," chr7~chr7 122851497 123096679 2 ++ 0.693147 2 1 1 2 10 TCGA-DX-A6YQ-01A-12R-A33J-07 Nchr9~29212088~Nchr9~28947912 intergenic "-," "-," chr9~chr9 29212088 28947912 5 -- 1.332179 3 2 1 3 2 TCGA-DX-A6YQ-01A-12R-A33J-07 NchrX~45212957~NchrX~45461542 intergenic "-," "-," chrX~chrX 45212957 45461542 6 ++ 1.56071 6 2 4 6 24 TCGA-DX-A6YQ-01A-12R-A33J-07 RGS17~PDLIM5 fusion "RGS17," "PDLIM5," chr6~chr4 153365035 95583573 15 -+ 2.303488 14 4 10 14 66 TCGA-DX-A6YQ-01A-12R-A33J-07 RP1-34H18.1~NAV3 fusion "RP1-34H18.1," "NAV3," chr12~chr12 77966046 78334099 3 ++ 1.098612 2 1 1 2 2 TCGA-DX-A6YQ-01A-12R-A33J-07 RP11-634B7.4~TRIM58 fusion "RP11-634B7.4,RP11-978I15.10," "TRIM58," chr1~chr1 247803731 248023919 4 ++ 1.386294 4 3 1 4 4 TCGA-DX-A6YQ-01A-12R-A33J-07 SIL1~NchrX~29188444 intergenic "CTB-46B19.2,SIL1," "-," chr5~chrX 138356860 29188444 2 -- 0.693147 2 1 1 2 12 TCGA-DX-A6YQ-01A-12R-A33J-07 TFRC~RP11-754N21.1 fusion "TFRC," "RP11-754N21.1," chr3~chr12 195791180 78816191 3 -+ 1.098612 3 2 1 3 52 TCGA-DX-A6YQ-01A-12R-A33J-07 TFRC~RP11-754N21.1 fusion "TFRC," "RP11-754N21.1," chr3~chr12 195791180 78816972 25 -+ 2.587976 20 6 14 20 48 TCGA-DX-A6YQ-01A-12R-A33J-07 TFRC~RP11-754N21.1 fusion "TFRC," "RP11-754N21.1," chr3~chr12 195791180 78869468 33 -+ 2.538702 32 10 19 32 126 TCGA-DX-A6YQ-01A-12R-A33J-07 TFRC~RP11-754N21.1 fusion "TFRC," "RP11-754N21.1," chr3~chr12 195791180 78871173 68 -+ 2.839356 66 39 27 66 156 TCGA-DX-A6YQ-01A-12R-A33J-07 TP53~Nchr17~43541107 intergenic "TP53," "-," chr17~chr17 7576853 43541107 3 -+ 1.098612 3 1 2 3 34 TCGA-DX-A6YQ-01A-12R-A33J-07 WARS~Nchr11~59025291 intergenic "WARS," "-," chr14~chr11 100808779 59025291 2 ++ 0.693147 2 0 2 2 2 TCGA-DX-A6YU-01A-12R-A33J-07 AC011497.1~Nchr19~43155239 intergenic "AC011497.1," "-," chr19~chr19 42929356 43155239 3 ++ 1.098612 3 1 2 3 6 TCGA-DX-A6YU-01A-12R-A33J-07 AKAP7~Nchr8~129750228 intergenic "AKAP7," "-," chr6~chr8 131540948 129750228 2 ++ 0.693147 2 2 0 2 2 TCGA-DX-A6YU-01A-12R-A33J-07 ATRX~NchrX~119159174 intergenic "ATRX," "-," chrX~chrX 76907604 119159174 9 -+ 2.197225 8 5 3 8 24 TCGA-DX-A6YU-01A-12R-A33J-07 ATRX~NchrX~119159177 intergenic "ATRX," "-," chrX~chrX 76907604 119159177 3 -+ 1.098612 3 1 2 3 12 TCGA-DX-A6YU-01A-12R-A33J-07 BACH1-IT1~BACH1 fusion "BACH1-IT1," "NCRNA00258,BACH1," chr21~chr21 30724134 30969890 2 ++ 0.693147 2 2 0 2 2 TCGA-DX-A6YU-01A-12R-A33J-07 CPSF4~RP11-762I7.5 fusion "CPSF4," "RP11-762I7.5,SARNP," chr7~chr12 99040711 56184376 2 +- 0.693147 2 0 2 2 10 TCGA-DX-A6YU-01A-12R-A33J-07 DCTN1~Nchr2~190853 intergenic "DCTN1," "-," chr2~chr2 74618921 190853 7 -- 1.351784 6 6 0 6 10 TCGA-DX-A6YU-01A-12R-A33J-07 HLA-B~Nchr6~29902006 intergenic "HLA-B," "-," chr6~chr6 31323352 29902006 3 ++ 1.098612 2 2 0 2 410 TCGA-DX-A6YU-01A-12R-A33J-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31236564 31321721 3 -- 1.098612 2 2 0 2 4 TCGA-DX-A6YU-01A-12R-A33J-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31237270 31322303 19 -- 2.159732 7 1 6 7 36 TCGA-DX-A6YU-01A-12R-A33J-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 934 -- 2.45023 934 932 2 934 462 TCGA-DX-A6YU-01A-12R-A33J-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 377 -- 2.115723 380 3 372 380 158 TCGA-DX-A6YU-01A-12R-A33J-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 930 -- 2.662716 710 293 79 710 4 TCGA-DX-A6YU-01A-12R-A33J-07 HLA-G~Nchr6~29895218 intergenic "HLA-G," "-," chr6~chr6 29796516 29895218 2 -- 0.693147 1 0 1 1 32 TCGA-DX-A6YU-01A-12R-A33J-07 IPO8~FAR2 fusion "IPO8," "FAR2," chr12~chr12 30802071 29349477 2 -+ 0.693147 2 1 1 2 8 TCGA-DX-A6YU-01A-12R-A33J-07 ITM2B~RB1 fusion "ITM2B," "RB1," chr13~chr13 48807613 49051491 127 ++ 2.987103 121 15 105 121 278 TCGA-DX-A6YU-01A-12R-A33J-07 MAN2A1~HTR4 fusion "MAN2A1," "HTR4," chr5~chr5 109125228 147830835 8 +- 1.906155 7 3 4 7 28 TCGA-DX-A6YU-01A-12R-A33J-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 17 -+ 1.956187 9 0 9 9 8 TCGA-DX-A6YU-01A-12R-A33J-07 Nchr18~37331293~Nchr18~37115579 intergenic "-," "-," chr18~chr18 37331293 37115579 3 -- 1.098612 3 2 1 3 6 TCGA-DX-A6YU-01A-12R-A33J-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 51 -+ 3.090884 47 25 22 47 216 TCGA-DX-A6YU-01A-12R-A33J-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145013721 4 -+ 1.039721 4 2 2 4 40 TCGA-DX-A6YU-01A-12R-A33J-07 Nchr1~173431463~TNFSF4 intergenic "-," "TNFSF4," chr1~chr1 173431463 173157708 2 -- 0.693147 2 1 1 2 2 TCGA-DX-A6YU-01A-12R-A33J-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 4 ++ 1.039721 3 2 1 3 10 TCGA-DX-A6YU-01A-12R-A33J-07 Nchr21~17603435~Nchr21~17979314 intergenic "-," "-," chr21~chr21 17603435 17979314 4 ++ 0.562335 3 0 3 3 12 TCGA-DX-A6YU-01A-12R-A33J-07 Nchr2~139258325~Nchr2~139057107 intergenic "-," "-," chr2~chr2 139258325 139057107 2 -- 0.693147 2 0 2 2 2 TCGA-DX-A6YU-01A-12R-A33J-07 Nchr5~93018536~NPM1 intergenic "-," "NPM1," chr5~chr5 93018536 170837597 2 -- 0.693147 2 1 1 2 38 TCGA-DX-A6YU-01A-12R-A33J-07 Nchr6~141219325~Nchr6~140972698 intergenic "-," "-," chr6~chr6 141219325 140972698 6 -- 1.56071 3 3 0 3 14 TCGA-DX-A6YU-01A-12R-A33J-07 NchrX~45212957~NchrX~45461542 intergenic "-," "-," chrX~chrX 45212957 45461542 2 ++ 0.693147 2 0 2 2 6 TCGA-DX-A6YU-01A-12R-A33J-07 NchrX~73500229~NchrX~73289419 intergenic "-," "-," chrX~chrX 73500229 73289419 2 -- 0.693147 1 1 0 1 4 TCGA-DX-A6YU-01A-12R-A33J-07 PAM~Nchr5~17650295 intergenic "PAM," "-," chr5~chr5 102326105 17650295 2 +- 0.693147 2 2 0 2 6 TCGA-DX-A6YU-01A-12R-A33J-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 2 ++ 0.693147 2 1 1 2 8 TCGA-DX-A6YU-01A-12R-A33J-07 TBCK~Nchr1~2878665 intergenic "TBCK," "-," chr4~chr1 107216251 2878665 9 -- 2.043192 8 5 3 8 8 TCGA-SG-A6Z4-01A-22R-A33J-07 C1orf196~KAZN fusion "C1orf196," "KAZN," chr1~chr1 14507087 14925479 13 ++ 2.031759 9 5 4 9 24 TCGA-SG-A6Z4-01A-22R-A33J-07 CCDC36~NR3C2 fusion "CCDC36," "NR3C2," chr3~chr4 49237006 149116013 3 +- 1.098612 2 0 2 2 4 TCGA-SG-A6Z4-01A-22R-A33J-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271491 94029544 5 -+ 1.332179 2 2 0 2 12 TCGA-SG-A6Z4-01A-22R-A33J-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266609 94034015 2 -+ 0.693147 2 1 1 2 18 TCGA-SG-A6Z4-01A-22R-A33J-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273296 94045741 5 -+ 0.950271 4 4 0 4 30 TCGA-SG-A6Z4-01A-22R-A33J-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272090 94053739 5 -+ 1.332179 4 0 4 4 18 TCGA-SG-A6Z4-01A-22R-A33J-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272593 94054429 10 -+ 0.325083 8 8 0 8 14 TCGA-SG-A6Z4-01A-22R-A33J-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266546 94055790 2 -+ 0.693147 2 2 0 2 20 TCGA-SG-A6Z4-01A-22R-A33J-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272936 189861215 3 -+ 1.098612 1 0 1 1 2 TCGA-SG-A6Z4-01A-22R-A33J-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268840 189862992 10 -+ 1.220607 9 6 3 9 2 TCGA-SG-A6Z4-01A-22R-A33J-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48267220 189866123 2 -+ 0.693147 2 1 1 2 22 TCGA-SG-A6Z4-01A-22R-A33J-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265237 189868137 3 -+ 1.098612 1 0 1 1 2 TCGA-SG-A6Z4-01A-22R-A33J-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268178 189871071 2 -+ 0.693147 2 2 0 2 4 TCGA-SG-A6Z4-01A-22R-A33J-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94050374 48264483 2 +- 0.693147 2 1 1 2 42 TCGA-SG-A6Z4-01A-22R-A33J-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047864 48266156 3 +- 1.098612 1 0 1 1 14 TCGA-SG-A6Z4-01A-22R-A33J-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94053738 48266608 2 +- 0.693147 2 1 1 2 42 TCGA-SG-A6Z4-01A-22R-A33J-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94052323 48266844 2 +- 0.693147 2 1 1 2 102 TCGA-SG-A6Z4-01A-22R-A33J-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94041994 48271402 3 +- 1.098612 2 1 1 2 12 TCGA-SG-A6Z4-01A-22R-A33J-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94045815 48272461 2 +- 0.693147 2 1 1 2 6 TCGA-SG-A6Z4-01A-22R-A33J-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189868816 48268266 2 +- 0.693147 1 0 1 1 8 TCGA-SG-A6Z4-01A-22R-A33J-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189863444 48273026 5 +- 1.332179 4 1 3 4 8 TCGA-SG-A6Z4-01A-22R-A33J-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189867033 48274424 13 +- 1.043794 11 2 9 11 14 TCGA-SG-A6Z4-01A-22R-A33J-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31237743 31322442 15 -- 2.118649 6 0 6 6 2 TCGA-SG-A6Z4-01A-22R-A33J-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 383 -- 2.170222 383 382 1 383 148 TCGA-SG-A6Z4-01A-22R-A33J-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 67 -- 2.110692 69 0 67 69 46 TCGA-SG-A6Z4-01A-22R-A33J-07 KIAA1370~CCDC102B fusion "KIAA1370," "CCDC102B," chr15~chr18 52885775 66721267 7 -+ 1.549826 4 3 1 4 6 TCGA-SG-A6Z4-01A-22R-A33J-07 KLHL26~GATAD2A fusion "KLHL26," "GATAD2A," chr19~chr19 18747947 19603115 7 ++ 1.747868 7 2 5 7 2 TCGA-SG-A6Z4-01A-22R-A33J-07 LSAMP~CCDC58 fusion "LSAMP,RP11-384F7.2," "CCDC58," chr3~chr3 117716029 122081874 7 -- 1.747868 7 6 1 7 20 TCGA-SG-A6Z4-01A-22R-A33J-07 LSAMP~Nchr3~116018482 intergenic "LSAMP," "-," chr3~chr3 115726132 116018482 2 ++ 0.693147 2 0 2 2 2 TCGA-SG-A6Z4-01A-22R-A33J-07 MYH8~Nchr17~10511671 intergenic "MYH8," "-," chr17~chr17 10309555 10511671 3 ++ 1.098612 1 0 1 1 2 TCGA-SG-A6Z4-01A-22R-A33J-07 NDFIP2~Nchr13~82088507 intergenic "NDFIP2," "-," chr13~chr13 80055659 82088507 3 ++ 0.636514 3 0 3 3 4 TCGA-SG-A6Z4-01A-22R-A33J-07 Nchr11~67450374~RPL37 intergenic "-," "RPL37," chr11~chr5 67450374 40834585 3 -- 1.098612 1 0 1 1 26 TCGA-SG-A6Z4-01A-22R-A33J-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 63 -+ 2.571683 29 0 28 29 22 TCGA-SG-A6Z4-01A-22R-A33J-07 Nchr14~106772476~Nchr14~106488489 intergenic "-," "-," chr14~chr14 106772476 106488489 5 ++ 1.609438 3 3 0 3 10 TCGA-SG-A6Z4-01A-22R-A33J-07 Nchr14~58448631~SLC35F4 intergenic "-," "SLC35F4," chr14~chr14 58448631 58060842 7 -- 1.94591 7 4 3 7 2 TCGA-SG-A6Z4-01A-22R-A33J-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 6 ++ 1.56071 6 2 4 6 28 TCGA-SG-A6Z4-01A-22R-A33J-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 12 ++ 1.979205 12 4 8 12 12 TCGA-SG-A6Z4-01A-22R-A33J-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 108 -+ 3.129891 98 61 36 98 224 TCGA-SG-A6Z4-01A-22R-A33J-07 Nchr20~29653686~Nchr9~68422207 intergenic "-," "-," chr20~chr9 29653686 68422207 3 +- 1.098612 1 1 0 1 2 TCGA-SG-A6Z4-01A-22R-A33J-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 3 ++ 1.098612 2 2 0 2 2 TCGA-SG-A6Z4-01A-22R-A33J-07 Nchr3~115510005~LSAMP intergenic "-," "LSAMP," chr3~chr3 115510005 115725983 10 ++ 1.834372 9 8 1 9 16 TCGA-SG-A6Z4-01A-22R-A33J-07 Nchr3~115510005~LSAMP intergenic "-," "LSAMP," chr3~chr3 115510005 115786776 4 ++ 1.386294 3 1 2 3 4 TCGA-SG-A6Z4-01A-22R-A33J-07 Nchr3~52273451~FAM59A intergenic "-," "FAM59A," chr3~chr18 52273451 29890286 2 +- 0.693147 1 0 1 1 4 TCGA-SG-A6Z4-01A-22R-A33J-07 Nchr4~24473998~Nchr4~24093258 intergenic "-," "-," chr4~chr4 24473998 24093258 2 -- 0.693147 2 0 2 2 4 TCGA-SG-A6Z4-01A-22R-A33J-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 3 -- 1.098612 3 3 0 3 2 TCGA-SG-A6Z4-01A-22R-A33J-07 Nchr6~141219325~Nchr6~140972698 intergenic "-," "-," chr6~chr6 141219325 140972698 14 -- 1.965237 7 2 5 7 12 TCGA-SG-A6Z4-01A-22R-A33J-07 Nchr6~8558876~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8558876 8784424 3 ++ 1.098612 2 0 2 2 2 TCGA-SG-A6Z4-01A-22R-A33J-07 NchrX~64295792~NchrX~64586518 intergenic "-," "-," chrX~chrX 64295792 64586518 2 ++ 0.693147 2 1 1 2 6 TCGA-SG-A6Z4-01A-22R-A33J-07 PGM2L1~Nchr11~79561504 intergenic "PGM2L1," "-," chr11~chr11 74079537 79561504 18 -+ 2.370135 16 6 10 16 18 TCGA-SG-A6Z4-01A-22R-A33J-07 RASA1~CETN3 fusion "RASA1," "CETN3," chr5~chr5 86686746 89689924 25 +- 2.411514 24 4 20 24 54 TCGA-SG-A6Z4-01A-22R-A33J-07 RBM26~AC100793.1 fusion "RBM26," "AC100793.1," chr13~chr17 79908479 40912729 3 -- 1.098612 3 3 0 3 14 TCGA-SG-A6Z4-01A-22R-A33J-07 RP1-34H18.1~NAV3 fusion "RP1-34H18.1," "NAV3," chr12~chr12 77966046 78334099 6 ++ 1.242453 6 2 4 6 8 TCGA-SG-A6Z4-01A-22R-A33J-07 SERPINH1~COL1A1 fusion "SERPINH1," "COL1A1," chr11~chr17 75282846 48262224 2 +- 0.693147 2 1 1 2 2 TCGA-SG-A6Z4-01A-22R-A33J-07 SSBP4~Nchr18~12067469 intergenic "SSBP4," "-," chr19~chr18 18543693 12067469 3 ++ 1.098612 2 2 0 2 6 TCGA-SG-A6Z4-01A-22R-A33J-07 ZNF141~ZNF718 fusion "ZNF141," "ZNF718," chr4~chr4 338219 154702 4 ++ 0.693147 4 2 2 4 4 TCGA-SG-A6Z4-01A-22R-A33J-07 ZNF143~ACVR1 fusion "ZNF143," "ACVR1," chr11~chr2 9516312 158696844 5 +- 1.609438 3 2 1 3 2 TCGA-QC-A7B5-01A-11R-A33J-07 ATP2B4~MRPS21 fusion "ATP2B4," "MRPS21," chr1~chr1 203696699 150280482 4 ++ 1.386294 4 3 1 4 6 TCGA-QC-A7B5-01A-11R-A33J-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94054536 48266156 3 +- 0.636514 3 0 3 3 2 TCGA-QC-A7B5-01A-11R-A33J-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 2 +- 0.693147 2 2 0 2 12 TCGA-QC-A7B5-01A-11R-A33J-07 Nchr10~77530612~C10orf11 intergenic "-," "C10orf11," chr10~chr10 77530612 77795766 4 ++ 1.386294 4 0 4 4 6 TCGA-QC-A7B5-01A-11R-A33J-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 129 -+ 2.270768 52 0 52 52 84 TCGA-QC-A7B5-01A-11R-A33J-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 53 -+ 2.827461 50 23 27 50 360 TCGA-QC-A7B5-01A-11R-A33J-07 Nchr1~171639784~Nchr1~171639676 intergenic "-," "-," chr1~chr1 171639784 171639676 2 ++ 0.693147 1 1 0 1 4 TCGA-QC-A7B5-01A-11R-A33J-07 Nchr1~192685469~Nchr1~192685560 intergenic "-," "-," chr1~chr1 192685469 192685560 4 -- 1.039721 2 2 0 2 2 TCGA-QC-A7B5-01A-11R-A33J-07 Nchr2~177065788~Nchr2~177065931 intergenic "-," "-," chr2~chr2 177065788 177065931 3 -- 0.636514 3 0 3 3 22 TCGA-QC-A7B5-01A-11R-A33J-07 Nchr2~177065926~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065926 177065788 2 ++ 0.693147 2 0 2 2 18 TCGA-QC-A7B5-01A-11R-A33J-07 Nchr2~81709228~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81709228 82075877 2 ++ 0.693147 2 0 2 2 10 TCGA-QC-A7B5-01A-11R-A33J-07 Nchr2~81775871~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81775871 82075877 21 ++ 2.664619 18 9 9 18 40 TCGA-QC-A7B5-01A-11R-A33J-07 Nchr4~157255513~Nchr4~157354309 intergenic "-," "-," chr4~chr4 157255513 157354309 4 ++ 1.386294 4 1 3 4 8 TCGA-QC-A7B5-01A-11R-A33J-07 Nchr7~22893899~CAMK2B intergenic "-," "CAMK2B," chr7~chr7 22893899 44260500 183 +- 2.379195 162 5 157 162 34 TCGA-QC-A7B5-01A-11R-A33J-07 Nchr7~22894583~CAMK2B intergenic "-," "CAMK2B," chr7~chr7 22894583 44260500 256 +- 3.395964 254 114 126 254 268 TCGA-QC-A7B5-01A-11R-A33J-07 Nchr7~22894583~CAMK2B intergenic "-," "CAMK2B," chr7~chr7 22894583 44260713 4 +- 1.386294 3 1 2 3 2 TCGA-K1-A6RT-01A-32R-A33J-07 ACTA1~COL1A1 fusion "ACTA1," "COL1A1," chr1~chr17 229567334 48261761 2 -- 0.693147 2 1 1 2 2 TCGA-K1-A6RT-01A-32R-A33J-07 ARHGAP17~Nchr5~8916075 intergenic "ARHGAP17," "-," chr16~chr5 24960725 8916075 3 -- 1.098612 2 2 0 2 8 TCGA-K1-A6RT-01A-32R-A33J-07 ARHGAP17~Nchr5~8933690 intergenic "ARHGAP17," "-," chr16~chr5 24960725 8933690 4 -- 1.386294 4 2 2 4 4 TCGA-K1-A6RT-01A-32R-A33J-07 ARHGAP17~Nchr5~8934063 intergenic "ARHGAP17," "-," chr16~chr5 24960725 8934063 7 -- 1.747868 7 6 1 7 8 TCGA-K1-A6RT-01A-32R-A33J-07 BMPR1B~PDLIM5 fusion "BMPR1B," "PDLIM5," chr4~chr4 95917285 95444875 2 ++ 0.693147 2 1 1 2 2 TCGA-K1-A6RT-01A-32R-A33J-07 CACNA2D1~PTPN12 fusion "CACNA2D1," "PTPN12," chr7~chr7 81964451 77200395 2 -+ 0.693147 2 1 1 2 6 TCGA-K1-A6RT-01A-32R-A33J-07 CORO6~ACTG1 fusion "CORO6," "ACTG1," chr17~chr17 27944518 79478652 3 -- 1.098612 2 2 0 2 14 TCGA-K1-A6RT-01A-32R-A33J-07 CPSF4~RP11-762I7.5 fusion "CPSF4," "RP11-762I7.5,SARNP," chr7~chr12 99040711 56184376 2 +- 0.693147 2 2 0 2 12 TCGA-K1-A6RT-01A-32R-A33J-07 DOC2B~Nchr5~5921812 intergenic "DOC2B," "-," chr17~chr5 6011 5921812 12 -+ 2.138333 11 7 4 11 32 TCGA-K1-A6RT-01A-32R-A33J-07 DOC2B~Nchr5~5923307 intergenic "DOC2B," "-," chr17~chr5 6011 5923307 13 -+ 2.098147 13 7 6 13 24 TCGA-K1-A6RT-01A-32R-A33J-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 2 +- 0.693147 2 2 0 2 2 TCGA-K1-A6RT-01A-32R-A33J-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238180 31324034 2 -- 0.693147 2 2 0 2 20 TCGA-K1-A6RT-01A-32R-A33J-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32486396 32548633 2 -- 0.693147 2 0 2 2 54 TCGA-K1-A6RT-01A-32R-A33J-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 1131 -- 2.519299 946 356 585 946 416 TCGA-K1-A6RT-01A-32R-A33J-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489818 32552126 3 -- 0.636514 2 0 2 2 1920 TCGA-K1-A6RT-01A-32R-A33J-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489804 32552130 3 -- 1.098612 1 0 1 1 1890 TCGA-K1-A6RT-01A-32R-A33J-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32497902 32552155 86 -- 2.634564 18 8 10 18 92 TCGA-K1-A6RT-01A-32R-A33J-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 343 -- 2.585008 206 53 153 206 8 TCGA-K1-A6RT-01A-32R-A33J-07 HLA-F~Nchr6~29896049 intergenic "HLA-F," "-," chr6~chr6 29692935 29896049 3 -- 1.098612 1 1 0 1 4 TCGA-K1-A6RT-01A-32R-A33J-07 IGHJ6~IGHG2 fusion "IGHJ6," "IGHG2," chr14~chr14 106329408 106110286 4 -- 1.039721 4 4 0 4 4 TCGA-K1-A6RT-01A-32R-A33J-07 IGHM~Nchr14~106318544 intergenic "IGHM," "-," chr14~chr14 106320571 106318544 5 -+ 1.609438 3 2 1 3 40 TCGA-K1-A6RT-01A-32R-A33J-07 IGHV3-9~IGHG1 fusion "IGHV3-9," "IGHG1," chr14~chr14 106552684 106209407 3 -- 1.098612 2 1 1 2 6 TCGA-K1-A6RT-01A-32R-A33J-07 IGKV4-1~AC096579.7 fusion "IGKV4-1," "IGKC,AC096579.7," chr2~chr2 89185136 89157196 3 +- 1.098612 2 2 0 2 18 TCGA-K1-A6RT-01A-32R-A33J-07 KIAA0284~Nchr7~115362945 intergenic "KIAA0284," "-," chr14~chr7 105349557 115362945 15 +- 1.898927 14 14 0 14 10 TCGA-K1-A6RT-01A-32R-A33J-07 LSAMP~Nchr3~116018482 intergenic "LSAMP," "-," chr3~chr3 115726132 116018482 3 ++ 1.098612 3 1 2 3 2 TCGA-K1-A6RT-01A-32R-A33J-07 MYH1~MYH2 fusion "MYH1," "MYH2," chr17~chr17 10399840 10428620 4 -- 1.039721 4 4 0 4 8 TCGA-K1-A6RT-01A-32R-A33J-07 MYH6~MYH7 fusion "MYH6," "MYH7," chr14~chr14 23852437 23883311 11 -- 1.641735 11 1 10 11 24 TCGA-K1-A6RT-01A-32R-A33J-07 MYH6~MYH7 fusion "MYH6," "MYH7," chr14~chr14 23862972 23893263 5 -- 1.05492 5 5 0 5 30 TCGA-K1-A6RT-01A-32R-A33J-07 MYH6~MYH7 fusion "MYH6," "MYH7," chr14~chr14 23862908 23893283 3 -- 1.098612 3 2 1 3 40 TCGA-K1-A6RT-01A-32R-A33J-07 MYH6~MYH7 fusion "MYH6," "MYH7," chr14~chr14 23873505 23900690 271 -- 2.968012 249 148 101 249 26 TCGA-K1-A6RT-01A-32R-A33J-07 MYH7~MYH2 fusion "MYH7," "MYH2," chr14~chr17 23886877 10430012 7 -- 1.153742 6 4 2 6 12 TCGA-K1-A6RT-01A-32R-A33J-07 Nchr11~27603266~RPS25 intergenic "-," "RPS25," chr11~chr11 27603266 118888759 2 -- 0.693147 2 1 1 2 352 TCGA-K1-A6RT-01A-32R-A33J-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 31 -+ 2.118597 14 0 14 14 8 TCGA-K1-A6RT-01A-32R-A33J-07 Nchr12~68489656~Nchr12~68267405 intergenic "-," "-," chr12~chr12 68489656 68267405 3 -- 1.098612 3 2 1 3 6 TCGA-K1-A6RT-01A-32R-A33J-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 8 ++ 1.906155 8 3 5 8 10 TCGA-K1-A6RT-01A-32R-A33J-07 Nchr18~37331293~Nchr18~37115579 intergenic "-," "-," chr18~chr18 37331293 37115579 3 -- 1.098612 3 2 1 3 4 TCGA-K1-A6RT-01A-32R-A33J-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 4 ++ 1.386294 3 1 2 3 118 TCGA-K1-A6RT-01A-32R-A33J-07 Nchr1~569174~TPM2 intergenic "-," "TPM2," chr1~chr9 569174 35684799 3 -- 1.098612 3 2 1 3 10 TCGA-K1-A6RT-01A-32R-A33J-07 Nchr2~139258325~Nchr2~139057107 intergenic "-," "-," chr2~chr2 139258325 139057107 2 -- 0.693147 1 1 0 1 6 TCGA-K1-A6RT-01A-32R-A33J-07 Nchr5~155108550~SGCD intergenic "-," "SGCD," chr5~chr5 155108550 155550866 3 ++ 1.098612 2 2 0 2 6 TCGA-K1-A6RT-01A-32R-A33J-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 3 -- 0.636514 3 3 0 3 6 TCGA-K1-A6RT-01A-32R-A33J-07 Nchr7~140912504~Nchr7~141137408 intergenic "-," "-," chr7~chr7 140912504 141137408 5 ++ 1.609438 4 3 1 4 2 TCGA-K1-A6RT-01A-32R-A33J-07 Nchr8~48129698~Nchr8~54178847 intergenic "-," "-," chr8~chr8 48129698 54178847 8 -+ 1.732868 7 4 3 7 34 TCGA-K1-A6RT-01A-32R-A33J-07 PPP6R3~ATP6V0D2 fusion "PPP6R3," "ATP6V0D2,CTD-3118D11.2," chr11~chr8 68228295 87111218 2 ++ 0.693147 2 1 1 2 14 TCGA-K1-A6RT-01A-32R-A33J-07 RALGPS1~NUP210L fusion "RALGPS1," "NUP210L," chr9~chr1 129677291 153967656 7 +- 1.747868 6 6 0 6 10 TCGA-K1-A6RT-01A-32R-A33J-07 RP11-369K17.1~Nchr8~122261156 intergenic "RP11-369K17.1," "-," chr8~chr8 121947803 122261156 34 ++ 2.557467 21 3 18 21 6 TCGA-K1-A6RT-01A-32R-A33J-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 2 ++ 0.693147 2 0 2 2 2 TCGA-K1-A6RT-01A-32R-A33J-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 15 +- 1.080574 15 0 15 15 2 TCGA-K1-A6RT-01A-32R-A33J-07 RPS9~Nchr19~50223193 intergenic "RPS9," "-," chr19~chr19 54705392 50223193 3 ++ 1.098612 2 1 1 2 236 TCGA-K1-A6RT-01A-32R-A33J-07 RSPO1~RPS20 fusion "RSPO1," "RPS20," chr1~chr8 38077349 56987039 2 -- 0.693147 2 0 2 2 2 TCGA-K1-A6RT-01A-32R-A33J-07 TPM3~Nchr16~52689620 intergenic "TPM3," "-," chr1~chr16 154143930 52689620 5 ++ 1.332179 1 1 0 1 2 TCGA-K1-A6RT-01A-32R-A33J-07 VPS45~PSMB4 fusion "VPS45," "PSMB4," chr1~chr1 150044293 151374293 10 ++ 2.163956 10 8 2 10 24 TCGA-DX-A7EI-01A-11R-A33J-07 ACSS3~CYP39A1 fusion "ACSS3," "CYP39A1," chr12~chr6 81472210 46518174 50 +- 3.033333 49 25 24 49 126 TCGA-DX-A7EI-01A-11R-A33J-07 ACSS3~CYP39A1 fusion "ACSS3," "CYP39A1," chr12~chr6 81472207 46518174 3 +- 1.098612 3 2 1 3 122 TCGA-DX-A7EI-01A-11R-A33J-07 ACSS3~Nchr12~59797091 intergenic "ACSS3," "-," chr12~chr12 81537026 59797091 3 +- 1.098612 3 2 1 3 10 TCGA-DX-A7EI-01A-11R-A33J-07 ACSS3~Nchr12~79886119 intergenic "ACSS3," "-," chr12~chr12 81537026 79886119 2 +- 0.693147 2 2 0 2 14 TCGA-DX-A7EI-01A-11R-A33J-07 ACSS3~Nchr12~79890689 intergenic "ACSS3," "-," chr12~chr12 81537026 79890689 3 +- 0.636514 3 1 2 3 8 TCGA-DX-A7EI-01A-11R-A33J-07 ACSS3~Nchr12~79906110 intergenic "ACSS3," "-," chr12~chr12 81537026 79906110 8 +- 1.559581 8 5 3 8 18 TCGA-DX-A7EI-01A-11R-A33J-07 ACSS3~Nchr1~233564263 intergenic "ACSS3," "-," chr12~chr1 81472207 233564263 2 ++ 0.693147 1 0 1 1 14 TCGA-DX-A7EI-01A-11R-A33J-07 ACSS3~Nchr1~233564297 intergenic "ACSS3," "-," chr12~chr1 81472207 233564297 7 ++ 1.747868 5 4 1 5 12 TCGA-DX-A7EI-01A-11R-A33J-07 ACSS3~Nchr8~74440039 intergenic "ACSS3," "-," chr12~chr8 81537026 74440039 19 +- 2.37862 16 9 7 16 30 TCGA-DX-A7EI-01A-11R-A33J-07 ADNP~Nchr5~2405481 intergenic "ADNP," "-," chr20~chr5 49545188 2405481 20 -+ 2.345737 16 7 9 16 54 TCGA-DX-A7EI-01A-11R-A33J-07 ARFGEF1~SHC1 fusion "ARFGEF1," "SHC1," chr8~chr1 68211444 154942675 19 -- 2.40616 18 3 15 18 12 TCGA-DX-A7EI-01A-11R-A33J-07 ARHGEF25~NTRK1 fusion "ARHGEF25," "NTRK1," chr12~chr1 58008800 156841415 15 ++ 1.898927 13 8 5 13 18 TCGA-DX-A7EI-01A-11R-A33J-07 ARHGEF25~NTRK1 fusion "ARHGEF25," "NTRK1," chr12~chr1 58008800 156843425 7 ++ 1.747868 6 5 1 6 4 TCGA-DX-A7EI-01A-11R-A33J-07 ARIH1~CTC-436K13.6 fusion "ARIH1," "CTC-436K13.6," chr15~chr5 72864506 157661353 3 +- 1.098612 2 0 2 2 2 TCGA-DX-A7EI-01A-11R-A33J-07 ARIH1~Nchr5~157638211 intergenic "ARIH1," "-," chr15~chr5 72864506 157638211 7 +- 1.549826 5 4 1 5 10 TCGA-DX-A7EI-01A-11R-A33J-07 ARIH1~Nchr5~157721925 intergenic "ARIH1," "-," chr15~chr5 72864506 157721925 7 +- 1.475076 5 2 3 5 24 TCGA-DX-A7EI-01A-11R-A33J-07 ARIH1~Nchr5~157727431 intergenic "ARIH1," "-," chr15~chr5 72864506 157727431 5 +- 1.609438 4 1 3 4 12 TCGA-DX-A7EI-01A-11R-A33J-07 ASH1L~Nchr19~35463533 intergenic "ASH1L," "-," chr1~chr19 155429588 35463533 6 -- 1.56071 6 2 4 6 24 TCGA-DX-A7EI-01A-11R-A33J-07 ASH1L~Nchr19~35465463 intergenic "ASH1L," "-," chr1~chr19 155429588 35465463 32 -- 2.634728 28 12 16 28 50 TCGA-DX-A7EI-01A-11R-A33J-07 ASH1L~Nchr19~35682127 intergenic "ASH1L," "-," chr1~chr19 155429588 35682127 15 -+ 2.176186 13 7 6 13 60 TCGA-DX-A7EI-01A-11R-A33J-07 B3GNT4~Nchr21~22200975 intergenic "B3GNT4," "-," chr12~chr21 122688348 22200975 3 +- 0.636514 3 0 3 3 4 TCGA-DX-A7EI-01A-11R-A33J-07 BCAS4~NchrX~66969355 intergenic "BCAS4," "-," chr20~chrX 49458437 66969355 2 ++ 0.693147 2 2 0 2 10 TCGA-DX-A7EI-01A-11R-A33J-07 C12orf28~Nchr12~43038096 intergenic "C12orf28," "-," chr12~chr12 70330412 43038096 3 +- 1.098612 3 1 2 3 2 TCGA-DX-A7EI-01A-11R-A33J-07 C1orf112~Nchr1~163849543 intergenic "SCYL3,C1orf112,SCYL3," "-," chr1~chr1 169822846 163849543 3 -+ 1.098612 3 2 1 3 8 TCGA-DX-A7EI-01A-11R-A33J-07 C1orf9~Nchr1~172852740 intergenic "C1orf9," "-," chr1~chr1 172539870 172852740 8 ++ 1.494175 7 5 2 7 2 TCGA-DX-A7EI-01A-11R-A33J-07 C1orf9~RP1-10C16.1 fusion "C1orf9," "RP1-10C16.1," chr1~chr1 172539870 168732854 5 +- 1.609438 5 3 2 5 10 TCGA-DX-A7EI-01A-11R-A33J-07 C6orf154~Nchr12~93647897 intergenic "C6orf154," "-," chr6~chr12 43477252 93647897 4 -- 1.386294 3 2 1 3 10 TCGA-DX-A7EI-01A-11R-A33J-07 C6orf154~Nchr12~93647897 intergenic "C6orf154," "-," chr6~chr12 43476498 93647897 14 -- 2.341994 14 8 6 14 30 TCGA-DX-A7EI-01A-11R-A33J-07 CCT2~Nchr12~64927433 intergenic "CCT2," "-," chr12~chr12 69982042 64927433 3 +- 1.098612 3 1 2 3 2 TCGA-DX-A7EI-01A-11R-A33J-07 CCT2~Nchr15~62104882 intergenic "CCT2," "-," chr12~chr15 69985939 62104882 20 ++ 2.220637 19 8 11 19 38 TCGA-DX-A7EI-01A-11R-A33J-07 CCT2~Nchr15~62105115 intergenic "CCT2," "-," chr12~chr15 69985939 62105115 10 ++ 1.834372 10 7 3 10 18 TCGA-DX-A7EI-01A-11R-A33J-07 CLINT1~Nchr6~4582037 intergenic "CLINT1," "-," chr5~chr6 157218711 4582037 5 -- 1.609438 5 1 4 5 2 TCGA-DX-A7EI-01A-11R-A33J-07 CLINT1~Nchr6~4582037 intergenic "CLINT1," "-," chr5~chr6 157216371 4582037 3 -- 1.098612 3 2 1 3 4 TCGA-DX-A7EI-01A-11R-A33J-07 CLINT1~Nchr6~4630960 intergenic "CLINT1," "-," chr5~chr6 157216371 4630960 26 -- 2.468718 20 10 10 20 90 TCGA-DX-A7EI-01A-11R-A33J-07 CLINT1~Nchr6~4630960 intergenic "CLINT1," "-," chr5~chr6 157218711 4630960 6 -- 1.329661 3 2 1 3 12 TCGA-DX-A7EI-01A-11R-A33J-07 CNOT2~Nchr12~77791431 intergenic "CNOT2," "-," chr12~chr12 70659200 77791431 4 +- 1.386294 2 0 2 2 4 TCGA-DX-A7EI-01A-11R-A33J-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271491 94029544 4 -+ 1.386294 3 3 0 3 4 TCGA-DX-A7EI-01A-11R-A33J-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272682 94043012 11 -+ 1.720193 7 6 1 7 2 TCGA-DX-A7EI-01A-11R-A33J-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48265944 94048829 2 -+ 0.693147 1 1 0 1 14 TCGA-DX-A7EI-01A-11R-A33J-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48263319 94058563 3 -+ 0.636514 3 2 1 3 44 TCGA-DX-A7EI-01A-11R-A33J-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48270158 189858960 106 -+ 0.212994 4 4 0 4 2 TCGA-DX-A7EI-01A-11R-A33J-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272828 189869023 4 -+ 0.562335 4 3 1 4 6 TCGA-DX-A7EI-01A-11R-A33J-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94038920 48270408 5 +- 1.332179 1 0 1 1 14 TCGA-DX-A7EI-01A-11R-A33J-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94039133 48272461 4 +- 1.039721 3 0 3 3 2 TCGA-DX-A7EI-01A-11R-A33J-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94050374 48273337 5 +- 1.332179 1 1 0 1 2 TCGA-DX-A7EI-01A-11R-A33J-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189867060 48269237 2 +- 0.693147 2 1 1 2 2 TCGA-DX-A7EI-01A-11R-A33J-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189870985 94042395 2 ++ 0.693147 1 1 0 1 4 TCGA-DX-A7EI-01A-11R-A33J-07 CPSF6~Nchr12~68507127 intergenic "CPSF6," "-," chr12~chr12 69633486 68507127 3 ++ 1.098612 3 3 0 3 2 TCGA-DX-A7EI-01A-11R-A33J-07 CPSF6~Nchr12~68579050 intergenic "CPSF6," "-," chr12~chr12 69633486 68579050 54 ++ 2.779329 48 33 15 48 68 TCGA-DX-A7EI-01A-11R-A33J-07 CPSF6~Nchr12~68658438 intergenic "CPSF6," "-," chr12~chr12 69633486 68658438 242 ++ 3.04822 207 153 53 207 448 TCGA-DX-A7EI-01A-11R-A33J-07 CSE1L~Nchr5~2592737 intergenic "CSE1L," "-," chr20~chr5 47700699 2592737 5 +- 1.332179 4 2 2 4 4 TCGA-DX-A7EI-01A-11R-A33J-07 CTDSP1~RP5-1116C7.1 fusion "CTDSP1," "RP5-1116C7.1," chr2~chr1 219267128 172113577 3 +- 1.098612 3 0 3 3 4 TCGA-DX-A7EI-01A-11R-A33J-07 CTDSP2~LSM14A fusion "CTDSP2," "LSM14A," chr12~chr19 58240155 34699834 283 -+ 3.236859 129 52 77 129 308 TCGA-DX-A7EI-01A-11R-A33J-07 CTDSP2~Nchr21~21394893 intergenic "CTDSP2," "-," chr12~chr21 58240155 21394893 238 -+ 3.341481 72 40 32 72 190 TCGA-DX-A7EI-01A-11R-A33J-07 CTDSP2~TMTC2 fusion "CTDSP2," "TMTC2," chr12~chr12 58240155 83525989 10 -+ 2.163956 9 6 3 9 90 TCGA-DX-A7EI-01A-11R-A33J-07 CYP39A1~RP11-512M8.5 fusion "CYP39A1," "VPS33A,RP11-512M8.5," chr6~chr12 46598700 122745994 4 -- 1.039721 3 3 0 3 10 TCGA-DX-A7EI-01A-11R-A33J-07 CYP39A1~RP11-512M8.5 fusion "CYP39A1," "VPS33A,RP11-512M8.5," chr6~chr12 46604126 122745994 2 -- 0.693147 2 0 2 2 4 TCGA-DX-A7EI-01A-11R-A33J-07 DCTN2~Nchr12~58775015 intergenic "DCTN2," "-," chr12~chr12 57939811 58775015 389 -- 2.991848 348 178 170 348 984 TCGA-DX-A7EI-01A-11R-A33J-07 DCTN2~Nchr12~58777762 intergenic "DCTN2," "-," chr12~chr12 57939811 58777762 67 -- 2.998736 62 34 28 62 120 TCGA-DX-A7EI-01A-11R-A33J-07 DCTN2~Nchr12~78820361 intergenic "DCTN2," "-," chr12~chr12 57939811 78820361 9 -- 1.889159 7 3 4 7 14 TCGA-DX-A7EI-01A-11R-A33J-07 DCTN2~Nchr15~60141576 intergenic "DCTN2," "-," chr12~chr15 57939811 60141576 2 -+ 0.693147 2 1 1 2 4 TCGA-DX-A7EI-01A-11R-A33J-07 DDIT3~RP11-81H14.2 fusion "DDIT3," "RP11-81H14.2," chr12~chr12 57914201 68827151 7 -- 1.549826 5 0 5 5 6 TCGA-DX-A7EI-01A-11R-A33J-07 DDIT3~RP11-81H14.2 fusion "DDIT3,DDIT3," "RP11-81H14.2," chr12~chr12 57911489 68827151 2 -- 0.693147 2 1 1 2 6 TCGA-DX-A7EI-01A-11R-A33J-07 DISC1~MDM1 fusion "DISC1," "MDM1," chr1~chr12 231954263 68715408 14 +- 2.639057 12 7 5 12 26 TCGA-DX-A7EI-01A-11R-A33J-07 DISC1~MDM1 fusion "DISC1," "MDM1," chr1~chr12 231963669 68715408 4 +- 1.386294 2 1 1 2 2 TCGA-DX-A7EI-01A-11R-A33J-07 DSN1~Nchr20~44975781 intergenic "DSN1," "-," chr20~chr20 35383166 44975781 6 -+ 1.791759 4 1 3 4 8 TCGA-DX-A7EI-01A-11R-A33J-07 EEA1~Nchr12~43648291 intergenic "EEA1," "-," chr12~chr12 93322819 43648291 188 -+ 3.220294 170 118 52 170 450 TCGA-DX-A7EI-01A-11R-A33J-07 EEA1~Nchr12~43648291 intergenic "EEA1," "-," chr12~chr12 93299262 43648291 17 -+ 1.956187 14 10 4 14 508 TCGA-DX-A7EI-01A-11R-A33J-07 EEA1~Nchr12~54362540 intergenic "EEA1," "-," chr12~chr12 93322819 54362540 113 -- 3.142192 124 68 37 124 244 TCGA-DX-A7EI-01A-11R-A33J-07 EEA1~Nchr12~80118285 intergenic "EEA1," "-," chr12~chr12 93299262 80118285 2 -- 0.693147 2 0 2 2 250 TCGA-DX-A7EI-01A-11R-A33J-07 EEA1~Nchr12~80118285 intergenic "EEA1," "-," chr12~chr12 93322819 80118285 160 -- 3.086191 147 74 71 147 262 TCGA-DX-A7EI-01A-11R-A33J-07 EEA1~Nchr19~35394998 intergenic "EEA1," "-," chr12~chr19 93322819 35394998 35 -+ 2.654063 34 7 27 34 134 TCGA-DX-A7EI-01A-11R-A33J-07 EEA1~Nchr8~5505025 intergenic "EEA1," "-," chr12~chr8 93322819 5505025 2 -+ 0.693147 2 1 1 2 2 TCGA-DX-A7EI-01A-11R-A33J-07 EEA1~Nchr8~5510900 intergenic "EEA1," "-," chr12~chr8 93322819 5510900 6 -+ 1.791759 6 2 4 6 16 TCGA-DX-A7EI-01A-11R-A33J-07 FAM105A~AR fusion "FAM105A," "AR," chr5~chrX 14609237 66948459 5 ++ 1.609438 5 2 3 5 8 TCGA-DX-A7EI-01A-11R-A33J-07 FAM105A~AR fusion "FAM105A," "AR," chr5~chrX 14609126 66948516 8 ++ 1.732868 8 4 4 8 6 TCGA-DX-A7EI-01A-11R-A33J-07 FAM105A~AR fusion "FAM105A," "AR," chr5~chrX 14609126 66948645 4 ++ 1.386294 4 3 1 4 6 TCGA-DX-A7EI-01A-11R-A33J-07 FBXL7~CDH10 fusion "FBXL7," "CDH10," chr5~chr5 15616181 24593722 19 +- 2.652588 16 6 10 16 30 TCGA-DX-A7EI-01A-11R-A33J-07 FRS2~ACSS3 fusion "FRS2," "ACSS3," chr12~chr12 69864310 81528595 90 ++ 3.004967 86 51 35 86 182 TCGA-DX-A7EI-01A-11R-A33J-07 FRS2~ACSS3 fusion "FRS2," "ACSS3," chr12~chr12 69874139 81528595 3 ++ 1.098612 3 3 0 3 166 TCGA-DX-A7EI-01A-11R-A33J-07 FRS2~ACSS3 fusion "FRS2," "ACSS3," chr12~chr12 69864310 81536886 2 ++ 0.693147 2 2 0 2 24 TCGA-DX-A7EI-01A-11R-A33J-07 FRS2~PARP1 fusion "FRS2," "PARP1," chr12~chr1 69874139 226558218 33 +- 2.590808 29 9 20 29 1056 TCGA-DX-A7EI-01A-11R-A33J-07 FRS2~PARP1 fusion "FRS2," "PARP1," chr12~chr1 69864310 226558218 377 +- 3.233559 364 106 258 364 1018 TCGA-DX-A7EI-01A-11R-A33J-07 FRS2~TBK1 fusion "FRS2," "TBK1," chr12~chr12 69864310 64860681 65 ++ 3.135193 64 31 32 64 304 TCGA-DX-A7EI-01A-11R-A33J-07 FRS2~TBK1 fusion "FRS2," "TBK1," chr12~chr12 69874139 64860681 10 ++ 2.302585 9 5 4 9 288 TCGA-DX-A7EI-01A-11R-A33J-07 FRS2~TBK1 fusion "FRS2," "TBK1," chr12~chr12 69880077 64860681 22 ++ 2.523922 20 11 9 20 284 TCGA-DX-A7EI-01A-11R-A33J-07 FRS2~TBK1 fusion "FRS2," "TBK1," chr12~chr12 69885407 64860681 6 ++ 1.56071 5 2 3 5 302 TCGA-DX-A7EI-01A-11R-A33J-07 FRS2~TBK1 fusion "FRS2," "TBK1," chr12~chr12 69864310 64868010 11 ++ 1.972247 11 3 8 11 56 TCGA-DX-A7EI-01A-11R-A33J-07 GATAD2B~ACSS3 fusion "GATAD2B," "ACSS3," chr1~chr12 153895209 81593120 4 -+ 1.386294 4 3 1 4 10 TCGA-DX-A7EI-01A-11R-A33J-07 GPATCH2~Nchr5~943846 intergenic "GPATCH2," "-," chr1~chr5 217622591 943846 5 -+ 1.609438 3 1 2 3 8 TCGA-DX-A7EI-01A-11R-A33J-07 GPI~Nchr12~43648291 intergenic "GPI," "-," chr19~chr12 34872424 43648291 3 ++ 1.098612 3 3 0 3 10 TCGA-DX-A7EI-01A-11R-A33J-07 GPI~Nchr19~32829327 intergenic "GPI," "-," chr19~chr19 34872424 32829327 61 ++ 2.778674 60 18 42 60 554 TCGA-DX-A7EI-01A-11R-A33J-07 GPI~Nchr19~32829341 intergenic "GPI," "-," chr19~chr19 34872424 32829341 2 ++ 0.693147 2 1 1 2 536 TCGA-DX-A7EI-01A-11R-A33J-07 GPI~Nchr19~32829438 intergenic "GPI," "-," chr19~chr19 34872424 32829438 234 ++ 3.053383 223 107 116 223 466 TCGA-DX-A7EI-01A-11R-A33J-07 GPI~Nchr19~32830952 intergenic "GPI," "-," chr19~chr19 34872424 32830952 94 ++ 3.009861 87 34 53 87 252 TCGA-DX-A7EI-01A-11R-A33J-07 GPI~Nchr19~32830952 intergenic "GPI," "-," chr19~chr19 34872503 32830952 2 ++ 0.693147 2 1 1 2 122 TCGA-DX-A7EI-01A-11R-A33J-07 GPI~Nchr19~32835164 intergenic "GPI," "-," chr19~chr19 34872424 32835164 33 ++ 2.314699 30 14 16 30 54 TCGA-DX-A7EI-01A-11R-A33J-07 GRAMD1A~Nchr12~93647897 intergenic "GRAMD1A," "-," chr19~chr12 35491390 93647897 3 +- 1.098612 2 2 0 2 10 TCGA-DX-A7EI-01A-11R-A33J-07 GRAMD1A~RAB3IP fusion "GRAMD1A," "RAB3IP," chr19~chr12 35491390 70193989 75 ++ 3.083874 43 42 1 43 46 TCGA-DX-A7EI-01A-11R-A33J-07 IRX2~C5orf38 fusion "IRX2," "C5orf38," chr5~chr5 2748459 2755143 12 -+ 1.791759 11 3 8 11 20 TCGA-DX-A7EI-01A-11R-A33J-07 ITGA11~Nchr1~146571477 intergenic "ITGA11," "-," chr15~chr1 68631838 146571477 10 -- 2.025326 10 1 9 10 10 TCGA-DX-A7EI-01A-11R-A33J-07 KCNMB4~Nchr1~233559246 intergenic "KCNMB4," "-," chr12~chr1 70760850 233559246 3 +- 1.098612 3 0 3 3 4 TCGA-DX-A7EI-01A-11R-A33J-07 KCNMB4~Nchr1~233563498 intergenic "KCNMB4," "-," chr12~chr1 70760850 233563498 74 +- 2.983791 70 26 44 70 166 TCGA-DX-A7EI-01A-11R-A33J-07 KCNMB4~Nchr1~233567633 intergenic "KCNMB4," "-," chr12~chr1 70760850 233567633 34 +- 2.746271 30 16 14 30 80 TCGA-DX-A7EI-01A-11R-A33J-07 KIF5A~NAV3 fusion "KIF5A," "NAV3," chr12~chr12 57976998 78594253 34 ++ 2.65853 32 21 10 32 30 TCGA-DX-A7EI-01A-11R-A33J-07 KIFAP3~RP1-10C16.1 fusion "KIFAP3," "RP1-10C16.1," chr1~chr1 169923152 168732854 21 -- 2.42548 20 11 9 20 64 TCGA-DX-A7EI-01A-11R-A33J-07 LGR5~PPFIA2 fusion "LGR5," "PPFIA2," chr12~chr12 71928966 81851645 2 +- 0.693147 2 1 1 2 8 TCGA-DX-A7EI-01A-11R-A33J-07 LPCAT1~Nchr1~219708407 intergenic "LPCAT1," "-," chr5~chr1 1470941 219708407 2 -+ 0.693147 2 2 0 2 2 TCGA-DX-A7EI-01A-11R-A33J-07 LRIG3~Nchr12~68762048 intergenic "LRIG3," "-," chr12~chr12 59274363 68762048 39 -+ 2.608128 39 20 19 39 78 TCGA-DX-A7EI-01A-11R-A33J-07 LRIG3~Nchr12~68762048 intergenic "LRIG3," "-," chr12~chr12 59274151 68762048 15 -+ 2.395908 15 8 7 15 90 TCGA-DX-A7EI-01A-11R-A33J-07 LSAMP~Nchr3~115889768 intergenic "LSAMP," "-," chr3~chr3 116163724 115889768 4 -- 1.386294 3 1 2 3 12 TCGA-DX-A7EI-01A-11R-A33J-07 LSM14A~TMTC2 fusion "LSM14A," "TMTC2," chr19~chr12 34699956 83525989 410 ++ 3.246231 287 190 92 287 624 TCGA-DX-A7EI-01A-11R-A33J-07 MEF2D~CD55 fusion "MEF2D," "CD55," chr1~chr1 156470278 207532891 4 -+ 1.386294 3 2 1 3 8 TCGA-DX-A7EI-01A-11R-A33J-07 MOSC1~Nchr12~122753413 intergenic "MOSC1," "-," chr1~chr12 220973096 122753413 2 +- 0.693147 2 1 1 2 6 TCGA-DX-A7EI-01A-11R-A33J-07 MOSC1~RP11-512M8.5 fusion "MOSC1," "VPS33A,RP11-512M8.5," chr1~chr12 220971356 122748746 12 +- 2.138333 11 1 10 11 20 TCGA-DX-A7EI-01A-11R-A33J-07 MRPL42~FGD6 fusion "MRPL42," "FGD6," chr12~chr12 93881436 95475332 480 +- 3.172315 458 341 117 458 362 TCGA-DX-A7EI-01A-11R-A33J-07 MRPL42~Nchr12~68628309 intergenic "MRPL42," "-," chr12~chr12 93873248 68628309 213 ++ 3.228498 198 74 124 198 706 TCGA-DX-A7EI-01A-11R-A33J-07 MSRB3~HMGA2 fusion "MSRB3," "HMGA2," chr12~chr12 65762806 66345163 28 ++ 2.20209 26 18 8 26 48 TCGA-DX-A7EI-01A-11R-A33J-07 NAV1~CPM fusion "NAV1," "CPM," chr1~chr12 201709204 69279669 9 +- 2.197225 7 5 2 7 16 TCGA-DX-A7EI-01A-11R-A33J-07 NCAM2~PAWR fusion "NCAM2," "PAWR," chr21~chr12 22746333 80062188 7 +- 1.747868 7 5 2 7 6 TCGA-DX-A7EI-01A-11R-A33J-07 NR2C1~BCL7A fusion "NR2C1," "BCL7A," chr12~chr12 95461107 122468606 31 -+ 2.531453 30 24 6 30 48 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr10~77352466~C10orf11 intergenic "-," "C10orf11," chr10~chr10 77352466 77795766 3 ++ 1.098612 3 3 0 3 8 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr11~6351695~Nchr12~58250343 intergenic "-," "-," chr11~chr12 6351695 58250343 2 +- 0.693147 2 1 1 2 12 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 41 -+ 2.292805 14 0 14 14 22 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr12~42632529~KIAA0355 intergenic "-," "KIAA0355," chr12~chr19 42632529 34790584 4 ++ 1.039721 4 0 4 4 6 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr12~42918667~LRIG3 intergenic "-," "LRIG3," chr12~chr12 42918667 59284578 17 -- 2.282374 16 7 9 16 32 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr12~42960866~LRIG3 intergenic "-," "LRIG3," chr12~chr12 42960866 59284578 3 -- 1.098612 3 2 1 3 118 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr12~43650681~Nchr12~54362453 intergenic "-," "-," chr12~chr12 43650681 54362453 8 +- 1.906155 6 3 3 6 10 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr12~48627450~RP11-366L20.3 intergenic "-," "RP11-366L20.3," chr12~chr12 48627450 66328909 10 +- 1.748067 7 0 7 7 6 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr12~54343920~Nchr12~43635370 intergenic "-," "-," chr12~chr12 54343920 43635370 3 +- 1.098612 3 0 3 3 4 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr12~54344029~BEST3 intergenic "-," "BEST3," chr12~chr12 54344029 70093129 2 -- 0.693147 2 0 2 2 4 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr12~54345927~BEST3 intergenic "-," "BEST3," chr12~chr12 54345927 70093129 5 -- 1.332179 3 1 2 3 12 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr12~54351628~Nchr12~54351795 intergenic "-," "-," chr12~chr12 54351628 54351795 2 -- 0.693147 2 1 1 2 2 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr12~54352355~Nchr12~54352490 intergenic "-," "-," chr12~chr12 54352355 54352490 3 -- 0.636514 3 0 3 3 4 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr12~54359748~FAM5B intergenic "-," "FAM5B," chr12~chr1 54359748 177159700 3 -- 1.098612 2 2 0 2 4 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr12~54359748~PAWR intergenic "-," "PAWR," chr12~chr12 54359748 80069714 10 -+ 1.886697 8 7 1 8 16 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr12~54360263~BEST3 intergenic "-," "BEST3," chr12~chr12 54360263 70049593 19 +- 2.625048 16 9 7 16 28 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr12~54360263~Nchr12~43635370 intergenic "-," "-," chr12~chr12 54360263 43635370 20 +- 2.345737 18 4 14 18 28 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr12~54360263~Nchr12~43650678 intergenic "-," "-," chr12~chr12 54360263 43650678 8 +- 1.906155 8 6 2 8 904 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr12~54360263~Nchr12~43650681 intergenic "-," "-," chr12~chr12 54360263 43650681 431 +- 3.453707 430 244 164 430 994 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr12~59624923~RP11-486A14.1 intergenic "-," "RP11-486A14.1," chr12~chr12 59624923 93709321 5 -+ 1.609438 4 1 3 4 8 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr12~59624923~UBE2N intergenic "-," "UBE2N," chr12~chr12 59624923 93803855 34 -- 2.802434 25 11 14 25 68 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr12~77587776~ACSS3 intergenic "-," "ACSS3," chr12~chr12 77587776 81528595 91 ++ 3.111794 71 27 44 71 218 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr12~77587776~ACSS3 intergenic "-," "ACSS3," chr12~chr12 77587776 81536886 17 ++ 2.15006 14 9 5 14 28 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr12~77587776~Nchr12~59983490 intergenic "-," "-," chr12~chr12 77587776 59983490 2 ++ 0.693147 1 1 0 1 6 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr12~77587776~Nchr12~59984435 intergenic "-," "-," chr12~chr12 77587776 59984435 8 ++ 1.494175 7 3 4 7 12 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr12~77587776~RP1-34H18.1 intergenic "-," "RP1-34H18.1," chr12~chr12 77587776 77965639 19 ++ 2.37862 19 5 14 19 34 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr12~93647776~NAV3 intergenic "-," "NAV3," chr12~chr12 93647776 78268661 3 -+ 1.098612 3 2 1 3 6 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr12~93647776~Nchr12~59662163 intergenic "-," "-," chr12~chr12 93647776 59662163 9 -- 2.043192 6 3 3 6 24 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr12~93647776~RP11-81H14.2 intergenic "-," "RP11-81H14.2," chr12~chr12 93647776 68796222 6 -+ 1.56071 3 3 0 3 18 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr14~90085372~FOXN3 intergenic "-," "FOXN3," chr14~chr14 90085372 89878834 4 -- 0.693147 3 3 0 3 2 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr15~46491617~Nchr15~46870405 intergenic "-," "-," chr15~chr15 46491617 46870405 2 ++ 0.693147 1 1 0 1 6 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 3 ++ 1.098612 2 1 1 2 2 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr18~37331293~Nchr18~37115579 intergenic "-," "-," chr18~chr18 37331293 37115579 3 -- 1.098612 3 2 1 3 14 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr19~35682266~Nchr19~35465463 intergenic "-," "-," chr19~chr19 35682266 35465463 2 +- 0.693147 2 2 0 2 6 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 65 -+ 3.246703 57 25 32 57 400 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr1~172852839~RP1-10C16.1 intergenic "-," "RP1-10C16.1," chr1~chr1 172852839 168732854 8 +- 1.559581 5 3 2 5 2 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr1~233602549~RP11-754N21.1 intergenic "-," "RP11-754N21.1," chr1~chr12 233602549 78752516 8 +- 1.906155 7 4 3 7 2 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr1~235162222~Nchr19~35394998 intergenic "-," "-," chr1~chr19 235162222 35394998 15 -+ 1.968693 14 8 6 14 30 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr21~21394984~Nchr21~21640184 intergenic "-," "-," chr21~chr21 21394984 21640184 13 ++ 1.991509 8 1 7 8 92 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr21~21394984~Nchr21~21661606 intergenic "-," "-," chr21~chr21 21394984 21661606 14 ++ 1.767195 7 2 5 7 24 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr21~21863806~RAB3IP intergenic "-," "RAB3IP," chr21~chr12 21863806 70178500 15 ++ 2.02623 9 9 0 9 6 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr2~177065789~Nchr2~177065920 intergenic "-," "-," chr2~chr2 177065789 177065920 4 -- 1.039721 4 0 4 4 6 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr2~177065915~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065915 177065788 6 ++ 1.098612 6 0 6 6 4 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr5~111477894~C5orf13 intergenic "-," "C5orf13," chr5~chr5 111477894 111071204 2 -- 0.693147 2 2 0 2 4 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr5~14132505~Nchr5~12804316 intergenic "-," "-," chr5~chr5 14132505 12804316 24 ++ 2.144848 21 14 7 21 46 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr5~14132505~Nchr5~12805052 intergenic "-," "-," chr5~chr5 14132505 12805052 39 ++ 2.925808 32 22 10 32 64 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr5~14132505~Nchr5~12809476 intergenic "-," "-," chr5~chr5 14132505 12809476 7 ++ 1.549826 4 1 3 4 10 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr5~14132505~Nchr5~12832080 intergenic "-," "-," chr5~chr5 14132505 12832080 3 ++ 1.098612 1 1 0 1 6 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 67 ++ 2.926593 16 2 14 16 2 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40899915 3 ++ 0.636514 1 0 1 1 10 TCGA-DX-A7EI-01A-11R-A33J-07 Nchr9~33624872~Nchr9~33624988 intergenic "-," "-," chr9~chr9 33624872 33624988 2 -- 0.693147 2 1 1 2 2 TCGA-DX-A7EI-01A-11R-A33J-07 PAWR~MOSC1 fusion "PAWR," "MOSC1," chr12~chr1 80083509 220969985 18 -+ 2.50529 17 9 8 17 32 TCGA-DX-A7EI-01A-11R-A33J-07 PLD5~SYT1 fusion "PLD5," "SYT1," chr1~chr12 242687390 79842698 4 -+ 1.386294 4 1 3 4 6 TCGA-DX-A7EI-01A-11R-A33J-07 PMEPA1~Nchr5~14132398 intergenic "PMEPA1," "-," chr20~chr5 56284530 14132398 9 -+ 2.043192 2 1 1 2 28 TCGA-DX-A7EI-01A-11R-A33J-07 PPP1R12A~Nchr12~58626879 intergenic "PPP1R12A," "-," chr12~chr12 80222100 58626879 26 -- 2.22491 25 13 12 25 48 TCGA-DX-A7EI-01A-11R-A33J-07 PPP1R12A~Nchr12~58630341 intergenic "PPP1R12A," "-," chr12~chr12 80222100 58630341 66 -- 2.942934 65 33 32 65 170 TCGA-DX-A7EI-01A-11R-A33J-07 PPP1R12A~Nchr12~58635344 intergenic "PPP1R12A," "-," chr12~chr12 80222100 58635344 2 -- 0.693147 2 1 1 2 50 TCGA-DX-A7EI-01A-11R-A33J-07 PPP2R5A~Nchr1~214987756 intergenic "PPP2R5A," "-," chr1~chr1 212515622 214987756 2 ++ 0.693147 2 2 0 2 2 TCGA-DX-A7EI-01A-11R-A33J-07 PRICKLE1~LRIG3 fusion "PRICKLE1," "LRIG3," chr12~chr12 42983267 59284578 86 -- 2.917424 79 14 65 79 114 TCGA-DX-A7EI-01A-11R-A33J-07 PRICKLE1~RP11-511B23.3 fusion "PRICKLE1," "RP11-511B23.3," chr12~chr12 42983267 93569676 28 -+ 2.601682 28 6 22 28 56 TCGA-DX-A7EI-01A-11R-A33J-07 PTPRT~Nchr1~246173635 intergenic "PTPRT," "-," chr20~chr1 41385102 246173635 5 -+ 1.05492 5 2 3 5 8 TCGA-DX-A7EI-01A-11R-A33J-07 PTPRT~Nchr1~246178154 intergenic "PTPRT," "-," chr20~chr1 41385102 246178154 4 -+ 1.386294 3 3 0 3 10 TCGA-DX-A7EI-01A-11R-A33J-07 RAB3GAP2~Nchr12~93647897 intergenic "RAB3GAP2," "-," chr1~chr12 220445565 93647897 60 -- 2.953032 48 27 21 48 210 TCGA-DX-A7EI-01A-11R-A33J-07 RAB3IP~CTD-2021H9.3 fusion "RAB3IP," "CTD-2021H9.3," chr12~chr12 70150443 71441459 14 +- 2.205598 13 4 9 13 38 TCGA-DX-A7EI-01A-11R-A33J-07 RAB3IP~Nchr12~93647897 intergenic "RAB3IP,AC025263.3," "-," chr12~chr12 70195501 93647897 42 +- 2.745166 30 8 22 30 282 TCGA-DX-A7EI-01A-11R-A33J-07 RAB3IP~Nchr12~93647897 intergenic "RAB3IP," "-," chr12~chr12 70194117 93647897 27 +- 2.792416 16 7 9 16 132 TCGA-DX-A7EI-01A-11R-A33J-07 RAB3IP~Nchr12~93647897 intergenic "RAB3IP," "-," chr12~chr12 70194112 93647897 17 +- 2.313154 11 2 9 11 122 TCGA-DX-A7EI-01A-11R-A33J-07 RAB3IP~Nchr12~93684433 intergenic "RAB3IP,AC025263.3," "-," chr12~chr12 70195501 93684433 39 +- 2.718726 34 16 18 34 34 TCGA-DX-A7EI-01A-11R-A33J-07 RAB3IP~RP11-511B23.2 fusion "RAB3IP," "RP11-511B23.2," chr12~chr12 70194117 93609455 11 +- 1.720193 5 1 4 5 32 TCGA-DX-A7EI-01A-11R-A33J-07 RAB3IP~RP11-511B23.2 fusion "RAB3IP,AC025263.3," "RP11-511B23.2," chr12~chr12 70195501 93609455 29 +- 2.300586 22 13 9 22 78 TCGA-DX-A7EI-01A-11R-A33J-07 RAB3IP~RP11-511B23.2 fusion "RAB3IP," "RP11-511B23.2," chr12~chr12 70194112 93609455 3 +- 1.098612 2 1 1 2 32 TCGA-DX-A7EI-01A-11R-A33J-07 RP1-102G20.5~Nchr12~65898158 intergenic "RP1-102G20.5," "-," chr1~chr12 174917860 65898158 18 -+ 2.322188 15 4 11 15 32 TCGA-DX-A7EI-01A-11R-A33J-07 RP1-102G20.5~Nchr12~65898158 intergenic "RP1-102G20.5," "-," chr1~chr12 174911153 65898158 3 -+ 1.098612 2 1 1 2 10 TCGA-DX-A7EI-01A-11R-A33J-07 RP1-34H18.1~ACSS3 fusion "RP1-34H18.1," "ACSS3," chr12~chr12 77718994 81528595 8 ++ 1.667462 7 0 7 7 26 TCGA-DX-A7EI-01A-11R-A33J-07 RP1-34H18.1~NAV3 fusion "RP1-34H18.1," "NAV3," chr12~chr12 77966046 78334099 30 ++ 2.875448 29 14 15 29 48 TCGA-DX-A7EI-01A-11R-A33J-07 RP1-34H18.1~RP11-781A6.1 fusion "RP1-34H18.1," "RP11-781A6.1," chr12~chr12 77966046 78177043 15 ++ 2.523211 14 8 6 14 18 TCGA-DX-A7EI-01A-11R-A33J-07 RP1-34H18.1~SLC25A27 fusion "RP1-34H18.1," "SLC25A27," chr12~chr6 77718994 46636446 12 ++ 2.138333 4 2 2 4 16 TCGA-DX-A7EI-01A-11R-A33J-07 RP11-123O10.4~SYT1 fusion "RP11-123O10.4," "SYT1," chr12~chr12 67462830 79679567 23 -+ 2.34396 19 14 5 19 36 TCGA-DX-A7EI-01A-11R-A33J-07 RP11-458D21.5~Nchr20~45394463 intergenic "NOTCH2NL,RP11-458D21.5," "-," chr1~chr20 145209436 45394463 21 +- 2.375647 19 0 19 19 14 TCGA-DX-A7EI-01A-11R-A33J-07 RP11-47P18.2~RP11-6B4.1 fusion "RP11-47P18.2," "RP11-6B4.1," chr3~chr3 80820106 81144263 4 ++ 1.039721 4 1 3 4 4 TCGA-DX-A7EI-01A-11R-A33J-07 RP11-511B23.2~Nchr12~59625009 intergenic "RP11-511B23.2," "-," chr12~chr12 93584043 59625009 4 -- 1.039721 3 3 0 3 22 TCGA-DX-A7EI-01A-11R-A33J-07 RP11-511B23.2~Nchr12~59629707 intergenic "RP11-511B23.2," "-," chr12~chr12 93584043 59629707 4 -- 1.386294 3 2 1 3 6 TCGA-DX-A7EI-01A-11R-A33J-07 RP11-511B23.2~Nchr12~59662163 intergenic "RP11-511B23.2," "-," chr12~chr12 93584043 59662163 6 -- 1.56071 4 2 2 4 88 TCGA-DX-A7EI-01A-11R-A33J-07 RP11-511B23.2~Nchr12~59692438 intergenic "RP11-511B23.2," "-," chr12~chr12 93609358 59692438 49 -- 2.781321 30 16 14 30 122 TCGA-DX-A7EI-01A-11R-A33J-07 RP11-511B23.2~Nchr12~59692438 intergenic "RP11-511B23.2," "-," chr12~chr12 93584043 59692438 35 -- 2.426121 26 7 19 26 142 TCGA-DX-A7EI-01A-11R-A33J-07 RP11-512M8.5~KIAA0240 fusion "VPS33A,RP11-512M8.5," "KIAA0240," chr12~chr6 122716873 42823594 8 -+ 1.906155 6 0 6 6 4 TCGA-DX-A7EI-01A-11R-A33J-07 RP11-512M8.5~Nchr21~22314333 intergenic "VPS33A,RP11-512M8.5," "-," chr12~chr21 122748119 22314333 12 -- 2.369382 12 2 10 12 18 TCGA-DX-A7EI-01A-11R-A33J-07 RP11-512M8.5~Nchr21~22316081 intergenic "VPS33A,RP11-512M8.5," "-," chr12~chr21 122748119 22316081 3 -- 1.098612 3 1 2 3 12 TCGA-DX-A7EI-01A-11R-A33J-07 RP11-634B7.4~TRIM58 fusion "RP11-634B7.4,RP11-978I15.10," "TRIM58," chr1~chr1 247803731 248023919 3 ++ 1.098612 3 2 1 3 16 TCGA-DX-A7EI-01A-11R-A33J-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 3 ++ 1.098612 3 0 3 3 14 TCGA-DX-A7EI-01A-11R-A33J-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 3 +- 0.636514 3 0 3 3 4 TCGA-DX-A7EI-01A-11R-A33J-07 RUNX2~Nchr1~232514776 intergenic "RUNX2," "-," chr6~chr1 45480144 232514776 9 +- 1.522955 9 3 6 9 26 TCGA-DX-A7EI-01A-11R-A33J-07 SDHAF1~TSPAN8 fusion "SDHAF1," "TSPAN8," chr19~chr12 36486610 71526604 23 +- 2.607805 16 9 7 16 34 TCGA-DX-A7EI-01A-11R-A33J-07 SEMA5A~Nchr8~5165713 intergenic "SEMA5A," "-," chr5~chr8 9136616 5165713 2 -+ 0.693147 2 1 1 2 2 TCGA-DX-A7EI-01A-11R-A33J-07 SHANK1~Nchr19~36750844 intergenic "SHANK1," "-," chr19~chr19 51189494 36750844 4 -- 1.039721 4 3 1 4 14 TCGA-DX-A7EI-01A-11R-A33J-07 SLC16A7~ACSS3 fusion "SLC16A7," "ACSS3," chr12~chr12 59999415 81528595 6 ++ 1.56071 4 1 3 4 204 TCGA-DX-A7EI-01A-11R-A33J-07 SLC16A7~ACSS3 fusion "SLC16A7," "ACSS3," chr12~chr12 59990017 81528595 82 ++ 3.024221 77 28 49 77 200 TCGA-DX-A7EI-01A-11R-A33J-07 SLC25A27~Nchr6~48091482 intergenic "SLC25A27," "-," chr6~chr6 46636530 48091482 11 ++ 1.972247 5 1 4 5 26 TCGA-DX-A7EI-01A-11R-A33J-07 SLC25A27~Nchr6~48091482 intergenic "SLC25A27," "-," chr6~chr6 46637964 48091482 2 ++ 0.693147 2 2 0 2 32 TCGA-DX-A7EI-01A-11R-A33J-07 SLC38A2~CHRM3 fusion "SLC38A2," "CHRM3," chr12~chr1 46766292 239950422 6 -+ 1.791759 1 0 1 1 2 TCGA-DX-A7EI-01A-11R-A33J-07 SLC38A2~Nchr21~21863741 intergenic "SLC38A2," "-," chr12~chr21 46766292 21863741 12 -+ 1.979205 3 3 0 3 8 TCGA-DX-A7EI-01A-11R-A33J-07 SLC38A2~RAB3IP fusion "SLC38A2," "RAB3IP," chr12~chr12 46766292 70178500 61 -+ 3.146219 57 30 27 57 78 TCGA-DX-A7EI-01A-11R-A33J-07 SLC38A2~RAB3IP fusion "SLC38A2," "RAB3IP," chr12~chr12 46766292 70188217 6 -+ 1.329661 6 2 4 6 18 TCGA-DX-A7EI-01A-11R-A33J-07 TBC1D30~Nchr12~48627394 intergenic "TBC1D30," "-," chr12~chr12 65179825 48627394 14 ++ 2.639057 8 0 8 8 8 TCGA-DX-A7EI-01A-11R-A33J-07 TBC1D30~RP11-366L20.3 fusion "TBC1D30," "RP11-366L20.3," chr12~chr12 65179825 66328909 6 +- 1.56071 6 4 2 6 12 TCGA-DX-A7EI-01A-11R-A33J-07 TBC1D30~RP11-588H23.3 fusion "TBC1D30," "RP11-588H23.3," chr12~chr12 65179825 70901675 23 ++ 2.163139 21 17 4 21 28 TCGA-DX-A7EI-01A-11R-A33J-07 TRIO~Nchr20~56564454 intergenic "TRIO," "-," chr5~chr20 14406781 56564454 3 +- 0.636514 2 0 2 2 4 TCGA-DX-A7EI-01A-11R-A33J-07 TRIP13~GPATCH2 fusion "TRIP13," "GPATCH2," chr5~chr1 914692 217604707 5 +- 1.609438 5 4 1 5 4 TCGA-DX-A7EI-01A-11R-A33J-07 TRIP13~GPATCH2 fusion "TRIP13," "GPATCH2," chr5~chr1 907308 217622679 9 +- 2.043192 4 1 3 4 2 TCGA-DX-A7EI-01A-11R-A33J-07 TSPAN8~Nchr12~69409219 intergenic "TSPAN8," "-," chr12~chr12 71526473 69409219 13 -+ 2.458311 12 4 8 12 46 TCGA-DX-A7EI-01A-11R-A33J-07 VANGL2~Nchr6~48531032 intergenic "VANGL2," "-," chr1~chr6 160385698 48531032 2 +- 0.693147 1 1 0 1 4 TCGA-DX-A7EI-01A-11R-A33J-07 VANGL2~Nchr6~52505999 intergenic "VANGL2," "-," chr1~chr6 160385972 52505999 11 +- 2.145842 11 3 8 11 20 TCGA-DX-A7EI-01A-11R-A33J-07 XKR9~Nchr8~71977592 intergenic "XKR9," "-," chr8~chr8 71625811 71977592 3 ++ 1.098612 2 1 1 2 6 TCGA-DX-A7EI-01A-11R-A33J-07 YEATS4~SLC25A27 fusion "YEATS4," "SLC25A27," chr12~chr6 69764755 46636446 4 ++ 1.386294 3 3 0 3 2 TCGA-DX-A7EI-01A-11R-A33J-07 ZCRB1~RP1-102G20.5 fusion "ZCRB1," "RP1-102G20.5," chr12~chr1 42711142 174918013 82 -- 3.045383 71 34 37 71 128 TCGA-DX-A7EF-01A-11R-A33J-07 CALD1~Nchr7~7131459 intergenic "CALD1," "-," chr7~chr7 134552555 7131459 4 +- 1.039721 4 1 3 4 10 TCGA-DX-A7EF-01A-11R-A33J-07 CALD1~Nchr7~7144103 intergenic "CALD1," "-," chr7~chr7 134552555 7144103 6 +- 1.791759 5 2 3 5 20 TCGA-DX-A7EF-01A-11R-A33J-07 CALD1~Nchr7~7158069 intergenic "CALD1," "-," chr7~chr7 134552555 7158069 5 +- 1.609438 4 1 3 4 10 TCGA-DX-A7EF-01A-11R-A33J-07 CALD1~Nchr7~7167616 intergenic "CALD1," "-," chr7~chr7 134552555 7167616 7 +- 1.475076 4 1 3 4 8 TCGA-DX-A7EF-01A-11R-A33J-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266740 94035596 4 -+ 1.386294 2 2 0 2 10 TCGA-DX-A7EF-01A-11R-A33J-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94042395 3 -+ 1.098612 2 1 1 2 6 TCGA-DX-A7EF-01A-11R-A33J-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48269193 94043553 6 -+ 1.329661 4 4 0 4 36 TCGA-DX-A7EF-01A-11R-A33J-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273675 94047856 9 -+ 1.21489 8 7 1 8 14 TCGA-DX-A7EF-01A-11R-A33J-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48265891 94050321 3 -+ 1.098612 2 1 1 2 18 TCGA-DX-A7EF-01A-11R-A33J-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48267220 189858764 2 -+ 0.693147 2 1 1 2 6 TCGA-DX-A7EF-01A-11R-A33J-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268774 189859267 2 -+ 0.693147 2 1 1 2 2 TCGA-DX-A7EF-01A-11R-A33J-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268840 189862992 3 -+ 0.636514 3 2 1 3 6 TCGA-DX-A7EF-01A-11R-A33J-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266529 189867690 30 -+ 0.887451 30 28 1 30 28 TCGA-DX-A7EF-01A-11R-A33J-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48273675 189868137 2 -+ 0.693147 1 1 0 1 6 TCGA-DX-A7EF-01A-11R-A33J-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266284 189870165 2 -+ 0.693147 2 1 1 2 12 TCGA-DX-A7EF-01A-11R-A33J-07 COL1A1~FN1 fusion "COL1A1," "FN1," chr17~chr2 48270399 216232628 2 -- 0.693147 2 1 1 2 6 TCGA-DX-A7EF-01A-11R-A33J-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48266636 6 +- 1.329661 3 2 1 3 16 TCGA-DX-A7EF-01A-11R-A33J-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48268285 3 +- 1.098612 1 1 0 1 24 TCGA-DX-A7EF-01A-11R-A33J-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049717 48269239 4 +- 1.386294 4 2 2 4 24 TCGA-DX-A7EF-01A-11R-A33J-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049712 48272170 5 +- 1.332179 2 0 2 2 22 TCGA-DX-A7EF-01A-11R-A33J-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189871716 48275363 5 +- 1.609438 2 1 1 2 2 TCGA-DX-A7EF-01A-11R-A33J-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189868157 48275865 4 +- 1.386294 4 3 1 4 2 TCGA-DX-A7EF-01A-11R-A33J-07 COL6A2~COL1A1 fusion "COL6A2," "COL1A1," chr21~chr17 47544583 48275353 3 +- 0.636514 3 1 2 3 4 TCGA-DX-A7EF-01A-11R-A33J-07 DAB1~Nchr1~58436537 intergenic "DAB1," "-," chr1~chr1 58715912 58436537 4 -- 1.386294 4 1 3 4 2 TCGA-DX-A7EF-01A-11R-A33J-07 FN1~COL1A1 fusion "FN1," "COL1A1," chr2~chr17 216243980 48264124 5 -- 1.332179 5 0 5 5 6 TCGA-DX-A7EF-01A-11R-A33J-07 HAS2~Nchr8~122413884 intergenic "HAS2," "-," chr8~chr8 122653093 122413884 18 -+ 2.428274 15 8 7 15 332 TCGA-DX-A7EF-01A-11R-A33J-07 HAS2~Nchr8~122415122 intergenic "HAS2," "-," chr8~chr8 122648651 122415122 3 -+ 1.098612 3 0 3 3 2 TCGA-DX-A7EF-01A-11R-A33J-07 HAS2~Nchr8~122415122 intergenic "HAS2," "-," chr8~chr8 122653093 122415122 162 -+ 2.975964 107 43 64 107 216 TCGA-DX-A7EF-01A-11R-A33J-07 HAS2~Nchr8~122484162 intergenic "HAS2," "-," chr8~chr8 122653093 122484162 2 -+ 0.693147 2 0 2 2 40 TCGA-DX-A7EF-01A-11R-A33J-07 HAS2~Nchr8~122485353 intergenic "HAS2," "-," chr8~chr8 122653093 122485353 4 -+ 1.039721 4 0 4 4 64 TCGA-DX-A7EF-01A-11R-A33J-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 120 -- 2.471469 120 119 1 120 46 TCGA-DX-A7EF-01A-11R-A33J-07 NDUFAF2~Nchr4~182315727 intergenic "NDUFAF2," "-," chr5~chr4 60369041 182315727 11 +- 2.145842 4 3 1 4 6 TCGA-DX-A7EF-01A-11R-A33J-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 27 -+ 2.25852 19 0 19 19 10 TCGA-DX-A7EF-01A-11R-A33J-07 Nchr14~58283422~SLC35F4 intergenic "-," "SLC35F4," chr14~chr14 58283422 58060842 7 -- 1.549826 6 4 2 6 8 TCGA-DX-A7EF-01A-11R-A33J-07 Nchr14~58332441~SLC35F4 intergenic "-," "SLC35F4," chr14~chr14 58332441 58060842 13 -- 2.098147 12 11 1 12 12 TCGA-DX-A7EF-01A-11R-A33J-07 Nchr14~90085372~FOXN3 intergenic "-," "FOXN3," chr14~chr14 90085372 89878834 3 -- 0.636514 3 3 0 3 10 TCGA-DX-A7EF-01A-11R-A33J-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 7 ++ 1.747868 5 2 3 5 10 TCGA-DX-A7EF-01A-11R-A33J-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 7 ++ 1.549826 7 2 5 7 22 TCGA-DX-A7EF-01A-11R-A33J-07 Nchr17~43661938~PXDNL intergenic "-," "PXDNL," chr17~chr8 43661938 52580442 5 -+ 1.332179 5 0 5 5 10 TCGA-DX-A7EF-01A-11R-A33J-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 21 -+ 2.582424 20 12 8 20 62 TCGA-DX-A7EF-01A-11R-A33J-07 Nchr3~187872040~LPP intergenic "-," "LPP," chr3~chr3 187872040 188123900 2 ++ 0.693147 2 0 2 2 2 TCGA-DX-A7EF-01A-11R-A33J-07 Nchr5~155108550~SGCD intergenic "-," "SGCD," chr5~chr5 155108550 155550866 6 ++ 1.791759 3 1 2 3 12 TCGA-DX-A7EF-01A-11R-A33J-07 Nchr7~115090031~RP11-458K10.1 intergenic "-," "RP11-458K10.1," chr7~chr7 115090031 115313239 2 ++ 0.693147 1 1 0 1 8 TCGA-DX-A7EF-01A-11R-A33J-07 Nchr7~140912504~Nchr7~141137408 intergenic "-," "-," chr7~chr7 140912504 141137408 18 ++ 2.476221 15 6 9 15 22 TCGA-DX-A7EF-01A-11R-A33J-07 Nchr7~73297190~RUNDC3B intergenic "-," "RUNDC3B," chr7~chr7 73297190 87370815 6 ++ 1.791759 4 4 0 4 8 TCGA-DX-A7EF-01A-11R-A33J-07 Nchr8~122485447~Nchr8~122255945 intergenic "-," "-," chr8~chr8 122485447 122255945 5 +- 1.609438 2 2 0 2 12 TCGA-DX-A7EF-01A-11R-A33J-07 Nchr9~33624650~Nchr9~33624745 intergenic "-," "-," chr9~chr9 33624650 33624745 2 -- 0.693147 2 2 0 2 2 TCGA-DX-A7EF-01A-11R-A33J-07 Nchr9~33624872~Nchr9~33624988 intergenic "-," "-," chr9~chr9 33624872 33624988 4 -- 1.039721 4 4 0 4 12 TCGA-DX-A7EF-01A-11R-A33J-07 PLXNA4~Nchr7~142045021 intergenic "PLXNA4," "-," chr7~chr7 132174051 142045021 5 -- 1.609438 5 3 2 5 8 TCGA-DX-A7EF-01A-11R-A33J-07 PLXNA4~Nchr7~142163635 intergenic "PLXNA4," "-," chr7~chr7 132174051 142163635 4 -+ 1.039721 4 1 3 4 32 TCGA-DX-A7EF-01A-11R-A33J-07 PLXNA4~Nchr7~142165695 intergenic "PLXNA4," "-," chr7~chr7 132174051 142165695 7 -+ 1.549826 7 4 3 7 20 TCGA-DX-A7EF-01A-11R-A33J-07 PRMT7~EXOC4 fusion "PRMT7," "EXOC4," chr16~chr7 68380183 133580352 16 ++ 2.339372 15 10 5 15 34 TCGA-DX-A7EF-01A-11R-A33J-07 PRMT7~EXOC4 fusion "PRMT7," "EXOC4," chr16~chr7 68382334 133580352 8 ++ 1.906155 7 3 4 7 4 TCGA-DX-A7EF-01A-11R-A33J-07 RAB8B~Nchr7~79656276 intergenic "RAB8B," "-," chr15~chr7 63481947 79656276 6 +- 1.011404 6 6 0 6 4 TCGA-DX-A7EF-01A-11R-A33J-07 RP1-34H18.1~NAV3 fusion "RP1-34H18.1," "NAV3," chr12~chr12 77966046 78334099 4 ++ 1.386294 3 1 2 3 8 TCGA-DX-A7EF-01A-11R-A33J-07 RP5-1084H12.1~DLX6-AS1 fusion "RP5-1084H12.1," "DLX6-AS1," chr7~chr7 91125916 96598430 22 +- 2.413341 22 11 11 22 38 TCGA-DX-A7EF-01A-11R-A33J-07 TP53~PXDNL fusion "TP53," "PXDNL," chr17~chr8 7577499 52567320 4 -- 1.386294 3 1 2 3 2 TCGA-DX-A7EF-01A-11R-A33J-07 TPD52L2~Nchr5~25580297 intergenic "TPD52L2," "-," chr20~chr5 62507228 25580297 2 +- 0.693147 1 1 0 1 12 TCGA-DX-A7EF-01A-11R-A33J-07 TPT1~Nchr6~144522012 intergenic "TPT1," "-," chr13~chr6 45914301 144522012 6 -- 0.867563 4 4 0 4 18 TCGA-DX-A7EF-01A-11R-A33J-07 TRIO~TERT fusion "TRIO," "TERT," chr5~chr5 14420130 1282739 38 +- 2.465353 31 19 12 31 86 TCGA-DX-A7EF-01A-11R-A33J-07 TRIO~TERT fusion "TRIO," "TERT," chr5~chr5 14420130 1294781 2 +- 0.693147 1 0 1 1 6 TCGA-DX-A7EF-01A-11R-A33J-07 WBSCR16~Nchr15~60521383 intergenic "WBSCR16," "-," chr7~chr15 74463348 60521383 4 -- 1.039721 4 4 0 4 4 TCGA-UE-A6QT-01A-12R-A32Q-07 EIF1~Nchr17~21163258 intergenic "EIF1," "-," chr17~chr17 39847063 21163258 2 ++ 0.693147 2 0 2 2 26 TCGA-UE-A6QT-01A-12R-A32Q-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238905 31324034 7 -- 1.549826 3 3 0 3 116 TCGA-UE-A6QT-01A-12R-A32Q-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32487941 32548633 440 -- 2.420574 95 7 88 95 94 TCGA-UE-A6QT-01A-12R-A32Q-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 1630 -- 2.130121 913 266 646 913 4 TCGA-UE-A6QT-01A-12R-A32Q-07 HLA-F~Nchr6~29857194 intergenic "HLA-F," "-," chr6~chr6 29692107 29857194 2 -- 0.693147 2 2 0 2 58 TCGA-UE-A6QT-01A-12R-A32Q-07 IGHG4~IGHG1 fusion "IGHG4," "IGHG1," chr14~chr14 106091233 106208132 6 -- 1.011404 6 4 2 6 34 TCGA-UE-A6QT-01A-12R-A32Q-07 IGHG4~IGHG1 fusion "IGHG4," "IGHG1," chr14~chr14 106091233 106208305 3 -- 1.098612 3 0 3 3 116 TCGA-UE-A6QT-01A-12R-A32Q-07 IGHG4~IGHG1 fusion "IGHG4," "IGHG1," chr14~chr14 106091485 106208719 4 -- 1.039721 4 0 4 4 6 TCGA-UE-A6QT-01A-12R-A32Q-07 IGHV3-15~IGHM fusion "IGHV3-15," "IGHM," chr14~chr14 106610727 106322322 4 -- 1.386294 4 4 0 4 12 TCGA-UE-A6QT-01A-12R-A32Q-07 IGHV4-34~IGHM fusion "IGHV4-34," "IGHM," chr14~chr14 106829809 106322322 8 -- 1.667462 5 0 5 5 8 TCGA-UE-A6QT-01A-12R-A32Q-07 Nchr11~27603245~RPS25 intergenic "-," "RPS25," chr11~chr11 27603245 118889038 11 -- 2.271869 11 4 7 11 168 TCGA-UE-A6QT-01A-12R-A32Q-07 Nchr11~47213097~RPS20 intergenic "-," "RPS20," chr11~chr8 47213097 56986962 2 +- 0.693147 2 0 2 2 30 TCGA-UE-A6QT-01A-12R-A32Q-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 32 -+ 2.103402 23 0 23 23 6 TCGA-UE-A6QT-01A-12R-A32Q-07 Nchr15~95399585~GLTSCR2 intergenic "-," "GLTSCR2," chr15~chr19 95399585 48257998 2 +- 0.693147 1 1 0 1 4 TCGA-UE-A6QT-01A-12R-A32Q-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 2 ++ 0.693147 2 0 2 2 4 TCGA-UE-A6QT-01A-12R-A32Q-07 Nchr17~17286994~Nchr17~17287089 intergenic "-," "-," chr17~chr17 17286994 17287089 2 -- 0.693147 2 0 2 2 10 TCGA-UE-A6QT-01A-12R-A32Q-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 4 ++ 0.562335 3 2 1 3 14 TCGA-UE-A6QT-01A-12R-A32Q-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 24 -+ 2.542669 21 10 11 21 156 TCGA-UE-A6QT-01A-12R-A32Q-07 Nchr2~177065915~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065915 177065788 3 ++ 0.636514 3 0 3 3 6 TCGA-UE-A6QT-01A-12R-A32Q-07 Nchr2~81775871~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81775871 82075877 8 ++ 1.906155 3 3 0 3 2 TCGA-UE-A6QT-01A-12R-A32Q-07 Nchr6~29856480~HLA-B intergenic "-," "HLA-B," chr6~chr6 29856480 31324034 19 -- 2.187271 9 1 8 9 396 TCGA-UE-A6QT-01A-12R-A32Q-07 Nchr9~72832294~Nchr9~72832461 intergenic "-," "-," chr9~chr9 72832294 72832461 2 -- 0.693147 1 1 0 1 6 TCGA-UE-A6QT-01A-12R-A32Q-07 ZNF480~Nchr19~51244269 intergenic "ZNF480," "-," chr19~chr19 52803737 51244269 19 +- 2.360736 13 7 6 13 12 TCGA-SG-A6Z7-01A-12R-A32Q-07 AC011497.1~Nchr19~43155239 intergenic "AC011497.1," "-," chr19~chr19 42929356 43155239 4 ++ 1.039721 4 2 2 4 2 TCGA-SG-A6Z7-01A-12R-A32Q-07 ARHGEF2~Nchr12~58360834 intergenic "ARHGEF2," "-," chr1~chr12 155952898 58360834 7 -- 1.94591 6 2 4 6 10 TCGA-SG-A6Z7-01A-12R-A32Q-07 ARHGEF2~Nchr1~153442000 intergenic "ARHGEF2," "-," chr1~chr1 155952898 153442000 2 -+ 0.693147 1 1 0 1 12 TCGA-SG-A6Z7-01A-12R-A32Q-07 BSG~Nchr19~22040875 intergenic "BSG," "-," chr19~chr19 579656 22040875 9 ++ 1.676988 9 0 9 9 16 TCGA-SG-A6Z7-01A-12R-A32Q-07 CACYBP~Nchr2~184472861 intergenic "CACYBP," "-," chr1~chr2 174973792 184472861 3 -- 1.098612 3 3 0 3 2 TCGA-SG-A6Z7-01A-12R-A32Q-07 COL14A1~Nchr8~99431656 intergenic "COL14A1," "-," chr8~chr8 121211805 99431656 5 ++ 1.609438 4 2 2 4 4 TCGA-SG-A6Z7-01A-12R-A32Q-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049717 48269241 2 +- 0.693147 2 1 1 2 2 TCGA-SG-A6Z7-01A-12R-A32Q-07 CPM~DNM3 fusion "CPM," "DNM3," chr12~chr1 69326458 172277868 4 -+ 1.386294 2 0 2 2 18 TCGA-SG-A6Z7-01A-12R-A32Q-07 CPM~Nchr12~59488501 intergenic "CPM," "-," chr12~chr12 69326458 59488501 7 -- 1.549826 7 4 3 7 6 TCGA-SG-A6Z7-01A-12R-A32Q-07 CPM~Nchr12~59507271 intergenic "CPM," "-," chr12~chr12 69326458 59507271 6 -+ 1.56071 5 1 4 5 10 TCGA-SG-A6Z7-01A-12R-A32Q-07 CPM~Nchr12~59513499 intergenic "CPM," "-," chr12~chr12 69326458 59513499 4 -+ 1.386294 4 0 4 4 8 TCGA-SG-A6Z7-01A-12R-A32Q-07 CPM~Nchr12~59566289 intergenic "CPM," "-," chr12~chr12 69260676 59566289 7 -- 1.277034 6 2 4 6 6 TCGA-SG-A6Z7-01A-12R-A32Q-07 CPM~RP11-150C16.1 fusion "CPM," "RP11-150C16.1," chr12~chr12 69326458 59396535 2 -+ 0.693147 1 0 1 1 8 TCGA-SG-A6Z7-01A-12R-A32Q-07 CPM~RP11-150C16.1 fusion "CPM," "RP11-150C16.1," chr12~chr12 69326458 59449787 4 -+ 1.039721 3 1 2 3 18 TCGA-SG-A6Z7-01A-12R-A32Q-07 DAZAP2~Nchr2~203066607 intergenic "DAZAP2," "-," chr12~chr2 51632613 203066607 3 -- 0.636514 3 3 0 3 2 TCGA-SG-A6Z7-01A-12R-A32Q-07 DAZAP2~Nchr2~203066610 intergenic "DAZAP2," "-," chr12~chr2 51632608 203066610 2 -- 0.693147 2 2 0 2 4 TCGA-SG-A6Z7-01A-12R-A32Q-07 DNM3~Nchr12~74300720 intergenic "DNM3," "-," chr1~chr12 172100428 74300720 39 ++ 2.785858 31 16 15 31 334 TCGA-SG-A6Z7-01A-12R-A32Q-07 DNM3~Nchr12~74307737 intergenic "DNM3," "-," chr1~chr12 172100428 74307737 24 ++ 2.65055 18 10 8 18 254 TCGA-SG-A6Z7-01A-12R-A32Q-07 DNM3~Nchr12~74312978 intergenic "DNM3," "-," chr1~chr12 172100428 74312978 98 ++ 3.078498 75 56 19 75 176 TCGA-SG-A6Z7-01A-12R-A32Q-07 DNM3~Nchr12~74326923 intergenic "DNM3," "-," chr1~chr12 172100428 74326923 5 ++ 0.950271 4 2 2 4 12 TCGA-SG-A6Z7-01A-12R-A32Q-07 EXOC4~Nchr12~59488501 intergenic "EXOC4," "-," chr7~chr12 132959926 59488501 13 +- 2.245035 13 10 3 13 26 TCGA-SG-A6Z7-01A-12R-A32Q-07 FMO5~PDIA3 fusion "FMO5," "PDIA3," chr1~chr15 146650373 44055385 2 -+ 0.693147 2 1 1 2 78 TCGA-SG-A6Z7-01A-12R-A32Q-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31237270 31322303 2 -- 0.693147 1 0 1 1 8 TCGA-SG-A6Z7-01A-12R-A32Q-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 36 -- 2.005263 35 35 0 35 32 TCGA-SG-A6Z7-01A-12R-A32Q-07 HMGA2~Nchr12~68267405 intergenic "HMGA2," "-," chr12~chr12 66219161 68267405 14 +- 2.106577 13 4 9 13 22 TCGA-SG-A6Z7-01A-12R-A32Q-07 HN1~Nchr2~174296244 intergenic "HN1," "-," chr17~chr2 73143615 174296244 3 -- 1.098612 2 2 0 2 4 TCGA-SG-A6Z7-01A-12R-A32Q-07 IPO8~Nchr6~67018992 intergenic "IPO8," "-," chr12~chr6 30822117 67018992 7 -+ 1.747868 6 1 5 6 26 TCGA-SG-A6Z7-01A-12R-A32Q-07 KCNMB4~MARS fusion "KCNMB4," "ARHGAP9,MARS," chr12~chr12 70760850 57871052 238 +- 3.247207 230 86 144 230 274 TCGA-SG-A6Z7-01A-12R-A32Q-07 LGR5~FAM19A2 fusion "LGR5," "FAM19A2," chr12~chr12 71928966 62261207 25 +- 2.366169 20 5 15 20 20 TCGA-SG-A6Z7-01A-12R-A32Q-07 LRIG3~Nchr12~68200337 intergenic "LRIG3," "-," chr12~chr12 59279613 68200337 9 -+ 2.043192 8 5 3 8 22 TCGA-SG-A6Z7-01A-12R-A32Q-07 LRIG3~Nchr12~68207581 intergenic "LRIG3," "-," chr12~chr12 59279613 68207581 2 -+ 0.693147 2 2 0 2 6 TCGA-SG-A6Z7-01A-12R-A32Q-07 LRIG3~Nchr12~68277694 intergenic "LRIG3," "-," chr12~chr12 59279613 68277694 33 -+ 2.91868 32 21 11 32 48 TCGA-SG-A6Z7-01A-12R-A32Q-07 LRIG3~Nchr12~68321638 intergenic "LRIG3," "-," chr12~chr12 59279613 68321638 3 -+ 1.098612 3 1 2 3 8 TCGA-SG-A6Z7-01A-12R-A32Q-07 LRIG3~Nchr12~91245360 intergenic "LRIG3," "-," chr12~chr12 59276651 91245360 7 -+ 1.549826 7 7 0 7 410 TCGA-SG-A6Z7-01A-12R-A32Q-07 LRIG3~Nchr12~91245364 intergenic "LRIG3," "-," chr12~chr12 59276651 91245364 209 -+ 3.335445 197 180 17 197 348 TCGA-SG-A6Z7-01A-12R-A32Q-07 MARCH9~Nchr12~74332320 intergenic "MARCH9," "-," chr12~chr12 58150867 74332320 5 ++ 1.609438 5 3 2 5 4 TCGA-SG-A6Z7-01A-12R-A32Q-07 MDM2~Nchr12~58639213 intergenic "MDM2," "-," chr12~chr12 69203072 58639213 2 ++ 0.693147 2 0 2 2 18 TCGA-SG-A6Z7-01A-12R-A32Q-07 MDM2~Nchr12~58733475 intergenic "MDM2," "-," chr12~chr12 69203072 58733475 2 ++ 0.693147 2 0 2 2 14 TCGA-SG-A6Z7-01A-12R-A32Q-07 METTL21B~Nchr12~70340869 intergenic "METTL21B," "-," chr12~chr12 58168550 70340869 2 +- 0.693147 2 2 0 2 50 TCGA-SG-A6Z7-01A-12R-A32Q-07 NCRNA00238~Nchr14~66584657 intergenic "NCRNA00238," "-," chr14~chr14 66962980 66584657 7 -- 0.796312 5 4 1 5 4 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr11~47212988~RPS20 intergenic "-," "RPS20," chr11~chr8 47212988 56986943 5 -+ 1.609438 2 2 0 2 110 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr11~47213097~RPS20 intergenic "-," "RPS20," chr11~chr8 47213097 56986962 7 +- 1.475076 4 0 4 4 72 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 31 -+ 2.081154 20 0 20 20 14 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr11~93921719~Nchr11~93921880 intergenic "-," "-," chr11~chr11 93921719 93921880 4 -- 1.039721 3 0 3 3 2 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr12~24366277~SOX5 intergenic "-," "SOX5," chr12~chr12 24366277 24048958 5 -- 1.609438 3 3 0 3 2 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr12~57853258~CPM intergenic "-," "CPM," chr12~chr12 57853258 69260828 6 -- 1.329661 5 1 4 5 8 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr12~59513603~TRHDE intergenic "-," "TRHDE," chr12~chr12 59513603 72680461 3 ++ 1.098612 1 0 1 1 10 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr12~59513625~TRHDE intergenic "-," "TRHDE," chr12~chr12 59513625 72680461 3 ++ 0.636514 3 1 2 3 12 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr12~60412806~MDM2 intergenic "-," "MDM2," chr12~chr12 60412806 69214105 5 -+ 1.609438 4 0 4 4 2 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr12~68199368~LRIG3 intergenic "-," "LRIG3," chr12~chr12 68199368 59278134 2 -+ 0.693147 2 2 0 2 2 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr12~69523715~NUP107 intergenic "-," "NUP107," chr12~chr12 69523715 69124890 6 ++ 1.791759 1 0 1 1 14 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr12~70097254~CNOT2 intergenic "-," "CNOT2," chr12~chr12 70097254 70747609 4 ++ 1.386294 3 2 1 3 16 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr12~70384036~Nchr12~77584099 intergenic "-," "-," chr12~chr12 70384036 77584099 2 -- 0.693147 2 1 1 2 2 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr12~74335897~CDK4 intergenic "-," "CDK4," chr12~chr12 74335897 58145519 6 -- 1.329661 4 4 0 4 18 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr12~74544782~Nchr12~74336041 intergenic "-," "-," chr12~chr12 74544782 74336041 6 -- 1.791759 2 1 1 2 10 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr12~79247013~LRRIQ1 intergenic "-," "LRRIQ1," chr12~chr12 79247013 85516451 2 -+ 0.693147 2 2 0 2 8 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr12~79255900~LRRIQ1 intergenic "-," "LRRIQ1," chr12~chr12 79255900 85517848 3 -+ 1.098612 3 1 2 3 16 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr12~85736497~Nchr3~120583440 intergenic "-," "-," chr12~chr3 85736497 120583440 38 +- 2.338573 33 31 2 33 30 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr12~85817982~LRIG3 intergenic "-," "LRIG3," chr12~chr12 85817982 59308117 6 +- 1.56071 6 2 4 6 8 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr13~45911005~TPT1 intergenic "-," "TPT1," chr13~chr13 45911005 45911193 2 -- 0.693147 2 0 2 2 20 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr14~28125544~Nchr14~27791347 intergenic "-," "-," chr14~chr14 28125544 27791347 6 -- 1.329661 6 1 5 6 18 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr14~45066112~Nchr14~44862941 intergenic "-," "-," chr14~chr14 45066112 44862941 5 -- 1.609438 1 1 0 1 16 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr14~45267133~Nchr14~44862941 intergenic "-," "-," chr14~chr14 45267133 44862941 13 -- 2.351673 12 5 7 12 34 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr14~45267133~Nchr14~45066216 intergenic "-," "-," chr14~chr14 45267133 45066216 16 -- 2.187322 4 2 2 4 14 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr14~90085372~FOXN3 intergenic "-," "FOXN3," chr14~chr14 90085372 89878834 11 -- 2.019815 9 9 0 9 20 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr15~47476615~SEMA6D intergenic "-," "SEMA6D," chr15~chr15 47476615 47704590 10 ++ 2.163956 3 3 0 3 2 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 12 ++ 1.979205 11 1 10 11 60 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 16 ++ 2.393312 16 8 8 16 44 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 86 -+ 2.939113 78 43 35 78 160 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr1~169612532~Nchr12~60840905 intergenic "-," "-," chr1~chr12 169612532 60840905 16 -- 1.667462 1 0 1 1 14 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr1~171090890~Nchr1~170776745 intergenic "-," "-," chr1~chr1 171090890 170776745 3 -- 0.636514 3 2 1 3 26 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr1~172182021~Nchr12~62092119 intergenic "-," "-," chr1~chr12 172182021 62092119 3 -+ 0.636514 3 1 2 3 14 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr1~172182021~Nchr12~62093045 intergenic "-," "-," chr1~chr12 172182021 62093045 3 -+ 1.098612 3 2 1 3 12 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr1~173834393~Nchr1~173835032 intergenic "-," "-," chr1~chr1 173834393 173835032 2 -- 0.693147 1 1 0 1 22 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr1~187042156~RP11-445P19.1 intergenic "-," "RP11-445P19.1," chr1~chr1 187042156 187412760 3 ++ 0.636514 2 0 2 2 10 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr1~192685339~Nchr1~192685560 intergenic "-," "-," chr1~chr1 192685339 192685560 2 -- 0.693147 2 2 0 2 112 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr1~192685560~Nchr1~192685302 intergenic "-," "-," chr1~chr1 192685560 192685302 2 ++ 0.693147 2 2 0 2 112 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr1~40599003~OAZ1 intergenic "-," "OAZ1," chr1~chr19 40599003 2273108 2 +- 0.693147 2 0 2 2 18 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr1~98520059~Nchr1~98792365 intergenic "-," "-," chr1~chr1 98520059 98792365 3 ++ 1.098612 3 1 2 3 2 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr1~99473933~RPL5 intergenic "-," "RPL5," chr1~chr1 99473933 93303175 7 ++ 1.475076 2 2 0 2 18 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr1~99473933~RPL5 intergenic "-," "RPL5," chr1~chr1 99473933 93306148 2 ++ 0.693147 2 2 0 2 8 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr1~99473933~RPL5 intergenic "-," "RPL5," chr1~chr1 99473933 93306150 6 ++ 1.56071 5 5 0 5 8 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr20~34634304~Nchr20~34634471 intergenic "-," "-," chr20~chr20 34634304 34634471 4 -- 1.039721 4 0 4 4 14 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr2~177065785~Nchr2~177065905 intergenic "-," "-," chr2~chr2 177065785 177065905 3 -- 0.636514 3 0 3 3 2 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr2~177065789~Nchr2~177065913 intergenic "-," "-," chr2~chr2 177065789 177065913 2 -- 0.693147 2 0 2 2 4 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr2~177065909~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065909 177065788 3 ++ 1.098612 3 0 3 3 2 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr2~177065929~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065929 177065788 2 ++ 0.693147 2 0 2 2 142 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr3~75264616~Nchr3~75264461 intergenic "-," "-," chr3~chr3 75264616 75264461 3 ++ 1.098612 2 1 1 2 4 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr5~155108550~SGCD intergenic "-," "SGCD," chr5~chr5 155108550 155550866 6 ++ 1.56071 4 3 1 4 8 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr5~93018833~Nchr5~93018967 intergenic "-," "-," chr5~chr5 93018833 93018967 2 -- 0.693147 2 0 2 2 80 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 4 -- 1.039721 3 3 0 3 8 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr6~72313862~FAM60A intergenic "-," "FAM60A," chr6~chr12 72313862 31451158 124 +- 3.027833 100 69 31 100 180 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr6~72490124~RIMS1 intergenic "-," "RIMS1," chr6~chr6 72490124 72806652 7 ++ 1.94591 5 1 4 5 6 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr6~8438264~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8438264 8784424 3 ++ 1.098612 3 1 2 3 2 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr7~130792038~MDM2 intergenic "-," "MDM2," chr7~chr12 130792038 69218143 2 -+ 0.693147 2 0 2 2 4 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr7~130792479~MDM2 intergenic "-," "MDM2," chr7~chr12 130792479 69214105 11 -+ 2.019815 11 10 1 11 52 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr7~130792479~MDM2 intergenic "-," "MDM2," chr7~chr12 130792479 69218143 21 -+ 2.334549 21 10 11 21 38 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr7~130792479~Nchr12~60413193 intergenic "-," "-," chr7~chr12 130792479 60413193 13 -- 1.95126 13 9 4 13 18 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr7~25901764~AC003090.1 intergenic "-," "AC003090.1," chr7~chr7 25901764 25701351 3 -- 1.098612 3 2 1 3 14 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr8~67834936~Nchr8~67834960 intergenic "-," "-," chr8~chr8 67834936 67834960 2 -- 0.693147 2 1 1 2 38 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr9~14531945~NFIB intergenic "-," "NFIB," chr9~chr9 14531945 14307519 3 -- 1.098612 3 2 1 3 4 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr9~28947816~LINGO2 intergenic "-," "LINGO2," chr9~chr9 28947816 28670278 10 -- 1.973001 3 2 1 3 8 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr9~29212088~Nchr9~28947912 intergenic "-," "-," chr9~chr9 29212088 28947912 7 -- 1.549826 1 1 0 1 6 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr9~29212920~Nchr9~28947912 intergenic "-," "-," chr9~chr9 29212920 28947912 4 -- 1.386294 3 0 3 3 6 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr9~31973110~Nchr9~32267638 intergenic "-," "-," chr9~chr9 31973110 32267638 11 ++ 2.271869 8 1 7 8 6 TCGA-SG-A6Z7-01A-12R-A32Q-07 Nchr9~31973110~Nchr9~32322732 intergenic "-," "-," chr9~chr9 31973110 32322732 3 ++ 0.636514 3 0 3 3 4 TCGA-SG-A6Z7-01A-12R-A32Q-07 NchrX~64295792~NchrX~64586518 intergenic "-," "-," chrX~chrX 64295792 64586518 2 ++ 0.693147 2 1 1 2 4 TCGA-SG-A6Z7-01A-12R-A32Q-07 NchrX~73072154~NchrX~73072006 intergenic "-," "-," chrX~chrX 73072154 73072006 3 ++ 1.098612 3 0 3 3 6 TCGA-SG-A6Z7-01A-12R-A32Q-07 NchrX~73494177~NchrX~73251675 intergenic "-," "-," chrX~chrX 73494177 73251675 4 -- 1.039721 3 2 1 3 14 TCGA-SG-A6Z7-01A-12R-A32Q-07 PITRM1~Nchr10~1887777 intergenic "PITRM1," "-," chr10~chr10 3208421 1887777 2 -- 0.693147 2 0 2 2 12 TCGA-SG-A6Z7-01A-12R-A32Q-07 PLXNA4~Nchr12~59507271 intergenic "PLXNA4," "-," chr7~chr12 132229978 59507271 3 -+ 1.098612 3 0 3 3 76 TCGA-SG-A6Z7-01A-12R-A32Q-07 PLXNA4~Nchr12~59507271 intergenic "PLXNA4," "-," chr7~chr12 132261181 59507271 13 -+ 2.098147 11 3 8 11 118 TCGA-SG-A6Z7-01A-12R-A32Q-07 PLXNA4~Nchr12~59513499 intergenic "PLXNA4," "-," chr7~chr12 132261181 59513499 29 -+ 2.757571 26 12 14 26 100 TCGA-SG-A6Z7-01A-12R-A32Q-07 PLXNA4~Nchr12~59513499 intergenic "PLXNA4," "-," chr7~chr12 132229978 59513499 2 -+ 0.693147 2 1 1 2 102 TCGA-SG-A6Z7-01A-12R-A32Q-07 PLXNA4~Nchr12~69377135 intergenic "PLXNA4," "-," chr7~chr12 131982850 69377135 7 -+ 1.747868 5 2 3 5 2 TCGA-SG-A6Z7-01A-12R-A32Q-07 PLXNA4~Nchr12~74442360 intergenic "PLXNA4," "-," chr7~chr12 131982850 74442360 3 -- 0.636514 3 1 2 3 14 TCGA-SG-A6Z7-01A-12R-A32Q-07 PLXNA4~RP11-150C16.1 fusion "PLXNA4," "RP11-150C16.1," chr7~chr12 132229978 59449787 8 -+ 1.667462 8 5 3 8 26 TCGA-SG-A6Z7-01A-12R-A32Q-07 PLXNA4~RP11-150C16.1 fusion "PLXNA4," "RP11-150C16.1," chr7~chr12 132261181 59449787 5 -+ 0.950271 5 1 4 5 12 TCGA-SG-A6Z7-01A-12R-A32Q-07 PLXNA4~TRHDE fusion "PLXNA4," "TRHDE," chr7~chr12 132261181 72680461 2 -+ 0.693147 2 0 2 2 8 TCGA-SG-A6Z7-01A-12R-A32Q-07 POC1B~TNR fusion "POC1B," "TNR," chr12~chr1 89885713 175375913 4 -- 1.386294 4 0 4 4 12 TCGA-SG-A6Z7-01A-12R-A32Q-07 POLE4~Nchr2~75503636 intergenic "POLE4," "-," chr2~chr2 75187273 75503636 2 ++ 0.693147 2 2 0 2 2 TCGA-SG-A6Z7-01A-12R-A32Q-07 PPP1R16A~RP11-434I12.2 fusion "PPP1R16A," "RP11-434I12.2," chr8~chr8 145725774 74227840 2 +- 0.693147 2 2 0 2 4 TCGA-SG-A6Z7-01A-12R-A32Q-07 RAB21~DNM3 fusion "RAB21," "DNM3," chr12~chr1 72149068 172050972 166 ++ 2.928842 148 75 73 148 900 TCGA-SG-A6Z7-01A-12R-A32Q-07 RAB21~DNM3 fusion "RAB21," "DNM3," chr12~chr1 72149068 172100315 2 ++ 0.693147 2 1 1 2 208 TCGA-SG-A6Z7-01A-12R-A32Q-07 RAB21~Nchr12~73605279 intergenic "RAB21," "-," chr12~chr12 72167802 73605279 5 +- 1.332179 4 4 0 4 6 TCGA-SG-A6Z7-01A-12R-A32Q-07 RAB21~Nchr12~73626500 intergenic "RAB21," "-," chr12~chr12 72167802 73626500 6 +- 1.791759 5 1 4 5 10 TCGA-SG-A6Z7-01A-12R-A32Q-07 RAB21~Nchr12~73629861 intergenic "RAB21," "-," chr12~chr12 72167802 73629861 8 +- 1.906155 8 2 6 8 12 TCGA-SG-A6Z7-01A-12R-A32Q-07 RAB21~Nchr12~73634138 intergenic "RAB21," "-," chr12~chr12 72167802 73634138 6 +- 1.56071 5 1 4 5 12 TCGA-SG-A6Z7-01A-12R-A32Q-07 RAB21~Nchr12~73684645 intergenic "RAB21," "-," chr12~chr12 72167802 73684645 2 +- 0.693147 1 0 1 1 6 TCGA-SG-A6Z7-01A-12R-A32Q-07 RAB21~SLC4A8 fusion "RAB21," "SLC4A8," chr12~chr12 72167802 51863398 37 ++ 2.688074 35 22 13 35 50 TCGA-SG-A6Z7-01A-12R-A32Q-07 RAB21~SLC4A8 fusion "RAB21," "SLC4A8," chr12~chr12 72164479 51863398 6 ++ 1.56071 6 1 5 6 20 TCGA-SG-A6Z7-01A-12R-A32Q-07 RAB21~SLC4A8 fusion "RAB21," "SLC4A8," chr12~chr12 72149068 51863398 2 ++ 0.693147 2 2 0 2 10 TCGA-SG-A6Z7-01A-12R-A32Q-07 RABGAP1L~Nchr21~28132587 intergenic "RABGAP1L," "-," chr1~chr21 174128795 28132587 6 +- 1.56071 5 1 4 5 18 TCGA-SG-A6Z7-01A-12R-A32Q-07 RP1-45C12.1~Nchr1~170776745 intergenic "RP1-45C12.1," "-," chr1~chr1 171137243 170776745 23 -- 2.668079 10 7 3 10 22 TCGA-SG-A6Z7-01A-12R-A32Q-07 RP1-45C12.1~Nchr1~170794937 intergenic "RP1-45C12.1," "-," chr1~chr1 171137243 170794937 5 -- 1.332179 3 1 2 3 26 TCGA-SG-A6Z7-01A-12R-A32Q-07 RP11-123O10.4~GRIP1 fusion "RP11-123O10.4," "GRIP1," chr12~chr12 67462830 66990707 6 -- 1.242453 3 0 3 3 12 TCGA-SG-A6Z7-01A-12R-A32Q-07 RP11-123O10.4~HELB fusion "RP11-123O10.4," "HELB," chr12~chr12 67462830 66712418 3 -+ 0.636514 3 1 2 3 10 TCGA-SG-A6Z7-01A-12R-A32Q-07 RP11-123O10.4~Nchr12~68267405 intergenic "RP11-123O10.4," "-," chr12~chr12 67462830 68267405 5 -- 1.332179 5 2 3 5 12 TCGA-SG-A6Z7-01A-12R-A32Q-07 RP11-14D22.2~PRICKLE2 fusion "RP11-14D22.2," "RP11-129B22.7,PRICKLE2," chr3~chr3 64430159 64184643 2 -- 0.693147 2 2 0 2 10 TCGA-SG-A6Z7-01A-12R-A32Q-07 RP11-571M6.15~Nchr12~70332230 intergenic "METTL21B,RP11-571M6.15," "-," chr12~chr12 58166911 70332230 3 +- 1.098612 2 1 1 2 4 TCGA-SG-A6Z7-01A-12R-A32Q-07 RP11-571M6.15~Nchr12~70340869 intergenic "METTL21B,RP11-571M6.15," "-," chr12~chr12 58166911 70340869 36 +- 2.676278 31 6 25 31 52 TCGA-SG-A6Z7-01A-12R-A32Q-07 RP11-634B7.4~TRIM58 fusion "RP11-634B7.4,RP11-978I15.10," "TRIM58," chr1~chr1 247803731 248023919 3 ++ 1.098612 3 1 2 3 10 TCGA-SG-A6Z7-01A-12R-A32Q-07 RPL27A~Nchr6~153603718 intergenic "RPL27A," "-," chr11~chr6 8707239 153603718 3 ++ 1.098612 2 1 1 2 156 TCGA-SG-A6Z7-01A-12R-A32Q-07 RWDD1~C6orf204 fusion "RWDD1," "C6orf204," chr6~chr6 116906020 118845083 5 +- 1.609438 4 1 3 4 30 TCGA-SG-A6Z7-01A-12R-A32Q-07 SCYL3~Nchr12~69371801 intergenic "SCYL3," "-," chr1~chr12 169857817 69371801 4 -- 1.386294 4 2 2 4 2 TCGA-SG-A6Z7-01A-12R-A32Q-07 SLC16A7~SYT1 fusion "SLC16A7," "SYT1," chr12~chr12 59990017 79441077 130 ++ 3.169987 26 25 1 26 122 TCGA-SG-A6Z7-01A-12R-A32Q-07 SSBP4~Nchr18~12067469 intergenic "SSBP4," "-," chr19~chr18 18543693 12067469 12 ++ 1.236685 12 8 4 12 40 TCGA-SG-A6Z7-01A-12R-A32Q-07 SYT1~EPYC fusion "SYT1," "EPYC," chr12~chr12 79441142 91372039 7 +- 1.94591 2 0 2 2 10 TCGA-SG-A6Z7-01A-12R-A32Q-07 SYT1~EPYC fusion "SYT1," "EPYC," chr12~chr12 79441142 91396355 181 +- 2.874479 93 10 83 93 192 TCGA-SG-A6Z7-01A-12R-A32Q-07 SYT1~Nchr12~91398813 intergenic "SYT1," "-," chr12~chr12 79441142 91398813 61 +- 2.728571 28 6 22 28 208 TCGA-SG-A6Z7-01A-12R-A32Q-07 SYT1~Nchr12~91399668 intergenic "SYT1," "-," chr12~chr12 79441142 91399668 9 +- 2.197225 3 0 3 3 184 TCGA-SG-A6Z7-01A-12R-A32Q-07 TRAK2~Nchr12~69523621 intergenic "TRAK2," "-," chr2~chr12 202285140 69523621 5 -+ 1.332179 3 1 2 3 2 TCGA-SG-A6Z7-01A-12R-A32Q-07 TRHDE~Nchr7~122910577 intergenic "TRHDE," "-," chr12~chr7 72680734 122910577 6 +- 1.56071 6 3 3 6 32 TCGA-SG-A6Z7-01A-12R-A32Q-07 TRHDE~Nchr7~122917843 intergenic "TRHDE," "-," chr12~chr7 72680734 122917843 20 +- 2.553682 18 4 14 18 72 TCGA-SG-A6Z7-01A-12R-A32Q-07 TRHDE~Nchr7~122967639 intergenic "TRHDE," "-," chr12~chr7 72680734 122967639 29 +- 2.566358 29 20 9 29 78 TCGA-SG-A6Z7-01A-12R-A32Q-07 TSFM~LRRIQ1 fusion "TSFM," "LRRIQ1," chr12~chr12 58180945 85517848 7 ++ 1.549826 7 4 3 7 38 TCGA-SG-A6Z7-01A-12R-A32Q-07 TSFM~LRRIQ1 fusion "TSFM," "LRRIQ1," chr12~chr12 58180945 85546058 3 ++ 1.098612 3 2 1 3 2 TCGA-SG-A6Z7-01A-12R-A32Q-07 TSFM~METTL11B fusion "TSFM," "METTL11B," chr12~chr1 58180945 170125010 4 ++ 1.039721 4 2 2 4 28 TCGA-SG-A6Z7-01A-12R-A32Q-07 TSFM~METTL11B fusion "TSFM," "METTL11B," chr12~chr1 58180945 170127110 5 ++ 1.609438 5 3 2 5 30 TCGA-SG-A6Z7-01A-12R-A32Q-07 TSFM~Nchr12~57250295 intergenic "TSFM," "-," chr12~chr12 58180945 57250295 8 ++ 1.255482 7 0 7 7 18 TCGA-SG-A6Z7-01A-12R-A32Q-07 TSFM~Nchr1~170109557 intergenic "TSFM," "-," chr12~chr1 58180945 170109557 10 ++ 2.025326 8 4 4 8 10 TCGA-SG-A6Z7-01A-12R-A32Q-07 TSPAN31~CA11 fusion "TSPAN31,CDK4," "CA11," chr12~chr19 58142152 49149300 2 +- 0.693147 2 1 1 2 2 TCGA-SG-A6Z7-01A-12R-A32Q-07 USP15~Nchr12~74551664 intergenic "USP15," "-," chr12~chr12 62719714 74551664 13 +- 2.245035 5 5 0 5 12 TCGA-SG-A6Z7-01A-12R-A32Q-07 USP15~Nchr12~74593853 intergenic "USP15," "-," chr12~chr12 62719714 74593853 10 +- 1.748067 9 2 7 9 26 TCGA-SG-A6Z7-01A-12R-A32Q-07 USP15~Nchr12~74593853 intergenic "USP15," "-," chr12~chr12 62743088 74593853 6 +- 1.329661 6 5 1 6 48 TCGA-SG-A6Z7-01A-12R-A32Q-07 XXbac-BPG296P20.16~Nchr11~119692920 intergenic "DDX39B,DDX39B,XXbac-BPG296P20.16,DDX39B," "-," chr6~chr11 31503210 119692920 2 -+ 0.693147 2 0 2 2 2 TCGA-SG-A6Z7-01A-12R-A32Q-07 ZNF251~CHMP4C fusion "ZNF251," "CHMP4C," chr8~chr8 145979068 82665299 11 -+ 1.84622 11 5 6 11 36 TCGA-QQ-A5VD-01A-21R-A32Q-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049717 48269223 5 +- 1.332179 5 4 1 5 2 TCGA-QQ-A5VD-01A-21R-A32Q-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 2 +- 0.693147 2 0 2 2 58 TCGA-QQ-A5VD-01A-21R-A32Q-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 601 -- 2.466563 600 600 0 600 268 TCGA-QQ-A5VD-01A-21R-A32Q-07 MYH9~Nchr22~36935956 intergenic "MYH9," "-," chr22~chr22 36737415 36935956 12 -- 1.632631 12 8 4 12 12 TCGA-QQ-A5VD-01A-21R-A32Q-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 54 -+ 2.451347 34 0 34 34 44 TCGA-QQ-A5VD-01A-21R-A32Q-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 2 ++ 0.693147 1 0 1 1 32 TCGA-QQ-A5VD-01A-21R-A32Q-07 Nchr19~50223254~RPS9 intergenic "-," "RPS9," chr19~chr19 50223254 54704726 2 ++ 0.693147 1 0 1 1 42 TCGA-QQ-A5VD-01A-21R-A32Q-07 Nchr1~171639696~Nchr1~171639868 intergenic "-," "-," chr1~chr1 171639696 171639868 9 -- 1.522955 7 4 3 7 10 TCGA-QQ-A5VD-01A-21R-A32Q-07 Nchr2~177065788~Nchr2~177065931 intergenic "-," "-," chr2~chr2 177065788 177065931 3 -- 0.636514 3 0 3 3 458 TCGA-QQ-A5VD-01A-21R-A32Q-07 Nchr2~177065909~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065909 177065788 13 ++ 1.585771 13 0 13 13 18 TCGA-QQ-A5VD-01A-21R-A32Q-07 Nchr2~74380071~Nchr2~74380198 intergenic "-," "-," chr2~chr2 74380071 74380198 3 -- 0.636514 3 0 3 3 2 TCGA-QQ-A5VD-01A-21R-A32Q-07 Nchr3~186618015~Nchr3~186618218 intergenic "-," "-," chr3~chr3 186618015 186618218 3 -- 0.636514 1 1 0 1 8 TCGA-QQ-A5VD-01A-21R-A32Q-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 7 -- 1.277034 4 4 0 4 8 TCGA-QQ-A5VD-01A-21R-A32Q-07 SSBP4~Nchr18~12067469 intergenic "SSBP4," "-," chr19~chr18 18543693 12067469 6 ++ 1.56071 6 3 3 6 20 TCGA-QC-A6FX-01A-11R-A32Q-07 AC073043.2~Nchr2~195437735 intergenic "AC073043.2," "-," chr2~chr2 200684295 195437735 3 -+ 0.636514 2 2 0 2 8 TCGA-QC-A6FX-01A-11R-A32Q-07 ADAM12~Nchr2~7417235 intergenic "ADAM12," "-," chr10~chr2 127967484 7417235 7 -+ 1.549826 3 1 2 3 4 TCGA-QC-A6FX-01A-11R-A32Q-07 ADCY9~Nchr16~11473679 intergenic "ADCY9," "-," chr16~chr16 4163751 11473679 14 -+ 2.143952 13 7 6 13 48 TCGA-QC-A6FX-01A-11R-A32Q-07 AP000318.2~Nchr21~32298001 intergenic "MRPS6,SLC5A3,AP000318.2," "-," chr21~chr21 35446045 32298001 7 ++ 1.475076 7 4 3 7 8 TCGA-QC-A6FX-01A-11R-A32Q-07 AP000318.2~Nchr21~32303774 intergenic "MRPS6,SLC5A3,AP000318.2," "-," chr21~chr21 35446045 32303774 2 ++ 0.693147 1 0 1 1 14 TCGA-QC-A6FX-01A-11R-A32Q-07 AP000318.2~Nchr21~32376778 intergenic "MRPS6,SLC5A3,AP000318.2," "-," chr21~chr21 35446045 32376778 3 ++ 1.098612 3 2 1 3 10 TCGA-QC-A6FX-01A-11R-A32Q-07 B4GALT5~Nchr19~30272053 intergenic "B4GALT5," "-," chr20~chr19 48273105 30272053 18 -+ 2.50529 17 6 11 17 52 TCGA-QC-A6FX-01A-11R-A32Q-07 BRD8~Nchr5~135710850 intergenic "BRD8," "-," chr5~chr5 137513260 135710850 4 -+ 1.386294 4 2 2 4 10 TCGA-QC-A6FX-01A-11R-A32Q-07 BRD8~Nchr5~135711999 intergenic "BRD8," "-," chr5~chr5 137513260 135711999 3 -+ 0.636514 3 0 3 3 4 TCGA-QC-A6FX-01A-11R-A32Q-07 CASKIN2~Nchr17~54647295 intergenic "CASKIN2," "-," chr17~chr17 73511482 54647295 3 -+ 1.098612 3 3 0 3 4 TCGA-QC-A6FX-01A-11R-A32Q-07 COL8A1~C3orf26 fusion "COL8A1," "C3orf26," chr3~chr3 99513226 99865817 7 ++ 1.747868 7 3 4 7 8 TCGA-QC-A6FX-01A-11R-A32Q-07 CREB1~Nchr2~185529344 intergenic "CREB1," "-," chr2~chr2 208442379 185529344 5 ++ 1.332179 5 4 1 5 24 TCGA-QC-A6FX-01A-11R-A32Q-07 EIF4A1~Nchr17~2490444 intergenic "EIF4A1," "-," chr17~chr17 7480742 2490444 2 ++ 0.693147 2 0 2 2 2 TCGA-QC-A6FX-01A-11R-A32Q-07 FAM129B~LRSAM1 fusion "FAM129B," "LRSAM1," chr9~chr9 130279136 130243462 4 -+ 1.039721 4 1 3 4 10 TCGA-QC-A6FX-01A-11R-A32Q-07 GAPDH~NchrX~46299827 intergenic "GAPDH," "-," chr12~chrX 6646369 46299827 6 -- 1.329661 1 1 0 1 34 TCGA-QC-A6FX-01A-11R-A32Q-07 GPR133~Nchr12~131810261 intergenic "GPR133," "-," chr12~chr12 131498885 131810261 53 ++ 3.060714 50 34 16 50 92 TCGA-QC-A6FX-01A-11R-A32Q-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 987 -- 2.432973 413 103 308 413 62 TCGA-QC-A6FX-01A-11R-A32Q-07 LONP2~Nchr16~34796654 intergenic "LONP2," "-," chr16~chr16 48330076 34796654 3 +- 0.636514 2 0 2 2 10 TCGA-QC-A6FX-01A-11R-A32Q-07 MRPL18~C6orf118 fusion "MRPL18," "C6orf118," chr6~chr6 160212158 165703556 8 +- 2.079442 8 4 4 8 40 TCGA-QC-A6FX-01A-11R-A32Q-07 MYO9B~Nchr20~38385969 intergenic "MYO9B," "-," chr19~chr20 17213367 38385969 3 ++ 1.098612 3 1 2 3 18 TCGA-QC-A6FX-01A-11R-A32Q-07 Nchr11~47213097~RPS20 intergenic "-," "RPS20," chr11~chr8 47213097 56986962 3 +- 1.098612 3 0 3 3 16 TCGA-QC-A6FX-01A-11R-A32Q-07 Nchr17~54576459~PRR11 intergenic "-," "PRR11," chr17~chr17 54576459 57247109 19 ++ 2.114308 19 5 14 19 8 TCGA-QC-A6FX-01A-11R-A32Q-07 Nchr19~3870923~FTL intergenic "-," "FTL," chr19~chr19 3870923 49468806 2 -- 0.693147 2 0 2 2 46 TCGA-QC-A6FX-01A-11R-A32Q-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 59 -+ 3.00852 48 20 28 48 216 TCGA-QC-A6FX-01A-11R-A32Q-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145013721 4 -+ 1.039721 2 1 1 2 14 TCGA-QC-A6FX-01A-11R-A32Q-07 Nchr1~192685469~Nchr1~192685560 intergenic "-," "-," chr1~chr1 192685469 192685560 3 -- 0.636514 3 3 0 3 6 TCGA-QC-A6FX-01A-11R-A32Q-07 Nchr1~48459706~RP11-543D5.3 intergenic "-," "RP11-543D5.3," chr1~chr1 48459706 48244216 2 -- 0.693147 2 0 2 2 4 TCGA-QC-A6FX-01A-11R-A32Q-07 Nchr2~177065909~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065909 177065788 3 ++ 1.098612 3 0 3 3 8 TCGA-QC-A6FX-01A-11R-A32Q-07 Nchr2~177065929~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065929 177065788 2 ++ 0.693147 2 0 2 2 174 TCGA-QC-A6FX-01A-11R-A32Q-07 Nchr2~45223806~KRTCAP2 intergenic "-," "KRTCAP2," chr2~chr1 45223806 155141996 6 -- 0.867563 1 1 0 1 12 TCGA-QC-A6FX-01A-11R-A32Q-07 Nchr2~81709228~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81709228 82075877 3 ++ 1.098612 2 2 0 2 6 TCGA-QC-A6FX-01A-11R-A32Q-07 Nchr2~81775871~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81775871 82075877 7 ++ 1.747868 5 3 2 5 12 TCGA-QC-A6FX-01A-11R-A32Q-07 Nchr3~187872040~LPP intergenic "-," "LPP," chr3~chr3 187872040 188123900 4 ++ 1.386294 3 0 3 3 4 TCGA-QC-A6FX-01A-11R-A32Q-07 Nchr5~93018536~NPM1 intergenic "-," "NPM1," chr5~chr5 93018536 170837597 5 -- 1.332179 4 3 1 4 36 TCGA-QC-A6FX-01A-11R-A32Q-07 Nchr6~8558876~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8558876 8784424 4 ++ 1.386294 2 0 2 2 6 TCGA-QC-A6FX-01A-11R-A32Q-07 PCOLCE2~RPL8 fusion "PCOLCE2," "RPL8," chr3~chr8 142546420 146017296 2 -- 0.693147 1 0 1 1 44 TCGA-QC-A6FX-01A-11R-A32Q-07 PDE10A~Nchr6~164283417 intergenic "PDE10A," "-," chr6~chr6 165929429 164283417 3 -- 1.098612 3 2 1 3 16 TCGA-QC-A6FX-01A-11R-A32Q-07 PGGT1B~Nchr5~105921094 intergenic "PGGT1B," "-," chr5~chr5 114566673 105921094 12 -- 2.253858 11 3 8 11 14 TCGA-QC-A6FX-01A-11R-A32Q-07 PHF20~RBM39 fusion "PHF20," "RBM39," chr20~chr20 34389527 34330035 3 +- 0.636514 3 3 0 3 18 TCGA-QC-A6FX-01A-11R-A32Q-07 RHOA~CCDC71 fusion "RHOA," "CCDC71," chr3~chr3 49412867 49201693 4 -- 1.039721 4 1 3 4 6 TCGA-QC-A6FX-01A-11R-A32Q-07 RP11-12A2.3~AHI1 fusion "RP11-12A2.3," "AHI1," chr6~chr6 139793664 135732682 2 -- 0.693147 2 1 1 2 10 TCGA-QC-A6FX-01A-11R-A32Q-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 3 ++ 1.098612 2 2 0 2 10 TCGA-QC-A6FX-01A-11R-A32Q-07 SEC22B~Nchr1~145117033 intergenic "SEC22B," "-," chr1~chr1 145116890 145117033 2 -- 0.693147 2 1 1 2 6 TCGA-QC-A6FX-01A-11R-A32Q-07 SEPT9~DNAI2 fusion "SEPT9," "DNAI2," chr17~chr17 75398785 72285733 3 ++ 1.098612 3 0 3 3 8 TCGA-QC-A6FX-01A-11R-A32Q-07 SNX9~SERAC1 fusion "SNX9," "SERAC1," chr6~chr6 158349734 158579396 7 +- 1.747868 5 2 3 5 8 TCGA-QC-A6FX-01A-11R-A32Q-07 STXBP5~SASH1 fusion "STXBP5," "SASH1," chr6~chr6 147560406 148789681 12 ++ 2.022809 12 6 6 12 10 TCGA-QC-A6FX-01A-11R-A32Q-07 VTA1~Nchr6~143408748 intergenic "VTA1," "-," chr6~chr6 142468536 143408748 6 +- 1.56071 5 0 5 5 22 TCGA-QC-A6FX-01A-11R-A32Q-07 VTA1~Nchr6~143440711 intergenic "VTA1," "-," chr6~chr6 142468536 143440711 6 +- 1.329661 3 0 3 3 30 TCGA-QC-A6FX-01A-11R-A32Q-07 ZC3H12D~Nchr6~156489628 intergenic "ZC3H12D," "-," chr6~chr6 149782967 156489628 3 -- 0.636514 2 0 2 2 6 TCGA-QC-A6FX-01A-11R-A32Q-07 ZNF429~ZNF569 fusion "ZNF429," "ZNF569," chr19~chr19 21688576 37935866 5 +- 0.950271 5 0 5 5 18 TCGA-QC-A6FX-01A-11R-A32Q-07 ZNF507~Nchr19~28206766 intergenic "ZNF507," "-," chr19~chr19 32851524 28206766 9 +- 1.889159 8 5 3 8 24 TCGA-QC-A6FX-01A-11R-A32Q-07 ZNF730~CEP89 fusion "ZNF730," "CEP89," chr19~chr19 23299978 33392318 13 +- 1.778233 13 2 11 13 20 TCGA-UE-A6QU-01A-12R-A32Q-07 AE000660.9~AE000661.28 fusion "AE000660.9," "AE000661.28,TRAC," chr14~chr14 22573674 23016447 8 ++ 1.906155 7 1 6 7 4 TCGA-UE-A6QU-01A-12R-A32Q-07 APP~Nchr21~18064572 intergenic "APP," "-," chr21~chr21 27264034 18064572 5 -- 1.609438 5 1 4 5 36 TCGA-UE-A6QU-01A-12R-A32Q-07 ATP5F1~Nchr6~139936115 intergenic "ATP5F1," "-," chr1~chr6 111998803 139936115 2 ++ 0.693147 2 2 0 2 6 TCGA-UE-A6QU-01A-12R-A32Q-07 CLASP1~Nchr2~122050665 intergenic "CLASP1," "-," chr2~chr2 122363277 122050665 5 -- 1.332179 5 0 5 5 14 TCGA-UE-A6QU-01A-12R-A32Q-07 CPSF4~RP11-762I7.5 fusion "CPSF4," "RP11-762I7.5,SARNP," chr7~chr12 99040711 56184376 2 +- 0.693147 1 1 0 1 16 TCGA-UE-A6QU-01A-12R-A32Q-07 DAZAP2~Nchr2~203066607 intergenic "DAZAP2," "-," chr12~chr2 51632613 203066607 3 -- 1.098612 2 2 0 2 6 TCGA-UE-A6QU-01A-12R-A32Q-07 FAM83D~Nchr18~5003288 intergenic "FAM83D," "-," chr20~chr18 37555568 5003288 27 +- 2.567659 21 20 1 21 56 TCGA-UE-A6QU-01A-12R-A32Q-07 GNL3L~GABRB3 fusion "GNL3L," "GABRB3," chrX~chr15 54559018 26828561 30 +- 2.635976 29 7 22 29 152 TCGA-UE-A6QU-01A-12R-A32Q-07 HLA-A~HLA-G fusion "HLA-A," "HLA-G," chr6~chr6 29911320 29797195 9 ++ 0.686962 5 0 5 5 12 TCGA-UE-A6QU-01A-12R-A32Q-07 HLA-B~Nchr6~29902006 intergenic "HLA-B," "-," chr6~chr6 31323352 29902006 2 ++ 0.693147 1 1 0 1 136 TCGA-UE-A6QU-01A-12R-A32Q-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 1717 -- 2.519857 892 321 561 892 26 TCGA-UE-A6QU-01A-12R-A32Q-07 MCC~Nchr5~109248972 intergenic "MCC," "-," chr5~chr5 112630026 109248972 6 -- 1.56071 6 5 1 6 38 TCGA-UE-A6QU-01A-12R-A32Q-07 MOBKL1A~Nchr4~72539164 intergenic "MOBKL1A,DCK," "-," chr4~chr4 71863899 72539164 3 +- 1.098612 2 0 2 2 12 TCGA-UE-A6QU-01A-12R-A32Q-07 NCOA7~Nchr6~126801724 intergenic "NCOA7," "-," chr6~chr6 126136550 126801724 11 ++ 1.420572 10 4 6 10 18 TCGA-UE-A6QU-01A-12R-A32Q-07 NCOA7~Nchr6~126843226 intergenic "NCOA7," "-," chr6~chr6 126136550 126843226 2 ++ 0.693147 2 1 1 2 2 TCGA-UE-A6QU-01A-12R-A32Q-07 NKAIN3~Nchr5~24379495 intergenic "NKAIN3," "-," chr8~chr5 63659688 24379495 3 ++ 0.636514 3 0 3 3 6 TCGA-UE-A6QU-01A-12R-A32Q-07 NRIP1~AF127936.7 fusion "NRIP1," "AF127936.7," chr21~chr21 16437066 16230029 7 -- 1.94591 7 7 0 7 10 TCGA-UE-A6QU-01A-12R-A32Q-07 Nchr10~86320576~Nchr10~86320784 intergenic "-," "-," chr10~chr10 86320576 86320784 2 -- 0.693147 2 2 0 2 10 TCGA-UE-A6QU-01A-12R-A32Q-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 44 -+ 2.388645 25 0 25 25 36 TCGA-UE-A6QU-01A-12R-A32Q-07 Nchr12~24366277~SOX5 intergenic "-," "SOX5," chr12~chr12 24366277 24048958 5 -- 1.609438 4 4 0 4 2 TCGA-UE-A6QU-01A-12R-A32Q-07 Nchr14~105058668~Nchr14~105058762 intergenic "-," "-," chr14~chr14 105058668 105058762 2 -- 0.693147 2 0 2 2 2 TCGA-UE-A6QU-01A-12R-A32Q-07 Nchr15~45021520~Nchr15~45021667 intergenic "-," "-," chr15~chr15 45021520 45021667 2 -- 0.693147 2 2 0 2 2 TCGA-UE-A6QU-01A-12R-A32Q-07 Nchr16~15794588~Nchr16~15794812 intergenic "-," "-," chr16~chr16 15794588 15794812 2 -- 0.693147 2 1 1 2 2 TCGA-UE-A6QU-01A-12R-A32Q-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 7 -- 1.747868 5 0 5 5 4 TCGA-UE-A6QU-01A-12R-A32Q-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 32 -+ 2.853499 27 13 14 27 128 TCGA-UE-A6QU-01A-12R-A32Q-07 Nchr2~177065788~Nchr2~177065931 intergenic "-," "-," chr2~chr2 177065788 177065931 2 -- 0.693147 2 0 2 2 84 TCGA-UE-A6QU-01A-12R-A32Q-07 Nchr2~45223806~KRTCAP2 intergenic "-," "KRTCAP2," chr2~chr1 45223806 155141996 6 -- 1.56071 1 1 0 1 8 TCGA-UE-A6QU-01A-12R-A32Q-07 Nchr6~144522084~TPT1 intergenic "-," "TPT1," chr6~chr13 144522084 45914882 2 +- 0.693147 1 1 0 1 34 TCGA-UE-A6QU-01A-12R-A32Q-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 10 ++ 1.886697 7 6 1 7 10 TCGA-UE-A6QU-01A-12R-A32Q-07 Nchr6~29855763~HLA-B intergenic "-," "HLA-B," chr6~chr6 29855763 31324721 4 -- 1.039721 1 0 1 1 6 TCGA-UE-A6QU-01A-12R-A32Q-07 Nchr6~29856480~HLA-B intergenic "-," "HLA-B," chr6~chr6 29856480 31324034 14 -- 2.143952 10 2 8 10 206 TCGA-UE-A6QU-01A-12R-A32Q-07 Nchr6~29856501~HLA-C intergenic "-," "HLA-C," chr6~chr6 29856501 31238923 3 -- 1.098612 3 1 2 3 548 TCGA-UE-A6QU-01A-12R-A32Q-07 Nchr9~33624991~Nchr9~33625170 intergenic "-," "-," chr9~chr9 33624991 33625170 3 -- 1.098612 2 2 0 2 6 TCGA-UE-A6QU-01A-12R-A32Q-07 NchrX~45212957~NchrX~45461542 intergenic "-," "-," chrX~chrX 45212957 45461542 3 ++ 0.636514 3 0 3 3 2 TCGA-UE-A6QU-01A-12R-A32Q-07 PDZRN3~CTD-2006M22.1 fusion "PDZRN3," "CTD-2006M22.1," chr3~chr3 73673254 73674563 131 -+ 3.009246 137 9 117 137 66 TCGA-UE-A6QU-01A-12R-A32Q-07 ROBO1~Nchr21~21101757 intergenic "ROBO1," "-," chr3~chr21 79638974 21101757 5 -+ 1.609438 2 1 1 2 6 TCGA-UE-A6QU-01A-12R-A32Q-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 3 +- 0.636514 3 0 3 3 2 TCGA-UE-A6QU-01A-12R-A32Q-07 SEC31A~Nchr8~83132299 intergenic "SEC31A," "-," chr4~chr8 83785515 83132299 7 -- 1.549826 6 5 1 6 28 TCGA-UE-A6QU-01A-12R-A32Q-07 SEC31A~Nchr8~83155006 intergenic "SEC31A," "-," chr4~chr8 83785515 83155006 10 -- 2.025326 9 6 3 9 20 TCGA-UE-A6QU-01A-12R-A32Q-07 SEC31A~Nchr8~83155050 intergenic "SEC31A," "-," chr4~chr8 83785515 83155050 2 -- 0.693147 2 0 2 2 28 TCGA-K1-A6RU-01A-11R-A32Q-07 AKAP2~AGTPBP1 fusion "AKAP2," "AGTPBP1," chr9~chr9 112811135 88327481 3 +- 0.636514 3 3 0 3 4 TCGA-K1-A6RU-01A-11R-A32Q-07 AKT2~Nchr19~57156936 intergenic "AKT2," "-," chr19~chr19 40762833 57156936 9 -+ 2.043192 9 6 3 9 8 TCGA-K1-A6RU-01A-11R-A32Q-07 APBA1~SUSD1 fusion "APBA1," "SUSD1," chr9~chr9 72071163 114804240 9 -- 2.043192 9 4 5 9 26 TCGA-K1-A6RU-01A-11R-A32Q-07 BBS9~Nchr7~33900207 intergenic "BBS9," "-," chr7~chr7 33644587 33900207 2 ++ 0.693147 2 0 2 2 4 TCGA-K1-A6RU-01A-11R-A32Q-07 C21orf70~FER fusion "C21orf70," "FER," chr21~chr5 46380083 108436097 6 ++ 1.56071 5 2 3 5 8 TCGA-K1-A6RU-01A-11R-A32Q-07 C9orf3~Nchr9~88984233 intergenic "C9orf3," "-," chr9~chr9 97686457 88984233 5 +- 0.950271 5 5 0 5 16 TCGA-K1-A6RU-01A-11R-A32Q-07 CBFA2T2~Nchr20~46013763 intergenic "CBFA2T2," "-," chr20~chr20 32199141 46013763 3 +- 1.098612 3 1 2 3 2 TCGA-K1-A6RU-01A-11R-A32Q-07 CBFA2T2~Nchr20~46081887 intergenic "CBFA2T2," "-," chr20~chr20 32199141 46081887 3 +- 0.636514 3 2 1 3 4 TCGA-K1-A6RU-01A-11R-A32Q-07 CHST3~Nchr13~55102550 intergenic "CHST3," "-," chr10~chr13 73730472 55102550 4 +- 0.693147 4 2 2 4 2 TCGA-K1-A6RU-01A-11R-A32Q-07 CORO1C~Nchr12~116953634 intergenic "CORO1C," "-," chr12~chr12 109094900 116953634 7 -+ 1.153742 7 6 1 7 10 TCGA-K1-A6RU-01A-11R-A32Q-07 CORO1C~RBFOX1 fusion "CORO1C," "RBFOX1," chr12~chr16 109094900 7568149 14 -+ 2.341994 14 11 3 14 18 TCGA-K1-A6RU-01A-11R-A32Q-07 CPSF4~RP11-762I7.5 fusion "CPSF4," "RP11-762I7.5,SARNP," chr7~chr12 99040711 56184376 2 +- 0.693147 2 1 1 2 26 TCGA-K1-A6RU-01A-11R-A32Q-07 EDF1~Nchr9~139760751 intergenic "EDF1," "-," chr9~chr9 139758307 139760751 2 +- 0.693147 2 1 1 2 52 TCGA-K1-A6RU-01A-11R-A32Q-07 EIF1~Nchr17~21163258 intergenic "EIF1," "-," chr17~chr17 39847063 21163258 4 ++ 1.386294 4 0 4 4 18 TCGA-K1-A6RU-01A-11R-A32Q-07 FAM102A~RAD23B fusion "FAM102A," "RAD23B," chr9~chr9 130742271 110081033 45 -+ 2.915209 44 33 11 44 72 TCGA-K1-A6RU-01A-11R-A32Q-07 FANCC~Nchr9~85528505 intergenic "FANCC," "-," chr9~chr9 97933361 85528505 11 -+ 2.271869 7 5 2 7 14 TCGA-K1-A6RU-01A-11R-A32Q-07 GIGYF2~EEF1B2 fusion "GIGYF2," "EEF1B2," chr2~chr2 233594854 207024743 4 ++ 1.386294 3 3 0 3 18 TCGA-K1-A6RU-01A-11R-A32Q-07 GLI2~Nchr2~121345789 intergenic "GLI2," "-," chr2~chr2 121493861 121345789 2 ++ 0.693147 2 1 1 2 6 TCGA-K1-A6RU-01A-11R-A32Q-07 GMPS~Nchr21~21646131 intergenic "GMPS," "-," chr3~chr21 155588686 21646131 2 ++ 0.693147 1 0 1 1 8 TCGA-K1-A6RU-01A-11R-A32Q-07 GPBP1~DERL2 fusion "GPBP1," "DERL2," chr5~chr17 56557109 5378109 2 +- 0.693147 2 1 1 2 12 TCGA-K1-A6RU-01A-11R-A32Q-07 GPBP1~Nchr4~4120536 intergenic "GPBP1," "-," chr5~chr4 56472227 4120536 3 ++ 1.098612 3 0 3 3 12 TCGA-K1-A6RU-01A-11R-A32Q-07 HLA-B~Nchr6~29902006 intergenic "HLA-B," "-," chr6~chr6 31323352 29902006 4 ++ 1.386294 1 1 0 1 392 TCGA-K1-A6RU-01A-11R-A32Q-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 460 -- 2.511071 422 97 324 422 130 TCGA-K1-A6RU-01A-11R-A32Q-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489804 32552102 2 -- 0.693147 1 0 1 1 654 TCGA-K1-A6RU-01A-11R-A32Q-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 278 -- 2.596033 139 40 98 139 52 TCGA-K1-A6RU-01A-11R-A32Q-07 ICAM1~Nchr19~10243682 intergenic "ICAM1," "-," chr19~chr19 10385704 10243682 5 ++ 1.332179 3 2 1 3 58 TCGA-K1-A6RU-01A-11R-A32Q-07 KDM1A~Nchr1~23274615 intergenic "KDM1A," "-," chr1~chr1 23406160 23274615 9 ++ 1.889159 7 5 2 7 66 TCGA-K1-A6RU-01A-11R-A32Q-07 KIF22~Nchr4~186040537 intergenic "KIF22," "-," chr16~chr4 29816495 186040537 7 +- 1.549826 7 3 4 7 26 TCGA-K1-A6RU-01A-11R-A32Q-07 KIF22~Nchr4~186040537 intergenic "KIF22," "-," chr16~chr4 29816347 186040537 18 +- 2.289273 17 9 8 17 22 TCGA-K1-A6RU-01A-11R-A32Q-07 NAA35~Nchr9~89382371 intergenic "NAA35," "-," chr9~chr9 88557198 89382371 28 ++ 2.582995 25 9 16 25 90 TCGA-K1-A6RU-01A-11R-A32Q-07 NEK11~Nchr3~176046681 intergenic "NEK11," "-," chr3~chr3 130799432 176046681 5 +- 1.05492 5 1 4 5 8 TCGA-K1-A6RU-01A-11R-A32Q-07 NUP188~APBA1 fusion "NUP188,RP11-101E3.5,NUP188," "APBA1," chr9~chr9 131715125 72132195 15 +- 2.211069 15 6 9 15 14 TCGA-K1-A6RU-01A-11R-A32Q-07 Nchr11~27603266~RPS25 intergenic "-," "RPS25," chr11~chr11 27603266 118888759 2 -- 0.693147 1 1 0 1 190 TCGA-K1-A6RU-01A-11R-A32Q-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 56 -+ 2.319167 30 0 30 30 34 TCGA-K1-A6RU-01A-11R-A32Q-07 Nchr12~63359160~Nchr12~63359287 intergenic "-," "-," chr12~chr12 63359160 63359287 2 -- 0.693147 1 1 0 1 16 TCGA-K1-A6RU-01A-11R-A32Q-07 Nchr12~7759647~CLTA intergenic "-," "CLTA," chr12~chr9 7759647 36204115 2 -+ 0.693147 2 0 2 2 2 TCGA-K1-A6RU-01A-11R-A32Q-07 Nchr14~106444647~Nchr14~106444858 intergenic "-," "-," chr14~chr14 106444647 106444858 7 -- 1.277034 5 0 5 5 2 TCGA-K1-A6RU-01A-11R-A32Q-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 2 ++ 0.693147 2 1 1 2 6 TCGA-K1-A6RU-01A-11R-A32Q-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151282 2 -- 0.693147 1 1 0 1 4 TCGA-K1-A6RU-01A-11R-A32Q-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 6 -- 1.56071 2 0 2 2 4 TCGA-K1-A6RU-01A-11R-A32Q-07 Nchr19~50223193~RPS9 intergenic "-," "RPS9," chr19~chr19 50223193 54710191 2 -- 0.693147 1 0 1 1 154 TCGA-K1-A6RU-01A-11R-A32Q-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 77 -+ 3.036957 64 32 32 64 400 TCGA-K1-A6RU-01A-11R-A32Q-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145013721 5 -+ 1.332179 5 2 3 5 66 TCGA-K1-A6RU-01A-11R-A32Q-07 Nchr1~171639696~Nchr1~171639868 intergenic "-," "-," chr1~chr1 171639696 171639868 2 -- 0.693147 2 0 2 2 22 TCGA-K1-A6RU-01A-11R-A32Q-07 Nchr21~9827008~Nchr21~9827114 intergenic "-," "-," chr21~chr21 9827008 9827114 2 -- 0.693147 2 2 0 2 6 TCGA-K1-A6RU-01A-11R-A32Q-07 Nchr2~177065785~Nchr2~177065899 intergenic "-," "-," chr2~chr2 177065785 177065899 3 -- 0.636514 3 0 3 3 6 TCGA-K1-A6RU-01A-11R-A32Q-07 Nchr2~177065785~Nchr2~177065905 intergenic "-," "-," chr2~chr2 177065785 177065905 4 -- 0.562335 4 0 4 4 6 TCGA-K1-A6RU-01A-11R-A32Q-07 Nchr2~177065789~Nchr2~177065905 intergenic "-," "-," chr2~chr2 177065789 177065905 3 -- 0.636514 3 0 3 3 4 TCGA-K1-A6RU-01A-11R-A32Q-07 Nchr2~177065789~Nchr2~177065920 intergenic "-," "-," chr2~chr2 177065789 177065920 2 -- 0.693147 2 0 2 2 56 TCGA-K1-A6RU-01A-11R-A32Q-07 Nchr2~177065909~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065909 177065788 3 ++ 0.636514 3 0 3 3 4 TCGA-K1-A6RU-01A-11R-A32Q-07 Nchr2~177065915~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065915 177065788 2 ++ 0.693147 2 0 2 2 14 TCGA-K1-A6RU-01A-11R-A32Q-07 Nchr3~112449699~CLCN2 intergenic "-," "CLCN2," chr3~chr3 112449699 184071210 6 -- 1.329661 6 3 3 6 14 TCGA-K1-A6RU-01A-11R-A32Q-07 Nchr3~112449699~CLCN2 intergenic "-," "CLCN2," chr3~chr3 112449699 184071583 2 -- 0.693147 2 1 1 2 16 TCGA-K1-A6RU-01A-11R-A32Q-07 Nchr6~86137263~Nchr6~86137372 intergenic "-," "-," chr6~chr6 86137263 86137372 4 -- 1.039721 1 1 0 1 2 TCGA-K1-A6RU-01A-11R-A32Q-07 Nchr9~33624991~Nchr9~33625170 intergenic "-," "-," chr9~chr9 33624991 33625170 2 -- 0.693147 2 2 0 2 20 TCGA-K1-A6RU-01A-11R-A32Q-07 Nchr9~83536578~Nchr9~92845453 intergenic "-," "-," chr9~chr9 83536578 92845453 2 ++ 0.693147 2 0 2 2 4 TCGA-K1-A6RU-01A-11R-A32Q-07 Nchr9~83536578~Nchr9~92872610 intergenic "-," "-," chr9~chr9 83536578 92872610 5 ++ 1.332179 4 0 4 4 2 TCGA-K1-A6RU-01A-11R-A32Q-07 Nchr9~98637262~FANCC intergenic "-," "FANCC," chr9~chr9 98637262 97934429 2 -- 0.693147 1 1 0 1 24 TCGA-K1-A6RU-01A-11R-A32Q-07 NchrX~6895174~NchrX~6687709 intergenic "-," "-," chrX~chrX 6895174 6687709 2 -- 0.693147 1 1 0 1 4 TCGA-K1-A6RU-01A-11R-A32Q-07 PABPC1~Nchr12~64217063 intergenic "PABPC1," "-," chr8~chr12 101719208 64217063 5 -- 0.500402 5 3 2 5 66 TCGA-K1-A6RU-01A-11R-A32Q-07 PHKB~CRISPLD2 fusion "PHKB," "CRISPLD2," chr16~chr16 47644831 84911044 3 ++ 1.098612 3 2 1 3 4 TCGA-K1-A6RU-01A-11R-A32Q-07 RELB~ACTN4 fusion "RELB," "ACTN4," chr19~chr19 45506254 39191240 4 ++ 1.039721 3 2 1 3 26 TCGA-K1-A6RU-01A-11R-A32Q-07 RMI1~LCN2 fusion "RMI1," "LCN2," chr9~chr9 86595806 130911762 2 ++ 0.693147 2 0 2 2 18 TCGA-K1-A6RU-01A-11R-A32Q-07 RMI1~LCN2 fusion "RMI1," "LCN2," chr9~chr9 86595806 130912517 9 ++ 1.889159 9 0 9 9 38 TCGA-K1-A6RU-01A-11R-A32Q-07 RMI1~LCN2 fusion "RMI1," "LCN2," chr9~chr9 86595919 130912517 2 ++ 0.693147 2 0 2 2 12 TCGA-K1-A6RU-01A-11R-A32Q-07 RMI1~LCN2 fusion "RMI1," "LCN2," chr9~chr9 86595919 130913917 2 ++ 0.693147 2 0 2 2 44 TCGA-K1-A6RU-01A-11R-A32Q-07 RMI1~LCN2 fusion "RMI1," "LCN2," chr9~chr9 86595806 130913917 12 ++ 2.094729 12 2 10 12 32 TCGA-K1-A6RU-01A-11R-A32Q-07 ROR2~RP11-151D14.1 fusion "ROR2," "RP11-151D14.1," chr9~chr9 94645540 75487147 2 -- 0.693147 2 1 1 2 2 TCGA-K1-A6RU-01A-11R-A32Q-07 RP11-216B9.6~GLE1 fusion "RP11-216B9.6," "GLE1," chr9~chr9 131314647 131301895 11 -+ 1.84622 11 11 0 11 8 TCGA-K1-A6RU-01A-11R-A32Q-07 RPS9~Nchr19~50223193 intergenic "RPS9," "-," chr19~chr19 54705392 50223193 3 ++ 0.636514 3 2 1 3 128 TCGA-K1-A6RU-01A-11R-A32Q-07 SKIV2L2~GPBP1 fusion "SKIV2L2," "GPBP1," chr5~chr5 54603975 56509901 2 ++ 0.693147 2 0 2 2 6 TCGA-K1-A6RU-01A-11R-A32Q-07 SLC25A25~Nchr9~83536449 intergenic "SLC25A25," "-," chr9~chr9 130830859 83536449 12 ++ 2.138333 6 2 4 6 2 TCGA-K1-A6RU-01A-11R-A32Q-07 SPTAN1~TBC1D13 fusion "SPTAN1," "TBC1D13," chr9~chr9 131314975 131550613 36 ++ 2.716709 31 10 21 31 60 TCGA-K1-A6RU-01A-11R-A32Q-07 SSBP4~Nchr18~12067469 intergenic "SSBP4," "-," chr19~chr18 18543693 12067469 19 ++ 0.917402 19 12 7 19 34 TCGA-K1-A6RU-01A-11R-A32Q-07 SULF2~TSHZ2 fusion "SULF2," "TSHZ2," chr20~chr20 46365447 52103683 8 -+ 1.906155 3 1 2 3 26 TCGA-K1-A6RU-01A-11R-A32Q-07 SVEP1~Nchr9~89565782 intergenic "SVEP1," "-," chr9~chr9 113341293 89565782 8 -+ 1.906155 8 0 8 8 10 TCGA-K1-A6RU-01A-11R-A32Q-07 SVEP1~TJP2 fusion "SVEP1," "TJP2," chr9~chr9 113275206 71864291 26 -+ 2.479125 24 12 12 24 68 TCGA-K1-A6RU-01A-11R-A32Q-07 TAGLN2~AC090579.1 fusion "TAGLN2," "AC090579.1," chr1~chr8 159888628 107709873 3 -+ 0.636514 3 3 0 3 146 TCGA-K1-A6RU-01A-11R-A32Q-07 TBC1D13~Nchr9~98279757 intergenic "TBC1D13," "-," chr9~chr9 131554853 98279757 2 +- 0.693147 2 0 2 2 74 TCGA-K1-A6RU-01A-11R-A32Q-07 TBC1D13~Nchr9~98279760 intergenic "TBC1D13," "-," chr9~chr9 131554853 98279760 43 +- 2.713104 40 19 21 40 76 TCGA-K1-A6RU-01A-11R-A32Q-07 TBL1XR1~Nchr3~116530552 intergenic "TBL1XR1," "-," chr3~chr3 176914909 116530552 7 -+ 1.747868 7 6 1 7 8 TCGA-K1-A6RU-01A-11R-A32Q-07 TBL1XR1~Nchr3~116535968 intergenic "TBL1XR1," "-," chr3~chr3 176914909 116535968 9 -+ 2.043192 9 8 1 9 6 TCGA-K1-A6RU-01A-11R-A32Q-07 TP53~ELL fusion "WRAP53,TP53," "ELL," chr17~chr19 7590695 18561785 17 -- 2.3947 14 7 7 14 56 TCGA-K1-A6RU-01A-11R-A32Q-07 TUBA1A~TUBA1C fusion "TUBA1A," "TUBA1C,RP11-161H23.5," chr12~chr12 49579045 49666750 3 -- 0.636514 3 0 3 3 146 TCGA-K1-A6RU-01A-11R-A32Q-07 USP16~Nchr21~34353971 intergenic "USP16," "-," chr21~chr21 30409784 34353971 3 +- 1.098612 3 2 1 3 4 TCGA-K1-A6RU-01A-11R-A32Q-07 ZER1~RP11-180I4.2 fusion "ZER1," "RP11-180I4.2," chr9~chr9 131533860 98477686 3 -+ 1.098612 3 1 2 3 4 TCGA-JV-A75J-01A-11R-A32Q-07 AC016629.2~Nchr9~2509738 intergenic "AC016629.2," "-," chr19~chr9 59086955 2509738 2 ++ 0.693147 2 2 0 2 26 TCGA-JV-A75J-01A-11R-A32Q-07 AC016629.2~Nchr9~2509738 intergenic "AC016629.2," "-," chr19~chr9 59097723 2509738 4 ++ 1.386294 4 3 1 4 10 TCGA-JV-A75J-01A-11R-A32Q-07 ADCK5~AP001476.2 fusion "ADCK5," "AP001476.2," chr8~chr21 145597796 47457530 22 ++ 2.563151 20 20 0 20 6 TCGA-JV-A75J-01A-11R-A32Q-07 ANP32B~PTMS fusion "ANP32B," "PTMS," chr9~chr12 100777657 6878784 11 ++ 1.972247 3 3 0 3 4 TCGA-JV-A75J-01A-11R-A32Q-07 ARMC9~Nchr8~112950156 intergenic "ARMC9," "-," chr2~chr8 232143171 112950156 3 ++ 1.098612 3 3 0 3 4 TCGA-JV-A75J-01A-11R-A32Q-07 BCR~Nchr22~23949229 intergenic "BCR," "-," chr22~chr22 23637342 23949229 12 ++ 1.979205 12 1 11 12 22 TCGA-JV-A75J-01A-11R-A32Q-07 BTAF1~HOGA1 fusion "BTAF1," "HOGA1," chr10~chr10 93713630 99358532 4 ++ 1.386294 4 1 3 4 20 TCGA-JV-A75J-01A-11R-A32Q-07 BTAF1~RP11-548K23.11 fusion "BTAF1," "HOGA1,RP11-548K23.11,HOGA1," chr10~chr10 93713630 99361614 5 ++ 1.609438 4 4 0 4 2 TCGA-JV-A75J-01A-11R-A32Q-07 CACYBP~Nchr2~184472861 intergenic "CACYBP," "-," chr1~chr2 174973792 184472861 3 -- 0.636514 3 3 0 3 18 TCGA-JV-A75J-01A-11R-A32Q-07 COL6A2~Nchr6~74083036 intergenic "COL6A2," "-," chr21~chr6 47542838 74083036 3 -- 1.098612 3 1 2 3 2 TCGA-JV-A75J-01A-11R-A32Q-07 CPSF4~RP11-762I7.5 fusion "CPSF4," "RP11-762I7.5,SARNP," chr7~chr12 99040711 56184376 3 +- 1.098612 2 0 2 2 26 TCGA-JV-A75J-01A-11R-A32Q-07 DGKD~Nchr10~91608851 intergenic "DGKD,AC019221.4," "-," chr2~chr10 234263320 91608851 8 +- 1.732868 6 3 3 6 16 TCGA-JV-A75J-01A-11R-A32Q-07 DMPK~Nchr19~1246661 intergenic "DMPK," "-," chr19~chr19 46282522 1246661 2 -- 0.693147 2 0 2 2 10 TCGA-JV-A75J-01A-11R-A32Q-07 EEF2~IGF2 fusion "EEF2," "IGF2,IGF2," chr19~chr11 3976496 2153235 2 -- 0.693147 2 1 1 2 6 TCGA-JV-A75J-01A-11R-A32Q-07 EIF2AK1~PHF14 fusion "EIF2AK1," "PHF14," chr7~chr7 6094177 11091239 25 -+ 2.567046 24 21 3 24 44 TCGA-JV-A75J-01A-11R-A32Q-07 FSCN1~CLIC2 fusion "FSCN1," "CLIC2," chr7~chrX 5633399 154528458 15 +- 2.488328 15 7 8 15 22 TCGA-JV-A75J-01A-11R-A32Q-07 GAPDH~Nchr4~135966678 intergenic "GAPDH," "-," chr12~chr4 6646957 135966678 3 -+ 1.098612 3 2 1 3 4 TCGA-JV-A75J-01A-11R-A32Q-07 GNA12~CUL1 fusion "GNA12," "CUL1," chr7~chr7 2834562 148427054 18 -+ 2.322188 18 4 14 18 62 TCGA-JV-A75J-01A-11R-A32Q-07 GSK3A~ZSCAN5A fusion "GSK3A," "ZSCAN5A," chr19~chr19 42744107 56786277 3 -- 0.636514 3 3 0 3 6 TCGA-JV-A75J-01A-11R-A32Q-07 IGF2~Nchr17~80202118 intergenic "IGF2,IGF2," "-," chr11~chr17 2152855 80202118 2 +- 0.693147 2 1 1 2 8 TCGA-JV-A75J-01A-11R-A32Q-07 MICAL3~RP11-259P1.1 fusion "MICAL3," "RP11-259P1.1," chr22~chr22 18484159 26640461 6 -- 0.867563 4 0 4 4 16 TCGA-JV-A75J-01A-11R-A32Q-07 NF1~RPTOR fusion "NF1," "RPTOR," chr17~chr17 29422387 78599491 26 ++ 2.428468 23 0 23 23 42 TCGA-JV-A75J-01A-11R-A32Q-07 NOM1~UVRAG fusion "NOM1," "UVRAG," chr7~chr11 156743418 75776754 12 ++ 2.253858 8 1 7 8 10 TCGA-JV-A75J-01A-11R-A32Q-07 NOM1~UVRAG fusion "NOM1," "UVRAG," chr7~chr11 156743418 75826968 2 ++ 0.693147 2 1 1 2 4 TCGA-JV-A75J-01A-11R-A32Q-07 NOP56~Nchr12~79952582 intergenic "NOP56,NOP56," "-," chr20~chr12 2637857 79952582 25 ++ 1.957077 18 0 18 18 34 TCGA-JV-A75J-01A-11R-A32Q-07 NSMCE2~COL22A1 fusion "NSMCE2," "COL22A1," chr8~chr8 126194498 139856401 13 +- 2.098147 13 8 5 13 30 TCGA-JV-A75J-01A-11R-A32Q-07 NSMCE2~EXT1 fusion "NSMCE2," "EXT1," chr8~chr8 126163519 118817132 4 +- 1.386294 3 1 2 3 8 TCGA-JV-A75J-01A-11R-A32Q-07 NUBP2~RHBDL1 fusion "NUBP2," "RHBDL1," chr16~chr16 1833037 726971 8 ++ 1.667462 6 6 0 6 12 TCGA-JV-A75J-01A-11R-A32Q-07 NUBP2~RHOT2 fusion "NUBP2," "RHOT2," chr16~chr16 1833037 722686 60 ++ 2.870015 57 57 0 57 62 TCGA-JV-A75J-01A-11R-A32Q-07 NUBP2~RHOT2 fusion "NUBP2," "RHOT2," chr16~chr16 1833507 722686 2 ++ 0.693147 2 2 0 2 10 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr11~27603266~RPS25 intergenic "-," "RPS25," chr11~chr11 27603266 118888759 9 -- 2.043192 4 3 1 4 686 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr11~47212988~RPS20 intergenic "-," "RPS20," chr11~chr8 47212988 56986943 4 -+ 1.039721 1 1 0 1 58 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr11~47213097~RPS20 intergenic "-," "RPS20," chr11~chr8 47213097 56986962 6 +- 1.56071 6 0 6 6 54 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 158 -+ 2.587755 93 0 93 93 52 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr12~104659073~Nchr12~104659181 intergenic "-," "-," chr12~chr12 104659073 104659181 4 -- 1.039721 3 3 0 3 96 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr12~104659308~Nchr12~104659246 intergenic "-," "-," chr12~chr12 104659308 104659246 3 ++ 1.098612 3 2 1 3 4 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr12~104659470~Nchr12~104659252 intergenic "-," "-," chr12~chr12 104659470 104659252 5 ++ 1.332179 4 3 1 4 328 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr12~104659470~Nchr12~104659255 intergenic "-," "-," chr12~chr12 104659470 104659255 3 ++ 1.098612 3 1 2 3 310 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr12~63359160~Nchr12~63359272 intergenic "-," "-," chr12~chr12 63359160 63359272 4 -- 1.039721 3 3 0 3 32 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr14~106444660~Nchr14~106444858 intergenic "-," "-," chr14~chr14 106444660 106444858 6 -- 1.098612 5 0 5 5 4 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr14~28125649~Nchr14~27791347 intergenic "-," "-," chr14~chr14 28125649 27791347 3 -- 1.098612 3 2 1 3 4 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr14~99439503~Nchr14~99439336 intergenic "-," "-," chr14~chr14 99439503 99439336 2 ++ 0.693147 2 0 2 2 106 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 15 ++ 2.303488 13 2 11 13 36 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 8 ++ 2.079442 8 1 7 8 18 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr17~14608784~Nchr17~14608880 intergenic "-," "-," chr17~chr17 14608784 14608880 2 -- 0.693147 2 0 2 2 26 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr17~16342992~Nchr17~16344428 intergenic "-," "-," chr17~chr17 16342992 16344428 2 +- 0.693147 2 0 2 2 90 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr17~16343527~Nchr17~16344775 intergenic "-," "-," chr17~chr17 16343527 16344775 2 +- 0.693147 2 0 2 2 132 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr17~16343567~Nchr17~16343499 intergenic "-," "-," chr17~chr17 16343567 16343499 2 ++ 0.693147 2 2 0 2 2 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr18~37115422~Nchr18~36788003 intergenic "-," "-," chr18~chr18 37115422 36788003 2 -- 0.693147 1 1 0 1 4 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr18~37115422~Nchr18~36788753 intergenic "-," "-," chr18~chr18 37115422 36788753 4 -- 1.386294 3 1 2 3 16 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr18~37331293~Nchr18~37115579 intergenic "-," "-," chr18~chr18 37331293 37115579 11 -- 2.098274 5 4 1 5 30 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 10 -- 2.163956 8 1 7 8 6 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 2 ++ 0.693147 1 0 1 1 66 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr19~50223193~RPS9 intergenic "-," "RPS9," chr19~chr19 50223193 54710191 4 -- 1.386294 4 0 4 4 328 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr1~173834408~Nchr15~26890685 intergenic "-," "-," chr1~chr15 173834408 26890685 3 -- 1.098612 2 2 0 2 66 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr1~192685469~Nchr1~192685560 intergenic "-," "-," chr1~chr1 192685469 192685560 3 -- 1.098612 3 3 0 3 10 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr1~40599003~OAZ1 intergenic "-," "OAZ1," chr1~chr19 40599003 2273108 2 +- 0.693147 2 0 2 2 4 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr1~51623362~CFL1 intergenic "-," "CFL1," chr1~chr11 51623362 65622526 6 ++ 1.242453 5 0 5 5 2 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr1~99473933~RPL5 intergenic "-," "RPL5," chr1~chr1 99473933 93306108 2 ++ 0.693147 2 2 0 2 24 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr1~99473933~RPL5 intergenic "-," "RPL5," chr1~chr1 99473933 93306148 4 ++ 1.386294 3 3 0 3 16 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr1~99473933~RPL5 intergenic "-," "RPL5," chr1~chr1 99473933 93306150 9 ++ 2.043192 9 9 0 9 16 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr22~26611357~PEX26 intergenic "-," "TUBA8,PEX26," chr22~chr22 26611357 18604246 3 -+ 1.098612 1 0 1 1 4 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr2~122702023~Nchr2~122978395 intergenic "-," "-," chr2~chr2 122702023 122978395 5 ++ 1.332179 2 1 1 2 4 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr2~122702023~Nchr2~123150539 intergenic "-," "-," chr2~chr2 122702023 123150539 2 ++ 0.693147 2 1 1 2 8 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr2~122702023~Nchr2~123290427 intergenic "-," "-," chr2~chr2 122702023 123290427 3 ++ 0.636514 2 2 0 2 2 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr2~177065789~Nchr2~177065905 intergenic "-," "-," chr2~chr2 177065789 177065905 3 -- 0.636514 3 0 3 3 12 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr2~177065915~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065915 177065788 9 ++ 1.522955 9 0 9 9 38 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr4~188426446~Nchr4~188187476 intergenic "-," "-," chr4~chr4 188426446 188187476 6 -- 1.56071 4 1 3 4 22 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr4~88814820~Nchr4~88814939 intergenic "-," "-," chr4~chr4 88814820 88814939 12 -- 1.632631 12 12 0 12 2 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr5~93018536~NPM1 intergenic "-," "NPM1," chr5~chr5 93018536 170837597 4 -- 1.386294 4 4 0 4 10 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 2 -- 0.693147 2 2 0 2 20 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr6~113903020~Nchr6~113902892 intergenic "-," "-," chr6~chr6 113903020 113902892 7 ++ 0.796312 5 5 0 5 2 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 25 ++ 2.098573 24 20 4 24 32 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr7~66071892~Nchr7~66071794 intergenic "-," "-," chr7~chr7 66071892 66071794 4 ++ 1.386294 2 0 2 2 2 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr8~129001537~Nchr8~112105727 intergenic "-," "-," chr8~chr8 129001537 112105727 15 +- 1.93381 12 6 6 12 20 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr8~129022690~Nchr8~112105727 intergenic "-," "-," chr8~chr8 129022690 112105727 4 +- 1.386294 4 1 3 4 8 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr8~129022690~RP11-946L20.4 intergenic "-," "RP11-946L20.4," chr8~chr8 129022690 112125749 3 +- 1.098612 3 1 2 3 30 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr8~129022690~RP11-946L20.4 intergenic "-," "RP11-946L20.4," chr8~chr8 129022690 112128829 6 +- 1.242453 6 2 4 6 44 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr8~129045105~Nchr8~112105727 intergenic "-," "-," chr8~chr8 129045105 112105727 4 +- 1.386294 4 1 3 4 6 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr8~129045105~RP11-946L20.4 intergenic "-," "RP11-946L20.4," chr8~chr8 129045105 112128829 2 +- 0.693147 2 1 1 2 12 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr8~142038615~PTP4A3 intergenic "-," "PTP4A3," chr8~chr8 142038615 142418261 3 -- 1.098612 1 1 0 1 18 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr8~145644656~MCM3AP intergenic "-," "MCM3AP," chr8~chr21 145644656 47700051 3 +- 1.098612 3 2 1 3 4 TCGA-JV-A75J-01A-11R-A32Q-07 Nchr9~19200532~RPS6 intergenic "-," "RPS6," chr9~chr9 19200532 19378478 2 -- 0.693147 1 0 1 1 210 TCGA-JV-A75J-01A-11R-A32Q-07 NchrX~7897454~NchrX~8196376 intergenic "-," "-," chrX~chrX 7897454 8196376 4 ++ 1.039721 1 1 0 1 2 TCGA-JV-A75J-01A-11R-A32Q-07 OAZ2~Nchr15~64995277 intergenic "OAZ2," "-," chr15~chr15 64983707 64995277 2 -- 0.693147 2 2 0 2 6 TCGA-JV-A75J-01A-11R-A32Q-07 P4HB~Nchr19~59118814 intergenic "P4HB," "-," chr17~chr19 79816371 59118814 10 -- 1.834372 10 7 3 10 32 TCGA-JV-A75J-01A-11R-A32Q-07 P4HB~Nchr19~59118814 intergenic "P4HB," "-," chr17~chr19 79817057 59118814 7 -- 1.549826 7 6 1 7 16 TCGA-JV-A75J-01A-11R-A32Q-07 PANK1~CRYBB1 fusion "PANK1," "CRYBB1," chr10~chr22 91404357 27008154 43 -- 2.856257 41 7 34 41 46 TCGA-JV-A75J-01A-11R-A32Q-07 PANK1~CRYBB1 fusion "PANK1," "CRYBB1," chr10~chr22 91404357 27012302 7 -- 1.747868 7 2 5 7 6 TCGA-JV-A75J-01A-11R-A32Q-07 PANK1~Nchr22~27028497 intergenic "PANK1," "-," chr10~chr22 91404357 27028497 57 -- 2.948728 49 27 22 49 72 TCGA-JV-A75J-01A-11R-A32Q-07 PARD3B~Nchr10~130586992 intergenic "PARD3B," "-," chr2~chr10 206364755 130586992 13 +- 2.031759 12 9 3 12 42 TCGA-JV-A75J-01A-11R-A32Q-07 PCNT~NSMCE2 fusion "PCNT," "NSMCE2," chr21~chr8 47769734 126163413 6 ++ 1.56071 5 5 0 5 6 TCGA-JV-A75J-01A-11R-A32Q-07 PCNT~NSMCE2 fusion "PCNT," "NSMCE2," chr21~chr8 47771454 126163413 7 ++ 1.94591 5 3 2 5 6 TCGA-JV-A75J-01A-11R-A32Q-07 PNKP~Nchr9~10847169 intergenic "PNKP," "-," chr19~chr9 50370311 10847169 3 -- 1.098612 3 3 0 3 2 TCGA-JV-A75J-01A-11R-A32Q-07 POLE4~Nchr2~75503636 intergenic "POLE4," "-," chr2~chr2 75187273 75503636 4 ++ 1.039721 3 3 0 3 14 TCGA-JV-A75J-01A-11R-A32Q-07 PRMT2~Nchr8~127125325 intergenic "PRMT2," "-," chr21~chr8 48064400 127125325 8 +- 2.079442 8 3 5 8 8 TCGA-JV-A75J-01A-11R-A32Q-07 PTP4A3~Nchr8~142038615 intergenic "PTP4A3," "-," chr8~chr8 142425696 142038615 4 ++ 0.693147 4 4 0 4 4 TCGA-JV-A75J-01A-11R-A32Q-07 RP11-108M21.1~RP11-445P19.1 fusion "RP11-108M21.1," "RP11-445P19.1," chr1~chr1 187062078 187412760 4 ++ 1.039721 3 3 0 3 4 TCGA-JV-A75J-01A-11R-A32Q-07 RP11-123O10.4~GRIP1 fusion "RP11-123O10.4," "GRIP1," chr12~chr12 67462830 66990707 2 -- 0.693147 1 0 1 1 6 TCGA-JV-A75J-01A-11R-A32Q-07 RP11-946L20.2~Nchr10~130620350 intergenic "RP11-946L20.2," "-," chr8~chr10 112015643 130620350 4 -- 1.039721 2 1 1 2 2 TCGA-JV-A75J-01A-11R-A32Q-07 RP5-837I24.4~Nchr1~101722159 intergenic "RP5-837I24.4," "-," chr1~chr1 82061888 101722159 4 -- 1.039721 3 0 3 3 2 TCGA-JV-A75J-01A-11R-A32Q-07 RPL27A~Nchr6~153603718 intergenic "RPL27A," "-," chr11~chr6 8707239 153603718 3 ++ 1.098612 2 2 0 2 300 TCGA-JV-A75J-01A-11R-A32Q-07 RPL5~Nchr1~99473933 intergenic "RPL5," "-," chr1~chr1 93303131 99473933 4 -- 1.039721 4 4 0 4 24 TCGA-JV-A75J-01A-11R-A32Q-07 RPLP1~Nchr2~177065822 intergenic "RPLP1," "-," chr15~chr2 69747526 177065822 2 ++ 0.693147 2 2 0 2 980 TCGA-JV-A75J-01A-11R-A32Q-07 RPS19~Nchr20~18485478 intergenic "RPS19," "-," chr19~chr20 42364346 18485478 2 -+ 0.693147 1 1 0 1 78 TCGA-JV-A75J-01A-11R-A32Q-07 RPS3~Nchr3~183867573 intergenic "RPS3," "-," chr11~chr3 75110602 183867573 2 -+ 0.693147 2 2 0 2 26 TCGA-JV-A75J-01A-11R-A32Q-07 RPS8~Nchr5~33162272 intergenic "RPS8," "-," chr1~chr5 45241145 33162272 2 ++ 0.693147 2 0 2 2 2 TCGA-JV-A75J-01A-11R-A32Q-07 RSPO1~HNRNPM fusion "RSPO1," "HNRNPM," chr1~chr19 38077349 8553622 2 -+ 0.693147 1 0 1 1 6 TCGA-JV-A75J-01A-11R-A32Q-07 SCRIB~FER1L6 fusion "SCRIB," "FER1L6," chr8~chr8 144891721 125094529 4 -+ 1.039721 3 3 0 3 10 TCGA-JV-A75J-01A-11R-A32Q-07 SLC7A1~AKNA fusion "SLC7A1," "AKNA," chr13~chr9 30169553 117143726 4 -- 1.039721 4 0 4 4 16 TCGA-JV-A75J-01A-11R-A32Q-07 SSBP4~Nchr18~12067469 intergenic "SSBP4," "-," chr19~chr18 18543693 12067469 9 ++ 0.683739 9 9 0 9 14 TCGA-JV-A75J-01A-11R-A32Q-07 UBA2~Nchr19~57162746 intergenic "UBA2," "-," chr19~chr19 34955036 57162746 5 ++ 1.332179 5 1 4 5 20 TCGA-JV-A75J-01A-11R-A32Q-07 UBA2~Nchr19~57165262 intergenic "UBA2," "-," chr19~chr19 34955036 57165262 12 ++ 2.138397 13 8 4 13 28 TCGA-JV-A75J-01A-11R-A32Q-07 UBA2~Nchr19~57166471 intergenic "UBA2," "-," chr19~chr19 34955036 57166471 45 ++ 2.67974 40 6 34 40 268 TCGA-JV-A75J-01A-11R-A32Q-07 ZFP14~Nchr9~12246645 intergenic "ZFP14," "-," chr19~chr9 36858786 12246645 31 -+ 2.648732 28 19 9 28 94 TCGA-JV-A75J-01A-11R-A32Q-07 ZNF507~Nchr9~23589008 intergenic "ZNF507," "-," chr19~chr9 32851524 23589008 24 ++ 2.358854 22 9 13 22 76 TCGA-JV-A75J-01A-11R-A32Q-07 ZNF667~Nchr9~11920975 intergenic "ZNF667," "-," chr19~chr9 56969524 11920975 5 -- 1.609438 5 2 3 5 10 TCGA-JV-A75J-01A-11R-A32Q-07 ZNF667~Nchr9~11950578 intergenic "ZNF667," "-," chr19~chr9 56969524 11950578 27 -- 2.448155 22 2 20 22 32 TCGA-JV-A75J-01A-11R-A32Q-07 ZNF667~Nchr9~11951383 intergenic "ZNF667," "-," chr19~chr9 56969524 11951383 4 -- 1.386294 4 2 2 4 30 TCGA-DX-A6B9-01A-12R-A32Q-07 ACTG2~ACTB fusion "ACTG2," "ACTB," chr2~chr7 74141998 5567816 2 +- 0.693147 2 2 0 2 18 TCGA-DX-A6B9-01A-12R-A32Q-07 ACTN4~Nchr4~117519476 intergenic "ACTN4," "-," chr19~chr4 39208704 117519476 3 -+ 1.098612 3 3 0 3 14 TCGA-DX-A6B9-01A-12R-A32Q-07 AGAP1~Nchr2~240355303 intergenic "AGAP1," "-," chr2~chr2 236403493 240355303 17 +- 2.588573 17 6 11 17 26 TCGA-DX-A6B9-01A-12R-A32Q-07 AGAP1~Nchr2~240355303 intergenic "AGAP1," "-," chr2~chr2 236579701 240355303 37 +- 2.608965 30 2 28 30 46 TCGA-DX-A6B9-01A-12R-A32Q-07 AP1M1~PYCR1 fusion "AP1M1," "PYCR1," chr19~chr17 16319988 79894069 3 +- 1.098612 2 1 1 2 10 TCGA-DX-A6B9-01A-12R-A32Q-07 BRI3BP~Nchr12~125375349 intergenic "BRI3BP," "-," chr12~chr12 125478549 125375349 4 +- 1.386294 2 1 1 2 2 TCGA-DX-A6B9-01A-12R-A32Q-07 CACYBP~Nchr2~184472861 intergenic "CACYBP," "-," chr1~chr2 174973792 184472861 3 -- 1.098612 3 3 0 3 4 TCGA-DX-A6B9-01A-12R-A32Q-07 CHFR~ZNF565 fusion "CHFR," "ZNF565," chr12~chr19 133429572 36686058 2 -- 0.693147 2 0 2 2 26 TCGA-DX-A6B9-01A-12R-A32Q-07 CHFR~ZNF565 fusion "CHFR," "ZNF565," chr12~chr19 133430017 36686058 2 -- 0.693147 2 1 1 2 4 TCGA-DX-A6B9-01A-12R-A32Q-07 CPSF6~C9orf3 fusion "CPSF6," "C9orf3," chr12~chr9 69656342 97848964 2 ++ 0.693147 2 0 2 2 6 TCGA-DX-A6B9-01A-12R-A32Q-07 DES~MYL9 fusion "DES,AC053503.6," "MYL9," chr2~chr20 220290839 35177798 4 ++ 1.386294 1 1 0 1 16 TCGA-DX-A6B9-01A-12R-A32Q-07 DOT1L~PSG11 fusion "DOT1L," "PSG11," chr19~chr19 2164264 43523200 81 +- 2.936625 70 6 64 70 78 TCGA-DX-A6B9-01A-12R-A32Q-07 DOT1L~PSG11 fusion "DOT1L," "PSG11," chr19~chr19 2164264 43524333 4 +- 1.386294 4 0 4 4 90 TCGA-DX-A6B9-01A-12R-A32Q-07 HS3ST1~Nchr4~10985134 intergenic "HS3ST1," "-," chr4~chr4 11430323 10985134 2 -- 0.693147 2 2 0 2 6 TCGA-DX-A6B9-01A-12R-A32Q-07 JUP~MYL9 fusion "JUP,KRT17," "MYL9," chr17~chr20 39777033 35173372 5 -+ 1.332179 4 3 1 4 2 TCGA-DX-A6B9-01A-12R-A32Q-07 KRT14~MYH11 fusion "KRT14," "MYH11," chr17~chr16 39740509 15835712 3 -- 1.098612 3 1 2 3 6 TCGA-DX-A6B9-01A-12R-A32Q-07 MYH11~MYL9 fusion "MYH11," "MYL9," chr16~chr20 15826547 35177926 9 -+ 1.310784 8 6 2 8 2 TCGA-DX-A6B9-01A-12R-A32Q-07 MYH11~TPM2 fusion "MYH11," "TPM2," chr16~chr9 15820809 35685495 2 -- 0.693147 2 1 1 2 2 TCGA-DX-A6B9-01A-12R-A32Q-07 MYL9~MYLK fusion "MYL9," "MYLK," chr20~chr3 35178076 123332543 2 +- 0.693147 2 0 2 2 10 TCGA-DX-A6B9-01A-12R-A32Q-07 NOP56~Nchr12~79952582 intergenic "NOP56,NOP56," "-," chr20~chr12 2637857 79952582 3 ++ 1.098612 1 0 1 1 2 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 58 -+ 2.240407 36 0 36 36 42 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr13~110941841~Nchr2~229705466 intergenic "-," "-," chr13~chr2 110941841 229705466 3 -+ 0.636514 3 3 0 3 8 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr15~34665880~ACTG2 intergenic "-," "ACTG2," chr15~chr2 34665880 74146601 11 -- 1.720193 11 0 11 11 2 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr15~98800808~Nchr15~98589968 intergenic "-," "-," chr15~chr15 98800808 98589968 5 -- 0.950271 3 0 3 3 6 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr16~83829237~Nchr16~83829353 intergenic "-," "-," chr16~chr16 83829237 83829353 2 -- 0.693147 2 2 0 2 14 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr16~83829237~Nchr16~83829362 intergenic "-," "-," chr16~chr16 83829237 83829362 2 -- 0.693147 2 2 0 2 26 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 7 ++ 1.475076 7 1 6 7 6 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 5 ++ 1.609438 4 0 4 4 12 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr17~16342937~Nchr17~16343555 intergenic "-," "-," chr17~chr17 16342937 16343555 2 -- 0.693147 2 2 0 2 4 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr17~26794951~NSF intergenic "-," "NSF," chr17~chr17 26794951 44799487 2 -- 0.693147 2 0 2 2 122 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr17~28895931~JUP intergenic "-," "JUP,KRT17," chr17~chr17 28895931 39777987 3 -- 1.098612 3 0 3 3 88 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr1~171639696~Nchr1~171639868 intergenic "-," "-," chr1~chr1 171639696 171639868 5 -- 1.332179 3 1 2 3 22 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr1~171639784~Nchr1~171639676 intergenic "-," "-," chr1~chr1 171639784 171639676 3 ++ 1.098612 3 1 2 3 16 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr1~192685469~Nchr1~192685560 intergenic "-," "-," chr1~chr1 192685469 192685560 3 -- 0.636514 3 3 0 3 6 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr1~208995515~Nchr1~209237318 intergenic "-," "-," chr1~chr1 208995515 209237318 16 ++ 2.512659 14 13 1 14 14 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr1~567199~Nchr1~567325 intergenic "-," "-," chr1~chr1 567199 567325 3 -- 0.636514 1 1 0 1 98 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr1~569174~DES intergenic "-," "DES," chr1~chr2 569174 220291284 4 -+ 1.039721 4 4 0 4 4 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr1~569174~MYH11 intergenic "-," "MYH11," chr1~chr16 569174 15820815 3 -- 0.636514 3 3 0 3 4 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr2~177065789~Nchr2~177065913 intergenic "-," "-," chr2~chr2 177065789 177065913 4 -- 1.039721 4 0 4 4 8 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr2~177065909~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065909 177065788 2 ++ 0.693147 2 0 2 2 6 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr2~177065915~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065915 177065788 2 ++ 0.693147 2 0 2 2 12 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr2~177065929~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065929 177065788 4 ++ 1.039721 4 0 4 4 138 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr3~186617983~RPS20 intergenic "-," "RPS20," chr3~chr8 186617983 56986962 3 -- 1.098612 3 2 1 3 216 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr6~142221460~Nchr6~142193616 intergenic "-," "-," chr6~chr6 142221460 142193616 4 -+ 1.386294 2 2 0 2 6 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr6~144522084~TPT1 intergenic "-," "TPT1," chr6~chr13 144522084 45914858 4 +- 1.386294 3 3 0 3 34 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr6~166401017~Nchr6~166195411 intergenic "-," "-," chr6~chr6 166401017 166195411 9 -- 2.043192 9 6 3 9 12 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr7~12134279~THSD7A intergenic "-," "THSD7A," chr7~chr7 12134279 11676588 5 -- 1.332179 4 0 4 4 2 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr7~140912504~Nchr7~141137408 intergenic "-," "-," chr7~chr7 140912504 141137408 5 ++ 1.332179 1 0 1 1 2 TCGA-DX-A6B9-01A-12R-A32Q-07 Nchr8~142365298~Nchr8~142365427 intergenic "-," "-," chr8~chr8 142365298 142365427 4 -- 1.039721 4 0 4 4 2 TCGA-DX-A6B9-01A-12R-A32Q-07 PCSK7~DES fusion "TAGLN,PCSK7,TAGLN," "DES,AC053503.6," chr11~chr2 117075249 220290807 2 -- 0.693147 2 1 1 2 22 TCGA-DX-A6B9-01A-12R-A32Q-07 PCSK7~DES fusion "TAGLN,PCSK7,TAGLN," "DES,AC053503.6," chr11~chr2 117075283 220290889 2 -- 0.693147 2 0 2 2 20 TCGA-DX-A6B9-01A-12R-A32Q-07 PCSK7~MYH11 fusion "TAGLN,PCSK7,TAGLN," "MYH11," chr11~chr16 117075146 15797901 3 -- 0.636514 3 0 3 3 6 TCGA-DX-A6B9-01A-12R-A32Q-07 PCSK7~MYH11 fusion "TAGLN,PCSK7,TAGLN," "MYH11," chr11~chr16 117075242 15812228 2 -- 0.693147 2 1 1 2 14 TCGA-DX-A6B9-01A-12R-A32Q-07 PRR12~Nchr19~50135315 intergenic "PRR12," "-," chr19~chr19 50105175 50135315 3 +- 1.098612 1 1 0 1 16 TCGA-DX-A6B9-01A-12R-A32Q-07 PYCR1~BRI3BP fusion "PYCR1," "BRI3BP," chr17~chr12 79894624 125497080 5 -+ 1.332179 4 2 2 4 12 TCGA-DX-A6B9-01A-12R-A32Q-07 RP11-123O10.4~GRIP1 fusion "RP11-123O10.4," "GRIP1," chr12~chr12 67462830 66990707 5 -- 1.609438 5 0 5 5 2 TCGA-DX-A6B9-01A-12R-A32Q-07 SEPT9~Nchr17~273271 intergenic "SEPT9," "-," chr17~chr17 75303279 273271 3 ++ 1.098612 3 3 0 3 6 TCGA-DX-A6B9-01A-12R-A32Q-07 SRSF4~Nchr17~48385442 intergenic "SRSF4," "-," chr1~chr17 29508158 48385442 4 -- 1.386294 4 2 2 4 6 TCGA-DX-A6B9-01A-12R-A32Q-07 SSBP4~Nchr18~12067469 intergenic "SSBP4," "-," chr19~chr18 18543693 12067469 3 ++ 0.636514 3 2 1 3 30 TCGA-DX-A6B9-01A-12R-A32Q-07 STARD5~MYL9 fusion "STARD5," "MYL9," chr15~chr20 81615971 35173396 5 -+ 1.332179 3 3 0 3 6 TCGA-DX-A6B9-01A-12R-A32Q-07 TPM1~MYH11 fusion "TPM1," "MYH11," chr15~chr16 63349297 15835658 2 +- 0.693147 2 2 0 2 2 TCGA-DX-A6B9-01A-12R-A32Q-07 TPM1~RHOA fusion "TPM1," "RHOA," chr15~chr3 63349317 49397718 2 +- 0.693147 2 1 1 2 2 TCGA-DX-A6B9-01A-12R-A32Q-07 TPM2~ACTG1 fusion "TPM2," "ACTG1," chr9~chr17 35685061 79478652 10 -- 2.025326 10 4 6 10 40 TCGA-DX-A6B9-01A-12R-A32Q-07 ZFP82~Nchr18~26895396 intergenic "ZFP82," "-," chr19~chr18 36909394 26895396 3 -+ 1.098612 3 1 2 3 2 TCGA-DX-A6B9-01A-12R-A32Q-07 ZNF793~Nchr19~34491303 intergenic "ZNF793," "-," chr19~chr19 37999305 34491303 11 +- 2.271869 11 5 6 11 20 TCGA-DX-A6B9-01A-12R-A32Q-07 ZNF793~Nchr19~34491303 intergenic "ZNF793," "-," chr19~chr19 38011214 34491303 11 +- 2.271869 10 6 4 10 42 TCGA-QQ-A5VC-01A-31R-A32Q-07 AC007319.1~Nchr2~188122063 intergenic "AC007319.1," "-," chr2~chr2 187868092 188122063 3 ++ 1.098612 2 2 0 2 4 TCGA-QQ-A5VC-01A-31R-A32Q-07 AC073130.3~TES fusion "AC073130.3," "TES," chr7~chr7 115967886 115897348 2 -+ 0.693147 2 2 0 2 6 TCGA-QQ-A5VC-01A-31R-A32Q-07 AFF1~C4orf36 fusion "AFF1," "C4orf36," chr4~chr4 87869723 87812746 3 +- 1.098612 3 2 1 3 4 TCGA-QQ-A5VC-01A-31R-A32Q-07 APP~Nchr21~28551567 intergenic "APP," "-," chr21~chr21 27326904 28551567 45 -- 2.459124 38 18 20 38 146 TCGA-QQ-A5VC-01A-31R-A32Q-07 ATP2B1~Nchr12~90255287 intergenic "ATP2B1," "-," chr12~chr12 90004970 90255287 2 -- 0.693147 2 1 1 2 10 TCGA-QQ-A5VC-01A-31R-A32Q-07 ATP2B1~Nchr12~90256215 intergenic "ATP2B1," "-," chr12~chr12 90004970 90256215 2 -- 0.693147 2 1 1 2 2 TCGA-QQ-A5VC-01A-31R-A32Q-07 ATP2B1~Nchr12~90278028 intergenic "ATP2B1," "-," chr12~chr12 90004970 90278028 7 -- 1.747868 6 2 4 6 36 TCGA-QQ-A5VC-01A-31R-A32Q-07 ATP2B1~Nchr12~90280373 intergenic "ATP2B1," "-," chr12~chr12 90004970 90280373 6 -- 1.791759 5 4 1 5 4 TCGA-QQ-A5VC-01A-31R-A32Q-07 C15orf57~CBX3 fusion "C15orf57," "CBX3," chr15~chr7 40854971 26241383 2 -+ 0.693147 2 1 1 2 20 TCGA-QQ-A5VC-01A-31R-A32Q-07 C2CD3~RP11-657K20.2 fusion "C2CD3," "RP11-657K20.2," chr11~chr11 73850650 88255970 2 -+ 0.693147 2 1 1 2 32 TCGA-QQ-A5VC-01A-31R-A32Q-07 C2CD3~RP11-657K20.2 fusion "C2CD3," "RP11-657K20.2," chr11~chr11 73850650 88256059 19 -+ 2.552085 18 8 10 18 30 TCGA-QQ-A5VC-01A-31R-A32Q-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 4 +- 1.039721 4 2 2 4 20 TCGA-QQ-A5VC-01A-31R-A32Q-07 EPB41L2~Nchr6~164829349 intergenic "EPB41L2," "-," chr6~chr6 131206236 164829349 12 -- 2.253858 12 5 7 12 42 TCGA-QQ-A5VC-01A-31R-A32Q-07 EPB41L2~Nchr6~164882846 intergenic "EPB41L2," "-," chr6~chr6 131206236 164882846 24 -- 2.31162 23 20 3 23 58 TCGA-QQ-A5VC-01A-31R-A32Q-07 EPB41L2~Nchr6~164883056 intergenic "EPB41L2," "-," chr6~chr6 131206236 164883056 4 -- 1.039721 4 2 2 4 48 TCGA-QQ-A5VC-01A-31R-A32Q-07 ERC1~MRPS9 fusion "ERC1," "MRPS9," chr12~chr2 1481143 105716128 50 ++ 2.749056 40 9 31 40 190 TCGA-QQ-A5VC-01A-31R-A32Q-07 HBG2~HBE1 fusion "HBG2,AC104389.28," "HBE1," chr11~chr11 5526581 5291386 4 -- 1.386294 3 1 2 3 128 TCGA-QQ-A5VC-01A-31R-A32Q-07 HBG2~HBE1 fusion "HBG2,AC104389.28," "HBE1," chr11~chr11 5526581 5303181 3 -- 1.098612 3 2 1 3 26 TCGA-QQ-A5VC-01A-31R-A32Q-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 100 -- 2.143393 100 100 0 100 66 TCGA-QQ-A5VC-01A-31R-A32Q-07 HSPA13~Nchr21~19106342 intergenic "HSPA13," "-," chr21~chr21 15747973 19106342 16 -+ 2.187322 16 4 12 16 30 TCGA-QQ-A5VC-01A-31R-A32Q-07 HSPA13~Nchr21~19127576 intergenic "HSPA13," "-," chr21~chr21 15747973 19127576 3 -+ 0.636514 2 2 0 2 6 TCGA-QQ-A5VC-01A-31R-A32Q-07 KIAA0020~KCNV2 fusion "KIAA0020," "KCNV2," chr9~chr9 2804257 2729446 3 -+ 1.098612 3 0 3 3 10 TCGA-QQ-A5VC-01A-31R-A32Q-07 KIAA0020~KCNV2 fusion "KIAA0020," "KCNV2," chr9~chr9 2804322 2729446 3 -+ 1.098612 3 2 1 3 10 TCGA-QQ-A5VC-01A-31R-A32Q-07 KIAA0556~Nchr4~15305567 intergenic "KIAA0556," "-," chr16~chr4 27585277 15305567 4 ++ 1.386294 4 0 4 4 36 TCGA-QQ-A5VC-01A-31R-A32Q-07 MKRN3~Nchr15~23726817 intergenic "MKRN3," "-," chr15~chr15 23811234 23726817 4 ++ 1.386294 4 2 2 4 12 TCGA-QQ-A5VC-01A-31R-A32Q-07 MKRN3~Nchr15~23726817 intergenic "MKRN3," "-," chr15~chr15 23812131 23726817 4 ++ 1.039721 4 3 1 4 6 TCGA-QQ-A5VC-01A-31R-A32Q-07 MYH8~Nchr17~10511671 intergenic "MYH8," "-," chr17~chr17 10309555 10511671 2 ++ 0.693147 1 0 1 1 6 TCGA-QQ-A5VC-01A-31R-A32Q-07 NARS2~CLNS1A fusion "NARS2," "CLNS1A," chr11~chr11 78239888 77340944 3 -- 0.636514 3 2 1 3 4 TCGA-QQ-A5VC-01A-31R-A32Q-07 NARS2~RSF1 fusion "NARS2," "RSF1," chr11~chr11 78239888 77378536 2 -- 0.693147 2 2 0 2 10 TCGA-QQ-A5VC-01A-31R-A32Q-07 NCRNA00238~Nchr14~66724179 intergenic "NCRNA00238," "-," chr14~chr14 66962980 66724179 6 -- 1.791759 6 4 2 6 16 TCGA-QQ-A5VC-01A-31R-A32Q-07 NEK7~SMYD3 fusion "NEK7," "SMYD3," chr1~chr1 198201767 246093239 19 +- 2.40616 12 0 12 12 10 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr10~28948146~TPRKB intergenic "-," "TPRKB," chr10~chr2 28948146 73957854 3 ++ 1.098612 2 0 2 2 22 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 76 -+ 2.268921 41 0 41 41 26 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr11~89984485~Nchr11~90279922 intergenic "-," "-," chr11~chr11 89984485 90279922 8 ++ 1.732868 6 2 4 6 70 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr11~90280063~Nchr11~90578048 intergenic "-," "-," chr11~chr11 90280063 90578048 9 ++ 1.889159 4 2 2 4 24 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr11~90280063~Nchr11~90585784 intergenic "-," "-," chr11~chr11 90280063 90585784 2 ++ 0.693147 2 1 1 2 4 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr12~102709268~Nchr12~103083884 intergenic "-," "-," chr12~chr12 102709268 103083884 4 ++ 1.386294 1 1 0 1 8 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr12~43243319~Nchr12~43446586 intergenic "-," "-," chr12~chr12 43243319 43446586 8 ++ 1.906155 8 3 5 8 18 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr12~43243319~Nchr12~43537825 intergenic "-," "-," chr12~chr12 43243319 43537825 4 ++ 1.386294 2 1 1 2 12 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr12~46965195~Nchr12~47270358 intergenic "-," "-," chr12~chr12 46965195 47270358 4 ++ 1.386294 4 1 3 4 14 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr12~74544782~Nchr12~74336041 intergenic "-," "-," chr12~chr12 74544782 74336041 13 -- 2.311423 5 3 2 5 6 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr14~25820746~Nchr14~26077603 intergenic "-," "-," chr14~chr14 25820746 26077603 6 ++ 1.56071 1 1 0 1 6 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr14~26077687~Nchr14~26390312 intergenic "-," "-," chr14~chr14 26077687 26390312 2 ++ 0.693147 1 0 1 1 4 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr14~26387566~Nchr14~26239153 intergenic "-," "-," chr14~chr14 26387566 26239153 5 ++ 1.332179 1 0 1 1 26 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr14~28125544~Nchr14~27791347 intergenic "-," "-," chr14~chr14 28125544 27791347 7 -- 1.277034 4 1 3 4 28 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr14~28125649~Nchr14~27791347 intergenic "-," "-," chr14~chr14 28125649 27791347 3 -- 1.098612 2 1 1 2 14 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr14~28314387~Nchr14~27791347 intergenic "-," "-," chr14~chr14 28314387 27791347 2 -- 0.693147 2 0 2 2 4 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr14~62632983~Nchr14~62970759 intergenic "-," "-," chr14~chr14 62632983 62970759 2 ++ 0.693147 2 2 0 2 4 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr18~42153293~Nchr18~41906447 intergenic "-," "-," chr18~chr18 42153293 41906447 2 -- 0.693147 2 2 0 2 6 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr18~53507302~AC006305.1 intergenic "-," "AC006305.1," chr18~chr18 53507302 53717311 3 ++ 1.098612 3 1 2 3 10 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 111 -+ 3.064465 104 45 58 104 624 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr1~144543834~Nchr1~149204451 intergenic "-," "-," chr1~chr1 144543834 149204451 6 -+ 1.791759 3 2 1 3 6 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr1~168349020~XCL1 intergenic "-," "XCL1," chr1~chr1 168349020 168549301 2 ++ 0.693147 2 1 1 2 10 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 3 ++ 1.098612 3 2 1 3 2 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr2~108266532~AC096669.2 intergenic "-," "AC096669.2," chr2~chr2 108266532 108033239 2 -- 0.693147 2 1 1 2 4 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr2~174398067~Nchr2~174626307 intergenic "-," "-," chr2~chr2 174398067 174626307 3 ++ 1.098612 3 1 2 3 20 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr2~174398067~Nchr2~174675806 intergenic "-," "-," chr2~chr2 174398067 174675806 7 ++ 1.747868 7 3 4 7 10 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr2~177065789~Nchr2~177065920 intergenic "-," "-," chr2~chr2 177065789 177065920 2 -- 0.693147 2 0 2 2 18 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr2~177065915~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065915 177065788 5 ++ 1.332179 5 0 5 5 6 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr2~177065929~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065929 177065788 2 ++ 0.693147 2 0 2 2 74 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr2~81775871~Nchr2~82024942 intergenic "-," "-," chr2~chr2 81775871 82024942 8 ++ 1.906155 5 3 2 5 8 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr3~18083033~Nchr3~18383739 intergenic "-," "-," chr3~chr3 18083033 18383739 2 ++ 0.693147 2 1 1 2 8 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr3~18105554~Nchr3~18383739 intergenic "-," "-," chr3~chr3 18105554 18383739 5 ++ 1.609438 5 3 2 5 18 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr3~18105864~Nchr3~18351731 intergenic "-," "-," chr3~chr3 18105864 18351731 4 ++ 1.386294 3 0 3 3 12 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr3~18113708~Nchr3~18351731 intergenic "-," "-," chr3~chr3 18113708 18351731 2 ++ 0.693147 2 1 1 2 20 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr3~80121934~Nchr3~80356744 intergenic "-," "-," chr3~chr3 80121934 80356744 3 ++ 1.098612 3 2 1 3 12 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr4~174777617~Nchr4~175008683 intergenic "-," "-," chr4~chr4 174777617 175008683 5 ++ 1.332179 4 3 1 4 6 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr4~63303516~Nchr4~63303647 intergenic "-," "-," chr4~chr4 63303516 63303647 2 -- 0.693147 2 2 0 2 2 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr5~106038599~CTC-254B4.1 intergenic "-," "CTC-254B4.1," chr5~chr5 106038599 106313844 19 ++ 2.479122 17 7 10 17 38 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr5~13253070~Nchr5~12888396 intergenic "-," "-," chr5~chr5 13253070 12888396 7 -- 1.475076 1 1 0 1 2 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr5~28810255~Nchr5~29052828 intergenic "-," "-," chr5~chr5 28810255 29052828 2 ++ 0.693147 2 1 1 2 4 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 8 -- 1.494175 5 5 0 5 6 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr6~57575705~Nchr5~21565639 intergenic "-," "-," chr6~chr5 57575705 21565639 4 +- 1.386294 3 2 1 3 24 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr6~57575705~Nchr5~21567300 intergenic "-," "-," chr6~chr5 57575705 21567300 7 +- 1.747868 6 6 0 6 42 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr7~122851462~Nchr7~123096679 intergenic "-," "-," chr7~chr7 122851462 123096679 14 ++ 0.51958 14 0 14 14 36 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr7~122851497~Nchr7~123096679 intergenic "-," "-," chr7~chr7 122851497 123096679 94 ++ 2.754165 87 3 84 87 514 TCGA-QQ-A5VC-01A-31R-A32Q-07 Nchr8~88805614~AF121898.3 intergenic "-," "AF121898.3," chr8~chr8 88805614 88554717 2 -- 0.693147 1 0 1 1 4 TCGA-QQ-A5VC-01A-31R-A32Q-07 NchrX~20967705~NchrX~20745157 intergenic "-," "-," chrX~chrX 20967705 20745157 5 -- 1.609438 3 1 2 3 10 TCGA-QQ-A5VC-01A-31R-A32Q-07 NchrX~38679771~NchrX~38991064 intergenic "-," "-," chrX~chrX 38679771 38991064 2 ++ 0.693147 2 2 0 2 6 TCGA-QQ-A5VC-01A-31R-A32Q-07 NchrX~43147500~MAOA intergenic "-," "MAOA," chrX~chrX 43147500 43542761 8 ++ 1.906155 8 5 3 8 38 TCGA-QQ-A5VC-01A-31R-A32Q-07 RP11-124N3.3~Nchr5~18772862 intergenic "RP11-124N3.3," "-," chr5~chr5 19142167 18772862 7 -- 1.94591 6 2 4 6 18 TCGA-QQ-A5VC-01A-31R-A32Q-07 RP11-328J2.1~Nchr7~119140163 intergenic "RP11-328J2.1," "-," chr7~chr7 119440870 119140163 21 -- 2.42548 15 12 3 15 12 TCGA-QQ-A5VC-01A-31R-A32Q-07 RP11-328J2.1~Nchr7~119140163 intergenic "RP11-328J2.1," "-," chr7~chr7 119422338 119140163 13 -- 2.245035 7 4 3 7 66 TCGA-QQ-A5VC-01A-31R-A32Q-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 18 ++ 2.399204 18 11 7 18 76 TCGA-QQ-A5VC-01A-31R-A32Q-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 12 +- 1.126929 12 0 12 12 2 TCGA-QQ-A5VC-01A-31R-A32Q-07 TRERF1~SUPT3H fusion "TRERF1," "SUPT3H," chr6~chr6 42210986 44988363 2 -- 0.693147 2 2 0 2 116 TCGA-QQ-A5VC-01A-31R-A32Q-07 TRERF1~SUPT3H fusion "TRERF1," "SUPT3H," chr6~chr6 42210986 44988369 41 -- 2.591611 37 13 24 37 128 TCGA-QQ-A5VC-01A-31R-A32Q-07 VCL~Nchr10~75734722 intergenic "VCL," "-," chr10~chr10 75849956 75734722 7 ++ 1.549826 5 3 2 5 10 TCGA-QQ-A5VC-01A-31R-A32Q-07 VCL~Nchr10~75734808 intergenic "VCL," "-," chr10~chr10 75849956 75734808 3 ++ 1.098612 3 3 0 3 4 TCGA-QQ-A5VC-01A-31R-A32Q-07 ZEB1~MSRB2 fusion "ZEB1," "MSRB2," chr10~chr10 31608221 23399171 2 ++ 0.693147 2 1 1 2 2 TCGA-QQ-A5V2-01A-11R-A32Q-07 Nchr11~27603245~RPS25 intergenic "-," "RPS25," chr11~chr11 27603245 118889038 2 -- 0.693147 2 1 1 2 182 TCGA-QQ-A5V2-01A-11R-A32Q-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 72 -+ 2.468584 23 0 23 23 40 TCGA-QQ-A5V2-01A-11R-A32Q-07 Nchr14~99439461~Nchr14~99439316 intergenic "-," "-," chr14~chr14 99439461 99439316 6 ++ 1.242453 6 0 6 6 26 TCGA-QQ-A5V2-01A-11R-A32Q-07 Nchr14~99439494~Nchr14~99439316 intergenic "-," "-," chr14~chr14 99439494 99439316 4 ++ 0.562335 4 0 4 4 74 TCGA-QQ-A5V2-01A-11R-A32Q-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 5 ++ 1.05492 5 0 5 5 2 TCGA-QQ-A5V2-01A-11R-A32Q-07 Nchr2~177065909~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065909 177065788 5 ++ 0.673012 5 0 5 5 4 TCGA-QQ-A5V2-01A-11R-A32Q-07 Nchr2~177065915~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065915 177065788 7 ++ 0.410116 7 0 7 7 8 TCGA-QQ-A5V2-01A-11R-A32Q-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 3 -- 1.098612 2 2 0 2 4 TCGA-QQ-A5V2-01A-11R-A32Q-07 Nchr8~55074725~Nchr8~55285761 intergenic "-," "-," chr8~chr8 55074725 55285761 6 ++ 1.011404 6 0 6 6 16 TCGA-QQ-A5V2-01A-11R-A32Q-07 PDE4DIP~Nchr1~147917467 intergenic "PDE4DIP," "-," chr1~chr1 144994591 147917467 4 -+ 0.562335 3 0 3 3 8 TCGA-QQ-A5V2-01A-11R-A32Q-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 23 ++ 2.039582 23 7 16 23 30 TCGA-QQ-A5V9-01A-11R-A32Q-07 CHD1~PDE3A fusion "CHD1," "PDE3A," chr5~chr12 98205458 20602077 9 -+ 1.889159 7 5 2 7 76 TCGA-QQ-A5V9-01A-11R-A32Q-07 CHD1~RP11-348J24.2 fusion "CHD1," "RP11-348J24.2," chr5~chr5 98204199 91500422 5 -+ 0.950271 5 2 3 5 22 TCGA-QQ-A5V9-01A-11R-A32Q-07 CHD1~RP11-348J24.2 fusion "CHD1," "RP11-348J24.2," chr5~chr5 98204199 91500426 2 -+ 0.693147 2 0 2 2 22 TCGA-QQ-A5V9-01A-11R-A32Q-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 96 -- 2.179016 95 95 0 95 106 TCGA-QQ-A5V9-01A-11R-A32Q-07 IGHV3-13~IGHG1 fusion "IGHV3-13," "IGHG1," chr14~chr14 106586542 106209407 4 -- 0.693147 4 2 2 4 22 TCGA-QQ-A5V9-01A-11R-A32Q-07 IGKV5-2~AC096579.7 fusion "IGKV5-2," "IGKC,AC096579.7," chr2~chr2 89196859 89157196 15 +- 1.806507 14 3 11 14 48 TCGA-QQ-A5V9-01A-11R-A32Q-07 NOP56~Nchr12~79952582 intergenic "NOP56,NOP56," "-," chr20~chr12 2637857 79952582 5 ++ 1.609438 5 1 4 5 6 TCGA-QQ-A5V9-01A-11R-A32Q-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 61 -+ 2.536732 22 0 22 22 10 TCGA-QQ-A5V9-01A-11R-A32Q-07 Nchr12~104659397~Nchr12~104659506 intergenic "-," "-," chr12~chr12 104659397 104659506 3 -- 0.636514 3 0 3 3 6 TCGA-QQ-A5V9-01A-11R-A32Q-07 Nchr16~33952374~GPR133 intergenic "-," "GPR133," chr16~chr12 33952374 131620259 129 +- 3.05356 51 50 1 51 10 TCGA-QQ-A5V9-01A-11R-A32Q-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 43 -+ 2.802337 43 27 16 43 552 TCGA-QQ-A5V9-01A-11R-A32Q-07 Nchr2~122702023~Nchr2~122978395 intergenic "-," "-," chr2~chr2 122702023 122978395 5 ++ 1.332179 4 3 1 4 6 TCGA-QQ-A5V9-01A-11R-A32Q-07 Nchr2~177065788~Nchr2~177065931 intergenic "-," "-," chr2~chr2 177065788 177065931 3 -- 0.636514 3 0 3 3 48 TCGA-QQ-A5V9-01A-11R-A32Q-07 Nchr2~177065929~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065929 177065788 7 ++ 1.277034 7 0 7 7 44 TCGA-QQ-A5V9-01A-11R-A32Q-07 Nchr3~87138757~Nchr3~86452630 intergenic "-," "-," chr3~chr3 87138757 86452630 2 ++ 0.693147 2 1 1 2 6 TCGA-QQ-A5V9-01A-11R-A32Q-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 5 ++ 1.332179 5 5 0 5 12 TCGA-QQ-A5V9-01A-11R-A32Q-07 Nchr6~8558876~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8558876 8784424 8 ++ 1.906155 4 1 3 4 2 TCGA-QQ-A5V9-01A-11R-A32Q-07 Nchr9~19200532~RPS6 intergenic "-," "RPS6," chr9~chr9 19200532 19378478 4 -- 0.562335 4 0 4 4 100 TCGA-QQ-A5V9-01A-11R-A32Q-07 Nchr9~33624925~Nchr9~33625149 intergenic "-," "-," chr9~chr9 33624925 33625149 2 -- 0.693147 2 2 0 2 2 TCGA-QQ-A5V9-01A-11R-A32Q-07 NchrX~70182816~NchrX~70182959 intergenic "-," "-," chrX~chrX 70182816 70182959 2 -- 0.693147 2 2 0 2 18 TCGA-QQ-A5V9-01A-11R-A32Q-07 PAG1~IMPA1 fusion "PAG1," "IMPA1," chr8~chr8 81937455 82572902 7 -- 0.9557 7 2 5 7 18 TCGA-QQ-A5V9-01A-11R-A32Q-07 PTPRM~Nchr21~44218004 intergenic "PTPRM," "-," chr18~chr21 8114825 44218004 7 +- 1.94591 7 2 5 7 20 TCGA-QQ-A5V9-01A-11R-A32Q-07 ROCK1~C20orf103 fusion "ROCK1," "C20orf103," chr18~chr20 18619433 9510289 43 -+ 2.811162 42 19 21 42 60 TCGA-QQ-A5V9-01A-11R-A32Q-07 RP11-288D9.1~PTPRQ fusion "RP11-288D9.1," "PTPRQ," chr12~chr12 80849275 80862489 3 -+ 1.098612 3 0 3 3 6 TCGA-QQ-A5V9-01A-11R-A32Q-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 2 ++ 0.693147 2 0 2 2 6 TCGA-QQ-A5V9-01A-11R-A32Q-07 THBS4~Nchr5~105529447 intergenic "THBS4," "-," chr5~chr5 79357655 105529447 2 +- 0.693147 2 2 0 2 6 TCGA-QQ-A5VA-01A-12R-A32Q-07 AC096579.7~AC096579.13 fusion "IGKC,AC096579.7," "IGKJ2,AC096579.13," chr2~chr2 89157090 89161058 4 -- 1.039721 4 0 4 4 184 TCGA-QQ-A5VA-01A-12R-A32Q-07 AC096579.7~AC096579.13 fusion "IGKC,AC096579.7," "IGKJ2,AC096579.13," chr2~chr2 89156985 89161061 3 -- 0.636514 3 0 3 3 1650 TCGA-QQ-A5VA-01A-12R-A32Q-07 AC096579.7~IGKJ4 fusion "IGKC,AC096579.7," "IGKJ4," chr2~chr2 89157090 89160418 14 -- 1.270018 9 0 9 9 196 TCGA-QQ-A5VA-01A-12R-A32Q-07 AC096579.7~Nchr14~106134679 intergenic "IGKC,AC096579.7," "-," chr2~chr14 89156855 106134679 2 +- 0.693147 2 2 0 2 8 TCGA-QQ-A5VA-01A-12R-A32Q-07 AHCYL2~TFIP11 fusion "AHCYL2," "TFIP11," chr7~chr22 128914267 26892855 3 +- 1.098612 2 1 1 2 12 TCGA-QQ-A5VA-01A-12R-A32Q-07 ANLN~DGKB fusion "ANLN," "DGKB," chr7~chr7 36436028 14517850 6 +- 1.791759 2 1 1 2 2 TCGA-QQ-A5VA-01A-12R-A32Q-07 ANLN~TMEM135 fusion "ANLN," "TMEM135," chr7~chr11 36478899 86868383 34 ++ 2.728845 16 6 10 16 38 TCGA-QQ-A5VA-01A-12R-A32Q-07 ANO6~EDA fusion "ANO6," "EDA," chr12~chrX 45797319 69080688 7 ++ 1.549826 7 4 3 7 42 TCGA-QQ-A5VA-01A-12R-A32Q-07 ARHGEF12~CEP164 fusion "ARHGEF12," "CEP164," chr11~chr11 120207984 117206321 4 ++ 1.039721 4 0 4 4 4 TCGA-QQ-A5VA-01A-12R-A32Q-07 ARHGEF12~CEP164 fusion "ARHGEF12," "CEP164," chr11~chr11 120207984 117209282 10 ++ 2.025326 8 2 6 8 52 TCGA-QQ-A5VA-01A-12R-A32Q-07 ARHGEF12~CEP164 fusion "ARHGEF12," "CEP164," chr11~chr11 120207984 117214882 2 ++ 0.693147 2 0 2 2 38 TCGA-QQ-A5VA-01A-12R-A32Q-07 ATM~OAF fusion "ATM,NPAT," "OAF," chr11~chr11 108093227 120091167 2 -+ 0.693147 2 0 2 2 166 TCGA-QQ-A5VA-01A-12R-A32Q-07 ATM~OAF fusion "ATM,NPAT," "OAF," chr11~chr11 108093227 120096370 29 -+ 2.90098 25 14 11 25 138 TCGA-QQ-A5VA-01A-12R-A32Q-07 C13orf1~Nchr10~113088779 intergenic "C13orf1," "-," chr13~chr10 50502055 113088779 199 -- 3.007586 193 18 174 193 170 TCGA-QQ-A5VA-01A-12R-A32Q-07 C14orf135~Nchr4~44509387 intergenic "C14orf135," "-," chr14~chr4 60575495 44509387 4 -+ 1.039721 4 4 0 4 2 TCGA-QQ-A5VA-01A-12R-A32Q-07 CARD10~Nchr7~123720373 intergenic "CARD10," "-," chr22~chr7 37898609 123720373 4 -- 1.386294 3 1 2 3 16 TCGA-QQ-A5VA-01A-12R-A32Q-07 CCL21~Nchr9~34710133 intergenic "CCL21," "-," chr9~chr9 34709977 34710133 2 -- 0.693147 2 0 2 2 6 TCGA-QQ-A5VA-01A-12R-A32Q-07 COL1A1~AC096579.7 fusion "COL1A1," "IGKC,AC096579.7," chr17~chr2 48262846 89156837 10 -- 1.834372 10 10 0 10 34 TCGA-QQ-A5VA-01A-12R-A32Q-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271790 94047830 3 -+ 1.098612 2 1 1 2 4 TCGA-QQ-A5VA-01A-12R-A32Q-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268178 189870076 4 -+ 1.039721 4 3 1 4 6 TCGA-QQ-A5VA-01A-12R-A32Q-07 COL1A2~Nchr7~93754041 intergenic "COL1A2," "-," chr7~chr7 94044582 93754041 5 ++ 1.332179 4 2 2 4 32 TCGA-QQ-A5VA-01A-12R-A32Q-07 COL1A2~Nchr7~93758485 intergenic "COL1A2," "-," chr7~chr7 94044582 93758485 8 ++ 1.667462 7 5 2 7 8 TCGA-QQ-A5VA-01A-12R-A32Q-07 DENND4A~Nchr15~67279985 intergenic "DENND4A," "-," chr15~chr15 65982753 67279985 3 -- 0.636514 3 3 0 3 10 TCGA-QQ-A5VA-01A-12R-A32Q-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 5 +- 1.609438 5 5 0 5 24 TCGA-QQ-A5VA-01A-12R-A32Q-07 EDF1~Nchr9~139760751 intergenic "EDF1," "-," chr9~chr9 139758307 139760751 2 +- 0.693147 2 1 1 2 24 TCGA-QQ-A5VA-01A-12R-A32Q-07 EFS~Nchr9~44817236 intergenic "EFS," "-," chr14~chr9 23834217 44817236 6 -- 1.791759 5 2 3 5 28 TCGA-QQ-A5VA-01A-12R-A32Q-07 HLA-A~Nchr6~29858023 intergenic "HLA-A," "-," chr6~chr6 29912393 29858023 2 ++ 0.693147 2 0 2 2 2 TCGA-QQ-A5VA-01A-12R-A32Q-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31236835 31322301 2 -- 0.693147 2 0 2 2 96 TCGA-QQ-A5VA-01A-12R-A32Q-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 52 -- 2.199713 51 49 2 51 82 TCGA-QQ-A5VA-01A-12R-A32Q-07 HLA-E~HLA-G fusion "HLA-E," "HLA-G," chr6~chr6 30460336 29797357 4 ++ 0.562335 3 1 2 3 50 TCGA-QQ-A5VA-01A-12R-A32Q-07 HMG20A~Nchr15~83968516 intergenic "HMG20A," "-," chr15~chr15 77759649 83968516 8 +- 2.079442 8 3 5 8 22 TCGA-QQ-A5VA-01A-12R-A32Q-07 HMG20A~Nchr15~83983855 intergenic "HMG20A," "-," chr15~chr15 77759649 83983855 20 +- 2.359266 19 11 8 19 58 TCGA-QQ-A5VA-01A-12R-A32Q-07 HMG20A~Nchr15~83996722 intergenic "HMG20A," "-," chr15~chr15 77759649 83996722 3 +- 1.098612 3 0 3 3 76 TCGA-QQ-A5VA-01A-12R-A32Q-07 IGHG1~IGHV1-24 fusion "IGHG1," "IGHV1-24," chr14~chr14 106209356 106733590 2 -- 0.693147 1 0 1 1 204 TCGA-QQ-A5VA-01A-12R-A32Q-07 IGHG2~IGHG1 fusion "IGHG2," "IGHG1," chr14~chr14 106110405 106208559 22 -- 1.76653 18 6 12 18 196 TCGA-QQ-A5VA-01A-12R-A32Q-07 IGHG4~IGHG3 fusion "IGHG4," "IGHG3," chr14~chr14 106091681 106236323 1 -- 0.693147 2 1 0 2 6 TCGA-QQ-A5VA-01A-12R-A32Q-07 IGHG4~IGHM fusion "IGHG4," "IGHM," chr14~chr14 106091249 106321172 2 -- 0.693147 2 0 2 2 2 TCGA-QQ-A5VA-01A-12R-A32Q-07 IGHJ5~IGHA2 fusion "IGHJ5," "IGHA2," chr14~chr14 106330024 106054211 3 -- 1.098612 2 2 0 2 2 TCGA-QQ-A5VA-01A-12R-A32Q-07 IGHM~AC096579.7 fusion "IGHM," "IGKC,AC096579.7," chr14~chr2 106321245 89156837 3 -- 1.098612 3 3 0 3 48 TCGA-QQ-A5VA-01A-12R-A32Q-07 IGHV1-3~IGHG3 fusion "IGHV1-3," "IGHG3," chr14~chr14 106471636 106237742 2 -- 0.693147 1 1 0 1 20 TCGA-QQ-A5VA-01A-12R-A32Q-07 IGHV1-8~IGHG1 fusion "IGHV1-8," "IGHG1," chr14~chr14 106539470 106209407 6 -- 1.56071 4 2 2 4 400 TCGA-QQ-A5VA-01A-12R-A32Q-07 IGHV1-8~IGHM fusion "IGHV1-8," "IGHM," chr14~chr14 106539470 106322322 18 -- 2.345737 20 17 1 20 898 TCGA-QQ-A5VA-01A-12R-A32Q-07 IGHV7-81~IGHG1 fusion "IGHV7-81," "IGHG1," chr14~chr14 107282989 106209407 100 -- 3.217139 92 42 50 92 338 TCGA-QQ-A5VA-01A-12R-A32Q-07 IGKV5-2~AC096579.7 fusion "IGKV5-2," "IGKC,AC096579.7," chr2~chr2 89196859 89157196 9 +- 1.889159 9 8 1 9 52 TCGA-QQ-A5VA-01A-12R-A32Q-07 IGLL5~Nchr22~23257852 intergenic "IGLL5,IGLC1," "-," chr22~chr22 23237566 23257852 119 -- 2.193425 25 0 22 25 12 TCGA-QQ-A5VA-01A-12R-A32Q-07 IGLV4-69~IGLJ3 fusion "IGLV4-69," "IGLJ3," chr22~chr22 22385863 23247166 4 ++ 1.386294 4 2 2 4 5494 TCGA-QQ-A5VA-01A-12R-A32Q-07 INSR~Nchr4~38645556 intergenic "INSR," "-," chr19~chr4 7267356 38645556 5 -+ 1.332179 5 4 1 5 54 TCGA-QQ-A5VA-01A-12R-A32Q-07 INSR~Nchr4~38648197 intergenic "INSR," "-," chr19~chr4 7267356 38648197 9 -+ 2.043192 9 6 3 9 48 TCGA-QQ-A5VA-01A-12R-A32Q-07 KIAA0146~Nchr8~78628348 intergenic "KIAA0146," "-," chr8~chr8 48626203 78628348 4 ++ 1.039721 4 2 2 4 34 TCGA-QQ-A5VA-01A-12R-A32Q-07 KIAA0146~Nchr8~78649904 intergenic "KIAA0146," "-," chr8~chr8 48626203 78649904 3 ++ 0.636514 3 1 2 3 6 TCGA-QQ-A5VA-01A-12R-A32Q-07 KIAA2026~Nchr7~85706362 intergenic "KIAA2026," "-," chr9~chr7 5988345 85706362 2 -- 0.693147 2 1 1 2 14 TCGA-QQ-A5VA-01A-12R-A32Q-07 KIAA2026~Nchr7~96344026 intergenic "KIAA2026," "-," chr9~chr7 5988345 96344026 5 -+ 1.609438 5 5 0 5 24 TCGA-QQ-A5VA-01A-12R-A32Q-07 LPP~RP11-430L16.1 fusion "LPP," "RP11-430L16.1," chr3~chr3 187943315 187864354 8 ++ 2.079442 6 4 2 6 8 TCGA-QQ-A5VA-01A-12R-A32Q-07 MAFF~OSBP2 fusion "MAFF," "OSBP2," chr22~chr22 38598219 31266416 18 ++ 2.582306 18 17 1 18 20 TCGA-QQ-A5VA-01A-12R-A32Q-07 MCPH1~APBB2 fusion "MCPH1," "APBB2," chr8~chr4 6272404 40947090 2 +- 0.693147 2 2 0 2 4 TCGA-QQ-A5VA-01A-12R-A32Q-07 MCPH1~NchrX~79806847 intergenic "MCPH1," "-," chr8~chrX 6272404 79806847 9 +- 1.889159 9 7 2 9 12 TCGA-QQ-A5VA-01A-12R-A32Q-07 NCRNA00238~Nchr14~66724179 intergenic "NCRNA00238," "-," chr14~chr14 66962980 66724179 3 -- 1.098612 3 2 1 3 6 TCGA-QQ-A5VA-01A-12R-A32Q-07 NOP56~Nchr12~79952582 intergenic "NOP56,NOP56," "-," chr20~chr12 2637857 79952582 12 ++ 2.138333 8 0 8 8 2 TCGA-QQ-A5VA-01A-12R-A32Q-07 Nchr12~56989159~Nchr12~56989340 intergenic "-," "-," chr12~chr12 56989159 56989340 2 -- 0.693147 2 2 0 2 2 TCGA-QQ-A5VA-01A-12R-A32Q-07 Nchr12~87232443~MGAT4C intergenic "-," "MGAT4C," chr12~chr12 87232443 86829042 3 -- 1.098612 2 1 1 2 2 TCGA-QQ-A5VA-01A-12R-A32Q-07 Nchr14~106135456~IGHG1 intergenic "-," "IGHG1," chr14~chr14 106135456 106209156 2 -- 0.693147 2 0 2 2 986 TCGA-QQ-A5VA-01A-12R-A32Q-07 Nchr14~106318557~IGHM intergenic "-," "IGHM," chr14~chr14 106318557 106320622 2 +- 0.693147 1 1 0 1 6 TCGA-QQ-A5VA-01A-12R-A32Q-07 Nchr14~28125544~Nchr14~27791347 intergenic "-," "-," chr14~chr14 28125544 27791347 5 -- 1.332179 5 1 4 5 16 TCGA-QQ-A5VA-01A-12R-A32Q-07 Nchr1~51623362~CFL1 intergenic "-," "CFL1," chr1~chr11 51623362 65622526 3 ++ 0.636514 2 0 2 2 2 TCGA-QQ-A5VA-01A-12R-A32Q-07 Nchr21~9827008~Nchr21~9827121 intergenic "-," "-," chr21~chr21 9827008 9827121 2 -- 0.693147 2 2 0 2 2 TCGA-QQ-A5VA-01A-12R-A32Q-07 Nchr2~177065789~Nchr2~177065920 intergenic "-," "-," chr2~chr2 177065789 177065920 3 -- 0.636514 3 0 3 3 14 TCGA-QQ-A5VA-01A-12R-A32Q-07 Nchr2~177065909~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065909 177065788 2 ++ 0.693147 2 0 2 2 6 TCGA-QQ-A5VA-01A-12R-A32Q-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 4 -- 1.039721 3 3 0 3 4 TCGA-QQ-A5VA-01A-12R-A32Q-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 7 ++ 1.747868 7 7 0 7 10 TCGA-QQ-A5VA-01A-12R-A32Q-07 Nchr6~8558876~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8558876 8784424 8 ++ 1.494175 1 0 1 1 2 TCGA-QQ-A5VA-01A-12R-A32Q-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 36 ++ 2.513694 2 0 2 2 4 TCGA-QQ-A5VA-01A-12R-A32Q-07 PTK2~Nchr8~143128192 intergenic "PTK2," "-," chr8~chr8 141721821 143128192 4 +- 1.386294 3 1 2 3 4 TCGA-QQ-A5VA-01A-12R-A32Q-07 PTPRQ~RP11-288D9.1 fusion "PTPRQ," "RP11-288D9.1," chr12~chr12 80839497 80852602 3 +- 1.098612 3 2 1 3 2 TCGA-QQ-A5VA-01A-12R-A32Q-07 RAI14~Nchr5~27860817 intergenic "RAI14," "-," chr5~chr5 34687060 27860817 2 +- 0.693147 1 1 0 1 6 TCGA-QQ-A5VA-01A-12R-A32Q-07 RAI14~Nchr5~27991765 intergenic "RAI14," "-," chr5~chr5 34687060 27991765 9 +- 1.002718 8 5 3 8 38 TCGA-QQ-A5VA-01A-12R-A32Q-07 RAI14~Nchr5~27992573 intergenic "RAI14," "-," chr5~chr5 34687060 27992573 2 +- 0.693147 1 1 0 1 42 TCGA-QQ-A5VA-01A-12R-A32Q-07 RP11-288D9.1~PTPRQ fusion "RP11-288D9.1," "PTPRQ," chr12~chr12 80849275 80862489 3 -+ 1.098612 3 1 2 3 14 TCGA-QQ-A5VA-01A-12R-A32Q-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 7 ++ 1.475076 7 5 2 7 30 TCGA-QQ-A5VA-01A-12R-A32Q-07 RPS9~Nchr19~50223193 intergenic "RPS9," "-," chr19~chr19 54705392 50223193 2 ++ 0.693147 1 0 1 1 86 TCGA-QQ-A5VA-01A-12R-A32Q-07 SCAMP2~CHRNA9 fusion "SCAMP2," "CHRNA9," chr15~chr4 75137814 40350899 3 -+ 1.098612 3 1 2 3 18 TCGA-QQ-A5VA-01A-12R-A32Q-07 SHFM1~RP11-218I7.2 fusion "SHFM1," "RP11-218I7.2," chr7~chr9 96339000 6066365 5 -+ 0.950271 5 5 0 5 14 TCGA-QQ-A5VA-01A-12R-A32Q-07 SKAP2~KIAA1377 fusion "SKAP2," "KIAA1377," chr7~chr11 26883649 101814996 6 -+ 1.56071 6 5 1 6 14 TCGA-QQ-A5VA-01A-12R-A32Q-07 SMPX~PDHA1 fusion "SMPX," "PDHA1," chrX~chrX 21761868 19367430 20 -+ 2.553682 20 14 6 20 50 TCGA-QQ-A5VA-01A-12R-A32Q-07 SPATS2~TUBA1C fusion "SPATS2," "TUBA1C," chr12~chr12 49761370 49602615 8 ++ 1.494175 8 7 1 8 46 TCGA-QQ-A5VA-01A-12R-A32Q-07 SPATS2~TUBA1C fusion "SPATS2," "TUBA1C," chr12~chr12 49765073 49602615 11 ++ 1.972247 9 8 1 9 70 TCGA-QQ-A5VA-01A-12R-A32Q-07 SPATS2~TUBA1C fusion "SPATS2," "TUBA1C," chr12~chr12 49765073 49621874 5 ++ 1.332179 5 4 1 5 34 TCGA-QQ-A5VA-01A-12R-A32Q-07 SPECC1L~TM6SF1 fusion "SPECC1L," "TM6SF1," chr22~chr15 24765288 83795507 3 ++ 1.098612 3 1 2 3 28 TCGA-QQ-A5VA-01A-12R-A32Q-07 SPECC1L~TM6SF1 fusion "SPECC1L," "TM6SF1," chr22~chr15 24765288 83796110 11 ++ 2.145842 9 4 5 9 28 TCGA-QQ-A5VA-01A-12R-A32Q-07 TMEM135~Nchr11~108494659 intergenic "TMEM135," "-," chr11~chr11 86868448 108494659 14 +- 2.205598 12 1 11 12 8 TCGA-QQ-A5VA-01A-12R-A32Q-07 TMEM135~Nchr7~23905659 intergenic "TMEM135," "-," chr11~chr7 86869813 23905659 3 +- 1.098612 1 0 1 1 10 TCGA-QQ-A5VA-01A-12R-A32Q-07 TMEM135~Nchr7~23905659 intergenic "TMEM135," "-," chr11~chr7 86868448 23905659 6 +- 1.56071 2 0 2 2 6 TCGA-QQ-A5VA-01A-12R-A32Q-07 TRAPPC9~RP11-384F7.1 fusion "TRAPPC9," "RP11-384F7.1," chr8~chr3 141370149 118227539 3 -- 1.098612 3 2 1 3 10 TCGA-QQ-A5VA-01A-12R-A32Q-07 TRIM13~AC068302.3 fusion "TRIM13," "AC068302.3," chr13~chr3 50571899 196730473 3 ++ 1.332179 5 3 0 5 12 TCGA-QQ-A5VA-01A-12R-A32Q-07 TRIM13~AC068302.3 fusion "TRIM13," "AC068302.3," chr13~chr3 50571899 196731365 2 ++ 0.693147 2 1 1 2 12 TCGA-QQ-A5VA-01A-12R-A32Q-07 ZBTB16~CARD18 fusion "ZBTB16," "CARD18," chr11~chr11 113935290 105009805 4 +- 1.039721 4 2 2 4 4 TCGA-QQ-A5VA-01A-12R-A32Q-07 ZBTB24~STK32C fusion "ZBTB24," "STK32C," chr6~chr10 109797378 134059459 12 -- 2.210254 12 5 7 12 56 TCGA-QQ-A5VA-01A-12R-A32Q-07 ZFC3H1~TSPAN8 fusion "ZFC3H1," "TSPAN8," chr12~chr12 72013095 71676599 5 -- 1.332179 4 4 0 4 20 TCGA-QQ-A5VA-01A-12R-A32Q-07 ZFC3H1~TSPAN8 fusion "ZFC3H1," "TSPAN8," chr12~chr12 72013706 71676599 3 -- 1.098612 1 1 0 1 8 TCGA-QQ-A5VA-01A-12R-A32Q-07 ZFC3H1~TSPAN8 fusion "ZFC3H1," "TSPAN8," chr12~chr12 72013095 71697173 6 -- 1.242453 2 2 0 2 32 TCGA-QQ-A5VA-01A-12R-A32Q-07 ZFX~Nchr7~13363468 intergenic "ZFX," "-," chrX~chr7 24227157 13363468 6 ++ 1.791759 6 2 4 6 10 TCGA-QQ-A5VA-01A-12R-A32Q-07 ZNF37A~Nchr10~36879393 intergenic "ZNF37A," "-," chr10~chr10 38385560 36879393 4 ++ 1.386294 4 1 3 4 12 TCGA-QQ-A5VA-01A-12R-A32Q-07 ZNF37A~Nchr10~36888523 intergenic "ZNF37A," "-," chr10~chr10 38385560 36888523 2 ++ 0.693147 2 1 1 2 16 TCGA-QQ-A5VA-01A-12R-A32Q-07 ZNF37A~Nchr10~36889090 intergenic "ZNF37A," "-," chr10~chr10 38385560 36889090 9 ++ 2.043192 8 4 4 8 8 TCGA-K1-A6RV-01A-11R-A32Q-07 AC093642.5~THAP4 fusion "AC093642.5," "THAP4," chr2~chr2 243030952 242545888 24 +- 2.751916 21 19 2 21 52 TCGA-K1-A6RV-01A-11R-A32Q-07 AC093642.5~THAP4 fusion "AC093642.5," "THAP4," chr2~chr2 243037178 242545888 89 +- 3.108771 73 40 33 73 222 TCGA-K1-A6RV-01A-11R-A32Q-07 ADAMTS16~Nchr10~105873816 intergenic "ADAMTS16," "-," chr5~chr10 5232629 105873816 2 +- 0.693147 2 1 1 2 2 TCGA-K1-A6RV-01A-11R-A32Q-07 AGPAT9~COPS4 fusion "AGPAT9," "COPS4," chr4~chr4 84465755 83987591 23 ++ 2.380656 24 9 14 24 80 TCGA-K1-A6RV-01A-11R-A32Q-07 ANXA7~DNAJC9 fusion "ANXA7," "DNAJC9," chr10~chr10 75147447 74943334 3 -- 1.098612 3 1 2 3 6 TCGA-K1-A6RV-01A-11R-A32Q-07 APP~Nchr21~21674505 intergenic "APP," "-," chr21~chr21 27423316 21674505 4 -+ 1.386294 4 1 3 4 8 TCGA-K1-A6RV-01A-11R-A32Q-07 APP~Nchr21~21686974 intergenic "APP," "-," chr21~chr21 27423316 21686974 11 -+ 1.972247 8 0 8 8 28 TCGA-K1-A6RV-01A-11R-A32Q-07 APP~Nchr21~21737946 intergenic "APP," "-," chr21~chr21 27423316 21737946 3 -+ 1.098612 3 1 2 3 2 TCGA-K1-A6RV-01A-11R-A32Q-07 APP~Nchr21~21739390 intergenic "APP," "-," chr21~chr21 27423316 21739390 27 -+ 2.291559 25 17 8 25 64 TCGA-K1-A6RV-01A-11R-A32Q-07 APP~Nchr21~21778717 intergenic "APP," "-," chr21~chr21 27423316 21778717 2 -+ 0.693147 2 2 0 2 4 TCGA-K1-A6RV-01A-11R-A32Q-07 C10orf112~PLXDC2 fusion "C10orf112," "PLXDC2," chr10~chr10 19981483 20290704 2 ++ 0.693147 2 0 2 2 4 TCGA-K1-A6RV-01A-11R-A32Q-07 CMTM8~CMTM7 fusion "CMTM8," "CMTM7," chr3~chr3 32280611 32483332 2 ++ 0.693147 2 1 1 2 10 TCGA-K1-A6RV-01A-11R-A32Q-07 COL1A1~AEBP1 fusion "COL1A1," "AEBP1," chr17~chr7 48262998 44153582 7 -+ 1.153742 5 5 0 5 4 TCGA-K1-A6RV-01A-11R-A32Q-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049717 48269237 4 +- 0.562335 3 1 2 3 2 TCGA-K1-A6RV-01A-11R-A32Q-07 COL3A1~PTMS fusion "COL3A1," "PTMS," chr2~chr12 189873947 6878787 3 ++ 0.636514 3 0 3 3 2 TCGA-K1-A6RV-01A-11R-A32Q-07 COL8A1~C3orf26 fusion "COL8A1," "C3orf26," chr3~chr3 99509854 99865817 10 ++ 1.886697 10 1 9 10 26 TCGA-K1-A6RV-01A-11R-A32Q-07 COL8A1~C3orf26 fusion "COL8A1," "C3orf26," chr3~chr3 99513226 99865817 11 ++ 1.84622 10 2 8 10 42 TCGA-K1-A6RV-01A-11R-A32Q-07 DIP2C~ORC4 fusion "DIP2C," "ORC4," chr10~chr2 735434 148733544 12 -- 1.979205 12 1 11 12 8 TCGA-K1-A6RV-01A-11R-A32Q-07 DPYD~Nchr1~98775898 intergenic "DPYD," "-," chr1~chr1 98386440 98775898 14 -- 2.304619 10 4 6 10 46 TCGA-K1-A6RV-01A-11R-A32Q-07 ENO1~Nchr1~236648076 intergenic "ENO1," "-," chr1~chr1 8921250 236648076 4 -- 1.039721 4 4 0 4 4 TCGA-K1-A6RV-01A-11R-A32Q-07 FADS1~LSAMP fusion "FADS1," "LSAMP," chr11~chr3 61570273 115553444 5 -- 1.332179 5 2 3 5 24 TCGA-K1-A6RV-01A-11R-A32Q-07 FAT4~Nchr4~155903925 intergenic "FAT4," "-," chr4~chr4 126337777 155903925 7 +- 1.747868 6 5 1 6 10 TCGA-K1-A6RV-01A-11R-A32Q-07 FAT4~Nchr4~155904349 intergenic "FAT4," "-," chr4~chr4 126337777 155904349 8 +- 1.906155 8 3 5 8 10 TCGA-K1-A6RV-01A-11R-A32Q-07 GALNT13~Nchr2~88320215 intergenic "GALNT13," "-," chr2~chr2 154997018 88320215 3 ++ 1.098612 3 2 1 3 4 TCGA-K1-A6RV-01A-11R-A32Q-07 GALNT13~SMYD1 fusion "GALNT13," "SMYD1," chr2~chr2 154997018 88383835 27 ++ 2.651193 26 7 18 26 58 TCGA-K1-A6RV-01A-11R-A32Q-07 GAPDH~NchrX~46299827 intergenic "GAPDH," "-," chr12~chrX 6646369 46299827 5 -- 0.950271 1 1 0 1 96 TCGA-K1-A6RV-01A-11R-A32Q-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 156 -- 2.102002 156 155 1 156 82 TCGA-K1-A6RV-01A-11R-A32Q-07 IL1R1~RP11-124G5.3 fusion "IL1R1," "RP11-124G5.3," chr2~chr11 102721332 41549759 42 +- 2.70242 40 8 32 40 60 TCGA-K1-A6RV-01A-11R-A32Q-07 LTN1~Nchr21~18873122 intergenic "LTN1," "-," chr21~chr21 30354638 18873122 7 -- 1.94591 7 5 2 7 8 TCGA-K1-A6RV-01A-11R-A32Q-07 MAGI2~Nchr7~79146278 intergenic "AC004945.2,MAGI2," "-," chr7~chr7 79082336 79146278 37 -- 3.015665 37 18 19 37 100 TCGA-K1-A6RV-01A-11R-A32Q-07 MMP14~Nchr17~48259538 intergenic "MMP14," "-," chr14~chr17 23316071 48259538 3 -+ 1.098612 2 2 0 2 4 TCGA-K1-A6RV-01A-11R-A32Q-07 NTM~Nchr11~131535004 intergenic "NTM," "-," chr11~chr11 131240783 131535004 9 ++ 2.043192 9 2 7 9 18 TCGA-K1-A6RV-01A-11R-A32Q-07 NTM~SORL1 fusion "NTM," "SORL1," chr11~chr11 131240783 121475822 2 ++ 0.693147 1 0 1 1 20 TCGA-K1-A6RV-01A-11R-A32Q-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 109 -+ 2.569711 43 0 43 43 92 TCGA-K1-A6RV-01A-11R-A32Q-07 Nchr19~50223254~RPS9 intergenic "-," "RPS9," chr19~chr19 50223254 54704726 3 ++ 0.636514 1 0 1 1 32 TCGA-K1-A6RV-01A-11R-A32Q-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 28 -+ 2.787589 28 13 15 28 390 TCGA-K1-A6RV-01A-11R-A32Q-07 Nchr1~245836994~Nchr1~195062432 intergenic "-," "-," chr1~chr1 245836994 195062432 3 -- 1.098612 3 2 1 3 6 TCGA-K1-A6RV-01A-11R-A32Q-07 Nchr1~35816322~RPL5 intergenic "-," "RPL5," chr1~chr1 35816322 93297597 4 -+ 1.386294 3 0 3 3 4 TCGA-K1-A6RV-01A-11R-A32Q-07 Nchr1~35816887~RPL5 intergenic "-," "RPL5," chr1~chr1 35816887 93303094 7 -- 1.549826 4 0 4 4 14 TCGA-K1-A6RV-01A-11R-A32Q-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 2 ++ 0.693147 1 1 0 1 8 TCGA-K1-A6RV-01A-11R-A32Q-07 Nchr2~177065929~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065929 177065788 3 ++ 0.636514 3 0 3 3 38 TCGA-K1-A6RV-01A-11R-A32Q-07 Nchr3~18083033~Nchr3~18383739 intergenic "-," "-," chr3~chr3 18083033 18383739 3 ++ 1.098612 3 0 3 3 4 TCGA-K1-A6RV-01A-11R-A32Q-07 Nchr3~18105554~Nchr3~18383739 intergenic "-," "-," chr3~chr3 18105554 18383739 4 ++ 1.386294 4 1 3 4 10 TCGA-K1-A6RV-01A-11R-A32Q-07 Nchr5~93018536~NPM1 intergenic "-," "NPM1," chr5~chr5 93018536 170837597 2 -- 0.693147 2 1 1 2 30 TCGA-K1-A6RV-01A-11R-A32Q-07 PDCD11~PSD fusion "PDCD11," "FBXL15,PSD,FBXL15," chr10~chr10 105166547 104180809 25 ++ 2.324309 24 13 11 24 56 TCGA-K1-A6RV-01A-11R-A32Q-07 PDCD11~PSD fusion "PDCD11," "FBXL15,PSD,FBXL15," chr10~chr10 105166538 104180809 2 ++ 0.693147 2 2 0 2 54 TCGA-K1-A6RV-01A-11R-A32Q-07 RASA1~XRCC4 fusion "RASA1," "XRCC4," chr5~chr5 86645181 82648944 4 ++ 1.039721 4 4 0 4 8 TCGA-K1-A6RV-01A-11R-A32Q-07 RP11-108M21.1~RP11-445P19.1 fusion "RP11-108M21.1," "RP11-445P19.1," chr1~chr1 187062078 187412760 4 ++ 1.386294 1 0 1 1 4 TCGA-K1-A6RV-01A-11R-A32Q-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 3 ++ 1.098612 3 0 3 3 16 TCGA-K1-A6RV-01A-11R-A32Q-07 SLK~Nchr1~79147551 intergenic "SLK," "-," chr10~chr1 105759706 79147551 5 +- 1.332179 5 3 2 5 8 TCGA-K1-A6RV-01A-11R-A32Q-07 SMARCB1~SBF2 fusion "SMARCB1," "SBF2," chr22~chr11 24167602 10215534 4 +- 1.039721 2 1 1 2 2 TCGA-K1-A6RV-01A-11R-A32Q-07 SORL1~Nchr11~121514493 intergenic "SORL1," "-," chr11~chr11 121476280 121514493 2 +- 0.693147 2 1 1 2 6 TCGA-K1-A6RV-01A-11R-A32Q-07 SORL1~Nchr11~121515079 intergenic "SORL1," "-," chr11~chr11 121476280 121515079 13 +- 2.351673 12 4 8 12 22 TCGA-K1-A6RV-01A-11R-A32Q-07 ST3GAL4~Nchr11~126522676 intergenic "ST3GAL4," "-," chr11~chr11 126279306 126522676 6 ++ 1.791759 6 3 3 6 8 TCGA-K1-A6RV-01A-11R-A32Q-07 TCF7L1~GFPT1 fusion "TCF7L1," "GFPT1," chr2~chr2 85361573 69603173 4 +- 1.039721 4 2 2 4 2 TCGA-K1-A6RV-01A-11R-A32Q-07 TMX1~Nchr14~51576381 intergenic "TMX1," "-," chr14~chr14 51716483 51576381 7 ++ 1.004242 7 0 7 7 44 TCGA-K1-A6RV-01A-11R-A32Q-07 TMX1~Nchr14~51596012 intergenic "TMX1," "-," chr14~chr14 51716483 51596012 12 ++ 2.253858 12 4 8 12 22 TCGA-K1-A6RV-01A-11R-A32Q-07 WDR1~SLC2A9 fusion "WDR1," "SLC2A9," chr4~chr4 10078928 9836632 252 -- 3.003549 241 175 65 241 758 TCGA-N1-A6IA-01A-12R-A32Q-07 AGAP1~NchrX~42654168 intergenic "AGAP1," "-," chr2~chrX 236706530 42654168 11 +- 2.145842 10 7 3 10 14 TCGA-N1-A6IA-01A-12R-A32Q-07 AGAP1~NchrX~42664531 intergenic "AGAP1," "-," chr2~chrX 236706530 42664531 5 +- 0.950271 5 0 5 5 30 TCGA-N1-A6IA-01A-12R-A32Q-07 AGAP1~NchrX~42704547 intergenic "AGAP1," "-," chr2~chrX 236706530 42704547 7 +- 1.747868 4 1 3 4 40 TCGA-N1-A6IA-01A-12R-A32Q-07 ANKHD1~C5orf32 fusion "ANKHD1,ANKHD1-EIF4EBP3,ANKHD1," "PFDN1,C5orf32," chr5~chr5 139828890 139661082 6 ++ 1.791759 6 3 3 6 14 TCGA-N1-A6IA-01A-12R-A32Q-07 C15orf57~CBX3 fusion "C15orf57," "CBX3," chr15~chr7 40854971 26241389 3 -+ 1.098612 3 2 1 3 2 TCGA-N1-A6IA-01A-12R-A32Q-07 C1orf196~KAZN fusion "C1orf196," "KAZN," chr1~chr1 14507087 14925479 4 ++ 1.386294 3 3 0 3 4 TCGA-N1-A6IA-01A-12R-A32Q-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272685 94041946 5 -+ 0.950271 5 4 1 5 4 TCGA-N1-A6IA-01A-12R-A32Q-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271799 94043012 5 -+ 0.673012 5 3 2 5 40 TCGA-N1-A6IA-01A-12R-A32Q-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94047036 22 -+ 0.559834 23 21 1 23 36 TCGA-N1-A6IA-01A-12R-A32Q-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273675 94047856 19 -+ 1.65722 16 14 2 16 52 TCGA-N1-A6IA-01A-12R-A32Q-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271491 94049739 3 -+ 0.636514 2 2 0 2 56 TCGA-N1-A6IA-01A-12R-A32Q-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264376 94050330 4 -+ 1.039721 4 4 0 4 118 TCGA-N1-A6IA-01A-12R-A32Q-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266809 94052369 3 -+ 1.098612 2 0 2 2 64 TCGA-N1-A6IA-01A-12R-A32Q-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48275794 94052404 3 -+ 0.636514 3 2 1 3 2 TCGA-N1-A6IA-01A-12R-A32Q-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48263319 94058563 3 -+ 0.636514 3 3 0 3 40 TCGA-N1-A6IA-01A-12R-A32Q-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48271312 189860464 2 -+ 0.693147 1 1 0 1 12 TCGA-N1-A6IA-01A-12R-A32Q-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268836 189862999 4 -+ 1.039721 3 2 1 3 30 TCGA-N1-A6IA-01A-12R-A32Q-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48273284 189867690 2 -+ 0.693147 2 2 0 2 22 TCGA-N1-A6IA-01A-12R-A32Q-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047864 48266636 5 +- 1.332179 4 0 4 4 40 TCGA-N1-A6IA-01A-12R-A32Q-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48273560 10 +- 1.609438 1 0 1 1 10 TCGA-N1-A6IA-01A-12R-A32Q-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047864 48273560 16 +- 1.663136 13 0 13 13 28 TCGA-N1-A6IA-01A-12R-A32Q-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94034564 48274424 5 +- 1.332179 2 1 1 2 8 TCGA-N1-A6IA-01A-12R-A32Q-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94052430 189850391 16 ++ 2.067976 9 0 9 9 4 TCGA-N1-A6IA-01A-12R-A32Q-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94050339 189859791 7 ++ 1.004242 4 0 4 4 18 TCGA-N1-A6IA-01A-12R-A32Q-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94049756 189860418 2 ++ 0.693147 1 1 0 1 8 TCGA-N1-A6IA-01A-12R-A32Q-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94047143 189864568 4 ++ 1.386294 3 1 2 3 18 TCGA-N1-A6IA-01A-12R-A32Q-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94049598 189867024 3 ++ 1.098612 3 2 1 3 18 TCGA-N1-A6IA-01A-12R-A32Q-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94052430 189868137 4 ++ 1.386294 4 1 3 4 12 TCGA-N1-A6IA-01A-12R-A32Q-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94049598 189871071 4 ++ 1.386294 2 1 1 2 4 TCGA-N1-A6IA-01A-12R-A32Q-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870985 48265998 6 +- 1.56071 5 1 4 5 8 TCGA-N1-A6IA-01A-12R-A32Q-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189866315 48267469 2 +- 0.693147 2 1 1 2 56 TCGA-N1-A6IA-01A-12R-A32Q-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189863444 48268285 8 +- 0.37677 7 1 6 7 32 TCGA-N1-A6IA-01A-12R-A32Q-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189864295 48271311 13 +- 1.778233 10 1 9 10 40 TCGA-N1-A6IA-01A-12R-A32Q-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189859058 48272461 2 +- 0.693147 2 0 2 2 8 TCGA-N1-A6IA-01A-12R-A32Q-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189857666 48273026 3 +- 0.636514 2 2 0 2 8 TCGA-N1-A6IA-01A-12R-A32Q-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189864303 48273889 13 +- 1.410514 6 2 4 6 16 TCGA-N1-A6IA-01A-12R-A32Q-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189859285 94028361 8 ++ 0.974315 7 6 1 7 2 TCGA-N1-A6IA-01A-12R-A32Q-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189859557 94029508 3 ++ 1.098612 3 1 2 3 2 TCGA-N1-A6IA-01A-12R-A32Q-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189864271 94049552 2 ++ 0.693147 1 0 1 1 18 TCGA-N1-A6IA-01A-12R-A32Q-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189870985 94049703 7 ++ 1.549826 5 5 0 5 2 TCGA-N1-A6IA-01A-12R-A32Q-07 CPNE2~Nchr16~65397711 intergenic "CPNE2," "-," chr16~chr16 57126702 65397711 13 +- 2.031759 13 0 13 13 2 TCGA-N1-A6IA-01A-12R-A32Q-07 CTD-2006C1.2~Nchr19~12848273 intergenic "CTD-2006C1.2," "-," chr19~chr19 12098638 12848273 2 ++ 0.693147 2 0 2 2 32 TCGA-N1-A6IA-01A-12R-A32Q-07 CTD-2006C1.2~Nchr19~12848273 intergenic "CTD-2006C1.2," "-," chr19~chr19 12112637 12848273 26 ++ 2.008545 26 15 11 26 88 TCGA-N1-A6IA-01A-12R-A32Q-07 EIF4G3~RP4-601K24.1 fusion "EIF4G3," "RP4-601K24.1," chr1~chr1 21377359 83462398 29 -+ 2.545928 26 10 16 26 34 TCGA-N1-A6IA-01A-12R-A32Q-07 GPATCH8~METTL16 fusion "GPATCH8," "METTL16," chr17~chr17 42512433 2381179 13 -- 2.351673 11 8 3 11 12 TCGA-N1-A6IA-01A-12R-A32Q-07 HADHA~Nchr2~99894596 intergenic "HADHA," "-," chr2~chr2 26420560 99894596 7 -- 1.747868 7 5 2 7 22 TCGA-N1-A6IA-01A-12R-A32Q-07 HELZ~OAZ1 fusion "HELZ," "OAZ1," chr17~chr19 65199435 2272734 17 -+ 2.15006 17 9 8 17 84 TCGA-N1-A6IA-01A-12R-A32Q-07 HELZ~OAZ1 fusion "HELZ," "OAZ1," chr17~chr19 65199435 2272742 3 -+ 1.098612 3 3 0 3 88 TCGA-N1-A6IA-01A-12R-A32Q-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31236759 31322051 3 -- 0.636514 1 0 1 1 628 TCGA-N1-A6IA-01A-12R-A32Q-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 82 -- 2.352927 82 82 0 82 56 TCGA-N1-A6IA-01A-12R-A32Q-07 MAGT1~ATRX fusion "MAGT1," "ATRX," chrX~chrX 77150806 76856033 6 -- 1.242453 6 2 4 6 42 TCGA-N1-A6IA-01A-12R-A32Q-07 MAGT1~ATRX fusion "MAGT1," "ATRX," chrX~chrX 77150806 76872198 50 -- 2.982935 48 29 19 48 158 TCGA-N1-A6IA-01A-12R-A32Q-07 MGAT4B~RNF130 fusion "MGAT4B," "RNF130," chr5~chr5 179225165 179347426 6 -- 1.791759 6 3 3 6 12 TCGA-N1-A6IA-01A-12R-A32Q-07 NOP56~Nchr12~79952582 intergenic "NOP56,NOP56," "-," chr20~chr12 2637857 79952582 14 ++ 2.168223 14 1 13 14 6 TCGA-N1-A6IA-01A-12R-A32Q-07 NRIP1~AF127936.7 fusion "NRIP1," "AF127936.7," chr21~chr21 16437066 16230029 3 -- 1.098612 3 3 0 3 6 TCGA-N1-A6IA-01A-12R-A32Q-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 34 -+ 2.310022 21 0 21 21 36 TCGA-N1-A6IA-01A-12R-A32Q-07 Nchr12~24366277~SOX5 intergenic "-," "SOX5," chr12~chr12 24366277 24048958 4 -- 1.039721 4 4 0 4 2 TCGA-N1-A6IA-01A-12R-A32Q-07 Nchr12~91791491~DCN intergenic "-," "DCN," chr12~chr12 91791491 91572362 8 -- 2.079442 8 3 5 8 32 TCGA-N1-A6IA-01A-12R-A32Q-07 Nchr16~65209069~Nchr16~59203458 intergenic "-," "-," chr16~chr16 65209069 59203458 3 -- 1.098612 3 2 1 3 8 TCGA-N1-A6IA-01A-12R-A32Q-07 Nchr18~37115422~Nchr18~36788753 intergenic "-," "-," chr18~chr18 37115422 36788753 4 -- 1.386294 4 2 2 4 4 TCGA-N1-A6IA-01A-12R-A32Q-07 Nchr18~37331293~Nchr18~37115579 intergenic "-," "-," chr18~chr18 37331293 37115579 5 -- 1.609438 5 3 2 5 16 TCGA-N1-A6IA-01A-12R-A32Q-07 Nchr1~35816322~RPL5 intergenic "-," "RPL5," chr1~chr1 35816322 93297597 5 -+ 0.950271 4 0 4 4 4 TCGA-N1-A6IA-01A-12R-A32Q-07 Nchr1~75285200~LHX8 intergenic "-," "RP11-510C10.3,LHX8," chr1~chr1 75285200 75595911 3 ++ 1.098612 3 2 1 3 4 TCGA-N1-A6IA-01A-12R-A32Q-07 Nchr20~6549352~BMP2 intergenic "-," "BMP2," chr20~chr20 6549352 6758892 4 ++ 1.039721 4 3 1 4 2 TCGA-N1-A6IA-01A-12R-A32Q-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 4 ++ 1.386294 2 2 0 2 12 TCGA-N1-A6IA-01A-12R-A32Q-07 Nchr5~37948487~CTD-2116N24.1 intergenic "-," "CTD-2116N24.1," chr5~chr5 37948487 38183806 4 ++ 1.386294 4 3 1 4 12 TCGA-N1-A6IA-01A-12R-A32Q-07 Nchr6~8438264~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8438264 8784424 7 ++ 1.747868 7 6 1 7 10 TCGA-N1-A6IA-01A-12R-A32Q-07 NchrY~5661470~Nchr17~42624040 intergenic "-," "-," chrY~chr17 5661470 42624040 4 -- 1.386294 4 4 0 4 10 TCGA-N1-A6IA-01A-12R-A32Q-07 POLE4~Nchr2~75503636 intergenic "POLE4," "-," chr2~chr2 75187273 75503636 4 ++ 1.386294 3 3 0 3 10 TCGA-N1-A6IA-01A-12R-A32Q-07 PTENP1~Nchr10~90898132 intergenic "PTENP1," "-," chr9~chr10 33676486 90898132 2 -+ 0.693147 2 0 2 2 10 TCGA-N1-A6IA-01A-12R-A32Q-07 PTEN~Nchr10~90898132 intergenic "PTEN," "-," chr10~chr10 89653866 90898132 8 ++ 1.732868 8 4 4 8 26 TCGA-N1-A6IA-01A-12R-A32Q-07 RB1~MED4 fusion "RB1," "MED4," chr13~chr13 48881542 48660588 2 +- 0.693147 2 0 2 2 2 TCGA-N1-A6IA-01A-12R-A32Q-07 RB1~MED4 fusion "RB1," "MED4," chr13~chr13 48916850 48664554 31 +- 2.324736 27 4 23 27 82 TCGA-N1-A6IA-01A-12R-A32Q-07 RB1~Nchr13~32056835 intergenic "RB1," "-," chr13~chr13 48916850 32056835 2 +- 0.693147 2 1 1 2 16 TCGA-N1-A6IA-01A-12R-A32Q-07 RP11-14N7.2~FAM176A fusion "RP11-14N7.2," "FAM176A," chr1~chr2 148932920 75749613 12 +- 1.979205 7 4 3 7 10 TCGA-N1-A6IA-01A-12R-A32Q-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 2 ++ 0.693147 2 1 1 2 6 TCGA-N1-A6IA-01A-12R-A32Q-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 7 +- 1.549826 6 0 6 6 6 TCGA-N1-A6IA-01A-12R-A32Q-07 SERPINE2~NLGN4X fusion "SERPINE2," "NLGN4X," chr2~chrX 224903816 6069812 2 -- 0.693147 2 0 2 2 2 TCGA-N1-A6IA-01A-12R-A32Q-07 SKI~Nchr1~6976977 intergenic "SKI," "-," chr1~chr1 2234839 6976977 2 +- 0.693147 2 1 1 2 4 TCGA-N1-A6IA-01A-12R-A32Q-07 SMEK2~KYNU fusion "SMEK2," "KYNU," chr2~chr2 55842587 143642918 4 -+ 1.039721 4 2 2 4 4 TCGA-N1-A6IA-01A-12R-A32Q-07 SPARC~COL1A1 fusion "SPARC," "COL1A1," chr5~chr17 151051221 48277210 4 -- 1.039721 3 1 2 3 2 TCGA-N1-A6IA-01A-12R-A32Q-07 TNPO1~RP11-25C19.3 fusion "TNPO1," "RP11-25C19.3," chr5~chr10 72157741 114432527 46 +- 2.468885 45 16 29 45 166 TCGA-N1-A6IA-01A-12R-A32Q-07 TNPO1~ZNF366 fusion "TNPO1," "ZNF366," chr5~chr5 72157741 71757337 16 +- 2.512659 16 7 9 16 54 TCGA-N1-A6IA-01A-12R-A32Q-07 TRIM13~DLEU1 fusion "TRIM13," "DLEU1," chr13~chr13 50571899 51205413 14 ++ 2.106577 14 3 11 14 22 TCGA-N1-A6IA-01A-12R-A32Q-07 TRIM13~DLEU1 fusion "TRIM13," "DLEU1," chr13~chr13 50571899 51205416 2 ++ 0.693147 2 1 1 2 22 TCGA-N1-A6IA-01A-12R-A32Q-07 VTI1A~Nchr5~71815136 intergenic "VTI1A," "-," chr10~chr5 114224416 71815136 185 ++ 3.30594 183 108 75 183 314 TCGA-N1-A6IA-01A-12R-A32Q-07 ZNF366~RP11-25C19.3 fusion "ZNF366," "RP11-25C19.3," chr5~chr10 71755992 114432527 11 -- 1.594167 11 3 8 11 20 TCGA-DX-A1L4-01A-12R-A26T-07 ANO4~NTS fusion "ANO4," "NTS," chr12~chr12 101381448 86272123 26 ++ 2.791295 25 15 10 25 92 TCGA-DX-A1L4-01A-12R-A26T-07 ATP2B1~DCN fusion "ATP2B1," "DCN," chr12~chr12 90028555 91572362 3 -- 1.098612 2 1 1 2 16 TCGA-DX-A1L4-01A-12R-A26T-07 BEST1~ZNF90 fusion "BEST1,FTH1," "ZNF90," chr11~chr19 61732294 20236084 2 ++ 0.693147 2 1 1 2 2 TCGA-DX-A1L4-01A-12R-A26T-07 C6orf225~Nchr12~75209094 intergenic "C6orf225," "-," chr6~chr12 112418404 75209094 9 ++ 1.522955 9 3 6 9 12 TCGA-DX-A1L4-01A-12R-A26T-07 CDK19~CPM fusion "CDK19," "MDM2,CPM," chr6~chr12 110959852 69236109 24 -- 2.337052 4 4 0 4 6 TCGA-DX-A1L4-01A-12R-A26T-07 CDK19~CPM fusion "CDK19," "CPM," chr6~chr12 111067329 69265736 18 -- 2.260204 10 10 0 10 8 TCGA-DX-A1L4-01A-12R-A26T-07 CHD2~RP11-560G2.1 fusion "CHD2," "RP11-560G2.1," chr15~chr12 93555674 75688823 3 ++ 1.098612 3 1 2 3 8 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271491 94029544 10 -+ 0.897946 9 9 0 9 18 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264853 94034161 2 -+ 0.693147 2 1 1 2 30 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267220 94034985 3 -+ 1.098612 3 2 1 3 6 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273675 94047856 8 -+ 1.320888 5 5 0 5 26 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264880 94052342 5 -+ 0.500402 3 3 0 3 16 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271491 94054940 2 -+ 0.693147 2 1 1 2 14 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267904 94055152 7 -+ 1.747868 3 1 2 3 6 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48270001 94056590 2 -+ 0.693147 2 1 1 2 8 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48264845 189850446 3 -+ 1.098612 1 1 0 1 32 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48275530 189852817 2 -+ 0.693147 2 1 1 2 2 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266264 189856240 5 -+ 1.332179 5 3 2 5 50 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48273284 189858087 5 -+ 1.332179 3 3 0 3 30 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265237 189858764 9 -+ 1.464816 5 4 1 5 30 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48270158 189858960 124 -+ 0.129338 3 2 1 3 34 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272795 189859032 28 -+ 0.808447 28 28 0 28 120 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272966 189859274 2 -+ 0.693147 1 1 0 1 32 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48273539 189861896 7 -+ 0.682908 6 4 2 6 26 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268840 189862445 5 -+ 0.950271 4 0 4 4 16 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268836 189862999 10 -+ 1.220607 9 4 5 9 28 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48269149 189864196 3 -+ 1.098612 2 2 0 2 42 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268178 189864568 3 -+ 1.098612 3 1 2 3 86 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272601 189866123 3 -+ 1.098612 2 1 1 2 46 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272593 189867690 34 -+ 0.953328 28 28 0 28 66 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48264411 189868763 2 -+ 0.693147 1 1 0 1 32 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48264160 189870119 2 -+ 0.693147 2 1 1 2 66 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265237 189871089 3 -+ 1.098612 3 2 1 3 54 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48270188 189872275 4 -+ 1.386294 4 0 4 4 18 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A1~MMP1 fusion "COL1A1," "MMP1," chr17~chr11 48267075 102668158 4 -- 0.562335 2 0 2 2 4 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94053755 48266371 23 +- 0.837897 22 1 21 22 18 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94052430 48266636 4 +- 1.386294 2 2 0 2 30 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94053755 48273889 2 +- 0.693147 2 1 1 2 24 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94039750 48275353 2 +- 0.693147 2 1 1 2 6 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94034169 189856213 9 ++ 1.310784 9 3 6 9 10 TCGA-DX-A1L4-01A-12R-A26T-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94049598 189867024 3 ++ 1.098612 3 1 2 3 4 TCGA-DX-A1L4-01A-12R-A26T-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189867788 48264483 1 +- 0.693147 2 0 1 2 30 TCGA-DX-A1L4-01A-12R-A26T-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189869090 48267957 7 +- 0.796312 5 0 5 5 22 TCGA-DX-A1L4-01A-12R-A26T-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189857666 48271544 3 +- 0.636514 2 1 1 2 14 TCGA-DX-A1L4-01A-12R-A26T-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189868157 48275865 4 +- 1.386294 4 2 2 4 60 TCGA-DX-A1L4-01A-12R-A26T-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189870985 94047036 4 ++ 1.039721 4 3 1 4 6 TCGA-DX-A1L4-01A-12R-A26T-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189861142 94049545 2 ++ 0.693147 2 1 1 2 8 TCGA-DX-A1L4-01A-12R-A26T-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189868155 94052342 2 ++ 0.693147 1 1 0 1 6 TCGA-DX-A1L4-01A-12R-A26T-07 DCN~Nchr6~149297723 intergenic "DCN," "-," chr12~chr6 91558382 149297723 5 -- 1.609438 5 3 2 5 108 TCGA-DX-A1L4-01A-12R-A26T-07 DCN~Nchr6~149303187 intergenic "DCN," "-," chr12~chr6 91572119 149303187 6 -- 1.56071 6 2 4 6 702 TCGA-DX-A1L4-01A-12R-A26T-07 DCN~Nchr6~149303187 intergenic "DCN," "-," chr12~chr6 91558382 149303187 1339 -- 3.292029 1366 644 630 1366 4492 TCGA-DX-A1L4-01A-12R-A26T-07 DCN~Nchr6~149304482 intergenic "DCN," "-," chr12~chr6 91558382 149304482 90 -- 3.001767 87 38 49 87 4474 TCGA-DX-A1L4-01A-12R-A26T-07 DCN~Nchr6~149304555 intergenic "DCN," "-," chr12~chr6 91558382 149304555 14 -- 2.106577 13 6 7 13 3736 TCGA-DX-A1L4-01A-12R-A26T-07 DCN~Nchr6~149306906 intergenic "DCN," "-," chr12~chr6 91558382 149306906 22 -- 2.389557 22 10 12 22 4808 TCGA-DX-A1L4-01A-12R-A26T-07 FAM186A~IRAK4 fusion "FAM186A," "IRAK4," chr12~chr12 50724356 44165023 5 -+ 1.332179 5 1 4 5 6 TCGA-DX-A1L4-01A-12R-A26T-07 FBLN1~CDK19 fusion "FBLN1," "CDK19," chr22~chr6 45914667 111067404 13 +- 2.245035 5 3 2 5 8 TCGA-DX-A1L4-01A-12R-A26T-07 FBLN1~CDK19 fusion "FBLN1," "CDK19," chr22~chr6 45914667 111095140 8 +- 1.386294 6 1 5 6 12 TCGA-DX-A1L4-01A-12R-A26T-07 FBLN1~Nchr12~90526816 intergenic "FBLN1," "-," chr22~chr12 45914667 90526816 5 +- 1.05492 5 3 2 5 20 TCGA-DX-A1L4-01A-12R-A26T-07 FBLN1~Nchr12~90526994 intergenic "FBLN1," "-," chr22~chr12 45914667 90526994 2 +- 0.693147 2 1 1 2 2 TCGA-DX-A1L4-01A-12R-A26T-07 FRS2~RP11-560G2.1 fusion "FRS2," "RP11-560G2.1," chr12~chr12 69925836 75644273 60 ++ 3.024549 48 21 27 48 154 TCGA-DX-A1L4-01A-12R-A26T-07 FRS2~STAB2 fusion "FRS2," "STAB2," chr12~chr12 69864310 104042468 2 ++ 0.693147 2 2 0 2 20 TCGA-DX-A1L4-01A-12R-A26T-07 FRS2~THEMIS fusion "FRS2," "THEMIS," chr12~chr6 69880077 128040968 13 +- 2.204785 13 11 2 13 236 TCGA-DX-A1L4-01A-12R-A26T-07 FRS2~THEMIS fusion "FRS2," "THEMIS," chr12~chr6 69864310 128040968 67 +- 2.92025 63 44 19 63 238 TCGA-DX-A1L4-01A-12R-A26T-07 FYN~Nchr15~96834012 intergenic "FYN," "-," chr6~chr15 112194171 96834012 6 -- 1.791759 5 5 0 5 8 TCGA-DX-A1L4-01A-12R-A26T-07 GAS2L3~OS9 fusion "GAS2L3," "OS9," chr12~chr12 100995531 58109543 122 ++ 3.155142 114 62 52 114 244 TCGA-DX-A1L4-01A-12R-A26T-07 GRIP1~MYO1H fusion "GRIP1," "MYO1H," chr12~chr12 66747197 109893273 16 -+ 2.339372 16 7 9 16 78 TCGA-DX-A1L4-01A-12R-A26T-07 GRIP1~Nchr12~109893268 intergenic "GRIP1," "-," chr12~chr12 66747197 109893268 27 -+ 2.79498 27 9 18 27 78 TCGA-DX-A1L4-01A-12R-A26T-07 GTF2A2~Nchr12~88979497 intergenic "GTF2A2," "-," chr15~chr12 59942868 88979497 13 -- 2.138397 11 0 11 11 74 TCGA-DX-A1L4-01A-12R-A26T-07 GTF2A2~Nchr12~88979914 intergenic "GTF2A2," "-," chr15~chr12 59942868 88979914 6 -- 1.791759 6 4 2 6 6 TCGA-DX-A1L4-01A-12R-A26T-07 IFT81~Nchr12~59586798 intergenic "IFT81," "-," chr12~chr12 110618376 59586798 4 ++ 1.386294 4 1 3 4 6 TCGA-DX-A1L4-01A-12R-A26T-07 ITGA5~Nchr20~61263848 intergenic "ITGA5," "-," chr12~chr20 54794630 61263848 6 -+ 1.242453 6 1 5 6 12 TCGA-DX-A1L4-01A-12R-A26T-07 ITGA5~RP13-30A9.2 fusion "ITGA5," "RP13-30A9.1,RP13-30A9.2," chr12~chr20 54794630 61266850 3 -+ 1.098612 2 1 1 2 8 TCGA-DX-A1L4-01A-12R-A26T-07 KITLG~Nchr21~26734244 intergenic "KITLG," "-," chr12~chr21 88974041 26734244 3 -- 1.098612 3 2 1 3 6 TCGA-DX-A1L4-01A-12R-A26T-07 KITLG~ST8SIA6 fusion "KITLG," "ST8SIA6," chr12~chr10 88974041 17365156 3 -- 1.098612 3 0 3 3 6 TCGA-DX-A1L4-01A-12R-A26T-07 KITLG~ST8SIA6 fusion "KITLG," "ST8SIA6," chr12~chr10 88974041 17373551 14 -- 2.341994 13 6 7 13 12 TCGA-DX-A1L4-01A-12R-A26T-07 MDM2~Nchr15~59995524 intergenic "MDM2," "-," chr12~chr15 69210725 59995524 9 +- 1.889159 7 0 7 7 12 TCGA-DX-A1L4-01A-12R-A26T-07 METTL1~Nchr12~74995153 intergenic "METTL1," "-," chr12~chr12 58165757 74995153 2 -+ 0.693147 2 0 2 2 10 TCGA-DX-A1L4-01A-12R-A26T-07 MON2~RP11-24B21.1 fusion "MON2," "RP11-24B21.1," chr12~chr12 62949972 92387305 4 +- 1.386294 4 2 2 4 24 TCGA-DX-A1L4-01A-12R-A26T-07 MTHFD1L~IFT81 fusion "MTHFD1L," "IFT81," chr6~chr12 151198962 110600724 15 ++ 2.245952 14 7 7 14 52 TCGA-DX-A1L4-01A-12R-A26T-07 MTHFD1L~IFT81 fusion "MTHFD1L," "IFT81," chr6~chr12 151198962 110618227 5 ++ 1.05492 5 2 3 5 16 TCGA-DX-A1L4-01A-12R-A26T-07 MTHFD1L~Nchr12~88991725 intergenic "MTHFD1L," "-," chr6~chr12 151198962 88991725 6 ++ 1.56071 6 3 3 6 28 TCGA-DX-A1L4-01A-12R-A26T-07 NAV3~ANO4 fusion "NAV3," "ANO4," chr12~chr12 78362482 101235644 8 ++ 1.667462 8 6 2 8 12 TCGA-DX-A1L4-01A-12R-A26T-07 NAV3~ANO4 fusion "NAV3," "RP11-263E1.1,ANO4," chr12~chr12 78362482 101246146 15 ++ 2.211069 15 6 9 15 28 TCGA-DX-A1L4-01A-12R-A26T-07 NAV3~ANO4 fusion "NAV3," "ANO4," chr12~chr12 78362482 101295424 18 ++ 2.245172 18 8 10 18 68 TCGA-DX-A1L4-01A-12R-A26T-07 NAV3~Nchr12~101259767 intergenic "NAV3," "-," chr12~chr12 78362482 101259767 2 ++ 0.693147 2 0 2 2 2 TCGA-DX-A1L4-01A-12R-A26T-07 Nchr10~17333332~MTHFD1L intergenic "-," "MTHFD1L," chr10~chr6 17333332 151200091 5 -- 1.609438 5 1 4 5 18 TCGA-DX-A1L4-01A-12R-A26T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 21 -+ 2.177604 11 0 11 11 12 TCGA-DX-A1L4-01A-12R-A26T-07 Nchr12~67427146~WSCD2 intergenic "-," "WSCD2," chr12~chr12 67427146 108643956 5 -- 1.609438 4 3 1 4 6 TCGA-DX-A1L4-01A-12R-A26T-07 Nchr12~75010627~Nchr6~113735079 intergenic "-," "-," chr12~chr6 75010627 113735079 5 -- 1.332179 5 4 1 5 16 TCGA-DX-A1L4-01A-12R-A26T-07 Nchr12~81160599~BEST3 intergenic "-," "BEST3," chr12~chr12 81160599 70072673 5 +- 1.332179 4 4 0 4 6 TCGA-DX-A1L4-01A-12R-A26T-07 Nchr12~94461346~KCTD10 intergenic "-," "KCTD10," chr12~chr12 94461346 109901828 6 -- 1.791759 5 1 4 5 12 TCGA-DX-A1L4-01A-12R-A26T-07 Nchr12~94467247~KCTD10 intergenic "-," "KCTD10," chr12~chr12 94467247 109898610 4 -- 1.386294 2 1 1 2 10 TCGA-DX-A1L4-01A-12R-A26T-07 Nchr15~92072666~Nchr6~113053137 intergenic "-," "-," chr15~chr6 92072666 113053137 2 -- 0.693147 2 0 2 2 6 TCGA-DX-A1L4-01A-12R-A26T-07 Nchr15~92072666~Nchr6~114692756 intergenic "-," "-," chr15~chr6 92072666 114692756 3 -+ 1.098612 2 2 0 2 10 TCGA-DX-A1L4-01A-12R-A26T-07 Nchr15~96826061~Nchr6~110845200 intergenic "-," "-," chr15~chr6 96826061 110845200 6 -- 1.242453 6 3 3 6 8 TCGA-DX-A1L4-01A-12R-A26T-07 Nchr15~96826061~SLC22A16 intergenic "-," "SLC22A16," chr15~chr6 96826061 110778220 3 -- 0.636514 3 1 2 3 4 TCGA-DX-A1L4-01A-12R-A26T-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 11 -+ 1.893788 11 5 6 11 106 TCGA-DX-A1L4-01A-12R-A26T-07 Nchr22~46468528~CDK19 intergenic "-," "CDK19," chr22~chr6 46468528 110959909 12 +- 1.979205 1 1 0 1 6 TCGA-DX-A1L4-01A-12R-A26T-07 Nchr5~155108550~SGCD intergenic "-," "SGCD," chr5~chr5 155108550 155550866 2 ++ 0.693147 2 1 1 2 2 TCGA-DX-A1L4-01A-12R-A26T-07 Nchr6~111365759~CPM intergenic "-," "CPM," chr6~chr12 111365759 69265736 5 +- 1.609438 4 3 1 4 8 TCGA-DX-A1L4-01A-12R-A26T-07 Nchr6~111806064~GRIP1 intergenic "-," "GRIP1," chr6~chr12 111806064 66761716 4 ++ 1.386294 4 3 1 4 4 TCGA-DX-A1L4-01A-12R-A26T-07 Nchr6~96206255~Nchr12~67829296 intergenic "-," "-," chr6~chr12 96206255 67829296 3 -- 1.098612 2 1 1 2 10 TCGA-DX-A1L4-01A-12R-A26T-07 OSBPL8~FAM186A fusion "OSBPL8," "FAM186A," chr12~chr12 76953177 50727886 40 -- 2.638256 36 25 11 36 96 TCGA-DX-A1L4-01A-12R-A26T-07 PLXDC2~GRIP1 fusion "PLXDC2," "GRIP1," chr10~chr12 20106120 66814569 5 +- 1.609438 4 1 3 4 16 TCGA-DX-A1L4-01A-12R-A26T-07 PLXNC1~Nchr6~113843777 intergenic "PLXNC1," "-," chr12~chr6 94580249 113843777 44 +- 3.074981 42 24 18 42 198 TCGA-DX-A1L4-01A-12R-A26T-07 PTPRR~CPM fusion "PTPRR," "CPM," chr12~chr12 71077907 69265736 3 -- 0.636514 3 2 1 3 20 TCGA-DX-A1L4-01A-12R-A26T-07 R3HDM2~KCNC2 fusion "R3HDM2," "KCNC2," chr12~chr12 57789532 75586078 98 -- 3.11405 89 24 65 89 244 TCGA-DX-A1L4-01A-12R-A26T-07 R3HDM2~Nchr12~90488213 intergenic "R3HDM2," "-," chr12~chr12 57824503 90488213 9 -+ 1.676988 9 0 9 9 6 TCGA-DX-A1L4-01A-12R-A26T-07 R3HDM2~Nchr12~90494480 intergenic "R3HDM2," "-," chr12~chr12 57824503 90494480 4 -+ 1.386294 4 0 4 4 2 TCGA-DX-A1L4-01A-12R-A26T-07 R3HDM2~SASH1 fusion "R3HDM2," "SASH1," chr12~chr6 57789532 148867151 45 -+ 2.891953 42 9 33 42 42 TCGA-DX-A1L4-01A-12R-A26T-07 RAB11A~Nchr12~47364762 intergenic "RAB11A," "-," chr15~chr12 66161963 47364762 3 ++ 1.098612 2 2 0 2 12 TCGA-DX-A1L4-01A-12R-A26T-07 REV3L~Nchr12~44204958 intergenic "REV3L," "-," chr6~chr12 111643772 44204958 4 -+ 1.609438 5 2 2 5 24 TCGA-DX-A1L4-01A-12R-A26T-07 REV3L~TMEM117 fusion "REV3L," "TMEM117," chr6~chr12 111643772 44238427 5 -+ 1.609438 5 1 4 5 18 TCGA-DX-A1L4-01A-12R-A26T-07 RORA~Nchr8~31737043 intergenic "RORA," "-," chr15~chr8 60884586 31737043 8 -- 1.667462 7 4 3 7 18 TCGA-DX-A1L4-01A-12R-A26T-07 RP11-123O10.4~CAPS2 fusion "RP11-123O10.4," "CAPS2," chr12~chr12 67462830 75698656 3 -- 1.098612 3 3 0 3 18 TCGA-DX-A1L4-01A-12R-A26T-07 RP11-123O10.4~GRIP1 fusion "RP11-123O10.4," "GRIP1," chr12~chr12 67462830 66814569 23 -- 2.36671 23 18 5 23 60 TCGA-DX-A1L4-01A-12R-A26T-07 RP11-123O10.4~NR1H4 fusion "RP11-123O10.4," "NR1H4," chr12~chr12 67462830 100934450 5 -+ 0.950271 5 5 0 5 8 TCGA-DX-A1L4-01A-12R-A26T-07 RP11-54A9.1~Nchr12~92873078 intergenic "RP11-54A9.1," "-," chr12~chr12 76653761 92873078 56 +- 3.048635 55 23 31 55 88 TCGA-DX-A1L4-01A-12R-A26T-07 RP3-402G11.5~GRIP1 fusion "RP3-402G11.5," "GRIP1," chr22~chr12 50640019 66800208 6 +- 1.56071 6 4 2 6 12 TCGA-DX-A1L4-01A-12R-A26T-07 RPF2~USP3 fusion "RPF2," "USP3," chr6~chr15 111318467 63824846 3 ++ 1.098612 3 2 1 3 4 TCGA-DX-A1L4-01A-12R-A26T-07 RSU1~FANCI fusion "RSU1," "FANCI," chr10~chr15 16858972 89816608 11 -+ 2.271869 11 6 5 11 28 TCGA-DX-A1L4-01A-12R-A26T-07 SASH1~STAB2 fusion "SASH1," "STAB2," chr6~chr12 148867282 104152911 22 ++ 2.082828 19 16 3 19 26 TCGA-DX-A1L4-01A-12R-A26T-07 SLC38A4~TSFM fusion "SLC38A4," "TSFM,RP11-571M6.15,TSFM,RP11-571M6.15,TSFM," chr12~chr12 47173394 58179946 17 -+ 2.15006 16 8 8 16 46 TCGA-DX-A1L4-01A-12R-A26T-07 SPARC~COL1A1 fusion "SPARC," "COL1A1," chr5~chr17 151043028 48271544 3 -- 1.098612 3 2 1 3 6 TCGA-DX-A1L4-01A-12R-A26T-07 SSH1~Nchr12~90744479 intergenic "SSH1," "-," chr12~chr12 109245582 90744479 3 -+ 1.098612 3 0 3 3 122 TCGA-DX-A1L4-01A-12R-A26T-07 SSH1~Nchr12~90744479 intergenic "SSH1," "-," chr12~chr12 109245601 90744479 8 -+ 1.732868 8 3 5 8 120 TCGA-DX-A1L4-01A-12R-A26T-07 SSH1~Nchr12~90744479 intergenic "SSH1," "-," chr12~chr12 109246414 90744479 30 -+ 2.479905 30 17 13 30 100 TCGA-DX-A1L4-01A-12R-A26T-07 STAM~EPYC fusion "STAM," "EPYC," chr10~chr12 17686378 91372039 22 +- 2.536221 22 14 8 22 44 TCGA-DX-A1L4-01A-12R-A26T-07 TBK1~CDK19 fusion "TBK1," "CDK19," chr12~chr6 64879293 110935869 25 +- 2.199814 25 14 11 25 56 TCGA-DX-A1L4-01A-12R-A26T-07 TBK1~Nchr12~55437661 intergenic "TBK1," "-," chr12~chr12 64879293 55437661 31 +- 2.712563 31 12 19 31 120 TCGA-DX-A1L4-01A-12R-A26T-07 TBK1~Nchr12~90984371 intergenic "TBK1," "-," chr12~chr12 64879293 90984371 4 ++ 1.386294 4 3 1 4 2 TCGA-DX-A1L4-01A-12R-A26T-07 TBK1~Nchr12~90987346 intergenic "TBK1," "-," chr12~chr12 64879293 90987346 15 ++ 2.245952 15 9 6 15 34 TCGA-DX-A1L4-01A-12R-A26T-07 TCHP~GLIPR1L1 fusion "TCHP," "GLIPR1L1," chr12~chr12 110342598 75763257 8 ++ 2.079442 8 4 4 8 2 TCGA-DX-A1L4-01A-12R-A26T-07 TMEM116~Nchr12~77622777 intergenic "TMEM116," "-," chr12~chr12 112371690 77622777 6 -- 1.791759 5 3 2 5 22 TCGA-DX-A1L4-01A-12R-A26T-07 TMEM116~Nchr12~77622862 intergenic "TMEM116," "-," chr12~chr12 112371690 77622862 6 -- 1.242453 6 4 2 6 40 TCGA-DX-A1L4-01A-12R-A26T-07 TMEM117~Nchr12~57152977 intergenic "TMEM117," "-," chr12~chr12 44238731 57152977 31 +- 2.757282 30 13 17 30 488 TCGA-DX-A1L4-01A-12R-A26T-07 TMEM117~Nchr12~57152977 intergenic "TMEM117," "-," chr12~chr12 44238458 57152977 4 +- 1.386294 4 1 3 4 8 TCGA-DX-A1L4-01A-12R-A26T-07 TMEM117~Nchr12~57152989 intergenic "TMEM117," "-," chr12~chr12 44238731 57152989 173 +- 3.093133 170 77 93 170 504 TCGA-DX-A1L4-01A-12R-A26T-07 TMEM117~PRIM1 fusion "TMEM117," "PRIM1," chr12~chr12 44238731 57144979 9 +- 1.889159 9 2 7 9 16 TCGA-DX-A1L4-01A-12R-A26T-07 TMTC2~HERC1 fusion "TMTC2," "HERC1," chr12~chr15 83081448 63956793 6 +- 1.791759 5 4 1 5 8 TCGA-DX-A1L4-01A-12R-A26T-07 TMTC2~PTPRR fusion "TMTC2," "PTPRR," chr12~chr12 83081448 71286757 2 +- 0.693147 2 2 0 2 6 TCGA-DX-A1L4-01A-12R-A26T-07 TMTC2~PTPRR fusion "TMTC2," "PTPRR," chr12~chr12 83081448 71314347 6 +- 1.791759 5 1 4 5 6 TCGA-DX-A1L4-01A-12R-A26T-07 TSFM~Nchr15~63601935 intergenic "TSFM," "-," chr12~chr15 58180945 63601935 4 +- 1.386294 4 1 3 4 16 TCGA-DX-A1L4-01A-12R-A26T-07 TUBA1C~NT5DC3 fusion "TUBA1C,RP11-161H23.5," "NT5DC3," chr12~chr12 49658967 104165107 22 +- 2.8944 21 3 17 21 110 TCGA-DX-A1L4-01A-12R-A26T-07 TUBA1C~Nchr12~77622777 intergenic "TUBA1C,RP11-161H23.5," "-," chr12~chr12 49658967 77622777 2 +- 0.693147 2 0 2 2 16 TCGA-DX-A1L4-01A-12R-A26T-07 TUBA1C~TMEM116 fusion "TUBA1C,RP11-161H23.5," "TMEM116," chr12~chr12 49658967 112371834 3 +- 1.098612 3 0 3 3 8 TCGA-DX-A1L4-01A-12R-A26T-07 TUBA1C~TMEM116 fusion "TUBA1C,RP11-161H23.5," "TMEM116," chr12~chr12 49658967 112376014 6 +- 1.791759 6 0 6 6 20 TCGA-DX-A1L4-01A-12R-A26T-07 TUBA1C~TMEM116 fusion "TUBA1C,RP11-161H23.5," "TMEM116," chr12~chr12 49658967 112381173 11 +- 2.145842 10 4 6 10 28 TCGA-DX-A1L4-01A-12R-A26T-07 USP30~STAB2 fusion "USP30," "STAB2," chr12~chr12 109509515 104134408 3 ++ 0.636514 3 0 3 3 4 TCGA-DX-A1L4-01A-12R-A26T-07 USP3~Nchr15~92072769 intergenic "USP3," "-," chr15~chr15 63797029 92072769 17 +- 2.15006 12 7 5 12 16 TCGA-DX-A1L4-01A-12R-A26T-07 ZDHHC17~C10orf112 fusion "ZDHHC17," "C10orf112," chr12~chr10 77158109 19546613 5 ++ 1.609438 3 3 0 3 10 TCGA-DX-A1L4-01A-12R-A26T-07 ZDHHC17~C12orf26 fusion "ZDHHC17," "C12orf26," chr12~chr12 77216311 82870423 5 ++ 1.609438 5 2 3 5 12 TCGA-DX-A1L4-01A-12R-A26T-07 ZDHHC17~Nchr12~90478624 intergenic "ZDHHC17," "-," chr12~chr12 77158109 90478624 49 +- 2.539707 48 2 46 48 208 TCGA-DX-A240-01A-32R-A27Q-07 ABCC9~VDR fusion "ABCC9," "VDR," chr12~chr12 22001084 48300806 9 -- 2.043192 9 7 2 9 12 TCGA-DX-A240-01A-32R-A27Q-07 ADIPOR2~SLC2A13 fusion "ADIPOR2," "SLC2A13," chr12~chr12 1863680 40442012 28 +- 2.768901 26 16 10 26 108 TCGA-DX-A240-01A-32R-A27Q-07 ATF6~Nchr1~162956654 intergenic "ATF6," "-," chr1~chr1 161882170 162956654 3 +- 0.636514 1 1 0 1 6 TCGA-DX-A240-01A-32R-A27Q-07 BCAT1~Nchr12~57203315 intergenic "BCAT1," "-," chr12~chr12 25101861 57203315 50 -- 2.76319 50 21 29 50 224 TCGA-DX-A240-01A-32R-A27Q-07 BICD1~Nchr12~58087086 intergenic "BICD1," "-," chr12~chr12 32487601 58087086 3 ++ 1.098612 3 2 1 3 8 TCGA-DX-A240-01A-32R-A27Q-07 BICD1~Nchr12~58087515 intergenic "BICD1," "-," chr12~chr12 32487601 58087515 6 ++ 0.693147 6 3 3 6 10 TCGA-DX-A240-01A-32R-A27Q-07 C12orf5~CRP fusion "C12orf5," "CRP," chr12~chr1 4430469 159684318 9 +- 1.522955 9 9 0 9 18 TCGA-DX-A240-01A-32R-A27Q-07 C12orf5~Nchr1~159684482 intergenic "C12orf5," "-," chr12~chr1 4430469 159684482 4 +- 0.562335 4 4 0 4 18 TCGA-DX-A240-01A-32R-A27Q-07 C12orf5~Nchr1~159684629 intergenic "C12orf5," "-," chr12~chr1 4430469 159684629 2 +- 0.693147 2 1 1 2 2 TCGA-DX-A240-01A-32R-A27Q-07 CALD1~Nchr7~132918735 intergenic "CALD1," "-," chr7~chr7 134464500 132918735 14 ++ 2.341994 12 6 6 12 58 TCGA-DX-A240-01A-32R-A27Q-07 CD63~COL1A1 fusion "CD63," "COL1A1," chr12~chr17 56119349 48268279 8 -- 0.735622 8 1 7 8 8 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264845 94034511 2 -+ 0.693147 1 1 0 1 14 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273675 94037648 3 -+ 1.098612 2 2 0 2 22 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267078 94039561 8 -+ 0.735622 5 5 0 5 38 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273978 94043002 2 -+ 0.693147 2 0 2 2 28 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48270169 94043541 2 -+ 0.693147 1 1 0 1 118 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94047036 57 -+ 0.655441 55 54 1 55 142 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48268779 94048829 2 -+ 0.693147 2 2 0 2 124 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48276596 94052389 2 -+ 0.693147 1 1 0 1 22 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272593 94054429 14 -+ 0.994354 10 10 0 10 58 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48275104 94055150 3 -+ 0.636514 1 1 0 1 12 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272410 94055769 2 -+ 0.693147 1 0 1 1 22 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48264050 189850391 3 -+ 1.098612 3 2 1 3 10 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266264 189856240 8 -+ 1.213008 7 6 1 7 82 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268178 189858087 4 -+ 1.039721 4 2 2 4 24 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48269149 189858087 5 -+ 0.950271 4 3 1 4 14 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48271934 189858960 15 -+ 1.32295 10 8 2 10 14 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48270158 189858960 7 -+ 1.153742 7 6 1 7 24 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272795 189859032 40 -+ 0.643606 36 36 0 36 42 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48271934 189860418 3 -+ 1.098612 2 1 1 2 24 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266738 189861891 17 -+ 1.34379 2 0 2 2 88 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48269149 189864196 2 -+ 0.693147 2 1 1 2 62 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48273284 189864196 2 -+ 0.693147 1 0 1 1 44 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266755 189864587 3 -+ 1.098612 1 1 0 1 114 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266529 189870076 3 -+ 0.636514 2 1 1 2 124 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48271790 189870095 48 -+ 0.742023 44 43 1 44 62 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266103 189871071 5 -+ 1.332179 3 2 1 3 38 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266800 189871126 2 -+ 0.693147 2 1 1 2 56 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265891 189872611 7 -+ 0.796312 1 0 1 1 18 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48263819 189874954 2 -+ 0.693147 1 1 0 1 38 TCGA-DX-A240-01A-32R-A27Q-07 COL1A1~SPARC fusion "COL1A1," "SPARC," chr17~chr5 48261662 151047159 2 -- 0.693147 2 1 1 2 16 TCGA-DX-A240-01A-32R-A27Q-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049598 48265998 6 +- 1.791759 4 0 4 4 86 TCGA-DX-A240-01A-32R-A27Q-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94054536 48266156 7 +- 0.410116 6 0 6 6 88 TCGA-DX-A240-01A-32R-A27Q-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94034204 48270211 2 +- 0.693147 2 1 1 2 10 TCGA-DX-A240-01A-32R-A27Q-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94055161 48270211 18 +- 1.873511 17 1 16 17 350 TCGA-DX-A240-01A-32R-A27Q-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94035615 48272461 7 +- 1.277034 5 0 5 5 50 TCGA-DX-A240-01A-32R-A27Q-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48273560 5 +- 1.609438 4 1 3 4 228 TCGA-DX-A240-01A-32R-A27Q-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94056373 48273889 2 +- 0.693147 1 0 1 1 126 TCGA-DX-A240-01A-32R-A27Q-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94045815 48273889 122 +- 1.081295 120 1 119 120 130 TCGA-DX-A240-01A-32R-A27Q-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94054471 189858764 2 ++ 0.693147 2 1 1 2 18 TCGA-DX-A240-01A-32R-A27Q-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94049756 189864196 6 ++ 1.791759 5 3 2 5 52 TCGA-DX-A240-01A-32R-A27Q-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94047050 189867030 4 ++ 1.039721 4 1 3 4 30 TCGA-DX-A240-01A-32R-A27Q-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94047047 189868137 4 ++ 1.039721 2 0 2 2 16 TCGA-DX-A240-01A-32R-A27Q-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94049756 189868460 17 ++ 1.299742 15 1 14 15 50 TCGA-DX-A240-01A-32R-A27Q-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189858808 48264483 7 +- 1.549826 4 2 2 4 22 TCGA-DX-A240-01A-32R-A27Q-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870985 48265281 2 +- 0.693147 2 1 1 2 40 TCGA-DX-A240-01A-32R-A27Q-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189864303 48265317 2 +- 0.693147 1 0 1 1 20 TCGA-DX-A240-01A-32R-A27Q-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189871716 48265510 21 +- 1.608395 20 0 20 20 66 TCGA-DX-A240-01A-32R-A27Q-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870985 48265998 12 +- 2.094729 9 2 7 9 64 TCGA-DX-A240-01A-32R-A27Q-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189869090 48267957 20 +- 1.102429 17 2 15 17 46 TCGA-DX-A240-01A-32R-A27Q-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189859825 48271808 5 +- 1.05492 4 0 4 4 26 TCGA-DX-A240-01A-32R-A27Q-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870183 48272839 17 +- 0.443757 17 0 17 17 48 TCGA-DX-A240-01A-32R-A27Q-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189857666 48273026 9 +- 1.889159 7 7 0 7 16 TCGA-DX-A240-01A-32R-A27Q-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189858808 48275566 5 +- 1.332179 2 0 2 2 18 TCGA-DX-A240-01A-32R-A27Q-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189871708 94039751 3 ++ 0.636514 3 2 1 3 14 TCGA-DX-A240-01A-32R-A27Q-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189864303 94047811 2 ++ 0.693147 1 0 1 1 44 TCGA-DX-A240-01A-32R-A27Q-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189861142 94049718 13 ++ 0.271189 12 11 1 12 14 TCGA-DX-A240-01A-32R-A27Q-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189859058 94049853 3 ++ 1.098612 3 1 2 3 8 TCGA-DX-A240-01A-32R-A27Q-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189867077 94053648 3 ++ 1.098612 1 0 1 1 40 TCGA-DX-A240-01A-32R-A27Q-07 COL5A1~COL1A1 fusion "COL5A1," "COL1A1," chr9~chr17 137644491 48264483 2 +- 0.693147 2 0 2 2 4 TCGA-DX-A240-01A-32R-A27Q-07 COL6A2~COL1A2 fusion "COL6A2," "COL1A2," chr21~chr7 47535932 94053667 9 ++ 1.427061 7 3 4 7 2 TCGA-DX-A240-01A-32R-A27Q-07 COL6A2~COL3A1 fusion "COL6A2," "COL3A1," chr21~chr2 47532491 189876354 2 ++ 0.693147 2 2 0 2 2 TCGA-DX-A240-01A-32R-A27Q-07 CPM~Nchr12~25150525 intergenic "CPM," "-," chr12~chr12 69346624 25150525 40 +- 2.683138 38 16 22 38 46 TCGA-DX-A240-01A-32R-A27Q-07 CPNE8~PRMT8 fusion "CPNE8," "PRMT8," chr12~chr12 39266806 3647534 4 -+ 1.386294 4 3 1 4 2 TCGA-DX-A240-01A-32R-A27Q-07 CPNE8~PRMT8 fusion "CPNE8," "PRMT8," chr12~chr12 39266806 3649772 4 -+ 1.039721 4 2 2 4 6 TCGA-DX-A240-01A-32R-A27Q-07 DCAF6~UFC1 fusion "DCAF6," "UFC1,RP11-297K8.2,UFC1," chr1~chr1 167921099 161123716 41 ++ 2.640311 38 27 11 38 108 TCGA-DX-A240-01A-32R-A27Q-07 DNM3~KERA fusion "DNM3," "KERA," chr1~chr12 172357949 91451571 5 +- 1.332179 5 4 1 5 10 TCGA-DX-A240-01A-32R-A27Q-07 FAR2~Nchr12~28960648 intergenic "FAR2," "-," chr12~chr12 29423571 28960648 6 ++ 1.011404 6 3 3 6 6 TCGA-DX-A240-01A-32R-A27Q-07 FAR2~Nchr12~28975206 intergenic "FAR2," "-," chr12~chr12 29302340 28975206 11 +- 1.168518 11 3 8 11 20 TCGA-DX-A240-01A-32R-A27Q-07 FAR2~Nchr12~29012714 intergenic "FAR2," "-," chr12~chr12 29302340 29012714 2 +- 0.693147 2 1 1 2 26 TCGA-DX-A240-01A-32R-A27Q-07 FAR2~Nchr12~29048449 intergenic "FAR2," "-," chr12~chr12 29302340 29048449 13 +- 2.205598 12 3 8 12 48 TCGA-DX-A240-01A-32R-A27Q-07 HACE1~RP11-545D19.1 fusion "HACE1," "RP11-545D19.1," chr6~chrX 105280917 34224934 12 -- 2.253858 12 7 5 12 48 TCGA-DX-A240-01A-32R-A27Q-07 HLA-B~Nchr6~29902006 intergenic "HLA-B," "-," chr6~chr6 31323352 29902006 2 ++ 0.693147 1 1 0 1 36 TCGA-DX-A240-01A-32R-A27Q-07 IL1RAPL1~KERA fusion "IL1RAPL1," "KERA," chrX~chr12 29686621 91450066 7 +- 1.549826 4 3 1 4 224 TCGA-DX-A240-01A-32R-A27Q-07 IL1RAPL1~KERA fusion "IL1RAPL1," "KERA," chrX~chr12 28606164 91451571 2 +- 0.693147 2 2 0 2 512 TCGA-DX-A240-01A-32R-A27Q-07 IL1RAPL1~KERA fusion "IL1RAPL1," "KERA," chrX~chr12 29686621 91451571 485 +- 3.230136 250 240 4 250 434 TCGA-DX-A240-01A-32R-A27Q-07 KCTD7~Nchr7~65503163 intergenic "KCTD7,RABGEF1,KCTD7," "-," chr7~chr7 66205779 65503163 30 +- 2.560998 14 14 0 14 8 TCGA-DX-A240-01A-32R-A27Q-07 KIAA0528~VDR fusion "KIAA0528," "VDR," chr12~chr12 22643057 48300806 24 -- 2.787876 24 9 15 24 50 TCGA-DX-A240-01A-32R-A27Q-07 KIAA0528~VDR fusion "KIAA0528," "VDR," chr12~chr12 22643057 48307148 6 -- 1.791759 6 2 4 6 60 TCGA-DX-A240-01A-32R-A27Q-07 KIAA0528~VDR fusion "KIAA0528," "VDR," chr12~chr12 22643057 48315062 4 -- 1.039721 4 3 1 4 10 TCGA-DX-A240-01A-32R-A27Q-07 KIRREL~GUCY2C fusion "KIRREL," "GUCY2C,RP11-695J4.2," chr1~chr12 157963518 14765813 24 ++ 2.532525 24 0 23 24 108 TCGA-DX-A240-01A-32R-A27Q-07 KIRREL~GUCY2C fusion "KIRREL," "GUCY2C,RP11-695J4.2," chr1~chr12 157963518 14765817 2 ++ 0.693147 2 0 2 2 110 TCGA-DX-A240-01A-32R-A27Q-07 KIRREL~RP11-695J4.2 fusion "KIRREL," "RP11-695J4.2," chr1~chr12 157963518 14772086 10 ++ 2.163956 10 1 9 10 40 TCGA-DX-A240-01A-32R-A27Q-07 LRRK2~Nchr1~172216386 intergenic "LRRK2," "-," chr12~chr1 40626185 172216386 15 +- 2.245952 14 12 2 14 48 TCGA-DX-A240-01A-32R-A27Q-07 MDH2~FGL2 fusion "MDH2," "FGL2," chr7~chr7 75677544 76826302 2 +- 0.693147 2 1 1 2 8 TCGA-DX-A240-01A-32R-A27Q-07 MDM2~SLAMF9 fusion "MDM2," "SLAMF9," chr12~chr1 69230529 159923443 20 +- 2.553682 18 8 10 18 24 TCGA-DX-A240-01A-32R-A27Q-07 NHS~F11R fusion "NHS," "F11R," chrX~chr1 17394445 160971143 13 +- 2.351673 13 10 3 13 52 TCGA-DX-A240-01A-32R-A27Q-07 NIT1~C12orf5 fusion "NIT1," "C12orf5," chr1~chr12 161090022 4458985 5 ++ 0.950271 5 4 1 5 8 TCGA-DX-A240-01A-32R-A27Q-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 77 -+ 2.517409 35 0 35 35 32 TCGA-DX-A240-01A-32R-A27Q-07 Nchr12~14772850~Nchr1~168838215 intergenic "-," "-," chr12~chr1 14772850 168838215 6 ++ 1.791759 6 4 2 6 8 TCGA-DX-A240-01A-32R-A27Q-07 Nchr12~28751648~DNM3 intergenic "-," "DNM3," chr12~chr1 28751648 172001542 10 -+ 2.163956 8 6 2 8 72 TCGA-DX-A240-01A-32R-A27Q-07 Nchr12~28753486~DNM3 intergenic "-," "DNM3," chr12~chr1 28753486 172001542 9 -+ 2.043192 7 7 0 7 42 TCGA-DX-A240-01A-32R-A27Q-07 Nchr12~46864045~IFNG intergenic "-," "IFNG," chr12~chr12 46864045 68549267 4 +- 1.386294 2 1 1 2 4 TCGA-DX-A240-01A-32R-A27Q-07 Nchr12~69409415~Nchr12~87319528 intergenic "-," "-," chr12~chr12 69409415 87319528 4 ++ 1.039721 4 2 2 4 4 TCGA-DX-A240-01A-32R-A27Q-07 Nchr12~69801054~ST8SIA1 intergenic "-," "ST8SIA1," chr12~chr12 69801054 22354490 2 ++ 0.693147 2 1 1 2 6 TCGA-DX-A240-01A-32R-A27Q-07 Nchr12~87120986~Nchr1~159696317 intergenic "-," "-," chr12~chr1 87120986 159696317 13 -+ 2.098147 4 4 0 4 2 TCGA-DX-A240-01A-32R-A27Q-07 Nchr12~87232443~Nchr1~159696317 intergenic "-," "-," chr12~chr1 87232443 159696317 2 -+ 0.693147 2 1 1 2 40 TCGA-DX-A240-01A-32R-A27Q-07 Nchr1~158854386~PRRC2C intergenic "-," "PRRC2C," chr1~chr1 158854386 171509603 8 -- 1.494175 8 7 1 8 20 TCGA-DX-A240-01A-32R-A27Q-07 Nchr21~9827008~Nchr21~9827178 intergenic "-," "-," chr21~chr21 9827008 9827178 2 -- 0.693147 2 2 0 2 34 TCGA-DX-A240-01A-32R-A27Q-07 Nchr6~151546858~RPS12 intergenic "-," "RPS12," chr6~chr6 151546858 133138099 7 ++ 1.747868 2 1 1 2 132 TCGA-DX-A240-01A-32R-A27Q-07 Nchr6~153603718~Nchr6~153603857 intergenic "-," "-," chr6~chr6 153603718 153603857 2 -- 0.693147 1 0 1 1 12 TCGA-DX-A240-01A-32R-A27Q-07 Nchr7~122851462~Nchr7~123096679 intergenic "-," "-," chr7~chr7 122851462 123096679 2 ++ 0.693147 2 1 1 2 2 TCGA-DX-A240-01A-32R-A27Q-07 Nchr7~122851497~Nchr7~123096679 intergenic "-," "-," chr7~chr7 122851497 123096679 16 ++ 2.187322 16 4 12 16 78 TCGA-DX-A240-01A-32R-A27Q-07 Nchr7~124675277~AC008038.1 intergenic "-," "AC008038.1," chr7~chr7 124675277 132719582 4 -- 1.039721 4 0 4 4 2 TCGA-DX-A240-01A-32R-A27Q-07 Nchr7~93996521~Nchr7~93759288 intergenic "-," "-," chr7~chr7 93996521 93759288 2 -- 0.693147 2 2 0 2 4 TCGA-DX-A240-01A-32R-A27Q-07 Nchr9~20301224~Nchr9~20004385 intergenic "-," "-," chr9~chr9 20301224 20004385 10 -- 1.834372 7 5 2 7 22 TCGA-DX-A240-01A-32R-A27Q-07 Nchr9~28947816~LINGO2 intergenic "-," "LINGO2," chr9~chr9 28947816 28670278 16 -- 1.840749 2 1 1 2 2 TCGA-DX-A240-01A-32R-A27Q-07 NchrX~24096721~NchrX~24096820 intergenic "-," "-," chrX~chrX 24096721 24096820 2 -- 0.693147 2 2 0 2 4 TCGA-DX-A240-01A-32R-A27Q-07 NchrX~27655526~Nchr6~94737877 intergenic "-," "-," chrX~chr6 27655526 94737877 3 -- 0.636514 3 3 0 3 14 TCGA-DX-A240-01A-32R-A27Q-07 NchrX~36982319~NchrX~36698022 intergenic "-," "-," chrX~chrX 36982319 36698022 14 -- 2.044931 13 7 6 13 66 TCGA-DX-A240-01A-32R-A27Q-07 NchrX~64295792~NchrX~64586518 intergenic "-," "-," chrX~chrX 64295792 64586518 3 ++ 1.098612 2 1 1 2 2 TCGA-DX-A240-01A-32R-A27Q-07 OLFML2B~Nchr12~17227224 intergenic "OLFML2B," "-," chr1~chr12 161987190 17227224 3 -+ 1.098612 3 0 3 3 4 TCGA-DX-A240-01A-32R-A27Q-07 OS9~CD48 fusion "OS9," "CD48," chr12~chr1 58090156 160651258 29 +- 2.488794 29 8 21 29 46 TCGA-DX-A240-01A-32R-A27Q-07 PFDN2~Nchr12~17299924 intergenic "PFDN2," "-," chr1~chr12 161087742 17299924 4 -- 1.039721 3 1 2 3 8 TCGA-DX-A240-01A-32R-A27Q-07 PFDN2~Nchr12~17309808 intergenic "PFDN2," "-," chr1~chr12 161087742 17309808 2 -- 0.693147 2 0 2 2 8 TCGA-DX-A240-01A-32R-A27Q-07 PIGC~KERA fusion "PIGC," "KERA," chr1~chr12 172413128 91450066 4 -- 1.039721 3 0 3 3 200 TCGA-DX-A240-01A-32R-A27Q-07 PIGC~KERA fusion "PIGC," "KERA," chr1~chr12 172413128 91451571 62 -- 2.98005 59 12 47 59 382 TCGA-DX-A240-01A-32R-A27Q-07 PIGC~KERA fusion "PIGC," "KERA," chr1~chr12 172411892 91451571 21 -- 2.384382 21 15 6 21 378 TCGA-DX-A240-01A-32R-A27Q-07 PIGC~KERA fusion "PIGC," "KERA," chr1~chr12 172384434 91451571 52 -- 2.716306 51 30 21 51 464 TCGA-DX-A240-01A-32R-A27Q-07 PRMT8~Nchr12~58117429 intergenic "PRMT8," "-," chr12~chr12 3678357 58117429 11 ++ 2.019815 11 7 4 11 14 TCGA-DX-A240-01A-32R-A27Q-07 RAB5B~Nchr12~28753568 intergenic "RAB5B," "-," chr12~chr12 56367923 28753568 71 +- 2.932065 49 49 0 49 44 TCGA-DX-A240-01A-32R-A27Q-07 RAB5B~Nchr12~28753568 intergenic "RAB5B," "-," chr12~chr12 56368123 28753568 2 +- 0.693147 2 2 0 2 2 TCGA-DX-A240-01A-32R-A27Q-07 RAP1B~Nchr12~23088334 intergenic "RAP1B," "-," chr12~chr12 69004823 23088334 7 +- 1.549826 7 7 0 7 8 TCGA-DX-A240-01A-32R-A27Q-07 RAP1B~Nchr12~23088334 intergenic "RAP1B," "-," chr12~chr12 69004832 23088334 2 +- 0.693147 2 1 1 2 8 TCGA-DX-A240-01A-32R-A27Q-07 RBBP7~NDUFAF4 fusion "RBBP7," "NDUFAF4," chrX~chr6 16887199 97344723 19 -- 2.205155 19 16 3 19 54 TCGA-DX-A240-01A-32R-A27Q-07 RBBP7~NDUFAF4 fusion "RBBP7," "NDUFAF4," chrX~chr6 16888161 97344723 33 -- 2.834662 31 20 11 31 38 TCGA-DX-A240-01A-32R-A27Q-07 RBBP7~Nchr6~99452576 intergenic "RBBP7," "-," chrX~chr6 16887199 99452576 13 -+ 2.138397 10 5 5 10 18 TCGA-DX-A240-01A-32R-A27Q-07 RP1-34H18.1~NAV3 fusion "RP1-34H18.1," "NAV3," chr12~chr12 77966046 78334099 3 ++ 1.098612 2 2 0 2 2 TCGA-DX-A240-01A-32R-A27Q-07 RP11-174G6.1~Nchr1~168781278 intergenic "RP11-174G6.1," "-," chr12~chr1 14825248 168781278 3 ++ 1.098612 3 2 1 3 6 TCGA-DX-A240-01A-32R-A27Q-07 RP11-174G6.1~Nchr1~168838215 intergenic "RP11-174G6.1," "-," chr12~chr1 14825248 168838215 12 ++ 2.253858 12 6 6 12 20 TCGA-DX-A240-01A-32R-A27Q-07 RP11-96H19.1~IFNG fusion "RP11-96H19.1," "IFNG," chr12~chr12 46781755 68549267 3 +- 0.636514 3 3 0 3 4 TCGA-DX-A240-01A-32R-A27Q-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 4 ++ 1.039721 4 0 4 4 8 TCGA-DX-A240-01A-32R-A27Q-07 RP2~Nchr12~4363369 intergenic "RP2," "-," chrX~chr12 46737025 4363369 2 +- 0.693147 2 2 0 2 2 TCGA-DX-A240-01A-32R-A27Q-07 RP2~Nchr12~4372182 intergenic "RP2," "-," chrX~chr12 46737025 4372182 8 +- 1.906155 8 3 5 8 226 TCGA-DX-A240-01A-32R-A27Q-07 RP2~RP11-264F23.3 fusion "RP2," "RP11-264F23.3," chrX~chr12 46737025 4358296 6 +- 1.329661 5 1 4 5 308 TCGA-DX-A240-01A-32R-A27Q-07 RP2~RP11-264F23.3 fusion "RP2," "RP11-264F23.3," chrX~chr12 46737025 4358356 3 +- 1.098612 3 0 3 3 622 TCGA-DX-A240-01A-32R-A27Q-07 RP2~RP11-264F23.3 fusion "RP2," "RP11-264F23.3," chrX~chr12 46719537 4358359 55 +- 2.883988 51 30 21 51 278 TCGA-DX-A240-01A-32R-A27Q-07 RP2~RP11-264F23.3 fusion "RP2," "RP11-264F23.3," chrX~chr12 46737025 4358359 141 +- 3.260259 137 71 66 137 656 TCGA-DX-A240-01A-32R-A27Q-07 RP2~RP11-264F23.4 fusion "RP2," "RP11-264F23.4," chrX~chr12 46737025 4362351 10 +- 2.163956 10 9 1 10 22 TCGA-DX-A240-01A-32R-A27Q-07 RPAP3~Nchr12~68937143 intergenic "RPAP3," "-," chr12~chr12 48060763 68937143 4 -+ 1.039721 4 1 3 4 12 TCGA-DX-A240-01A-32R-A27Q-07 RPAP3~Nchr12~68937272 intergenic "RPAP3," "-," chr12~chr12 48060763 68937272 2 -+ 0.693147 2 2 0 2 6 TCGA-DX-A240-01A-32R-A27Q-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 7 +- 1.277034 7 0 7 7 4 TCGA-DX-A240-01A-32R-A27Q-07 RSBN1L~PHTF2 fusion "RSBN1L," "PHTF2," chr7~chr7 77326372 77538110 4 ++ 0.562335 3 3 0 3 8 TCGA-DX-A240-01A-32R-A27Q-07 SAMD5~SASH1 fusion "SAMD5," "SASH1," chr6~chr6 147830523 148711270 3 ++ 1.098612 1 1 0 1 2 TCGA-DX-A240-01A-32R-A27Q-07 SH3KBP1~Nchr7~93720182 intergenic "SH3KBP1," "-," chrX~chr7 19724999 93720182 5 -- 1.05492 4 2 2 4 26 TCGA-DX-A240-01A-32R-A27Q-07 SH3KBP1~Nchr7~93908702 intergenic "SH3KBP1," "-," chrX~chr7 19724999 93908702 106 -- 3.136193 95 50 45 95 292 TCGA-DX-A240-01A-32R-A27Q-07 SH3KBP1~Nchr7~93936961 intergenic "SH3KBP1," "-," chrX~chr7 19724999 93936961 4 -- 1.039721 4 1 3 4 316 TCGA-DX-A240-01A-32R-A27Q-07 SH3KBP1~Nchr7~93996591 intergenic "SH3KBP1," "-," chrX~chr7 19724999 93996591 28 -- 2.543148 18 5 13 18 26 TCGA-DX-A240-01A-32R-A27Q-07 SLC2A13~ARHGDIB fusion "SLC2A13," "ARHGDIB," chr12~chr12 40422103 15100883 79 -- 3.037179 75 39 35 75 122 TCGA-DX-A240-01A-32R-A27Q-07 SLC2A13~NchrX~23528359 intergenic "SLC2A13," "-," chr12~chrX 40345059 23528359 47 -+ 2.449579 35 21 14 35 102 TCGA-DX-A240-01A-32R-A27Q-07 SLC38A1~Nchr12~24524053 intergenic "SLC38A1," "-," chr12~chr12 46662648 24524053 17 -+ 2.231607 16 12 4 16 48 TCGA-DX-A240-01A-32R-A27Q-07 SLC38A1~Nchr12~24524053 intergenic "SLC38A1," "-," chr12~chr12 46662309 24524053 32 -+ 2.869851 30 14 16 30 46 TCGA-DX-A240-01A-32R-A27Q-07 SLC38A1~Nchr12~24848080 intergenic "SLC38A1," "-," chr12~chr12 46662648 24848080 2 -+ 0.693147 2 2 0 2 10 TCGA-DX-A240-01A-32R-A27Q-07 SLC38A1~Nchr12~24852192 intergenic "SLC38A1," "-," chr12~chr12 46662309 24852192 3 -+ 1.098612 3 2 1 3 22 TCGA-DX-A240-01A-32R-A27Q-07 ST3GAL4~Nchr11~126522676 intergenic "ST3GAL4," "-," chr11~chr11 126279306 126522676 3 ++ 0.636514 3 3 0 3 4 TCGA-DX-A240-01A-32R-A27Q-07 SYNPR~Nchr3~63027689 intergenic "SYNPR," "-," chr3~chr3 63291821 63027689 3 -- 1.098612 3 1 2 3 2 TCGA-DX-A240-01A-32R-A27Q-07 USP21~NchrX~34468804 intergenic "USP21," "-," chr1~chrX 161134176 34468804 51 +- 2.553902 50 11 39 50 100 TCGA-DX-A1KW-01A-22R-A24X-07 AC011497.1~Nchr19~43155239 intergenic "AC011497.1," "-," chr19~chr19 42929356 43155239 4 ++ 1.386294 4 3 1 4 10 TCGA-DX-A1KW-01A-22R-A24X-07 ACAD10~Nchr12~76126999 intergenic "ACAD10," "-," chr12~chr12 112174808 76126999 20 ++ 2.570281 23 14 6 23 44 TCGA-DX-A1KW-01A-22R-A24X-07 AMDHD1~Nchr12~77069936 intergenic "AMDHD1," "-," chr12~chr12 96360286 77069936 8 ++ 1.732868 8 2 6 8 70 TCGA-DX-A1KW-01A-22R-A24X-07 AMDHD1~Nchr12~77105696 intergenic "AMDHD1," "-," chr12~chr12 96360286 77105696 6 ++ 1.56071 5 2 3 5 6 TCGA-DX-A1KW-01A-22R-A24X-07 AMDHD1~Nchr12~77111687 intergenic "AMDHD1," "-," chr12~chr12 96360286 77111687 58 ++ 2.941264 44 36 8 44 72 TCGA-DX-A1KW-01A-22R-A24X-07 AMDHD1~Nchr12~77123743 intergenic "AMDHD1," "-," chr12~chr12 96360286 77123743 4 ++ 1.039721 3 1 2 3 14 TCGA-DX-A1KW-01A-22R-A24X-07 ARL15~Nchr5~42223706 intergenic "ARL15," "-," chr5~chr5 53450410 42223706 4 -- 1.039721 4 0 4 4 2 TCGA-DX-A1KW-01A-22R-A24X-07 ARL15~Nchr5~42230071 intergenic "ARL15," "-," chr5~chr5 53450410 42230071 5 -- 1.332179 5 4 1 5 6 TCGA-DX-A1KW-01A-22R-A24X-07 ATXN2~Nchr12~122445840 intergenic "ATXN2," "-," chr12~chr12 111947353 122445840 10 -- 1.609438 10 4 6 10 8 TCGA-DX-A1KW-01A-22R-A24X-07 C12orf51~AMDHD1 fusion "C12orf51," "AMDHD1," chr12~chr12 112819756 96360126 93 -+ 3.140028 78 62 16 78 164 TCGA-DX-A1KW-01A-22R-A24X-07 C12orf51~Nchr12~73853149 intergenic "C12orf51," "-," chr12~chr12 112819756 73853149 5 -+ 1.609438 5 3 2 5 8 TCGA-DX-A1KW-01A-22R-A24X-07 C12orf51~Nchr12~96545622 intergenic "C12orf51," "-," chr12~chr12 112641440 96545622 77 -+ 3.046744 77 30 47 77 178 TCGA-DX-A1KW-01A-22R-A24X-07 C12orf51~Nchr12~96547940 intergenic "C12orf51," "-," chr12~chr12 112641440 96547940 6 -+ 1.56071 6 3 3 6 8 TCGA-DX-A1KW-01A-22R-A24X-07 C12orf51~Nchr12~96567816 intergenic "C12orf51," "-," chr12~chr12 112641440 96567816 10 -+ 1.973001 10 8 2 10 22 TCGA-DX-A1KW-01A-22R-A24X-07 C12orf51~RP11-362K2.2 fusion "C12orf51," "RP11-362K2.2," chr12~chr12 112819756 59199723 31 -+ 2.433864 30 24 6 30 342 TCGA-DX-A1KW-01A-22R-A24X-07 C12orf51~RP11-362K2.2 fusion "C12orf51," "RP11-362K2.2," chr12~chr12 112819756 59206196 173 -+ 2.933548 168 122 46 168 336 TCGA-DX-A1KW-01A-22R-A24X-07 C12orf51~RP11-362K2.2 fusion "C12orf51," "RP11-362K2.2," chr12~chr12 112819639 59206196 3 -+ 1.098612 3 2 1 3 370 TCGA-DX-A1KW-01A-22R-A24X-07 CAMKK2~DIP2B fusion "CAMKK2," "DIP2B," chr12~chr12 121734441 51019759 47 -+ 2.876556 46 42 4 46 72 TCGA-DX-A1KW-01A-22R-A24X-07 CAMKK2~DIP2B fusion "CAMKK2," "DIP2B," chr12~chr12 121734441 51108178 16 -+ 2.096353 16 16 0 16 28 TCGA-DX-A1KW-01A-22R-A24X-07 CAMKK2~Nchr12~92910251 intergenic "CAMKK2," "-," chr12~chr12 121734441 92910251 2 -- 0.693147 2 2 0 2 46 TCGA-DX-A1KW-01A-22R-A24X-07 CAMKK2~Nchr12~92910255 intergenic "CAMKK2," "-," chr12~chr12 121734441 92910255 26 -- 2.7581 19 17 2 19 50 TCGA-DX-A1KW-01A-22R-A24X-07 CAMKK2~Nchr12~92991836 intergenic "CAMKK2," "-," chr12~chr12 121734441 92991836 11 -- 2.145842 11 11 0 11 28 TCGA-DX-A1KW-01A-22R-A24X-07 CCT2~Nchr12~48925896 intergenic "CCT2," "-," chr12~chr12 69980598 48925896 3 ++ 1.098612 3 1 2 3 6 TCGA-DX-A1KW-01A-22R-A24X-07 CCT2~Nchr12~48933409 intergenic "CCT2," "-," chr12~chr12 69980598 48933409 34 ++ 2.787044 30 13 17 30 122 TCGA-DX-A1KW-01A-22R-A24X-07 CCT2~Nchr12~48933414 intergenic "CCT2," "-," chr12~chr12 69980598 48933414 34 ++ 2.550362 24 11 13 24 102 TCGA-DX-A1KW-01A-22R-A24X-07 CCT2~Nchr12~48987502 intergenic "CCT2," "-," chr12~chr12 69980598 48987502 12 ++ 2.253858 12 6 6 12 72 TCGA-DX-A1KW-01A-22R-A24X-07 CCT2~OR8S1 fusion "CCT2," "OR8S1," chr12~chr12 69980598 48922111 4 ++ 1.386294 4 1 3 4 20 TCGA-DX-A1KW-01A-22R-A24X-07 CCT2~OR8S1 fusion "CCT2," "OR8S1," chr12~chr12 69980598 48922286 8 ++ 1.732868 7 2 5 7 16 TCGA-DX-A1KW-01A-22R-A24X-07 CCT2~OR8S1 fusion "CCT2," "OR8S1," chr12~chr12 69980598 48922328 4 ++ 1.386294 4 2 2 4 6 TCGA-DX-A1KW-01A-22R-A24X-07 CHPT1~ATXN2 fusion "CHPT1," "ATXN2," chr12~chr12 102091912 111947802 23 +- 2.547531 21 10 11 21 32 TCGA-DX-A1KW-01A-22R-A24X-07 CHPT1~ATXN2 fusion "CHPT1," "ATXN2," chr12~chr12 102091912 111948248 5 +- 1.609438 5 3 2 5 44 TCGA-DX-A1KW-01A-22R-A24X-07 CHPT1~ATXN2 fusion "CHPT1," "ATXN2," chr12~chr12 102091912 111948386 51 +- 2.496037 46 18 28 46 92 TCGA-DX-A1KW-01A-22R-A24X-07 CHPT1~Nchr12~90460773 intergenic "CHPT1," "-," chr12~chr12 102091912 90460773 18 ++ 2.139086 16 13 3 16 206 TCGA-DX-A1KW-01A-22R-A24X-07 CHPT1~Nchr12~90460773 intergenic "CHPT1," "-," chr12~chr12 102091522 90460773 2 ++ 0.693147 2 1 1 2 12 TCGA-DX-A1KW-01A-22R-A24X-07 CHPT1~Nchr12~90494480 intergenic "CHPT1," "-," chr12~chr12 102091912 90494480 241 ++ 3.185232 224 101 123 224 398 TCGA-DX-A1KW-01A-22R-A24X-07 CHPT1~Nchr12~98239086 intergenic "CHPT1," "-," chr12~chr12 102091912 98239086 82 +- 3.13055 48 13 35 48 108 TCGA-DX-A1KW-01A-22R-A24X-07 CLIP1~MORN3 fusion "CLIP1," "MORN3," chr12~chr12 122817534 122107418 2 -- 0.693147 2 0 2 2 4 TCGA-DX-A1KW-01A-22R-A24X-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264376 94038082 2 -+ 0.693147 1 1 0 1 6 TCGA-DX-A1KW-01A-22R-A24X-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272682 94043012 6 -+ 1.791759 6 5 1 6 4 TCGA-DX-A1KW-01A-22R-A24X-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273675 94047856 7 -+ 1.747868 4 3 1 4 4 TCGA-DX-A1KW-01A-22R-A24X-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48270158 189858960 320 -+ 0.796084 172 171 1 172 12 TCGA-DX-A1KW-01A-22R-A24X-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272795 189859032 21 -+ 0.191444 21 21 0 21 28 TCGA-DX-A1KW-01A-22R-A24X-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268836 189862999 8 -+ 1.494175 7 2 5 7 32 TCGA-DX-A1KW-01A-22R-A24X-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268845 189862999 8 -+ 1.073543 8 5 3 8 32 TCGA-DX-A1KW-01A-22R-A24X-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268178 189870076 10 -+ 0.325083 8 7 1 8 14 TCGA-DX-A1KW-01A-22R-A24X-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266738 189871071 3 -+ 0.636514 2 1 1 2 8 TCGA-DX-A1KW-01A-22R-A24X-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268178 189871071 5 -+ 1.609438 3 2 1 3 6 TCGA-DX-A1KW-01A-22R-A24X-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94050374 48271402 2 +- 0.693147 2 1 1 2 8 TCGA-DX-A1KW-01A-22R-A24X-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94039133 189859267 2 ++ 0.693147 2 0 2 2 2 TCGA-DX-A1KW-01A-22R-A24X-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94049717 189859456 6 ++ 1.329661 2 1 1 2 28 TCGA-DX-A1KW-01A-22R-A24X-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94050374 189860418 4 ++ 1.386294 3 0 3 3 18 TCGA-DX-A1KW-01A-22R-A24X-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94047050 189867030 4 ++ 1.039721 3 2 1 3 4 TCGA-DX-A1KW-01A-22R-A24X-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870985 48265998 5 +- 1.609438 5 1 4 5 24 TCGA-DX-A1KW-01A-22R-A24X-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189860433 48270402 4 +- 0.693147 3 2 1 3 4 TCGA-DX-A1KW-01A-22R-A24X-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189870183 94054922 11 ++ 1.033562 9 8 1 9 6 TCGA-DX-A1KW-01A-22R-A24X-07 COL3A1~COL6A2 fusion "COL3A1," "COL6A2," chr2~chr21 189868726 47542022 9 ++ 1.002718 7 6 1 7 2 TCGA-DX-A1KW-01A-22R-A24X-07 CPM~Nchr12~90460773 intergenic "CPM," "-," chr12~chr12 69290835 90460773 6 ++ 1.791759 4 0 4 4 4 TCGA-DX-A1KW-01A-22R-A24X-07 DIP2B~Nchr12~92910251 intergenic "DIP2B," "-," chr12~chr12 50899023 92910251 3 +- 1.098612 3 1 2 3 178 TCGA-DX-A1KW-01A-22R-A24X-07 DIP2B~Nchr12~92910255 intergenic "DIP2B," "-," chr12~chr12 50899023 92910255 56 +- 2.780372 49 23 26 49 182 TCGA-DX-A1KW-01A-22R-A24X-07 DIP2B~Nchr12~92991836 intergenic "DIP2B," "-," chr12~chr12 50899023 92991836 23 +- 2.751102 23 13 10 23 36 TCGA-DX-A1KW-01A-22R-A24X-07 ELK3~KRT78 fusion "RP11-394J1.2,ELK3," "KRT78," chr12~chr12 96617551 53241905 30 +- 2.557191 30 11 19 30 112 TCGA-DX-A1KW-01A-22R-A24X-07 ELK3~KRT78 fusion "RP11-394J1.2,ELK3," "KRT78," chr12~chr12 96617551 53242405 40 +- 2.780746 38 15 23 38 186 TCGA-DX-A1KW-01A-22R-A24X-07 FAM110B~Nchr8~77075249 intergenic "FAM110B," "-," chr8~chr8 58988182 77075249 16 +- 2.339372 12 7 5 12 16 TCGA-DX-A1KW-01A-22R-A24X-07 FMNL3~C12orf51 fusion "FMNL3," "C12orf51," chr12~chr12 50100838 112717190 3 -- 1.098612 3 3 0 3 6 TCGA-DX-A1KW-01A-22R-A24X-07 FMNL3~C12orf51 fusion "FMNL3," "C12orf51," chr12~chr12 50100838 112721106 12 -- 2.138333 12 9 3 12 36 TCGA-DX-A1KW-01A-22R-A24X-07 FMNL3~Nchr12~58886210 intergenic "FMNL3," "-," chr12~chr12 50059615 58886210 10 -+ 2.025326 10 7 3 10 8 TCGA-DX-A1KW-01A-22R-A24X-07 FMNL3~RP11-362K2.2 fusion "FMNL3," "RP11-362K2.2," chr12~chr12 50062254 58937907 26 -+ 2.588425 18 18 0 18 12 TCGA-DX-A1KW-01A-22R-A24X-07 FMNL3~RP11-362K2.2 fusion "FMNL3," "RP11-362K2.2," chr12~chr12 50059910 58937907 4 -+ 1.386294 3 3 0 3 12 TCGA-DX-A1KW-01A-22R-A24X-07 FMNL3~RP11-362K2.2 fusion "FMNL3," "RP11-362K2.2," chr12~chr12 50059615 58937907 137 -+ 2.891139 93 90 3 93 34 TCGA-DX-A1KW-01A-22R-A24X-07 FMNL3~RP11-362K2.2 fusion "FMNL3," "RP11-362K2.2," chr12~chr12 50100838 58937907 4 -+ 1.386294 2 2 0 2 2 TCGA-DX-A1KW-01A-22R-A24X-07 FRS2~GLIPR1L2 fusion "FRS2," "GLIPR1L2," chr12~chr12 69931763 75807378 4 ++ 0.562335 4 0 4 4 4 TCGA-DX-A1KW-01A-22R-A24X-07 GLIPR1~CDK17 fusion "GLIPR1,KRR1," "CDK17," chr12~chr12 75895503 96707232 2 -- 0.693147 2 0 2 2 2 TCGA-DX-A1KW-01A-22R-A24X-07 GLIPR1~CDK17 fusion "KRR1,GLIPR1,KRR1," "CDK17," chr12~chr12 75893593 96707232 14 -- 2.044931 14 7 7 14 36 TCGA-DX-A1KW-01A-22R-A24X-07 GLIPR1~CDK17 fusion "KRR1,GLIPR1,KRR1," "CDK17," chr12~chr12 75893593 96707234 4 -- 0.693147 4 1 3 4 36 TCGA-DX-A1KW-01A-22R-A24X-07 GNS~NUP107 fusion "GNS," "NUP107," chr12~chr12 65130784 69103018 228 -+ 3.157705 220 112 108 220 516 TCGA-DX-A1KW-01A-22R-A24X-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31236853 31322072 2 -- 0.693147 1 0 1 1 62 TCGA-DX-A1KW-01A-22R-A24X-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 137 -- 2.148342 137 137 0 137 112 TCGA-DX-A1KW-01A-22R-A24X-07 KDM2B~Nchr12~70829794 intergenic "KDM2B," "-," chr12~chr12 121932382 70829794 3 -- 1.098612 3 1 2 3 2 TCGA-DX-A1KW-01A-22R-A24X-07 KNTC1~BTBD11 fusion "KNTC1," "BTBD11," chr12~chr12 123065217 108053138 12 ++ 2.138333 12 7 5 12 24 TCGA-DX-A1KW-01A-22R-A24X-07 NUP107~CAPS2 fusion "NUP107," "CAPS2," chr12~chr12 69119576 75754799 2 +- 0.693147 2 1 1 2 14 TCGA-DX-A1KW-01A-22R-A24X-07 NUP107~Nchr12~75756698 intergenic "NUP107," "-," chr12~chr12 69119576 75756698 17 +- 2.557794 17 13 4 17 16 TCGA-DX-A1KW-01A-22R-A24X-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 79 -+ 2.102839 31 0 31 31 32 TCGA-DX-A1KW-01A-22R-A24X-07 Nchr12~52244094~MLXIP intergenic "-," "MLXIP," chr12~chr12 52244094 122611803 3 ++ 1.098612 3 1 2 3 24 TCGA-DX-A1KW-01A-22R-A24X-07 Nchr12~74263522~Nchr12~48729457 intergenic "-," "-," chr12~chr12 74263522 48729457 3 ++ 1.098612 3 3 0 3 6 TCGA-DX-A1KW-01A-22R-A24X-07 Nchr12~77473518~AVIL intergenic "-," "AVIL," chr12~chr12 77473518 58194995 8 +- 1.906155 7 5 2 7 8 TCGA-DX-A1KW-01A-22R-A24X-07 Nchr12~91900488~AMDHD1 intergenic "-," "AMDHD1," chr12~chr12 91900488 96361534 39 -+ 2.66357 25 16 9 25 48 TCGA-DX-A1KW-01A-22R-A24X-07 Nchr12~91900488~Nchr12~118984668 intergenic "-," "-," chr12~chr12 91900488 118984668 4 -- 1.386294 4 1 3 4 20 TCGA-DX-A1KW-01A-22R-A24X-07 Nchr12~98238993~AMDHD1 intergenic "-," "AMDHD1," chr12~chr12 98238993 96361534 18 -+ 2.245172 3 3 0 3 18 TCGA-DX-A1KW-01A-22R-A24X-07 Nchr12~98238993~Nchr12~91900658 intergenic "-," "-," chr12~chr12 98238993 91900658 48 -- 2.994239 24 20 4 24 32 TCGA-DX-A1KW-01A-22R-A24X-07 Nchr16~79619777~Nchr16~79246798 intergenic "-," "-," chr16~chr16 79619777 79246798 3 -- 1.098612 3 2 1 3 2 TCGA-DX-A1KW-01A-22R-A24X-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 7 ++ 1.94591 5 1 4 5 28 TCGA-DX-A1KW-01A-22R-A24X-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 5 ++ 1.332179 3 1 2 3 10 TCGA-DX-A1KW-01A-22R-A24X-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151282 4 -- 1.039721 1 1 0 1 16 TCGA-DX-A1KW-01A-22R-A24X-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 14 -- 2.441015 9 3 6 9 20 TCGA-DX-A1KW-01A-22R-A24X-07 Nchr6~29855732~HLA-C intergenic "-," "HLA-C," chr6~chr6 29855732 31239498 2 -- 0.693147 1 0 1 1 4 TCGA-DX-A1KW-01A-22R-A24X-07 Nchr6~8558876~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8558876 8784424 4 ++ 1.386294 3 1 2 3 4 TCGA-DX-A1KW-01A-22R-A24X-07 PLEKHG7~Nchr12~92910255 intergenic "PLEKHG7," "-," chr12~chr12 93122810 92910255 5 -- 1.332179 4 3 1 4 4 TCGA-DX-A1KW-01A-22R-A24X-07 PTPN11~C12orf28 fusion "PTPN11," "C12orf28," chr12~chr12 112856929 70290936 19 ++ 2.201512 19 14 5 19 48 TCGA-DX-A1KW-01A-22R-A24X-07 PTPN11~C12orf28 fusion "PTPN11," "C12orf28," chr12~chr12 112856929 70297424 24 ++ 2.672352 23 12 11 23 36 TCGA-DX-A1KW-01A-22R-A24X-07 PTPN11~EPYC fusion "PTPN11," "EPYC," chr12~chr12 112892484 91372039 4 +- 1.386294 3 3 0 3 392 TCGA-DX-A1KW-01A-22R-A24X-07 PWP1~CCDC63 fusion "PWP1," "CCDC63," chr12~chr12 108098524 111330880 467 ++ 3.167255 456 231 225 456 896 TCGA-DX-A1KW-01A-22R-A24X-07 PWP1~CCDC63 fusion "PWP1," "CCDC63," chr12~chr12 108091374 111330880 22 ++ 2.602381 20 5 15 20 52 TCGA-DX-A1KW-01A-22R-A24X-07 RP1-34H18.1~NAV3 fusion "RP1-34H18.1," "NAV3," chr12~chr12 77966046 78334099 2 ++ 0.693147 2 1 1 2 6 TCGA-DX-A1KW-01A-22R-A24X-07 RP1-34H18.1~RP11-781A6.1 fusion "RP1-34H18.1," "RP11-781A6.1," chr12~chr12 77966046 78177043 6 ++ 1.56071 6 2 4 6 12 TCGA-DX-A1KW-01A-22R-A24X-07 RP11-362K2.2~NAP1L1 fusion "RP11-362K2.2," "NAP1L1," chr12~chr12 58937962 76468019 4 +- 1.386294 1 0 1 1 6 TCGA-DX-A1KW-01A-22R-A24X-07 RP11-362K2.2~Nchr12~58702970 intergenic "RP11-362K2.2," "-," chr12~chr12 58937962 58702970 78 +- 3.171249 26 26 0 26 22 TCGA-DX-A1KW-01A-22R-A24X-07 RP11-366L20.2~Nchr12~92910255 intergenic "RP11-366L20.2," "-," chr12~chr12 66275498 92910255 4 -- 1.386294 4 2 2 4 2 TCGA-DX-A1KW-01A-22R-A24X-07 RP11-366L20.2~Nchr12~92991836 intergenic "RP11-366L20.2," "-," chr12~chr12 66275018 92991836 2 -- 0.693147 2 1 1 2 8 TCGA-DX-A1KW-01A-22R-A24X-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 4 ++ 1.039721 4 2 2 4 6 TCGA-DX-A1KW-01A-22R-A24X-07 SH2B3~Nchr12~90494480 intergenic "SH2B3," "-," chr12~chr12 111844081 90494480 2 ++ 0.693147 2 1 1 2 4 TCGA-DX-A1KW-01A-22R-A24X-07 TBC1D15~Nchr12~73832466 intergenic "TBC1D15," "-," chr12~chr12 72312231 73832466 10 -+ 1.886697 8 7 1 8 6 TCGA-DX-A1KW-01A-22R-A24X-07 TENC1~KCNH3 fusion "TENC1," "KCNH3," chr12~chr12 53452099 49942678 6 ++ 1.56071 5 4 1 5 18 TCGA-DX-A1KW-01A-22R-A24X-07 TMEM116~Nchr12~75030157 intergenic "TMEM116," "-," chr12~chr12 112429562 75030157 6 -+ 1.791759 5 3 2 5 66 TCGA-DX-A1KW-01A-22R-A24X-07 TMEM116~Nchr12~75039310 intergenic "TMEM116," "-," chr12~chr12 112429562 75039310 16 -+ 2.220025 15 5 10 15 60 TCGA-DX-A1KW-01A-22R-A24X-07 TMEM120B~GRIP1 fusion "TMEM120B," "GRIP1," chr12~chr12 122211419 66773216 19 +- 2.698011 19 12 7 19 28 TCGA-DX-A1KW-01A-22R-A24X-07 TMEM120B~Nchr12~77030429 intergenic "TMEM120B," "-," chr12~chr12 122150870 77030429 2 +- 0.693147 2 2 0 2 6 TCGA-DX-A1KW-01A-22R-A24X-07 TMEM120B~Nchr12~77058762 intergenic "TMEM120B," "-," chr12~chr12 122150870 77058762 4 +- 1.386294 4 4 0 4 48 TCGA-DX-A1KW-01A-22R-A24X-07 TMEM120B~Nchr12~77058767 intergenic "TMEM120B," "-," chr12~chr12 122150870 77058767 12 +- 1.979205 11 5 6 11 50 TCGA-DX-A1KW-01A-22R-A24X-07 TMEM120B~Nchr12~77060824 intergenic "TMEM120B," "-," chr12~chr12 122150870 77060824 22 +- 2.626165 21 12 9 21 88 TCGA-DX-A1KW-01A-22R-A24X-07 TSFM~Nchr12~77464014 intergenic "TSFM," "-," chr12~chr12 58186856 77464014 6 +- 1.242453 6 2 4 6 6 TCGA-DX-A1KW-01A-22R-A24X-07 TTBK2~Nchr15~22483295 intergenic "TTBK2," "-," chr15~chr15 43132558 22483295 3 -- 1.098612 3 2 1 3 2 TCGA-DX-A1KW-01A-22R-A24X-07 TTBK2~Nchr15~22490685 intergenic "TTBK2," "-," chr15~chr15 43132558 22490685 7 -- 1.94591 6 4 2 6 8 TCGA-DX-A1KW-01A-22R-A24X-07 ZDHHC17~CSRP2 fusion "ZDHHC17," "CSRP2," chr12~chr12 77158109 77260041 13 +- 2.138397 13 8 5 13 44 TCGA-DX-A1KW-01A-22R-A24X-07 ZDHHC17~Nchr12~77329945 intergenic "ZDHHC17," "-," chr12~chr12 77158109 77329945 3 +- 0.636514 3 0 3 3 6 TCGA-HB-A3YV-01A-11R-A24X-07 AC012158.1~RP11-81H14.2 fusion "AC012158.1," "RP11-81H14.2," chr12~chr12 64621765 68845332 8 +- 1.494175 8 6 2 8 22 TCGA-HB-A3YV-01A-11R-A24X-07 AIG1~Nchr6~152135331 intergenic "AIG1," "-," chr6~chr6 143382203 152135331 7 +- 1.94591 7 3 4 7 34 TCGA-HB-A3YV-01A-11R-A24X-07 AKAP12~ASCC3 fusion "AKAP12," "ASCC3," chr6~chr6 151561859 100988263 19 +- 2.232694 18 18 0 18 24 TCGA-HB-A3YV-01A-11R-A24X-07 AKAP12~ASCC3 fusion "AKAP12," "ASCC3," chr6~chr6 151561859 101037935 35 +- 2.188154 34 34 0 34 38 TCGA-HB-A3YV-01A-11R-A24X-07 AKAP12~Nchr6~140635967 intergenic "AKAP12," "-," chr6~chr6 151561859 140635967 17 ++ 0.876092 13 13 0 13 38 TCGA-HB-A3YV-01A-11R-A24X-07 ALG13~Nchr12~60700041 intergenic "ALG13," "-," chrX~chr12 110973808 60700041 3 ++ 1.098612 3 1 2 3 4 TCGA-HB-A3YV-01A-11R-A24X-07 ALX4~LMX1A fusion "ALX4," "LMX1A," chr11~chr1 44331147 165183050 4 -- 1.386294 4 1 3 4 6 TCGA-HB-A3YV-01A-11R-A24X-07 ASCC3~Nchr6~100067283 intergenic "ASCC3," "-," chr6~chr6 100988039 100067283 2 -- 0.693147 2 1 1 2 6 TCGA-HB-A3YV-01A-11R-A24X-07 ASCC3~Nchr6~135941362 intergenic "ASCC3," "-," chr6~chr6 101246589 135941362 12 -- 2.369382 12 5 7 12 20 TCGA-HB-A3YV-01A-11R-A24X-07 ASCC3~Nchr6~135942045 intergenic "ASCC3," "-," chr6~chr6 101246589 135942045 2 -- 0.693147 2 1 1 2 28 TCGA-HB-A3YV-01A-11R-A24X-07 ASCC3~RP11-240M16.1 fusion "ASCC3," "RP11-240M16.1," chr6~chr6 100988039 138272278 4 -+ 1.386294 4 4 0 4 6 TCGA-HB-A3YV-01A-11R-A24X-07 BPTF~FBRSL1 fusion "BPTF," "FBRSL1," chr17~chr12 65962772 133110114 11 ++ 1.84622 10 6 4 10 24 TCGA-HB-A3YV-01A-11R-A24X-07 BZW2~Nchr5~164748552 intergenic "BZW2," "-," chr7~chr5 16722470 164748552 2 +- 0.693147 2 2 0 2 10 TCGA-HB-A3YV-01A-11R-A24X-07 C12orf28~Nchr6~154242358 intergenic "C12orf28," "-," chr12~chr6 70249150 154242358 18 ++ 2.428274 16 5 11 16 48 TCGA-HB-A3YV-01A-11R-A24X-07 C12orf28~Nchr6~154242432 intergenic "C12orf28," "-," chr12~chr6 70249150 154242432 3 ++ 1.098612 2 0 2 2 16 TCGA-HB-A3YV-01A-11R-A24X-07 C12orf66~NXF3 fusion "C12orf66," "NXF3," chr12~chrX 64609458 102339811 8 -- 1.906155 7 2 5 7 10 TCGA-HB-A3YV-01A-11R-A24X-07 C12orf66~Nchr12~65297690 intergenic "C12orf66," "-," chr12~chr12 64609458 65297690 15 -- 2.211069 14 10 4 14 208 TCGA-HB-A3YV-01A-11R-A24X-07 C1orf196~KAZN fusion "C1orf196," "KAZN," chr1~chr1 14507087 14925479 5 ++ 1.332179 4 4 0 4 6 TCGA-HB-A3YV-01A-11R-A24X-07 C20orf94~Nchr20~12135155 intergenic "C20orf94," "-," chr20~chr20 10541468 12135155 2 +- 0.693147 2 0 2 2 10 TCGA-HB-A3YV-01A-11R-A24X-07 C6orf168~Nchr9~84981981 intergenic "C6orf168," "-," chr6~chr9 99781227 84981981 2 -- 0.693147 1 1 0 1 6 TCGA-HB-A3YV-01A-11R-A24X-07 C6orf170~NchrX~102611019 intergenic "C6orf170," "-," chr6~chrX 121624763 102611019 13 -+ 2.204785 11 5 6 11 48 TCGA-HB-A3YV-01A-11R-A24X-07 C6orf186~REPS1 fusion "C6orf186," "REPS1," chr6~chr6 110653643 139251235 46 -- 2.89381 31 6 25 31 94 TCGA-HB-A3YV-01A-11R-A24X-07 C6orf186~REPS1 fusion "C6orf186," "REPS1," chr6~chr6 110669280 139251235 3 -- 1.098612 1 0 1 1 6 TCGA-HB-A3YV-01A-11R-A24X-07 C6orf186~REPS1 fusion "C6orf186," "REPS1," chr6~chr6 110679158 139251235 8 -- 2.079442 8 0 8 8 12 TCGA-HB-A3YV-01A-11R-A24X-07 CALD1~Nchr6~124213192 intergenic "CALD1," "-," chr7~chr6 134650137 124213192 5 +- 1.05492 5 1 4 5 12 TCGA-HB-A3YV-01A-11R-A24X-07 CAND1~Nchr6~141460372 intergenic "CAND1," "-," chr12~chr6 67663565 141460372 3 ++ 1.098612 2 0 2 2 20 TCGA-HB-A3YV-01A-11R-A24X-07 CCNC~Nchr6~143401516 intergenic "CCNC," "-," chr6~chr6 100016372 143401516 494 -- 2.696956 474 293 181 474 1812 TCGA-HB-A3YV-01A-11R-A24X-07 CCT2~UTRN fusion "CCT2," "UTRN," chr12~chr6 69991055 144724259 4 ++ 1.386294 4 2 2 4 4 TCGA-HB-A3YV-01A-11R-A24X-07 CNKSR3~PLP1 fusion "CNKSR3," "PLP1," chr6~chrX 154831197 103031781 5 -+ 1.609438 3 2 1 3 4 TCGA-HB-A3YV-01A-11R-A24X-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271772 94034161 2 -+ 0.693147 1 0 1 1 6 TCGA-HB-A3YV-01A-11R-A24X-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266755 94052369 10 -+ 1.359237 4 3 1 4 32 TCGA-HB-A3YV-01A-11R-A24X-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48275533 94055106 4 -+ 0.562335 2 1 1 2 2 TCGA-HB-A3YV-01A-11R-A24X-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271304 94055762 4 -+ 1.039721 4 3 1 4 4 TCGA-HB-A3YV-01A-11R-A24X-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48273978 189859267 2 -+ 0.693147 2 1 1 2 12 TCGA-HB-A3YV-01A-11R-A24X-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48271312 189860464 3 -+ 1.098612 2 1 1 2 22 TCGA-HB-A3YV-01A-11R-A24X-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268840 189862445 5 -+ 1.05492 5 3 2 5 10 TCGA-HB-A3YV-01A-11R-A24X-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268836 189862999 7 -+ 1.549826 7 2 5 7 4 TCGA-HB-A3YV-01A-11R-A24X-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268276 189863008 3 -+ 1.098612 3 1 2 3 16 TCGA-HB-A3YV-01A-11R-A24X-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48267688 189864196 2 -+ 0.693147 1 0 1 1 28 TCGA-HB-A3YV-01A-11R-A24X-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268178 189864568 7 -+ 1.153742 3 1 2 3 42 TCGA-HB-A3YV-01A-11R-A24X-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48271491 189868137 5 -+ 0.950271 4 3 1 4 14 TCGA-HB-A3YV-01A-11R-A24X-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266738 189868137 11 -+ 1.420572 2 1 1 2 20 TCGA-HB-A3YV-01A-11R-A24X-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94056607 48265254 8 +- 1.213008 2 0 2 2 6 TCGA-HB-A3YV-01A-11R-A24X-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049598 48265998 2 +- 0.693147 1 1 0 1 10 TCGA-HB-A3YV-01A-11R-A24X-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94047143 189856213 3 ++ 1.098612 2 2 0 2 4 TCGA-HB-A3YV-01A-11R-A24X-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94034169 189856213 4 ++ 1.039721 4 1 3 4 18 TCGA-HB-A3YV-01A-11R-A24X-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94047050 189867030 6 ++ 1.242453 1 0 1 1 6 TCGA-HB-A3YV-01A-11R-A24X-07 COL28A1~DGKB fusion "COL28A1," "DGKB," chr7~chr7 7559693 14935314 17 -- 2.507026 16 4 12 16 36 TCGA-HB-A3YV-01A-11R-A24X-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189871178 48268752 4 +- 1.386294 1 0 1 1 54 TCGA-HB-A3YV-01A-11R-A24X-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189856448 48274424 9 +- 1.002718 8 1 7 8 4 TCGA-HB-A3YV-01A-11R-A24X-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189855066 94034039 5 ++ 1.332179 5 2 3 5 8 TCGA-HB-A3YV-01A-11R-A24X-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189859058 94039554 13 ++ 0.271189 13 12 1 13 4 TCGA-HB-A3YV-01A-11R-A24X-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189861178 94039823 2 ++ 0.693147 1 0 1 1 8 TCGA-HB-A3YV-01A-11R-A24X-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189859058 94042395 3 ++ 1.098612 2 2 0 2 8 TCGA-HB-A3YV-01A-11R-A24X-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189858099 94042407 3 ++ 1.098612 3 2 1 3 8 TCGA-HB-A3YV-01A-11R-A24X-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189861142 94052369 13 ++ 0.271189 11 11 0 11 8 TCGA-HB-A3YV-01A-11R-A24X-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189870183 94054922 9 ++ 0.683739 9 8 1 9 4 TCGA-HB-A3YV-01A-11R-A24X-07 COL3A1~Nchr7~94015785 intergenic "COL3A1," "-," chr2~chr7 189870945 94015785 3 -+ 0.636514 1 0 1 1 14 TCGA-HB-A3YV-01A-11R-A24X-07 CPM~Nchr12~68761711 intergenic "CPM," "-," chr12~chr12 69260676 68761711 64 -+ 2.861078 62 23 39 62 76 TCGA-HB-A3YV-01A-11R-A24X-07 CPM~Nchr4~149787909 intergenic "CPM," "-," chr12~chr4 69279572 149787909 7 -+ 1.747868 1 1 0 1 10 TCGA-HB-A3YV-01A-11R-A24X-07 CPSF6~LAMA2 fusion "CPSF6," "LAMA2," chr12~chr6 69633486 129498851 27 ++ 2.445591 22 6 16 22 68 TCGA-HB-A3YV-01A-11R-A24X-07 CTD-2187J20.1~RP11-434D9.1 fusion "CTD-2187J20.1," "RP11-434D9.1," chr5~chr5 66565983 66915619 3 ++ 1.098612 3 2 1 3 28 TCGA-HB-A3YV-01A-11R-A24X-07 CTD-2187J20.1~RP11-434D9.1 fusion "CTD-2187J20.1," "RP11-434D9.1," chr5~chr5 66565987 66915619 4 ++ 1.386294 3 1 2 3 32 TCGA-HB-A3YV-01A-11R-A24X-07 CYP27B1~ZBTB2 fusion "CYP27B1," "ZBTB2," chr12~chr6 58156733 151688027 5 -- 1.609438 5 3 2 5 2 TCGA-HB-A3YV-01A-11R-A24X-07 DAB2IP~Nchr9~118016672 intergenic "DAB2IP," "-," chr9~chr9 124461737 118016672 35 +- 3.035197 34 19 15 34 98 TCGA-HB-A3YV-01A-11R-A24X-07 DAB2IP~RP11-523L1.2 fusion "DAB2IP," "RP11-523L1.2," chr9~chr9 124461737 117888702 2 +- 0.693147 2 1 1 2 6 TCGA-HB-A3YV-01A-11R-A24X-07 DDO~Nchr6~154111475 intergenic "DDO," "-," chr6~chr6 110734494 154111475 10 -- 2.025326 10 1 9 10 44 TCGA-HB-A3YV-01A-11R-A24X-07 DDX60L~Nchr4~141702648 intergenic "DDX60L," "-," chr4~chr4 169298879 141702648 2 -+ 0.693147 2 0 2 2 10 TCGA-HB-A3YV-01A-11R-A24X-07 DOCK11~Nchr6~140213444 intergenic "DOCK11," "-," chrX~chr6 117758618 140213444 45 +- 2.722572 45 38 7 45 92 TCGA-HB-A3YV-01A-11R-A24X-07 DOCK11~Nchr6~140213444 intergenic "DOCK11," "-," chrX~chr6 117752691 140213444 3 +- 0.636514 3 2 1 3 14 TCGA-HB-A3YV-01A-11R-A24X-07 DPM1~Nchr4~64472676 intergenic "DPM1," "-," chr20~chr4 49557402 64472676 9 -+ 2.043192 8 4 4 8 34 TCGA-HB-A3YV-01A-11R-A24X-07 DYRK1B~Nchr4~26502142 intergenic "DYRK1B," "-," chr19~chr4 40324663 26502142 3 -+ 1.098612 3 2 1 3 20 TCGA-HB-A3YV-01A-11R-A24X-07 EEF1DP3~BLVRB fusion "EEF1DP3," "BLVRB," chr13~chr19 32421076 40964452 7 +- 1.475076 7 0 7 7 12 TCGA-HB-A3YV-01A-11R-A24X-07 EEF1D~Nchr8~129985273 intergenic "EEF1D," "-," chr8~chr8 144668899 129985273 5 -+ 1.332179 4 3 1 4 4 TCGA-HB-A3YV-01A-11R-A24X-07 EP300~Nchr7~1113194 intergenic "EP300," "-," chr22~chr7 41560134 1113194 4 ++ 1.039721 4 1 3 4 8 TCGA-HB-A3YV-01A-11R-A24X-07 EVC2~CPM fusion "EVC2," "MDM2,CPM," chr4~chr12 5710013 69236109 2 -- 0.693147 2 0 2 2 6 TCGA-HB-A3YV-01A-11R-A24X-07 FRS2~Nchr6~100067283 intergenic "FRS2," "-," chr12~chr6 69864310 100067283 4 +- 1.386294 4 2 2 4 12 TCGA-HB-A3YV-01A-11R-A24X-07 FRS2~Nchr6~100089427 intergenic "FRS2," "-," chr12~chr6 69864310 100089427 7 +- 1.747868 7 4 3 7 40 TCGA-HB-A3YV-01A-11R-A24X-07 FRS2~Nchr6~100117273 intergenic "FRS2," "-," chr12~chr6 69864310 100117273 2 +- 0.693147 2 1 1 2 8 TCGA-HB-A3YV-01A-11R-A24X-07 FRS2~TBC1D30 fusion "FRS2," "TBC1D30," chr12~chr12 69880077 65225899 10 ++ 1.973001 9 2 7 9 144 TCGA-HB-A3YV-01A-11R-A24X-07 FRS2~TBC1D30 fusion "FRS2," "TBC1D30," chr12~chr12 69867988 65225899 4 ++ 1.386294 4 0 4 4 86 TCGA-HB-A3YV-01A-11R-A24X-07 FRS2~TBC1D30 fusion "FRS2," "TBC1D30," chr12~chr12 69864310 65225899 15 ++ 2.430791 15 6 9 15 194 TCGA-HB-A3YV-01A-11R-A24X-07 FRS2~TBC1D30 fusion "FRS2," "TBC1D30," chr12~chr12 69880077 65230270 2 ++ 0.693147 1 1 0 1 8 TCGA-HB-A3YV-01A-11R-A24X-07 FRS2~TBC1D30 fusion "FRS2," "TBC1D30," chr12~chr12 69867988 65230270 3 ++ 0.636514 2 0 2 2 116 TCGA-HB-A3YV-01A-11R-A24X-07 FRS2~TBC1D30 fusion "FRS2," "TBC1D30," chr12~chr12 69864310 65230270 18 ++ 2.659323 17 8 9 17 120 TCGA-HB-A3YV-01A-11R-A24X-07 GNA11~TMCO3 fusion "GNA11," "TMCO3," chr19~chr13 3094785 114174931 25 ++ 2.809783 23 11 12 23 74 TCGA-HB-A3YV-01A-11R-A24X-07 GNA11~TMCO3 fusion "GNA11," "TMCO3," chr19~chr13 3094785 114193672 4 ++ 1.039721 4 3 1 4 12 TCGA-HB-A3YV-01A-11R-A24X-07 GNA11~TMCO3 fusion "GNA11," "TMCO3," chr19~chr13 3094785 114201615 3 ++ 1.098612 3 2 1 3 8 TCGA-HB-A3YV-01A-11R-A24X-07 GRIK2~Nchr4~142347716 intergenic "GRIK2," "-," chr6~chr4 101847268 142347716 3 ++ 1.098612 3 2 1 3 4 TCGA-HB-A3YV-01A-11R-A24X-07 GRIK2~Nchr4~142501524 intergenic "GRIK2," "-," chr6~chr4 101847268 142501524 9 ++ 1.83102 9 4 5 9 14 TCGA-HB-A3YV-01A-11R-A24X-07 GRIK2~Nchr6~138105993 intergenic "GRIK2," "-," chr6~chr6 102130481 138105993 53 +- 3.065784 41 24 17 41 40 TCGA-HB-A3YV-01A-11R-A24X-07 GRIK2~RNF217 fusion "GRIK2," "RNF217," chr6~chr6 102376507 125366357 47 ++ 2.688449 47 30 17 47 66 TCGA-HB-A3YV-01A-11R-A24X-07 GRIK2~RP11-356I2.1 fusion "GRIK2," "RP11-356I2.1," chr6~chr6 102130481 138051734 14 +- 2.242973 14 9 5 14 80 TCGA-HB-A3YV-01A-11R-A24X-07 GRIK2~RP11-356I2.1 fusion "GRIK2," "RP11-356I2.1," chr6~chr6 102124679 138051734 4 +- 1.386294 4 1 3 4 48 TCGA-HB-A3YV-01A-11R-A24X-07 GRIK2~RP11-356I2.1 fusion "GRIK2," "RP11-356I2.1," chr6~chr6 102124617 138051734 2 +- 0.693147 1 0 1 1 8 TCGA-HB-A3YV-01A-11R-A24X-07 GRIK2~WASF1 fusion "GRIK2," "WASF1," chr6~chr6 102134228 110448832 9 +- 1.676988 9 7 2 9 16 TCGA-HB-A3YV-01A-11R-A24X-07 GRIP1~TMEM5 fusion "GRIP1," "TMEM5," chr12~chr12 66990627 64199014 20 -+ 2.319575 13 12 1 13 68 TCGA-HB-A3YV-01A-11R-A24X-07 GRIP1~TMEM5 fusion "GRIP1," "TMEM5," chr12~chr12 66988891 64199014 2 -+ 0.693147 2 1 1 2 82 TCGA-HB-A3YV-01A-11R-A24X-07 GS1-410F4.4~Nchr6~140705515 intergenic "GS1-410F4.4," "-," chr12~chr6 68350493 140705515 7 -- 1.549826 2 0 2 2 4 TCGA-HB-A3YV-01A-11R-A24X-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 34 -- 1.655584 34 2 32 34 18 TCGA-HB-A3YV-01A-11R-A24X-07 IFNGR1~NHSL1 fusion "IFNGR1," "NHSL1," chr6~chr6 137540380 138768330 2 -- 0.693147 2 0 2 2 6 TCGA-HB-A3YV-01A-11R-A24X-07 IFNGR1~Nchr6~121360943 intergenic "IFNGR1," "-," chr6~chr6 137540380 121360943 2 -+ 0.693147 2 2 0 2 8 TCGA-HB-A3YV-01A-11R-A24X-07 IFNGR1~Nchr6~121367392 intergenic "IFNGR1," "-," chr6~chr6 137540380 121367392 56 -+ 2.539872 55 45 10 55 570 TCGA-HB-A3YV-01A-11R-A24X-07 IFNGR1~Nchr6~121367426 intergenic "IFNGR1," "-," chr6~chr6 137540380 121367426 214 -+ 3.040507 210 111 98 210 480 TCGA-HB-A3YV-01A-11R-A24X-07 IGF2~NchrX~107964283 intergenic "IGF2,IGF2," "-," chr11~chrX 2153053 107964283 2 +- 0.693147 1 0 1 1 6 TCGA-HB-A3YV-01A-11R-A24X-07 ISOC1~Nchr5~128679362 intergenic "ISOC1," "-," chr5~chr5 128442755 128679362 3 ++ 1.098612 3 3 0 3 12 TCGA-HB-A3YV-01A-11R-A24X-07 KCNE4~Nchr2~224271904 intergenic "KCNE4," "-," chr2~chr2 223925421 224271904 4 ++ 1.039721 4 1 3 4 2 TCGA-HB-A3YV-01A-11R-A24X-07 KIAA1244~GRIK2 fusion "KIAA1244," "GRIK2," chr6~chr6 138601301 102483216 4 ++ 1.386294 4 1 3 4 22 TCGA-HB-A3YV-01A-11R-A24X-07 LAMA2~GRIK2 fusion "LAMA2," "GRIK2," chr6~chr6 129513998 102124498 20 ++ 2.510529 19 14 5 19 58 TCGA-HB-A3YV-01A-11R-A24X-07 LAMA2~SLC11A2 fusion "LAMA2," "SLC11A2," chr6~chr12 129513998 51404549 5 +- 1.609438 5 2 3 5 4 TCGA-HB-A3YV-01A-11R-A24X-07 LDB2~Nchr13~77303645 intergenic "LDB2," "-," chr4~chr13 16760781 77303645 10 -- 1.834372 8 2 6 8 12 TCGA-HB-A3YV-01A-11R-A24X-07 LDLRAD3~PRR5L fusion "LDLRAD3," "PRR5L," chr11~chr11 36120011 36422547 3 ++ 1.098612 3 1 2 3 4 TCGA-HB-A3YV-01A-11R-A24X-07 LRBA~Nchr6~103440308 intergenic "LRBA," "-," chr4~chr6 151935579 103440308 10 -+ 1.834372 10 7 3 10 32 TCGA-HB-A3YV-01A-11R-A24X-07 MAML3~C6orf97 fusion "MAML3," "C6orf97," chr4~chr6 140810511 151869439 9 -+ 1.676988 9 6 3 9 16 TCGA-HB-A3YV-01A-11R-A24X-07 MCART6~Nchr6~153221986 intergenic "MCART6," "-," chrX~chr6 103373889 153221986 11 -+ 1.972247 11 5 6 11 58 TCGA-HB-A3YV-01A-11R-A24X-07 MCART6~Nchr6~153223963 intergenic "MCART6," "-," chrX~chr6 103375675 153223963 3 -+ 1.098612 3 2 1 3 8 TCGA-HB-A3YV-01A-11R-A24X-07 METTL7A~GRIK2 fusion "METTL7A," "GRIK2," chr12~chr6 51319319 102124498 3 ++ 1.098612 3 0 3 3 12 TCGA-HB-A3YV-01A-11R-A24X-07 MEX3D~DOCK11 fusion "MEX3D," "DOCK11," chr19~chrX 1567463 117676688 5 -+ 1.332179 5 1 4 5 18 TCGA-HB-A3YV-01A-11R-A24X-07 MSRB3~Nchr6~144534368 intergenic "MSRB3," "-," chr12~chr6 65672645 144534368 24 +- 2.232056 24 10 14 24 66 TCGA-HB-A3YV-01A-11R-A24X-07 MTHFD1L~C6orf211 fusion "MTHFD1L," "C6orf211," chr6~chr6 151187185 151775683 4 ++ 1.386294 4 0 4 4 6 TCGA-HB-A3YV-01A-11R-A24X-07 MTHFD1L~Nchr6~100939479 intergenic "MTHFD1L," "-," chr6~chr6 151209117 100939479 2 ++ 0.693147 2 0 2 2 2 TCGA-HB-A3YV-01A-11R-A24X-07 MTHFD1L~Nchr6~100940007 intergenic "MTHFD1L," "-," chr6~chr6 151209117 100940007 5 ++ 1.332179 5 3 2 5 6 TCGA-HB-A3YV-01A-11R-A24X-07 MTHFD1L~Nchr6~151540687 intergenic "MTHFD1L," "-," chr6~chr6 151270269 151540687 3 ++ 1.098612 3 1 2 3 4 TCGA-HB-A3YV-01A-11R-A24X-07 NAV2~Nchr8~2517260 intergenic "NAV2," "-," chr11~chr8 20104725 2517260 3 ++ 0.636514 2 1 1 2 12 TCGA-HB-A3YV-01A-11R-A24X-07 NAV2~Nchr8~2517265 intergenic "NAV2," "-," chr11~chr8 20104725 2517265 2 ++ 0.693147 2 2 0 2 8 TCGA-HB-A3YV-01A-11R-A24X-07 NRD1~Nchr1~41863302 intergenic "NRD1," "-," chr1~chr1 52274987 41863302 7 -- 1.94591 7 6 1 7 10 TCGA-HB-A3YV-01A-11R-A24X-07 NUP160~Nchr6~140348079 intergenic "NUP160," "-," chr11~chr6 47809734 140348079 8 -- 1.732868 8 5 3 8 10 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr10~47655224~ZNF488 intergenic "-," "ZNF488," chr10~chr10 47655224 48359418 6 -- 1.791759 5 1 4 5 4 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 42 -+ 2.454119 22 0 22 22 16 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr12~43086315~Nchr12~43446586 intergenic "-," "-," chr12~chr12 43086315 43446586 3 ++ 1.098612 3 0 3 3 2 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr12~58677409~CPM intergenic "-," "CPM," chr12~chr12 58677409 69279669 21 -- 2.689536 14 1 13 14 34 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr12~58752705~Nchr12~61424378 intergenic "-," "-," chr12~chr12 58752705 61424378 17 -- 2.476247 17 9 8 17 20 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr12~58752705~Nchr12~61430924 intergenic "-," "-," chr12~chr12 58752705 61430924 60 -- 2.979492 56 18 38 56 114 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr12~58752705~Nchr12~61431677 intergenic "-," "-," chr12~chr12 58752705 61431677 4 -- 1.386294 4 2 2 4 6 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr12~62849297~RP11-328M4.2 intergenic "-," "RP11-328M4.2," chr12~chr6 62849297 41516150 3 -- 1.098612 3 0 3 3 8 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr12~62849479~CPM intergenic "-," "MDM2,CPM," chr12~chr12 62849479 69236109 3 +- 1.098612 2 2 0 2 12 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr12~63867738~RP11-81H14.2 intergenic "-," "RP11-81H14.2," chr12~chr12 63867738 68845332 5 -- 1.609438 3 1 2 3 2 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr12~65402500~TNFAIP3 intergenic "-," "TNFAIP3," chr12~chr6 65402500 138198287 8 -- 1.667462 6 3 3 6 52 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr12~66392926~Nchr6~140636067 intergenic "-," "-," chr12~chr6 66392926 140636067 2 -- 0.693147 1 0 1 1 14 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr12~66470051~Nchr6~138296416 intergenic "-," "-," chr12~chr6 66470051 138296416 8 +- 1.906155 3 0 3 3 6 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr12~68152553~Nchr6~145311987 intergenic "-," "-," chr12~chr6 68152553 145311987 2 -+ 0.693147 2 2 0 2 2 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr12~68489656~Nchr6~140636714 intergenic "-," "-," chr12~chr6 68489656 140636714 10 -- 2.302585 5 0 5 5 24 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr12~68489656~Nchr6~140651236 intergenic "-," "-," chr12~chr6 68489656 140651236 4 -- 1.386294 3 0 3 3 4 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr12~68489656~Nchr6~140689374 intergenic "-," "-," chr12~chr6 68489656 140689374 16 -- 1.927392 7 6 1 7 4 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr12~68489656~Nchr6~140705515 intergenic "-," "-," chr12~chr6 68489656 140705515 99 -- 2.93693 56 19 35 56 186 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr13~77242158~MTHFD1L intergenic "-," "MTHFD1L," chr13~chr6 77242158 151331115 7 -- 1.549826 6 2 4 6 6 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr13~77303480~MTHFD1L intergenic "-," "MTHFD1L," chr13~chr6 77303480 151331115 15 -- 2.70805 13 7 6 13 24 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr13~77303480~MTHFD1L intergenic "-," "MTHFD1L," chr13~chr6 77303480 151339398 5 -- 1.05492 5 4 1 5 10 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr13~77303480~MTHFD1L intergenic "-," "MTHFD1L," chr13~chr6 77303480 151349330 3 -- 1.098612 3 2 1 3 6 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr13~77303480~MTHFD1L intergenic "-," "MTHFD1L," chr13~chr6 77303480 151350187 5 -- 1.609438 5 2 3 5 10 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr13~77351213~MTHFD1L intergenic "-," "MTHFD1L," chr13~chr6 77351213 151331115 2 -- 0.693147 2 0 2 2 16 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr13~77379239~REPS1 intergenic "-," "REPS1," chr13~chr6 77379239 139251235 5 -- 1.609438 5 3 2 5 1128 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr13~77380126~C6orf186 intergenic "-," "C6orf186," chr13~chr6 77380126 110653768 7 -- 1.94591 4 2 2 4 50 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr13~77380126~MTHFD1L intergenic "-," "MTHFD1L," chr13~chr6 77380126 151331115 4 -- 1.386294 3 2 1 3 4 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr13~77380126~REPS1 intergenic "-," "REPS1," chr13~chr6 77380126 139251235 64 -- 3.041254 54 23 31 54 1680 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr13~77386380~REPS1 intergenic "-," "REPS1," chr13~chr6 77386380 139251235 3 -- 1.098612 3 0 3 3 12 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr13~77390882~REPS1 intergenic "-," "REPS1," chr13~chr6 77390882 139251235 19 -- 2.625048 19 9 10 19 466 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr13~77391504~C6orf186 intergenic "-," "C6orf186," chr13~chr6 77391504 110653768 6 -- 1.56071 4 1 3 4 56 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr13~77391504~REPS1 intergenic "-," "REPS1," chr13~chr6 77391504 139251235 83 -- 3.020043 64 26 38 64 1362 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr13~77395439~Nchr6~138127816 intergenic "-," "-," chr13~chr6 77395439 138127816 6 -- 1.56071 3 0 3 3 2 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr13~77395439~REPS1 intergenic "-," "REPS1," chr13~chr6 77395439 139251235 81 -- 1.426205 77 0 77 77 22 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr13~77395743~REPS1 intergenic "-," "REPS1," chr13~chr6 77395743 139251235 9 -- 2.197225 9 0 9 9 78 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr13~77420536~C6orf186 intergenic "-," "C6orf186," chr13~chr6 77420536 110653768 18 -- 2.399204 8 1 7 8 40 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr13~77420536~Nchr6~138127816 intergenic "-," "-," chr13~chr6 77420536 138127816 5 -- 0.950271 1 1 0 1 28 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr13~77420536~REPS1 intergenic "-," "REPS1," chr13~chr6 77420536 139242261 6 -- 1.242453 1 0 1 1 100 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr13~77420536~REPS1 intergenic "-," "REPS1," chr13~chr6 77420536 139251235 279 -- 2.890199 255 33 222 255 1128 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr13~77420536~REPS1 intergenic "-," "REPS1," chr13~chr6 77420536 139255463 12 -- 1.820076 12 1 11 12 1142 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr13~77421232~REPS1 intergenic "-," "REPS1," chr13~chr6 77421232 139251235 10 -- 2.163956 8 1 7 8 10 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr13~77421826~REPS1 intergenic "-," "REPS1," chr13~chr6 77421826 139251235 4 -- 1.386294 4 1 3 4 6 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr14~45332151~Nchr6~140213444 intergenic "-," "-," chr14~chr6 45332151 140213444 14 -- 1.908535 14 14 0 14 14 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr15~94135962~Nchr15~94346208 intergenic "-," "-," chr15~chr15 94135962 94346208 10 ++ 2.163956 10 2 8 10 16 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr16~79619777~Nchr16~79246798 intergenic "-," "-," chr16~chr16 79619777 79246798 3 -- 1.098612 3 0 3 3 26 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 6 ++ 1.56071 5 1 4 5 2 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 6 ++ 1.56071 6 3 3 6 6 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr18~37115422~Nchr18~36788003 intergenic "-," "-," chr18~chr18 37115422 36788003 3 -- 1.098612 2 1 1 2 2 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr18~37115422~Nchr18~36788753 intergenic "-," "-," chr18~chr18 37115422 36788753 3 -- 1.098612 3 3 0 3 8 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 7 -- 1.94591 5 2 3 5 14 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr18~51269755~DCC intergenic "-," "DCC," chr18~chr18 51269755 51031690 12 -- 1.979205 11 7 4 11 16 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr19~28296278~SLC25A1 intergenic "-," "SLC25A1," chr19~chr22 28296278 19163589 25 ++ 1.331911 12 0 12 12 2 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 5 ++ 1.332179 3 3 0 3 10 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr4~113838627~ANK2 intergenic "-," "ANK2," chr4~chr4 113838627 114095572 4 ++ 1.039721 3 0 3 3 16 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr4~130692717~Nchr4~131016653 intergenic "-," "-," chr4~chr4 130692717 131016653 4 ++ 1.039721 4 3 1 4 2 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr4~142254928~Nchr4~142501524 intergenic "-," "-," chr4~chr4 142254928 142501524 2 ++ 0.693147 2 0 2 2 2 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr4~149788033~TBC1D30 intergenic "-," "TBC1D30," chr4~chr12 149788033 65230417 7 +- 1.549826 4 2 2 4 18 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr4~152936612~Nchr6~100785276 intergenic "-," "-," chr4~chr6 152936612 100785276 2 ++ 0.693147 2 0 2 2 2 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr4~184719208~STOX2 intergenic "-," "STOX2," chr4~chr4 184719208 184922478 3 ++ 1.098612 3 2 1 3 8 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr5~66677982~RP11-434D9.1 intergenic "-," "RP11-434D9.1," chr5~chr5 66677982 66915619 5 ++ 1.609438 3 1 2 3 8 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr6~101339921~RP11-81H14.2 intergenic "-," "RP11-81H14.2," chr6~chr12 101339921 68796222 6 ++ 1.791759 5 1 4 5 16 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr6~101339921~RP11-81H14.2 intergenic "-," "RP11-81H14.2," chr6~chr12 101339921 68825008 5 ++ 1.609438 5 1 4 5 2 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr6~110679631~REPS1 intergenic "-," "REPS1," chr6~chr6 110679631 139251235 2 -- 0.693147 2 0 2 2 4 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 3 -- 1.098612 3 3 0 3 8 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr6~115526153~Nchr6~115267959 intergenic "-," "-," chr6~chr6 115526153 115267959 7 -- 1.747868 5 1 4 5 8 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr6~120793248~Nchr6~120995453 intergenic "-," "-," chr6~chr6 120793248 120995453 4 ++ 1.039721 4 1 3 4 12 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr6~120793248~Nchr6~121027536 intergenic "-," "-," chr6~chr6 120793248 121027536 13 ++ 1.991509 10 0 10 10 4 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr6~125594073~Nchr12~61297560 intergenic "-," "-," chr6~chr12 125594073 61297560 6 -- 1.56071 3 0 3 3 14 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr6~137818558~C12orf56 intergenic "-," "C12orf56," chr6~chr12 137818558 64712760 5 -- 1.609438 5 4 1 5 12 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr6~138272041~STX11 intergenic "-," "STX11," chr6~chr6 138272041 144507760 4 -+ 1.386294 2 0 2 2 2 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr6~139832494~C6orf97 intergenic "-," "C6orf97," chr6~chr6 139832494 151932407 26 -- 2.451256 22 10 12 22 210 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr6~139832494~C6orf97 intergenic "-," "C6orf97," chr6~chr6 139832494 151938763 4 -- 1.386294 4 4 0 4 8 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr6~139833773~C6orf97 intergenic "-," "C6orf97," chr6~chr6 139833773 151932407 3 -- 1.098612 2 0 2 2 68 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr6~140684359~STX11 intergenic "-," "STX11," chr6~chr6 140684359 144507760 2 ++ 0.693147 2 0 2 2 12 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr6~141125372~GRIP1 intergenic "-," "GRIP1," chr6~chr12 141125372 66990707 3 -- 0.636514 1 1 0 1 12 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr6~141219325~GRIP1 intergenic "-," "GRIP1," chr6~chr12 141219325 66990707 29 -- 2.449321 19 3 16 19 42 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr6~141219325~Nchr12~65402643 intergenic "-," "-," chr6~chr12 141219325 65402643 31 -- 2.863599 27 9 18 27 56 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr6~141219325~Nchr12~65402652 intergenic "-," "-," chr6~chr12 141219325 65402652 4 -- 1.386294 4 0 4 4 62 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr6~141219325~Nchr6~138187997 intergenic "-," "-," chr6~chr6 141219325 138187997 3 -+ 1.098612 3 2 1 3 8 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr6~141219325~TNFAIP3 intergenic "-," "TNFAIP3," chr6~chr6 141219325 138198287 4 -- 1.386294 3 2 1 3 8 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr6~141446908~Nchr6~139325067 intergenic "-," "-," chr6~chr6 141446908 139325067 14 -+ 2.205598 13 6 7 13 54 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr6~144589054~Nchr6~145395525 intergenic "-," "-," chr6~chr6 144589054 145395525 4 -- 1.386294 4 3 1 4 12 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr6~144589054~SRGAP1 intergenic "-," "SRGAP1,RP11-196H14.2," chr6~chr12 144589054 64436720 17 -- 2.751667 16 10 6 16 44 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr6~144605870~Nchr6~145395525 intergenic "-," "-," chr6~chr6 144605870 145395525 6 -- 1.791759 4 0 4 4 12 TCGA-HB-A3YV-01A-11R-A24X-07 Nchr6~144605870~SRGAP1 intergenic "-," "SRGAP1,RP11-196H14.2," chr6~chr12 144605870 64436720 10 -- 2.163956 8 5 3 8 16 TCGA-HB-A3YV-01A-11R-A24X-07 NchrX~11074056~MID1 intergenic "-," "MID1," chrX~chrX 11074056 10535643 3 -- 1.098612 3 3 0 3 4 TCGA-HB-A3YV-01A-11R-A24X-07 NchrX~64295792~NchrX~64586518 intergenic "-," "-," chrX~chrX 64295792 64586518 2 ++ 0.693147 2 1 1 2 2 TCGA-HB-A3YV-01A-11R-A24X-07 NchrX~64295792~NchrX~64588709 intergenic "-," "-," chrX~chrX 64295792 64588709 8 ++ 2.079442 7 3 4 7 2 TCGA-HB-A3YV-01A-11R-A24X-07 OPRM1~RP1-69D17.4 fusion "OPRM1," "RP1-69D17.4," chr6~chr6 154360969 129861687 4 +- 1.386294 3 2 1 3 8 TCGA-HB-A3YV-01A-11R-A24X-07 PDLIM5~Nchr6~140357761 intergenic "PDLIM5," "-," chr4~chr6 95376535 140357761 53 +- 2.897364 51 26 25 51 72 TCGA-HB-A3YV-01A-11R-A24X-07 PDP1~INA fusion "PDP1," "INA," chr8~chr10 94929307 105046792 5 ++ 1.609438 5 1 4 5 14 TCGA-HB-A3YV-01A-11R-A24X-07 PFKP~Nchr6~121027536 intergenic "PFKP," "-," chr10~chr6 3124653 121027536 3 ++ 0.636514 2 2 0 2 26 TCGA-HB-A3YV-01A-11R-A24X-07 PLEKHG1~Nchr6~138272120 intergenic "PLEKHG1," "-," chr6~chr6 151125877 138272120 8 +- 1.906155 7 3 4 7 12 TCGA-HB-A3YV-01A-11R-A24X-07 PLEKHG1~NchrX~108004509 intergenic "PLEKHG1," "-," chr6~chrX 151065893 108004509 6 -+ 1.56071 6 3 3 6 10 TCGA-HB-A3YV-01A-11R-A24X-07 PLEKHG1~RP11-10J5.1 fusion "PLEKHG1," "RP11-10J5.1," chr6~chr6 151125877 138266939 10 +- 1.886697 9 6 3 9 2 TCGA-HB-A3YV-01A-11R-A24X-07 PLEKHG7~Nchr12~92910255 intergenic "PLEKHG7," "-," chr12~chr12 93122810 92910255 7 -- 1.747868 6 0 6 6 26 TCGA-HB-A3YV-01A-11R-A24X-07 PLP1~C19orf26 fusion "PLP1," "C19orf26," chrX~chr19 103031927 1236120 5 +- 1.609438 5 3 2 5 18 TCGA-HB-A3YV-01A-11R-A24X-07 PLP1~SCAF8 fusion "PLP1," "SCAF8," chrX~chr6 103031927 155095123 14 ++ 2.540036 12 6 6 12 34 TCGA-HB-A3YV-01A-11R-A24X-07 REPS1~STX11 fusion "REPS1," "STX11," chr6~chr6 139242174 144489677 1195 -+ 3.261059 895 656 239 895 1266 TCGA-HB-A3YV-01A-11R-A24X-07 RGS17~Nchr6~100555385 intergenic "RGS17," "-," chr6~chr6 153345397 100555385 6 -+ 1.56071 6 2 4 6 8 TCGA-HB-A3YV-01A-11R-A24X-07 RGS17~Nchr6~153803505 intergenic "RGS17," "-," chr6~chr6 153452259 153803505 10 -- 2.163956 10 8 2 10 42 TCGA-HB-A3YV-01A-11R-A24X-07 RGS17~RP11-14I4.3 fusion "RGS17," "RP11-14I4.3," chr6~chr6 153345397 100524118 7 -+ 1.94591 7 3 4 7 8 TCGA-HB-A3YV-01A-11R-A24X-07 RGS17~SYNE1 fusion "RGS17," "SYNE1," chr6~chr6 153452259 152809638 5 -- 1.332179 5 4 1 5 18 TCGA-HB-A3YV-01A-11R-A24X-07 RMND1~MTHFD1L fusion "RMND1," "MTHFD1L," chr6~chr6 151773151 151226786 220 -+ 3.181961 211 183 28 211 722 TCGA-HB-A3YV-01A-11R-A24X-07 RMND1~MTHFD1L fusion "RMND1," "MTHFD1L," chr6~chr6 151773151 151239713 13 -+ 2.351673 13 10 3 13 168 TCGA-HB-A3YV-01A-11R-A24X-07 RMND1~Nchr6~44011422 intergenic "RMND1," "-," chr6~chr6 151766443 44011422 3 -- 1.098612 3 2 1 3 4 TCGA-HB-A3YV-01A-11R-A24X-07 RNASEH2B~AGXT2 fusion "RNASEH2B," "AGXT2," chr13~chr5 51484276 35010254 4 +- 1.386294 4 1 3 4 2 TCGA-HB-A3YV-01A-11R-A24X-07 RNASEH2B~AGXT2 fusion "RNASEH2B," "AGXT2," chr13~chr5 51484276 35014224 8 +- 1.906155 8 1 7 8 8 TCGA-HB-A3YV-01A-11R-A24X-07 ROR1~Nchr1~55444420 intergenic "ROR1," "-," chr1~chr1 64475048 55444420 3 +- 1.098612 3 3 0 3 2 TCGA-HB-A3YV-01A-11R-A24X-07 RP1-199J3.3~CAPN11 fusion "RP1-199J3.3," "CAPN11," chr6~chr6 99979666 44140039 2 ++ 0.693147 2 2 0 2 8 TCGA-HB-A3YV-01A-11R-A24X-07 RP1-209A6.1~Nchr6~22745302 intergenic "RP1-209A6.1," "-," chr6~chr6 23016954 22745302 4 -- 1.386294 4 3 1 4 2 TCGA-HB-A3YV-01A-11R-A24X-07 RP1-34H18.1~NAV3 fusion "RP1-34H18.1," "NAV3," chr12~chr12 77966046 78334099 4 ++ 1.386294 4 2 2 4 12 TCGA-HB-A3YV-01A-11R-A24X-07 RP11-1E3.1~Nchr5~97314184 intergenic "RP11-1E3.1," "-," chr5~chr5 97006388 97314184 4 ++ 1.039721 3 1 2 3 2 TCGA-HB-A3YV-01A-11R-A24X-07 RP11-1E3.1~RP11-455B3.1 fusion "RP11-1E3.1," "RP11-455B3.1," chr5~chr5 97006388 97217134 3 ++ 1.098612 3 1 2 3 18 TCGA-HB-A3YV-01A-11R-A24X-07 RP11-240M16.1~Nchr12~66468566 intergenic "RP11-240M16.1," "-," chr6~chr12 138293485 66468566 2 +- 0.693147 2 1 1 2 2 TCGA-HB-A3YV-01A-11R-A24X-07 RP11-438E5.1~SNCA fusion "RP11-438E5.1," "SNCA," chr4~chr4 80007416 90650428 6 +- 1.56071 6 5 1 6 4 TCGA-HB-A3YV-01A-11R-A24X-07 RP11-554D15.1~Nchr6~75588576 intergenic "RP11-554D15.1," "-," chr6~chr6 75383864 75588576 4 ++ 1.039721 2 1 1 2 6 TCGA-HB-A3YV-01A-11R-A24X-07 RP11-745O10.4~PALLD fusion "TMBIM4,RP11-745O10.4,TMBIM4," "PALLD," chr12~chr4 66563635 169632732 2 -+ 0.693147 2 2 0 2 4 TCGA-HB-A3YV-01A-11R-A24X-07 RP11-81H14.2~CPM fusion "RP11-81H14.2," "CPM," chr12~chr12 68845147 69265736 2 -- 0.693147 2 1 1 2 6 TCGA-HB-A3YV-01A-11R-A24X-07 RP11-81H14.2~CPM fusion "RP11-81H14.2," "CPM," chr12~chr12 68827064 69265736 3 -- 1.098612 3 0 3 3 4 TCGA-HB-A3YV-01A-11R-A24X-07 RP11-81H14.2~CPM fusion "RP11-81H14.2," "CPM," chr12~chr12 68835844 69265736 7 -- 1.94591 6 1 5 6 20 TCGA-HB-A3YV-01A-11R-A24X-07 RP11-81H14.2~CPM fusion "RP11-81H14.2," "CPM," chr12~chr12 68835844 69279669 16 -- 2.273966 15 5 10 15 50 TCGA-HB-A3YV-01A-11R-A24X-07 RP11-81H14.2~CPM fusion "RP11-81H14.2," "CPM," chr12~chr12 68827064 69279669 10 -- 2.025326 10 6 4 10 64 TCGA-HB-A3YV-01A-11R-A24X-07 RP11-81H14.2~CPM fusion "RP11-81H14.2," "CPM," chr12~chr12 68845147 69279669 4 -- 1.386294 4 2 2 4 22 TCGA-HB-A3YV-01A-11R-A24X-07 RP11-81H14.2~Nchr12~58677492 intergenic "RP11-81H14.2," "-," chr12~chr12 68827064 58677492 3 -- 1.098612 2 0 2 2 20 TCGA-HB-A3YV-01A-11R-A24X-07 RP11-81H14.2~OS9 fusion "RP11-81H14.2," "OS9," chr12~chr12 68835844 58111929 2 -+ 0.693147 2 2 0 2 2 TCGA-HB-A3YV-01A-11R-A24X-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 3 ++ 0.636514 3 2 1 3 6 TCGA-HB-A3YV-01A-11R-A24X-07 RP11-98I9.4~C12orf56 fusion "RP11-98I9.4," "C12orf56," chr6~chr12 99873774 64706532 6 +- 1.56071 6 1 5 6 6 TCGA-HB-A3YV-01A-11R-A24X-07 RP11-98I9.4~C12orf56 fusion "RP11-98I9.4," "C12orf56," chr6~chr12 99873774 64712760 11 +- 2.271869 11 7 4 11 14 TCGA-HB-A3YV-01A-11R-A24X-07 RP5-864K19.4~DAB1 fusion "RP5-864K19.4," "DAB1," chr1~chr1 39325911 57756838 9 +- 1.889159 9 4 5 9 18 TCGA-HB-A3YV-01A-11R-A24X-07 RPS12~Nchr6~151547132 intergenic "RPS12," "-," chr6~chr6 133135726 151547132 3 -- 1.098612 1 1 0 1 68 TCGA-HB-A3YV-01A-11R-A24X-07 RSPO1~COL3A1 fusion "RSPO1," "COL3A1," chr1~chr2 38077349 189866262 4 -+ 1.386294 4 0 4 4 4 TCGA-HB-A3YV-01A-11R-A24X-07 SCAF8~IL20RA fusion "SCAF8," "IL20RA," chr6~chr6 155114110 137338240 42 +- 2.768434 42 33 9 42 108 TCGA-HB-A3YV-01A-11R-A24X-07 SCAF8~IL20RA fusion "SCAF8," "IL20RA," chr6~chr6 155114110 137359268 9 +- 1.889159 9 7 2 9 26 TCGA-HB-A3YV-01A-11R-A24X-07 SCAF8~Nchr12~65381509 intergenic "SCAF8," "-," chr6~chr12 155063152 65381509 2 ++ 0.693147 2 2 0 2 2 TCGA-HB-A3YV-01A-11R-A24X-07 SCAF8~Nchr12~65383011 intergenic "SCAF8," "-," chr6~chr12 155055064 65383011 4 ++ 1.386294 4 0 4 4 8 TCGA-HB-A3YV-01A-11R-A24X-07 SCAF8~RP11-629N8.3 fusion "SCAF8," "RP11-629N8.3," chr6~chr12 155143543 65158617 2 ++ 0.693147 2 1 1 2 14 TCGA-HB-A3YV-01A-11R-A24X-07 SCAF8~RP11-629N8.3 fusion "SCAF8," "RP11-629N8.3," chr6~chr12 155143543 65172851 8 ++ 2.079442 8 2 6 8 26 TCGA-HB-A3YV-01A-11R-A24X-07 SCAF8~TBC1D30 fusion "SCAF8," "TBC1D30," chr6~chr12 155143543 65179661 7 ++ 1.747868 7 4 3 7 20 TCGA-HB-A3YV-01A-11R-A24X-07 SCAF8~UTRN fusion "SCAF8," "UTRN," chr6~chr6 155063152 144820393 13 ++ 2.351673 12 5 7 12 30 TCGA-HB-A3YV-01A-11R-A24X-07 SLC29A1~Nchr6~100628085 intergenic "SLC29A1," "-," chr6~chr6 44195079 100628085 8 ++ 1.906155 8 4 4 8 22 TCGA-HB-A3YV-01A-11R-A24X-07 SLC37A3~Nchr1~58425625 intergenic "SLC37A3," "-," chr7~chr1 140069390 58425625 31 -+ 2.835759 31 15 16 31 40 TCGA-HB-A3YV-01A-11R-A24X-07 SRGAP1~Nchr12~60752377 intergenic "SRGAP1," "-," chr12~chr12 64238663 60752377 17 +- 2.313154 16 8 8 16 48 TCGA-HB-A3YV-01A-11R-A24X-07 SRGAP1~Nchr12~60767729 intergenic "SRGAP1," "-," chr12~chr12 64238663 60767729 17 +- 2.15006 17 10 7 17 40 TCGA-HB-A3YV-01A-11R-A24X-07 SRGAP1~Nchr12~66392926 intergenic "SRGAP1," "-," chr12~chr12 64238663 66392926 3 ++ 1.098612 3 1 2 3 4 TCGA-HB-A3YV-01A-11R-A24X-07 SRGAP1~Nchr12~66469945 intergenic "SRGAP1," "-," chr12~chr12 64238663 66469945 8 ++ 1.906155 7 4 3 7 14 TCGA-HB-A3YV-01A-11R-A24X-07 SRGAP1~Nchr6~153166633 intergenic "SRGAP1," "-," chr12~chr6 64238663 153166633 2 ++ 0.693147 2 0 2 2 6 TCGA-HB-A3YV-01A-11R-A24X-07 STX11~Nchr6~139834341 intergenic "STX11," "-," chr6~chr6 144489813 139834341 11 +- 1.893788 9 7 2 9 170 TCGA-HB-A3YV-01A-11R-A24X-07 SYNE1~ESR1 fusion "SYNE1," "ESR1," chr6~chr6 152565672 152415520 5 -+ 0.950271 5 5 0 5 22 TCGA-HB-A3YV-01A-11R-A24X-07 SYNE1~ESR1 fusion "SYNE1," "ESR1," chr6~chr6 152565672 152419867 3 -+ 1.098612 3 2 1 3 16 TCGA-HB-A3YV-01A-11R-A24X-07 SYNE1~Nchr12~64566475 intergenic "SYNE1," "-," chr6~chr12 152841594 64566475 2 -+ 0.693147 2 0 2 2 4 TCGA-HB-A3YV-01A-11R-A24X-07 SYNE1~Nchr4~149640802 intergenic "SYNE1," "-," chr6~chr4 152694172 149640802 8 -- 1.906155 8 6 2 8 26 TCGA-HB-A3YV-01A-11R-A24X-07 SYNE1~Nchr4~149641887 intergenic "SYNE1," "-," chr6~chr4 152694172 149641887 6 -- 0.867563 6 3 3 6 24 TCGA-HB-A3YV-01A-11R-A24X-07 SYNE1~Nchr6~137707322 intergenic "SYNE1," "-," chr6~chr6 152786393 137707322 2 -- 0.693147 2 1 1 2 8 TCGA-HB-A3YV-01A-11R-A24X-07 SYT1~PPFIA2 fusion "SYT1," "PPFIA2," chr12~chr12 79441142 81851645 23 +- 2.291663 9 3 6 9 6 TCGA-HB-A3YV-01A-11R-A24X-07 TBC1D30~NchrX~102997914 intergenic "TBC1D30," "-," chr12~chrX 65222289 102997914 5 ++ 1.332179 5 4 1 5 2 TCGA-HB-A3YV-01A-11R-A24X-07 TBC1D30~NchrX~103001803 intergenic "TBC1D30," "-," chr12~chrX 65222289 103001803 7 ++ 1.747868 7 3 4 7 16 TCGA-HB-A3YV-01A-11R-A24X-07 TBC1D30~NchrX~113585094 intergenic "TBC1D30," "-," chr12~chrX 65222289 113585094 4 ++ 1.039721 3 2 1 3 2 TCGA-HB-A3YV-01A-11R-A24X-07 TBC1D30~PLP1 fusion "TBC1D30," "PLP1," chr12~chrX 65222289 103031781 2 ++ 0.693147 2 0 2 2 8 TCGA-HB-A3YV-01A-11R-A24X-07 TIAM2~Nchr12~66500967 intergenic "SCAF8,TIAM2," "-," chr6~chr12 155154543 66500967 18 ++ 1.599971 17 9 8 17 34 TCGA-HB-A3YV-01A-11R-A24X-07 TIAM2~Nchr12~66505223 intergenic "SCAF8,TIAM2," "-," chr6~chr12 155154543 66505223 4 ++ 1.039721 4 2 2 4 4 TCGA-HB-A3YV-01A-11R-A24X-07 TMEM233~Nchr12~126193521 intergenic "TMEM233," "-," chr12~chr12 120031839 126193521 12 +- 2.253858 11 8 3 11 34 TCGA-HB-A3YV-01A-11R-A24X-07 TMEM233~Nchr12~126198638 intergenic "TMEM233," "-," chr12~chr12 120031839 126198638 11 +- 1.972247 11 4 7 11 60 TCGA-HB-A3YV-01A-11R-A24X-07 TMEM5~Nchr6~140705515 intergenic "TMEM5," "-," chr12~chr6 64178852 140705515 11 +- 2.145842 10 7 3 10 50 TCGA-HB-A3YV-01A-11R-A24X-07 TMEM5~Nchr6~140707656 intergenic "TMEM5," "-," chr12~chr6 64178852 140707656 16 +- 2.187322 16 11 5 16 70 TCGA-HB-A3YV-01A-11R-A24X-07 TMEM5~Nchr6~140764803 intergenic "TMEM5," "-," chr12~chr6 64178852 140764803 28 +- 2.282424 24 21 3 24 26 TCGA-HB-A3YV-01A-11R-A24X-07 TMEM5~Nchr6~140818406 intergenic "TMEM5," "-," chr12~chr6 64178852 140818406 13 +- 2.458311 12 8 4 12 24 TCGA-HB-A3YV-01A-11R-A24X-07 TMEM5~Nchr6~140819644 intergenic "TMEM5," "-," chr12~chr6 64179732 140819644 3 +- 1.098612 3 2 1 3 2 TCGA-HB-A3YV-01A-11R-A24X-07 TMEM5~Nchr6~140838310 intergenic "TMEM5," "-," chr12~chr6 64178852 140838310 29 +- 2.05728 25 20 5 25 68 TCGA-HB-A3YV-01A-11R-A24X-07 TMSB15B~ASCC3 fusion "TMSB15B," "ASCC3," chrX~chr6 103217296 101037935 2 +- 0.693147 2 2 0 2 12 TCGA-HB-A3YV-01A-11R-A24X-07 TPD52L1~Nchr1~165096665 intergenic "TPD52L1," "-," chr6~chr1 125475116 165096665 6 ++ 1.56071 6 2 4 6 8 TCGA-HB-A3YV-01A-11R-A24X-07 TPT1~Nchr6~144522012 intergenic "TPT1," "-," chr13~chr6 45914301 144522012 5 -- 0.500402 4 4 0 4 2 TCGA-HB-A3YV-01A-11R-A24X-07 TSPAN31~Nchr6~140213444 intergenic "TSPAN31,CDK4," "-," chr12~chr6 58142965 140213444 16 -- 2.252728 14 5 9 14 64 TCGA-HB-A3YV-01A-11R-A24X-07 TSPAN31~Nchr6~140213444 intergenic "TSPAN31,CDK4," "-," chr12~chr6 58143237 140213444 8 -- 1.906155 8 5 3 8 16 TCGA-HB-A3YV-01A-11R-A24X-07 TTC28~Nchr8~11801231 intergenic "TTC28," "-," chr22~chr8 28838874 11801231 6 -+ 1.329661 6 3 3 6 6 TCGA-HB-A3YV-01A-11R-A24X-07 TXNRD2~EVX1 fusion "TXNRD2," "EVX1," chr22~chr7 19918553 27284667 6 -+ 1.329661 6 0 6 6 8 TCGA-HB-A3YV-01A-11R-A24X-07 USP15~DPY19L2 fusion "USP15," "DPY19L2," chr12~chr12 62743088 63976305 4 +- 1.039721 4 0 4 4 20 TCGA-HB-A3YV-01A-11R-A24X-07 USP15~Nchr12~103107944 intergenic "USP15," "-," chr12~chr12 62715390 103107944 9 +- 2.197225 9 4 5 9 36 TCGA-HB-A3YV-01A-11R-A24X-07 USP15~Nchr12~68472350 intergenic "USP15," "-," chr12~chr12 62719714 68472350 2 +- 0.693147 2 1 1 2 8 TCGA-HB-A3YV-01A-11R-A24X-07 USP15~Nchr12~68489751 intergenic "USP15," "-," chr12~chr12 62743088 68489751 65 +- 2.692186 37 33 4 37 276 TCGA-HB-A3YV-01A-11R-A24X-07 USP15~Nchr12~68489751 intergenic "USP15," "-," chr12~chr12 62719714 68489751 209 +- 3.293233 139 116 23 139 212 TCGA-HB-A3YV-01A-11R-A24X-07 USP15~Nchr12~68512337 intergenic "USP15," "-," chr12~chr12 62743088 68512337 2 +- 0.693147 2 2 0 2 20 TCGA-HB-A3YV-01A-11R-A24X-07 USP15~Nchr12~68512337 intergenic "USP15," "-," chr12~chr12 62719714 68512337 6 +- 1.56071 6 4 2 6 6 TCGA-HB-A3YV-01A-11R-A24X-07 USP15~Nchr12~68512906 intergenic "USP15," "-," chr12~chr12 62743088 68512906 9 +- 1.83102 8 4 4 8 22 TCGA-HB-A3YV-01A-11R-A24X-07 USP15~Nchr12~68512906 intergenic "USP15," "-," chr12~chr12 62719714 68512906 2 +- 0.693147 2 1 1 2 8 TCGA-HB-A3YV-01A-11R-A24X-07 USP15~Nchr12~68519813 intergenic "USP15," "-," chr12~chr12 62743088 68519813 3 +- 0.636514 3 2 1 3 334 TCGA-HB-A3YV-01A-11R-A24X-07 USP15~Nchr6~140705515 intergenic "USP15," "-," chr12~chr6 62719714 140705515 5 +- 1.332179 5 2 3 5 60 TCGA-HB-A3YV-01A-11R-A24X-07 USP45~Nchr6~100316104 intergenic "USP45," "-," chr6~chr6 99924019 100316104 3 -+ 1.098612 3 2 1 3 6 TCGA-HB-A3YV-01A-11R-A24X-07 UTRN~Nchr4~152934941 intergenic "UTRN," "-," chr6~chr4 144613043 152934941 4 ++ 1.386294 4 2 2 4 8 TCGA-HB-A3YV-01A-11R-A24X-07 UTRN~Nchr4~152935213 intergenic "UTRN," "-," chr6~chr4 144613043 152935213 2 ++ 0.693147 1 1 0 1 24 TCGA-HB-A3YV-01A-11R-A24X-07 UTRN~Nchr6~138174636 intergenic "UTRN," "-," chr6~chr6 144724320 138174636 7 ++ 1.747868 4 4 0 4 6 TCGA-HB-A3YV-01A-11R-A24X-07 UTRN~Nchr6~138181562 intergenic "UTRN," "-," chr6~chr6 144724320 138181562 39 ++ 2.390559 21 16 5 21 24 TCGA-HB-A3YV-01A-11R-A24X-07 UTRN~Nchr6~138181746 intergenic "UTRN," "-," chr6~chr6 144724320 138181746 7 ++ 1.94591 2 2 0 2 6 TCGA-HB-A3YV-01A-11R-A24X-07 UTRN~Nchr6~138187997 intergenic "UTRN," "-," chr6~chr6 144724320 138187997 3 ++ 1.098612 3 3 0 3 2 TCGA-HB-A3YV-01A-11R-A24X-07 UTRN~Nchr6~140348079 intergenic "UTRN," "-," chr6~chr6 144613043 140348079 74 +- 3.016123 73 29 44 73 176 TCGA-HB-A3YV-01A-11R-A24X-07 UTRN~RP1-121G13.2 fusion "UTRN," "RP1-121G13.2," chr6~chr6 144613043 100874994 9 ++ 1.889159 9 2 7 9 20 TCGA-HB-A3YV-01A-11R-A24X-07 UTRN~WIF1 fusion "UTRN," "WIF1," chr6~chr12 144809970 65471634 4 +- 1.039721 4 3 1 4 36 TCGA-HB-A3YV-01A-11R-A24X-07 VEGFC~Nchr9~109915713 intergenic "VEGFC," "-," chr4~chr9 177713319 109915713 6 -+ 1.791759 6 2 4 6 12 TCGA-HB-A3YV-01A-11R-A24X-07 VMP1~TK1 fusion "VMP1," "TK1," chr17~chr17 57785109 76171699 79 +- 2.880755 77 3 74 77 136 TCGA-HB-A3YV-01A-11R-A24X-07 WDFY3~PLAGL1 fusion "WDFY3," "PLAGL1," chr4~chr6 85887362 144290115 24 -- 2.719377 30 1 23 30 24 TCGA-HB-A3YV-01A-11R-A24X-07 WDFY3~PLAGL1 fusion "WDFY3," "PLAGL1," chr4~chr6 85887362 144306311 4 -- 1.386294 4 0 4 4 42 TCGA-HB-A3YV-01A-11R-A24X-07 YEATS4~KIAA1244 fusion "YEATS4," "KIAA1244," chr12~chr6 69753803 138612870 142 ++ 3.099579 139 65 74 139 252 TCGA-HB-A3YV-01A-11R-A24X-07 ZBTB2~Nchr6~151020601 intergenic "ZBTB2," "-," chr6~chr6 151712555 151020601 3 -- 1.098612 3 2 1 3 4 TCGA-HB-A3YV-01A-11R-A24X-07 ZDHHC17~SYT1 fusion "ZDHHC17," "SYT1," chr12~chr12 77199219 79349242 11 ++ 2.145842 11 8 3 11 52 TCGA-HB-A3YV-01A-11R-A24X-07 ZDHHC17~SYT1 fusion "ZDHHC17," "SYT1," chr12~chr12 77199219 79371579 7 ++ 1.747868 6 3 3 6 28 TCGA-HB-A3YV-01A-11R-A24X-07 ZNF578~Nchr4~17796675 intergenic "ZNF578," "-," chr19~chr4 52960211 17796675 2 +- 0.693147 2 2 0 2 12 TCGA-HB-A3YV-01A-11R-A24X-07 ZNF732~RP1-292B18.4 fusion "ZNF732," "RP1-292B18.4," chr4~chr6 299097 151409516 6 -- 1.791759 6 3 3 6 8 TCGA-HB-A3YV-01A-11R-A24X-07 ZNF732~RP1-292B18.4 fusion "ZNF732," "RP1-292B18.4," chr4~chr6 289227 151409516 5 -- 0.950271 4 0 4 4 14 TCGA-HB-A3YV-01A-11R-A24X-07 ZNF732~RP1-292B18.4 fusion "ZNF732," "RP1-292B18.4," chr4~chr6 289227 151472273 3 -- 0.636514 3 1 2 3 8 TCGA-FX-A48G-01A-11R-A24X-07 AL163953.3~Nchr14~54057853 intergenic "AL163953.3," "-," chr14~chr14 53836219 54057853 7 ++ 1.277034 3 0 3 3 6 TCGA-FX-A48G-01A-11R-A24X-07 CNTLN~Nchr10~42972709 intergenic "CNTLN," "-," chr9~chr10 17143374 42972709 4 ++ 0.562335 4 4 0 4 8 TCGA-FX-A48G-01A-11R-A24X-07 GNA13~Nchr12~48987502 intergenic "GNA13," "-," chr17~chr12 63049620 48987502 1388 -+ 3.138826 1359 1076 283 1359 1658 TCGA-FX-A48G-01A-11R-A24X-07 GPC3~Nchr12~46863936 intergenic "GPC3," "-," chrX~chr12 133087077 46863936 4 -+ 1.039721 1 1 0 1 8 TCGA-FX-A48G-01A-11R-A24X-07 GPC3~Nchr12~47046173 intergenic "GPC3," "-," chrX~chr12 133087077 47046173 8 -+ 1.559581 5 3 2 5 6 TCGA-FX-A48G-01A-11R-A24X-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 118 -- 2.371572 118 118 0 118 30 TCGA-FX-A48G-01A-11R-A24X-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 38 -- 2.144611 37 0 37 37 56 TCGA-FX-A48G-01A-11R-A24X-07 MED24~Nchr17~61968227 intergenic "MED24," "-," chr17~chr17 38189598 61968227 2 -- 0.693147 2 1 1 2 8 TCGA-FX-A48G-01A-11R-A24X-07 MED24~Nchr17~61968810 intergenic "MED24," "-," chr17~chr17 38189598 61968810 80 -- 2.885365 79 25 54 79 204 TCGA-FX-A48G-01A-11R-A24X-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 7 -+ 1.549826 2 0 2 2 4 TCGA-FX-A48G-01A-11R-A24X-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 7 ++ 1.277034 7 1 6 7 80 TCGA-FX-A48G-01A-11R-A24X-07 Nchr19~6199487~ADK intergenic "-," "ADK," chr19~chr10 6199487 76429941 6 -+ 1.56071 6 6 0 6 6 TCGA-FX-A48G-01A-11R-A24X-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 27 -+ 2.518879 26 13 13 26 240 TCGA-FX-A48G-01A-11R-A24X-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 9 ++ 1.427061 1 1 0 1 12 TCGA-FX-A48G-01A-11R-A24X-07 Nchr21~17652183~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17652183 17859810 6 ++ 1.242453 2 1 1 2 4 TCGA-FX-A48G-01A-11R-A24X-07 Nchr2~177065785~Nchr2~177065913 intergenic "-," "-," chr2~chr2 177065785 177065913 2 -- 0.693147 2 0 2 2 16 TCGA-FX-A48G-01A-11R-A24X-07 Nchr3~47206290~RBM6 intergenic "-," "RBM6," chr3~chr3 47206290 50112634 10 -+ 1.748067 10 0 10 10 6 TCGA-FX-A48G-01A-11R-A24X-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 11 -- 1.594167 11 11 0 11 4 TCGA-FX-A48G-01A-11R-A24X-07 Nchr8~128691459~Nchr8~128433208 intergenic "-," "-," chr8~chr8 128691459 128433208 4 -- 1.039721 4 3 1 4 8 TCGA-FX-A48G-01A-11R-A24X-07 NchrX~33743745~DMD intergenic "-," "DMD," chrX~chrX 33743745 31140047 2 -- 0.693147 2 1 1 2 16 TCGA-FX-A48G-01A-11R-A24X-07 NchrX~33744619~DMD intergenic "-," "DMD," chrX~chrX 33744619 31140047 6 -- 1.56071 5 1 4 5 18 TCGA-FX-A48G-01A-11R-A24X-07 PAPSS2~Nchr10~89817751 intergenic "PAPSS2," "-," chr10~chr10 89419765 89817751 3 ++ 0.636514 3 1 2 3 4 TCGA-FX-A48G-01A-11R-A24X-07 PTGIS~Nchr20~48224151 intergenic "PTGIS," "-," chr20~chr20 48166603 48224151 5 -- 1.05492 5 0 5 5 8 TCGA-FX-A48G-01A-11R-A24X-07 PTGIS~Nchr20~48225715 intergenic "PTGIS," "-," chr20~chr20 48166603 48225715 13 -- 2.138397 12 8 4 12 26 TCGA-FX-A48G-01A-11R-A24X-07 RPTOR~GPC3 fusion "RPTOR," "GPC3," chr17~chrX 78519591 133087238 6 +- 1.791759 5 3 2 5 32 TCGA-FX-A48G-01A-11R-A24X-07 SAMD5~RP11-307P5.1 fusion "SAMD5," "RP11-307P5.1," chr6~chr6 147830523 148054865 7 ++ 1.747868 7 3 4 7 16 TCGA-FX-A48G-01A-11R-A24X-07 SAMD5~RP11-307P5.1 fusion "SAMD5," "RP11-307P5.1," chr6~chr6 147830523 148058453 4 ++ 1.386294 4 2 2 4 10 TCGA-FX-A48G-01A-11R-A24X-07 SETD2~RBM6 fusion "SETD2," "RBM6," chr3~chr3 47205344 50112606 3 -+ 0.636514 3 1 2 3 1314 TCGA-FX-A48G-01A-11R-A24X-07 SETD2~RBM6 fusion "SETD2," "RBM6," chr3~chr3 47205344 50112634 903 -+ 3.268231 880 166 714 880 1272 TCGA-FX-A48G-01A-11R-A24X-07 SMC5~TJP2 fusion "SMC5," "TJP2," chr9~chr9 72962954 71796798 3 ++ 0.636514 3 3 0 3 4 TCGA-DX-A23U-01A-11R-A26T-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48265899 94038119 5 -+ 1.332179 1 0 1 1 68 TCGA-DX-A23U-01A-11R-A26T-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266533 94038123 2 -+ 0.693147 2 1 1 2 116 TCGA-DX-A23U-01A-11R-A26T-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273296 94045741 5 -+ 0.950271 4 3 1 4 52 TCGA-DX-A23U-01A-11R-A26T-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271790 94047830 2 -+ 0.693147 2 1 1 2 28 TCGA-DX-A23U-01A-11R-A26T-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264845 94050330 2 -+ 0.693147 2 1 1 2 74 TCGA-DX-A23U-01A-11R-A26T-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266782 94052369 2 -+ 0.693147 2 1 1 2 92 TCGA-DX-A23U-01A-11R-A26T-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267688 94056536 3 -+ 1.098612 1 1 0 1 22 TCGA-DX-A23U-01A-11R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265237 189850391 14 -+ 1.331664 9 8 1 9 2 TCGA-DX-A23U-01A-11R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266264 189856240 6 -+ 1.329661 1 1 0 1 10 TCGA-DX-A23U-01A-11R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272412 189856910 2 -+ 0.693147 2 1 1 2 4 TCGA-DX-A23U-01A-11R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266738 189861891 7 -+ 1.004242 1 0 1 1 4 TCGA-DX-A23U-01A-11R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268836 189862999 6 -+ 1.242453 5 3 2 5 14 TCGA-DX-A23U-01A-11R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265891 189866123 5 -+ 1.609438 3 2 1 3 14 TCGA-DX-A23U-01A-11R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266555 189867718 2 -+ 0.693147 2 0 2 2 18 TCGA-DX-A23U-01A-11R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265237 189868137 3 -+ 1.098612 2 2 0 2 8 TCGA-DX-A23U-01A-11R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265891 189868137 4 -+ 1.039721 1 1 0 1 10 TCGA-DX-A23U-01A-11R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266822 189868137 3 -+ 1.098612 1 0 1 1 32 TCGA-DX-A23U-01A-11R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48273871 189868718 20 -+ 0.82372 16 15 1 16 2 TCGA-DX-A23U-01A-11R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268178 189870076 18 -+ 0.65467 18 17 1 18 16 TCGA-DX-A23U-01A-11R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265891 189872611 4 -+ 1.039721 1 0 1 1 4 TCGA-DX-A23U-01A-11R-A26T-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48273560 23 +- 2.185889 15 1 14 15 54 TCGA-DX-A23U-01A-11R-A26T-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047143 48273889 10 +- 1.0889 8 1 7 8 24 TCGA-DX-A23U-01A-11R-A26T-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94039133 189859267 7 ++ 0.796312 5 1 4 5 4 TCGA-DX-A23U-01A-11R-A26T-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94047143 189859772 8 ++ 0.735622 6 0 6 6 12 TCGA-DX-A23U-01A-11R-A26T-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94050374 189860418 7 ++ 1.94591 4 1 3 4 28 TCGA-DX-A23U-01A-11R-A26T-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94049756 189864196 9 ++ 1.83102 7 0 7 7 36 TCGA-DX-A23U-01A-11R-A26T-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94049756 189868460 7 ++ 1.549826 5 1 4 5 4 TCGA-DX-A23U-01A-11R-A26T-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94045815 189870076 7 ++ 1.475076 5 2 3 5 16 TCGA-DX-A23U-01A-11R-A26T-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189867077 48266156 18 +- 1.827175 8 8 0 8 6 TCGA-DX-A23U-01A-11R-A26T-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189857666 48273026 4 +- 1.039721 2 1 1 2 12 TCGA-DX-A23U-01A-11R-A26T-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189869090 94038634 8 ++ 1.213008 5 5 0 5 4 TCGA-DX-A23U-01A-11R-A26T-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189868470 94039038 8 ++ 1.494175 5 5 0 5 12 TCGA-DX-A23U-01A-11R-A26T-07 COPA~Nchr21~19008701 intergenic "COPA," "-," chr1~chr21 160302238 19008701 2 -+ 0.693147 2 0 2 2 182 TCGA-DX-A23U-01A-11R-A26T-07 COPA~Nchr21~19008713 intergenic "COPA," "-," chr1~chr21 160302238 19008713 19 -+ 2.506662 18 7 11 18 174 TCGA-DX-A23U-01A-11R-A26T-07 COPA~Nchr21~19016120 intergenic "COPA," "-," chr1~chr21 160302238 19016120 71 -+ 2.958761 68 43 25 68 148 TCGA-DX-A23U-01A-11R-A26T-07 COPA~Nchr21~19049785 intergenic "COPA," "-," chr1~chr21 160302238 19049785 2 -+ 0.693147 2 0 2 2 6 TCGA-DX-A23U-01A-11R-A26T-07 COPA~SLAMF1 fusion "COPA," "SLAMF1," chr1~chr1 160275223 160604682 5 -- 1.609438 5 3 2 5 66 TCGA-DX-A23U-01A-11R-A26T-07 COPA~SLAMF1 fusion "COPA," "SLAMF1," chr1~chr1 160275223 160604687 11 -- 2.397895 11 6 5 11 68 TCGA-DX-A23U-01A-11R-A26T-07 CPT2~Nchr1~53610159 intergenic "CPT2," "-," chr1~chr1 53668101 53610159 4 ++ 1.386294 4 2 2 4 12 TCGA-DX-A23U-01A-11R-A26T-07 CPT2~Nchr1~56249869 intergenic "CPT2," "-," chr1~chr1 53668101 56249869 2 +- 0.693147 2 1 1 2 1214 TCGA-DX-A23U-01A-11R-A26T-07 CPT2~Nchr1~56256970 intergenic "CPT2," "-," chr1~chr1 53668101 56256970 5 +- 1.332179 4 4 0 4 1078 TCGA-DX-A23U-01A-11R-A26T-07 CPT2~Nchr1~56256977 intergenic "CPT2," "-," chr1~chr1 53668101 56256977 427 +- 3.172142 429 229 167 429 1172 TCGA-DX-A23U-01A-11R-A26T-07 CPT2~Nchr1~56261022 intergenic "CPT2," "-," chr1~chr1 53668101 56261022 8 +- 1.906155 7 3 4 7 2524 TCGA-DX-A23U-01A-11R-A26T-07 CPT2~Nchr1~56285919 intergenic "CPT2," "-," chr1~chr1 53668101 56285919 5 +- 1.332179 5 2 3 5 4 TCGA-DX-A23U-01A-11R-A26T-07 CPT2~Nchr1~56350555 intergenic "CPT2," "-," chr1~chr1 53668101 56350555 11 +- 1.84622 8 7 1 8 2 TCGA-DX-A23U-01A-11R-A26T-07 CREG1~Nchr1~195388740 intergenic "CREG1," "-," chr1~chr1 167522364 195388740 2 -+ 0.693147 2 2 0 2 2 TCGA-DX-A23U-01A-11R-A26T-07 CREG1~Nchr1~195388740 intergenic "CREG1," "-," chr1~chr1 167522489 195388740 2 -+ 0.693147 2 2 0 2 46 TCGA-DX-A23U-01A-11R-A26T-07 CREG1~Nchr1~195388740 intergenic "CREG1," "-," chr1~chr1 167522625 195388740 23 -+ 2.487258 23 14 9 23 38 TCGA-DX-A23U-01A-11R-A26T-07 DAB1~Nchr1~195393387 intergenic "DAB1," "-," chr1~chr1 57537195 195393387 3 -- 1.098612 3 1 2 3 8 TCGA-DX-A23U-01A-11R-A26T-07 DAB1~Nchr1~58425625 intergenic "DAB1," "-," chr1~chr1 57602216 58425625 2 -+ 0.693147 2 0 2 2 6 TCGA-DX-A23U-01A-11R-A26T-07 DAB1~OMA1 fusion "DAB1," "OMA1," chr1~chr1 57602216 58946846 15 -- 2.211069 13 2 11 13 54 TCGA-DX-A23U-01A-11R-A26T-07 DAB1~TMEM59 fusion "DAB1," "TMEM59," chr1~chr1 57756636 54507478 10 -- 2.025326 9 5 4 9 20 TCGA-DX-A23U-01A-11R-A26T-07 DAB1~TTC22 fusion "DAB1," "TTC22," chr1~chr1 57889602 55251817 6 -- 1.56071 6 5 1 6 8 TCGA-DX-A23U-01A-11R-A26T-07 DNM3~Nchr1~203568287 intergenic "DNM3," "-," chr1~chr1 172100428 203568287 2 +- 0.693147 2 2 0 2 6 TCGA-DX-A23U-01A-11R-A26T-07 FGGY~ATP2B4 fusion "FGGY," "ATP2B4," chr1~chr1 59922748 203676990 14 ++ 2.441015 8 3 5 8 30 TCGA-DX-A23U-01A-11R-A26T-07 FGGY~Nchr1~155064307 intergenic "FGGY," "-," chr1~chr1 59844509 155064307 36 ++ 2.861302 29 18 11 29 58 TCGA-DX-A23U-01A-11R-A26T-07 HLA-B~Nchr6~29902006 intergenic "HLA-B," "-," chr6~chr6 31323352 29902006 3 ++ 1.098612 3 3 0 3 40 TCGA-DX-A23U-01A-11R-A26T-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 110 -- 2.039927 110 110 0 110 124 TCGA-DX-A23U-01A-11R-A26T-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 63 -- 1.954924 63 1 61 63 42 TCGA-DX-A23U-01A-11R-A26T-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 346 -- 2.631819 199 46 151 199 2 TCGA-DX-A23U-01A-11R-A26T-07 HN1~Nchr2~174296244 intergenic "HN1," "-," chr17~chr2 73143651 174296244 37 -- 1.267754 19 19 0 19 2 TCGA-DX-A23U-01A-11R-A26T-07 HYDIN~Nchr1~203867716 intergenic "HYDIN," "-," chr16~chr1 71094407 203867716 6 -+ 1.791759 5 2 3 5 24 TCGA-DX-A23U-01A-11R-A26T-07 HYDIN~Nchr7~39873446 intergenic "HYDIN," "-," chr16~chr7 71094407 39873446 10 -+ 1.748067 10 0 10 10 140 TCGA-DX-A23U-01A-11R-A26T-07 HYDIN~SSBP3 fusion "HYDIN," "SSBP3," chr16~chr1 71094407 54747200 140 -- 3.15019 125 44 81 125 226 TCGA-DX-A23U-01A-11R-A26T-07 LRP8~HYDIN fusion "LRP8," "HYDIN," chr1~chr16 53792545 71127838 303 -- 3.36704 284 136 148 284 500 TCGA-DX-A23U-01A-11R-A26T-07 NBPF8~Nchr1~147727323 intergenic "NBPF8," "-," chr1~chr1 144593771 147727323 4 +- 1.386294 1 0 1 1 6 TCGA-DX-A23U-01A-11R-A26T-07 NRIP1~Nchr1~55892166 intergenic "NRIP1," "-," chr21~chr1 16386665 55892166 30 -- 2.701935 29 13 16 29 60 TCGA-DX-A23U-01A-11R-A26T-07 NRIP1~Nchr1~55892166 intergenic "NRIP1," "-," chr21~chr1 16415816 55892166 11 -- 2.019815 10 7 3 10 34 TCGA-DX-A23U-01A-11R-A26T-07 NRIP1~Nchr1~55892166 intergenic "NRIP1," "-," chr21~chr1 16437066 55892166 2 -- 0.693147 2 1 1 2 12 TCGA-DX-A23U-01A-11R-A26T-07 NRIP1~Nchr1~55892169 intergenic "NRIP1," "-," chr21~chr1 16386665 55892169 3 -- 0.636514 2 1 1 2 56 TCGA-DX-A23U-01A-11R-A26T-07 NRIP1~Nchr1~55892169 intergenic "NRIP1," "-," chr21~chr1 16415816 55892169 4 -- 1.039721 4 4 0 4 36 TCGA-DX-A23U-01A-11R-A26T-07 Nchr10~7144561~C10orf112 intergenic "-," "C10orf112," chr10~chr10 7144561 19546613 26 -+ 2.395274 21 3 18 21 72 TCGA-DX-A23U-01A-11R-A26T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 44 -+ 2.420447 19 0 19 19 6 TCGA-DX-A23U-01A-11R-A26T-07 Nchr12~102709268~Nchr12~103083884 intergenic "-," "-," chr12~chr12 102709268 103083884 4 ++ 1.039721 3 1 2 3 16 TCGA-DX-A23U-01A-11R-A26T-07 Nchr14~90085372~FOXN3 intergenic "-," "FOXN3," chr14~chr14 90085372 89878834 4 -- 1.386294 3 3 0 3 6 TCGA-DX-A23U-01A-11R-A26T-07 Nchr15~24186976~DAB1 intergenic "-," "DAB1," chr15~chr1 24186976 57965625 3 +- 1.098612 2 2 0 2 2 TCGA-DX-A23U-01A-11R-A26T-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 11 -+ 2.145842 11 3 8 11 162 TCGA-DX-A23U-01A-11R-A26T-07 Nchr1~160347868~DAB1 intergenic "-," "DAB1," chr1~chr1 160347868 58208756 4 ++ 1.386294 4 4 0 4 26 TCGA-DX-A23U-01A-11R-A26T-07 Nchr1~160347872~DAB1 intergenic "-," "DAB1," chr1~chr1 160347872 58208756 5 ++ 1.609438 5 3 2 5 28 TCGA-DX-A23U-01A-11R-A26T-07 Nchr1~160347903~DAB1 intergenic "-," "DAB1," chr1~chr1 160347903 58208756 5 ++ 1.332179 4 3 1 4 30 TCGA-DX-A23U-01A-11R-A26T-07 Nchr1~53796923~TUFT1 intergenic "-," "TUFT1," chr1~chr1 53796923 151546746 20 ++ 2.276423 19 13 6 19 28 TCGA-DX-A23U-01A-11R-A26T-07 Nchr1~55890236~DNM3 intergenic "-," "DNM3," chr1~chr1 55890236 172222713 3 -+ 1.098612 2 2 0 2 4 TCGA-DX-A23U-01A-11R-A26T-07 Nchr1~56337236~Nchr1~53638870 intergenic "-," "-," chr1~chr1 56337236 53638870 16 +- 1.890363 15 9 6 15 170 TCGA-DX-A23U-01A-11R-A26T-07 Nchr1~56337236~Nchr1~53639531 intergenic "-," "-," chr1~chr1 56337236 53639531 5 +- 1.609438 5 4 1 5 98 TCGA-DX-A23U-01A-11R-A26T-07 Nchr1~58829412~DAB1 intergenic "-," "DAB1," chr1~chr1 58829412 58270615 7 ++ 1.549826 5 0 5 5 6 TCGA-DX-A23U-01A-11R-A26T-07 Nchr1~58851492~DAB1 intergenic "-," "DAB1," chr1~chr1 58851492 58270615 6 ++ 1.56071 5 1 4 5 20 TCGA-DX-A23U-01A-11R-A26T-07 Nchr1~58867406~DAB1 intergenic "-," "DAB1," chr1~chr1 58867406 58270615 4 ++ 1.386294 3 0 3 3 10 TCGA-DX-A23U-01A-11R-A26T-07 Nchr1~59250977~DAB1 intergenic "-," "DAB1," chr1~chr1 59250977 57611102 130 +- 3.151214 121 59 62 121 302 TCGA-DX-A23U-01A-11R-A26T-07 Nchr20~29653686~Nchr9~68422207 intergenic "-," "-," chr20~chr9 29653686 68422207 4 +- 1.386294 3 3 0 3 6 TCGA-DX-A23U-01A-11R-A26T-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 4 ++ 1.386294 3 1 2 3 20 TCGA-DX-A23U-01A-11R-A26T-07 Nchr2~177065929~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065929 177065788 2 ++ 0.693147 2 0 2 2 38 TCGA-DX-A23U-01A-11R-A26T-07 Nchr3~112316693~Nchr3~112316793 intergenic "-," "-," chr3~chr3 112316693 112316793 2 -- 0.693147 2 0 2 2 2 TCGA-DX-A23U-01A-11R-A26T-07 Nchr3~18105864~Nchr3~18306537 intergenic "-," "-," chr3~chr3 18105864 18306537 2 ++ 0.693147 2 0 2 2 56 TCGA-DX-A23U-01A-11R-A26T-07 Nchr3~18105864~Nchr3~18306540 intergenic "-," "-," chr3~chr3 18105864 18306540 3 ++ 1.098612 3 0 3 3 56 TCGA-DX-A23U-01A-11R-A26T-07 Nchr3~18105864~Nchr3~18308510 intergenic "-," "-," chr3~chr3 18105864 18308510 5 ++ 1.332179 4 1 3 4 92 TCGA-DX-A23U-01A-11R-A26T-07 Nchr3~18105864~Nchr3~18351731 intergenic "-," "-," chr3~chr3 18105864 18351731 19 ++ 2.360736 19 0 19 19 68 TCGA-DX-A23U-01A-11R-A26T-07 Nchr3~18106818~Nchr3~18327234 intergenic "-," "-," chr3~chr3 18106818 18327234 2 ++ 0.693147 2 2 0 2 14 TCGA-DX-A23U-01A-11R-A26T-07 Nchr3~18106818~Nchr3~18351731 intergenic "-," "-," chr3~chr3 18106818 18351731 7 ++ 1.747868 7 3 4 7 70 TCGA-DX-A23U-01A-11R-A26T-07 Nchr3~18113708~Nchr3~18351731 intergenic "-," "-," chr3~chr3 18113708 18351731 4 ++ 1.386294 4 1 3 4 78 TCGA-DX-A23U-01A-11R-A26T-07 OMA1~Nchr1~157250504 intergenic "OMA1," "-," chr1~chr1 58996273 157250504 2 -+ 0.693147 1 1 0 1 52 TCGA-DX-A23U-01A-11R-A26T-07 OMA1~Nchr1~157250509 intergenic "OMA1," "-," chr1~chr1 58999625 157250509 2 -+ 0.693147 2 2 0 2 34 TCGA-DX-A23U-01A-11R-A26T-07 OMA1~Nchr1~157250509 intergenic "OMA1," "-," chr1~chr1 58996273 157250509 6 -+ 1.791759 6 2 4 6 50 TCGA-DX-A23U-01A-11R-A26T-07 OMA1~Nchr1~157252368 intergenic "OMA1," "-," chr1~chr1 58999625 157252368 9 -+ 2.043192 9 1 8 9 30 TCGA-DX-A23U-01A-11R-A26T-07 OMA1~Nchr1~157252368 intergenic "OMA1," "-," chr1~chr1 58999830 157252368 3 -+ 0.636514 3 0 3 3 10 TCGA-DX-A23U-01A-11R-A26T-07 PEA15~SNX27 fusion "PEA15," "SNX27," chr1~chr1 160175312 151630711 15 ++ 1.956463 11 10 1 11 64 TCGA-DX-A23U-01A-11R-A26T-07 PIGM~PEA15 fusion "PIGM," "PEA15," chr1~chr1 160001703 160181333 2 -+ 0.693147 2 0 2 2 6 TCGA-DX-A23U-01A-11R-A26T-07 PKN2~Nchr1~196168572 intergenic "PKN2," "-," chr1~chr1 89237562 196168572 5 +- 1.332179 1 1 0 1 8 TCGA-DX-A23U-01A-11R-A26T-07 PKN2~Nchr1~196172871 intergenic "PKN2," "-," chr1~chr1 89237562 196172871 33 +- 2.463902 31 16 15 31 42 TCGA-DX-A23U-01A-11R-A26T-07 PRDX6~SLC9A11 fusion "PRDX6," "SLC9A11," chr1~chr1 173450621 173495853 12 +- 1.979205 11 8 3 11 16 TCGA-DX-A23U-01A-11R-A26T-07 PRPF3~OTUD7B fusion "PRPF3," "OTUD7B," chr1~chr1 150318967 149943179 28 +- 2.326418 27 14 13 27 88 TCGA-DX-A23U-01A-11R-A26T-07 RAB3B~PKN2 fusion "RAB3B," "PKN2," chr1~chr1 52442562 89206671 22 -+ 2.350327 21 12 9 21 60 TCGA-DX-A23U-01A-11R-A26T-07 RFX5~GOLPH3L fusion "RFX5,RFX5,RFX5," "GOLPH3L," chr1~chr1 151315550 150621224 10 -- 2.302585 10 5 5 10 22 TCGA-DX-A23U-01A-11R-A26T-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 5 +- 0.950271 5 0 5 5 2 TCGA-DX-A23U-01A-11R-A26T-07 SDK1~BRAT1 fusion "SDK1," "BRAT1," chr7~chr7 3861215 2583596 8 +- 1.906155 8 4 4 8 6 TCGA-DX-A23U-01A-11R-A26T-07 SNX27~CPT2 fusion "SNX27," "CPT2," chr1~chr1 151584988 53666391 10 ++ 1.834372 9 6 3 9 14 TCGA-DX-A23U-01A-11R-A26T-07 TJP1~Nchr10~38040648 intergenic "TJP1," "-," chr15~chr10 30026478 38040648 3 -+ 1.098612 3 2 1 3 6 TCGA-DX-A23U-01A-11R-A26T-07 TMEM59~Nchr1~190855102 intergenic "TMEM59," "-," chr1~chr1 54506429 190855102 7 -+ 1.747868 5 1 4 5 14 TCGA-DX-A23U-01A-11R-A26T-07 TMEM59~PIGC fusion "TMEM59," "PIGC," chr1~chr1 54506429 172369056 2 -- 0.693147 1 1 0 1 4 TCGA-DX-A23U-01A-11R-A26T-07 TNRC18~SELENBP1 fusion "TNRC18," "SELENBP1," chr7~chr1 5460691 151339380 3 -- 1.098612 3 1 2 3 2 TCGA-DX-A23U-01A-11R-A26T-07 TUBGCP5~ZCCHC11 fusion "TUBGCP5," "ZCCHC11," chr15~chr1 22870003 52902650 3 +- 1.098612 3 3 0 3 10 TCGA-DX-A23U-01A-11R-A26T-07 TUBGCP5~ZCCHC11 fusion "TUBGCP5," "ZCCHC11," chr15~chr1 22870003 52904007 2 +- 0.693147 2 2 0 2 20 TCGA-DX-A23U-01A-11R-A26T-07 TUFT1~PKN2 fusion "TUFT1," "PKN2," chr1~chr1 151512902 89206671 5 ++ 1.332179 5 3 2 5 22 TCGA-DX-A23U-01A-11R-A26T-07 TXNDC12~ZFYVE9 fusion "TXNDC12," "ZFYVE9," chr1~chr1 52507209 52625789 11 -+ 1.893788 11 7 4 11 24 TCGA-DX-A23U-01A-11R-A26T-07 ZFYVE9~ECHDC2 fusion "ZFYVE9," "ECHDC2," chr1~chr1 52769597 53364896 2 +- 0.693147 2 0 2 2 8 TCGA-DX-A23U-01A-11R-A26T-07 ZFYVE9~RP5-1116C7.1 fusion "ZFYVE9," "RP5-1116C7.1," chr1~chr1 52608075 172113577 19 +- 2.333197 18 5 13 18 38 TCGA-DX-A23U-01A-11R-A26T-07 ZNF687~Nchr1~194963365 intergenic "ZNF687," "-," chr1~chr1 151255794 194963365 2 ++ 0.693147 1 0 1 1 722 TCGA-DX-A23U-01A-11R-A26T-07 ZNF687~Nchr1~194963365 intergenic "ZNF687," "-," chr1~chr1 151254871 194963365 87 ++ 3.121999 86 9 77 86 2404 TCGA-DX-A23U-01A-11R-A26T-07 ZNF687~Nchr1~194963369 intergenic "ZNF687," "-," chr1~chr1 151254886 194963369 2 ++ 0.693147 2 1 1 2 2514 TCGA-DX-A23U-01A-11R-A26T-07 ZNF687~Nchr1~194963369 intergenic "ZNF687," "-," chr1~chr1 151255794 194963369 17 ++ 2.751667 17 7 10 17 772 TCGA-DX-A23U-01A-11R-A26T-07 ZNF687~Nchr1~194963369 intergenic "ZNF687," "-," chr1~chr1 151254871 194963369 45 ++ 2.920824 44 8 36 44 2376 TCGA-DX-A23U-01A-11R-A26T-07 ZNF687~Nchr1~194963402 intergenic "ZNF687," "-," chr1~chr1 151255794 194963402 20 ++ 2.761626 18 8 10 18 1368 TCGA-DX-A23U-01A-11R-A26T-07 ZNF687~Nchr1~194963402 intergenic "ZNF687," "-," chr1~chr1 151254871 194963402 389 ++ 3.279233 366 78 288 366 2216 TCGA-DX-A23U-01A-11R-A26T-07 ZNF687~Nchr1~194963412 intergenic "ZNF687," "-," chr1~chr1 151255794 194963412 15 ++ 2.338372 14 7 7 14 1370 TCGA-DX-A23U-01A-11R-A26T-07 ZNF687~Nchr1~194963412 intergenic "ZNF687," "-," chr1~chr1 151254871 194963412 20 ++ 2.622996 19 8 11 19 2118 TCGA-DX-A23U-01A-11R-A26T-07 ZNF687~Nchr1~194965286 intergenic "ZNF687," "-," chr1~chr1 151254871 194965286 24 ++ 2.809678 21 3 18 21 492 TCGA-DX-A23U-01A-11R-A26T-07 ZNF687~Nchr1~194965286 intergenic "ZNF687," "-," chr1~chr1 151255794 194965286 3 ++ 1.098612 3 3 0 3 278 TCGA-DX-A1KX-01A-22R-A24X-07 AC003090.1~DFNA5 fusion "AC003090.1," "DFNA5," chr7~chr7 25701290 24756993 4 -- 1.386294 4 4 0 4 4 TCGA-DX-A1KX-01A-22R-A24X-07 AC011497.1~Nchr19~43155239 intergenic "AC011497.1," "-," chr19~chr19 42929356 43155239 7 ++ 1.94591 7 5 2 7 12 TCGA-DX-A1KX-01A-22R-A24X-07 AC093726.6~Nchr9~1334574 intergenic "AC093726.6," "-," chr7~chr9 154720734 1334574 3 +- 0.636514 3 1 2 3 6 TCGA-DX-A1KX-01A-22R-A24X-07 ADNP2~Nchr18~76476534 intergenic "ADNP2," "-," chr18~chr18 77875533 76476534 21 ++ 2.582424 20 11 9 20 44 TCGA-DX-A1KX-01A-22R-A24X-07 ADNP2~Nchr18~76479925 intergenic "ADNP2," "-," chr18~chr18 77875533 76479925 4 ++ 1.039721 4 2 2 4 20 TCGA-DX-A1KX-01A-22R-A24X-07 AKT2~MAP3K7 fusion "AKT2," "MAP3K7," chr19~chr6 40743876 91278342 2 -- 0.693147 2 1 1 2 2 TCGA-DX-A1KX-01A-22R-A24X-07 ARL15~PARP8 fusion "ARL15," "PARP8," chr5~chr5 53606262 50045985 3 -+ 1.098612 3 2 1 3 30 TCGA-DX-A1KX-01A-22R-A24X-07 ARL8B~Nchr3~10670744 intergenic "ARL8B," "-," chr3~chr3 5164273 10670744 7 ++ 1.747868 7 5 2 7 16 TCGA-DX-A1KX-01A-22R-A24X-07 CHRDL1~Nchr7~54487144 intergenic "CHRDL1," "-," chrX~chr7 109963063 54487144 2 -+ 0.693147 2 2 0 2 2 TCGA-DX-A1KX-01A-22R-A24X-07 CHRDL1~SLC25A5 fusion "CHRDL1," "SLC25A5," chrX~chrX 109963063 118602486 27 -+ 2.653532 26 9 17 26 74 TCGA-DX-A1KX-01A-22R-A24X-07 CLIC2~MAMLD1 fusion "CLIC2," "MAMLD1," chrX~chrX 154563680 149638017 6 -+ 1.329661 5 2 3 5 12 TCGA-DX-A1KX-01A-22R-A24X-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272593 94054958 6 -+ 1.56071 6 4 2 6 4 TCGA-DX-A1KX-01A-22R-A24X-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268840 189862426 5 -+ 0.950271 4 3 1 4 4 TCGA-DX-A1KX-01A-22R-A24X-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94041994 48266371 4 +- 1.039721 2 0 2 2 2 TCGA-DX-A1KX-01A-22R-A24X-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94056607 48270054 4 +- 1.386294 2 2 0 2 2 TCGA-DX-A1KX-01A-22R-A24X-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94055161 189867034 5 ++ 0.950271 5 1 4 5 4 TCGA-DX-A1KX-01A-22R-A24X-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189864303 48265317 4 +- 1.039721 1 0 1 1 2 TCGA-DX-A1KX-01A-22R-A24X-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189869090 48267957 8 +- 1.073543 6 1 5 6 6 TCGA-DX-A1KX-01A-22R-A24X-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189871149 94034039 2 ++ 0.693147 1 0 1 1 8 TCGA-DX-A1KX-01A-22R-A24X-07 CREB3L2~Nchr12~23180484 intergenic "CREB3L2," "-," chr7~chr12 137686350 23180484 8 -- 1.906155 7 3 4 7 14 TCGA-DX-A1KX-01A-22R-A24X-07 DOCK8~Nchr9~22957372 intergenic "DOCK8," "-," chr9~chr9 399259 22957372 9 ++ 1.889159 7 2 5 7 28 TCGA-DX-A1KX-01A-22R-A24X-07 EXD1~Nchr15~35296432 intergenic "EXD1," "-," chr15~chr15 41501699 35296432 4 -- 1.386294 2 2 0 2 8 TCGA-DX-A1KX-01A-22R-A24X-07 FAM180A~AHCYL2 fusion "FAM180A," "AHCYL2," chr7~chr7 135421847 128864930 2 -+ 0.693147 2 0 2 2 2 TCGA-DX-A1KX-01A-22R-A24X-07 FAM180A~AHCYL2 fusion "FAM180A," "AHCYL2," chr7~chr7 135421847 129019479 7 -+ 1.747868 7 1 6 7 32 TCGA-DX-A1KX-01A-22R-A24X-07 FAM180A~AHCYL2 fusion "FAM180A," "AHCYL2," chr7~chr7 135421847 129019482 6 -+ 1.791759 6 3 3 6 32 TCGA-DX-A1KX-01A-22R-A24X-07 FSD1L~Nchr18~10338945 intergenic "FSD1L," "-," chr9~chr18 108230605 10338945 25 +- 2.622498 25 12 13 25 50 TCGA-DX-A1KX-01A-22R-A24X-07 GLTSCR2~Nchr15~95399083 intergenic "GLTSCR2," "-," chr19~chr15 48253526 95399083 3 ++ 0.636514 3 2 1 3 8 TCGA-DX-A1KX-01A-22R-A24X-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 435 -- 2.349242 435 434 1 435 70 TCGA-DX-A1KX-01A-22R-A24X-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238905 31324034 4 -- 1.039721 1 1 0 1 26 TCGA-DX-A1KX-01A-22R-A24X-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 49 -- 2.185516 49 1 48 49 36 TCGA-DX-A1KX-01A-22R-A24X-07 HNF4A~MYBL2 fusion "HNF4A," "MYBL2," chr20~chr20 43036115 42338603 2 ++ 0.693147 1 0 1 1 18 TCGA-DX-A1KX-01A-22R-A24X-07 HNF4A~MYBL2 fusion "HNF4A," "MYBL2," chr20~chr20 43036115 42340128 4 ++ 1.386294 4 2 2 4 12 TCGA-DX-A1KX-01A-22R-A24X-07 HPRT1~Nchr9~112366498 intergenic "HPRT1," "-," chrX~chr9 133594368 112366498 2 +- 0.693147 2 1 1 2 12 TCGA-DX-A1KX-01A-22R-A24X-07 NDUFB6~NchrX~147649659 intergenic "NDUFB6," "-," chr9~chrX 32570958 147649659 5 -- 1.332179 5 2 3 5 12 TCGA-DX-A1KX-01A-22R-A24X-07 NRIP1~AF127936.7 fusion "NRIP1," "AF127936.7," chr21~chr21 16437066 16230029 3 -- 1.098612 3 3 0 3 2 TCGA-DX-A1KX-01A-22R-A24X-07 NUP98~Nchr9~37394791 intergenic "NUP98," "-," chr11~chr9 3756421 37394791 2 -- 0.693147 1 1 0 1 8 TCGA-DX-A1KX-01A-22R-A24X-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 33 -+ 2.255279 15 0 15 15 22 TCGA-DX-A1KX-01A-22R-A24X-07 Nchr12~104659073~Nchr12~104659181 intergenic "-," "-," chr12~chr12 104659073 104659181 3 -- 1.098612 3 1 2 3 28 TCGA-DX-A1KX-01A-22R-A24X-07 Nchr15~36507893~SNX18 intergenic "-," "SNX18," chr15~chr5 36507893 53839009 11 -+ 2.098274 5 1 4 5 6 TCGA-DX-A1KX-01A-22R-A24X-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 4 ++ 1.386294 4 1 3 4 8 TCGA-DX-A1KX-01A-22R-A24X-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 6 ++ 1.791759 6 3 3 6 4 TCGA-DX-A1KX-01A-22R-A24X-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 3 -- 1.098612 3 1 2 3 2 TCGA-DX-A1KX-01A-22R-A24X-07 Nchr18~69611715~Nchr21~15164933 intergenic "-," "-," chr18~chr21 69611715 15164933 7 -+ 1.747868 7 0 7 7 22 TCGA-DX-A1KX-01A-22R-A24X-07 Nchr19~22697166~ACTR5 intergenic "-," "ACTR5," chr19~chr20 22697166 37400202 11 -+ 1.972247 11 6 5 11 24 TCGA-DX-A1KX-01A-22R-A24X-07 Nchr19~22715141~ACTR5 intergenic "-," "ACTR5," chr19~chr20 22715141 37400202 2 -+ 0.693147 2 1 1 2 18 TCGA-DX-A1KX-01A-22R-A24X-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 19 ++ 2.506662 10 10 0 10 8 TCGA-DX-A1KX-01A-22R-A24X-07 Nchr21~17859858~Nchr5~162180832 intergenic "-," "-," chr21~chr5 17859858 162180832 154 ++ 3.064013 72 6 66 72 30 TCGA-DX-A1KX-01A-22R-A24X-07 Nchr5~163284320~Nchr5~163680445 intergenic "-," "-," chr5~chr5 163284320 163680445 5 ++ 1.609438 5 2 3 5 14 TCGA-DX-A1KX-01A-22R-A24X-07 Nchr7~130792479~INPP4B intergenic "-," "INPP4B," chr7~chr4 130792479 142960857 13 -+ 1.991509 12 10 2 12 28 TCGA-DX-A1KX-01A-22R-A24X-07 Nchr7~130792479~INPP4B intergenic "-," "INPP4B," chr7~chr4 130792479 142976492 2 -+ 0.693147 2 1 1 2 2 TCGA-DX-A1KX-01A-22R-A24X-07 Nchr9~15364663~DOCK8 intergenic "-," "DOCK8," chr9~chr9 15364663 396785 6 -+ 1.329661 6 1 5 6 36 TCGA-DX-A1KX-01A-22R-A24X-07 Nchr9~17906920~Nchr9~18163860 intergenic "-," "-," chr9~chr9 17906920 18163860 8 ++ 1.386294 4 2 2 4 22 TCGA-DX-A1KX-01A-22R-A24X-07 PARP8~Nchr5~53729941 intergenic "PARP8," "-," chr5~chr5 49963959 53729941 5 +- 1.332179 5 2 3 5 14 TCGA-DX-A1KX-01A-22R-A24X-07 PDLIM5~Nchr4~100304777 intergenic "PDLIM5," "-," chr4~chr4 95497185 100304777 6 +- 1.56071 6 4 2 6 14 TCGA-DX-A1KX-01A-22R-A24X-07 PFKFB3~PALM2-AKAP2 fusion "PFKFB3," "PALM2,PALM2,PALM2-AKAP2,PALM2,PALM2-AKAP2,PALM2-AKAP2," chr10~chr9 6268328 112629771 3 ++ 1.098612 3 2 1 3 6 TCGA-DX-A1KX-01A-22R-A24X-07 PTPRD~MTERFD2 fusion "PTPRD," "MTERFD2," chr9~chr2 8633317 242015097 3 -- 1.098612 3 0 3 3 8 TCGA-DX-A1KX-01A-22R-A24X-07 RP11-328J2.1~Nchr7~119140163 intergenic "RP11-328J2.1," "-," chr7~chr7 119353720 119140163 7 -- 1.475076 6 4 2 6 30 TCGA-DX-A1KX-01A-22R-A24X-07 RSU1~Nchr10~3000555 intergenic "RSU1," "-," chr10~chr10 16794538 3000555 4 -+ 1.386294 4 1 3 4 16 TCGA-DX-A1KX-01A-22R-A24X-07 SLC6A8~Nchr6~105877728 intergenic "SLC6A8," "-," chrX~chr6 152955961 105877728 7 +- 1.549826 7 6 1 7 8 TCGA-DX-A1KX-01A-22R-A24X-07 SLC6A8~Nchr6~105907783 intergenic "SLC6A8," "-," chrX~chr6 152955961 105907783 8 +- 1.906155 6 4 2 6 22 TCGA-DX-A1KX-01A-22R-A24X-07 SLC6A8~Nchr6~105975173 intergenic "SLC6A8," "-," chrX~chr6 152955961 105975173 5 +- 1.332179 5 2 3 5 8 TCGA-DX-A1KX-01A-22R-A24X-07 SRPK2~Nchr7~88216554 intergenic "SRPK2," "-," chr7~chr7 104800954 88216554 36 -- 2.630253 35 7 28 35 84 TCGA-DX-A1KX-01A-22R-A24X-07 STAU1~Nchr20~52312916 intergenic "STAU1," "-," chr20~chr20 47768119 52312916 58 -- 2.822534 53 38 15 53 76 TCGA-DX-A1KX-01A-22R-A24X-07 STEAP4~PON1 fusion "STEAP4," "PON1," chr7~chr7 87936107 94946101 2 -- 0.693147 2 1 1 2 18 TCGA-DX-A1KX-01A-22R-A24X-07 STEAP4~PON1 fusion "STEAP4," "PON1," chr7~chr7 87936107 94954018 7 -- 1.747868 7 4 3 7 48 TCGA-DX-A1KX-01A-22R-A24X-07 STEAP4~PON1 fusion "STEAP4," "PON1," chr7~chr7 87920231 94954018 3 -- 1.098612 2 1 1 2 44 TCGA-DX-A1KX-01A-22R-A24X-07 TAF4B~Nchr21~26086389 intergenic "TAF4B," "-," chr18~chr21 23807240 26086389 6 +- 1.56071 6 1 5 6 16 TCGA-DX-A1KX-01A-22R-A24X-07 TAOK3~NchrX~80747826 intergenic "TAOK3," "-," chr12~chrX 118650719 80747826 23 -- 2.306437 22 14 8 22 22 TCGA-DX-A1KX-01A-22R-A24X-07 TXNL4A~Nchr18~69611838 intergenic "TXNL4A," "-," chr18~chr18 77737598 69611838 9 -- 1.889159 8 3 5 8 12 TCGA-DX-A1KX-01A-22R-A24X-07 UPK2~DGKI fusion "UPK2,BCL9L," "DGKI," chr11~chr7 118795947 137363398 15 -- 2.615631 13 6 7 13 34 TCGA-DX-A1KX-01A-22R-A24X-07 UPK2~DGKI fusion "UPK2,BCL9L," "DGKI," chr11~chr7 118795947 137374748 24 -- 2.658193 22 10 12 22 68 TCGA-DX-A1KX-01A-22R-A24X-07 UPK2~DGKI fusion "UPK2,BCL9L," "DGKI," chr11~chr7 118795947 137447601 4 -- 1.386294 4 2 2 4 8 TCGA-DX-A1KX-01A-22R-A24X-07 USP34~Nchr2~21489988 intergenic "USP34," "-," chr2~chr2 61505300 21489988 4 -- 1.039721 4 3 1 4 2 TCGA-DX-A1KX-01A-22R-A24X-07 YAP1~REG4 fusion "YAP1," "REG4," chr11~chr1 101985125 120341225 5 +- 1.609438 4 1 3 4 12 TCGA-DX-A1KX-01A-22R-A24X-07 ZMYND11~NchrX~82296837 intergenic "ZMYND11," "-," chr10~chrX 267296 82296837 2 ++ 0.693147 1 0 1 1 14 TCGA-FX-A3NK-01A-11R-A21T-07 ABHD2~Nchr12~72128388 intergenic "ABHD2," "-," chr15~chr12 89734380 72128388 8 ++ 1.906155 8 3 5 8 10 TCGA-FX-A3NK-01A-11R-A21T-07 ABHD2~Nchr12~72131824 intergenic "ABHD2," "-," chr15~chr12 89734380 72131824 3 ++ 1.098612 3 3 0 3 2 TCGA-FX-A3NK-01A-11R-A21T-07 ATP6V1C1~Nchr12~87855721 intergenic "ATP6V1C1," "-," chr8~chr12 104078675 87855721 14 ++ 2.304619 13 7 6 13 44 TCGA-FX-A3NK-01A-11R-A21T-07 ATP6V1C1~Nchr12~87860577 intergenic "ATP6V1C1," "-," chr8~chr12 104078675 87860577 24 ++ 2.556827 21 10 11 21 52 TCGA-FX-A3NK-01A-11R-A21T-07 ATP6V1C1~Nchr12~87895796 intergenic "ATP6V1C1," "-," chr8~chr12 104078675 87895796 3 ++ 1.098612 3 2 1 3 4 TCGA-FX-A3NK-01A-11R-A21T-07 ATP8B4~LINGO1 fusion "ATP8B4," "LINGO1," chr15~chr15 50330965 77908242 10 -- 2.025326 10 4 6 10 18 TCGA-FX-A3NK-01A-11R-A21T-07 ATRN~C20orf194 fusion "ATRN," "C20orf194," chr20~chr20 3452164 3363153 5 +- 1.609438 4 2 2 4 16 TCGA-FX-A3NK-01A-11R-A21T-07 ATRX~NchrX~76227805 intergenic "ATRX," "-," chrX~chrX 76972608 76227805 8 -- 2.079442 5 3 2 5 10 TCGA-FX-A3NK-01A-11R-A21T-07 ATRX~NchrX~76244129 intergenic "ATRX," "-," chrX~chrX 76972608 76244129 4 -- 1.386294 1 1 0 1 4 TCGA-FX-A3NK-01A-11R-A21T-07 BEST3~Nchr12~80157881 intergenic "BEST3," "-," chr12~chr12 70037469 80157881 6 -- 1.56071 5 2 3 5 2 TCGA-FX-A3NK-01A-11R-A21T-07 BEST3~Nchr12~82467506 intergenic "BEST3," "-," chr12~chr12 70039257 82467506 3 +- 1.098612 3 1 2 3 2 TCGA-FX-A3NK-01A-11R-A21T-07 BEST3~Nchr12~82467506 intergenic "BEST3," "-," chr12~chr12 70049192 82467506 38 +- 2.766146 33 16 17 33 112 TCGA-FX-A3NK-01A-11R-A21T-07 C12orf26~RP11-620J15.3 fusion "C12orf26," "RP11-620J15.3," chr12~chr12 82796909 58329336 5 +- 1.609438 5 1 4 5 10 TCGA-FX-A3NK-01A-11R-A21T-07 C12orf28~Nchr12~58632111 intergenic "C12orf28," "-," chr12~chr12 70304710 58632111 5 ++ 1.332179 5 2 3 5 56 TCGA-FX-A3NK-01A-11R-A21T-07 C12orf28~Nchr12~58635957 intergenic "C12orf28," "-," chr12~chr12 70304710 58635957 20 ++ 2.345737 19 9 10 19 46 TCGA-FX-A3NK-01A-11R-A21T-07 C12orf28~Nchr12~61266464 intergenic "C12orf28," "-," chr12~chr12 70304710 61266464 6 +- 1.56071 6 0 6 6 12 TCGA-FX-A3NK-01A-11R-A21T-07 C12orf28~Nchr12~61266560 intergenic "C12orf28," "-," chr12~chr12 70304710 61266560 4 +- 1.039721 4 1 3 4 16 TCGA-FX-A3NK-01A-11R-A21T-07 C12orf28~Nchr12~71847983 intergenic "C12orf28," "-," chr12~chr12 70304710 71847983 7 +- 1.549826 7 6 1 7 8 TCGA-FX-A3NK-01A-11R-A21T-07 CACNA1A~RP11-461F16.3 fusion "CACNA1A," "RP11-461F16.3," chr19~chr12 13335481 77273668 4 -+ 1.039721 4 2 2 4 4 TCGA-FX-A3NK-01A-11R-A21T-07 CCNC~Nchr6~148371181 intergenic "CCNC," "-," chr6~chr6 99992988 148371181 14 -+ 2.069202 11 4 7 11 16 TCGA-FX-A3NK-01A-11R-A21T-07 CCT2~Nchr15~70855298 intergenic "CCT2," "-," chr12~chr15 69994335 70855298 3 ++ 0.636514 3 3 0 3 2 TCGA-FX-A3NK-01A-11R-A21T-07 CCT2~Nchr15~70855602 intergenic "CCT2," "-," chr12~chr15 69993784 70855602 20 ++ 2.25026 20 3 17 20 68 TCGA-FX-A3NK-01A-11R-A21T-07 CCT2~Nchr15~70855618 intergenic "CCT2," "-," chr12~chr15 69993784 70855618 15 ++ 2.395908 15 7 8 15 56 TCGA-FX-A3NK-01A-11R-A21T-07 CCT2~Nchr6~131065885 intergenic "CCT2," "-," chr12~chr6 69993784 131065885 28 ++ 2.601682 28 7 21 28 90 TCGA-FX-A3NK-01A-11R-A21T-07 CCT2~OSBPL8 fusion "CCT2," "OSBPL8," chr12~chr12 69993784 76881398 15 +- 2.523211 12 9 3 12 22 TCGA-FX-A3NK-01A-11R-A21T-07 CCT2~RP11-781A6.1 fusion "CCT2," "RP11-781A6.1," chr12~chr12 69993784 78177043 298 ++ 3.266753 287 175 112 287 820 TCGA-FX-A3NK-01A-11R-A21T-07 CD164~Nchr12~59212912 intergenic "CD164," "-," chr6~chr12 109697277 59212912 9 -+ 1.83102 9 5 4 9 24 TCGA-FX-A3NK-01A-11R-A21T-07 CD276~Nchr6~133205077 intergenic "CD276," "-," chr15~chr6 73976801 133205077 19 ++ 2.360736 15 1 14 15 34 TCGA-FX-A3NK-01A-11R-A21T-07 CD276~Nchr6~133240794 intergenic "CD276," "-," chr15~chr6 73976801 133240794 8 ++ 1.667462 8 0 8 8 12 TCGA-FX-A3NK-01A-11R-A21T-07 CD276~Nchr6~133257700 intergenic "CD276," "-," chr15~chr6 73976801 133257700 36 ++ 2.299829 33 3 30 33 44 TCGA-FX-A3NK-01A-11R-A21T-07 CDK19~HSPBAP1 fusion "CDK19," "HSPBAP1," chr6~chr3 111067329 122478207 5 -- 1.609438 3 3 0 3 4 TCGA-FX-A3NK-01A-11R-A21T-07 CDK19~Nchr12~79165713 intergenic "CDK19," "-," chr6~chr12 111136212 79165713 2 -- 0.693147 2 2 0 2 6 TCGA-FX-A3NK-01A-11R-A21T-07 CECR1~Nchr6~77746895 intergenic "CECR1," "-," chr22~chr6 17669229 77746895 4 -+ 1.039721 2 0 2 2 42 TCGA-FX-A3NK-01A-11R-A21T-07 CECR1~Nchr6~77746974 intergenic "CECR1," "-," chr22~chr6 17669229 77746974 6 -+ 1.791759 4 2 2 4 32 TCGA-FX-A3NK-01A-11R-A21T-07 CEP57L1~CPM fusion "CEP57L1," "CPM," chr6~chr12 109416778 69326620 67 +- 2.675997 44 42 2 44 96 TCGA-FX-A3NK-01A-11R-A21T-07 CEP57L1~CPM fusion "CEP57L1," "CPM," chr6~chr12 109416778 69329751 6 +- 1.791759 5 5 0 5 102 TCGA-FX-A3NK-01A-11R-A21T-07 CEP57L1~CPM fusion "CEP57L1," "CPM," chr6~chr12 109416778 69340434 4 +- 1.386294 2 2 0 2 96 TCGA-FX-A3NK-01A-11R-A21T-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48275310 94029544 2 -+ 0.693147 2 1 1 2 2 TCGA-FX-A3NK-01A-11R-A21T-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48270001 94043534 3 -+ 1.098612 1 0 1 1 12 TCGA-FX-A3NK-01A-11R-A21T-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264845 94050330 3 -+ 1.098612 2 1 1 2 6 TCGA-FX-A3NK-01A-11R-A21T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48267451 189859478 12 -+ 0.918428 11 10 1 11 10 TCGA-FX-A3NK-01A-11R-A21T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268845 189862999 6 -+ 1.242453 5 3 2 5 2 TCGA-FX-A3NK-01A-11R-A21T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268178 189870076 7 -+ 1.004242 6 6 0 6 2 TCGA-FX-A3NK-01A-11R-A21T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48269149 189871071 2 -+ 0.693147 1 1 0 1 6 TCGA-FX-A3NK-01A-11R-A21T-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049717 48269241 2 +- 0.693147 2 1 1 2 2 TCGA-FX-A3NK-01A-11R-A21T-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94049756 189864196 5 ++ 1.05492 3 0 3 3 36 TCGA-FX-A3NK-01A-11R-A21T-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189868190 48267469 3 +- 1.098612 3 1 2 3 20 TCGA-FX-A3NK-01A-11R-A21T-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189868190 94038912 14 ++ 1.494403 12 12 0 12 20 TCGA-FX-A3NK-01A-11R-A21T-07 CPM~BEST3 fusion "CPM," "BEST3," chr12~chr12 69326458 70037567 4 -- 1.039721 3 1 2 3 12 TCGA-FX-A3NK-01A-11R-A21T-07 CPM~BEST3 fusion "CPM," "BEST3," chr12~chr12 69326458 70049593 44 -- 2.829077 44 30 14 44 96 TCGA-FX-A3NK-01A-11R-A21T-07 CPM~C12orf28 fusion "CPM," "C12orf28," chr12~chr12 69326458 70345893 367 -+ 2.96564 344 175 167 344 1202 TCGA-FX-A3NK-01A-11R-A21T-07 CPM~C12orf28 fusion "CPM," "C12orf28," chr12~chr12 69326458 70345896 6 -+ 1.791759 5 4 1 5 1296 TCGA-FX-A3NK-01A-11R-A21T-07 CPM~C12orf28 fusion "CPM," "C12orf28," chr12~chr12 69326458 70346579 3 -+ 1.098612 2 1 1 2 492 TCGA-FX-A3NK-01A-11R-A21T-07 CPM~C12orf28 fusion "CPM," "C12orf28," chr12~chr12 69326458 70349143 3 -+ 1.098612 3 1 2 3 122 TCGA-FX-A3NK-01A-11R-A21T-07 CPM~C12orf28 fusion "CPM," "C12orf28," chr12~chr12 69326458 70351602 8 -+ 1.906155 7 5 2 7 32 TCGA-FX-A3NK-01A-11R-A21T-07 CPM~Nchr12~82458293 intergenic "CPM," "-," chr12~chr12 69326458 82458293 38 -+ 2.66865 33 22 11 33 94 TCGA-FX-A3NK-01A-11R-A21T-07 CPM~Nchr12~83020292 intergenic "CPM," "-," chr12~chr12 69326458 83020292 5 -+ 1.609438 5 2 3 5 14 TCGA-FX-A3NK-01A-11R-A21T-07 CPSF6~TMTC2 fusion "CPSF6," "TMTC2," chr12~chr12 69633486 83250789 44 ++ 2.877052 43 8 35 43 74 TCGA-FX-A3NK-01A-11R-A21T-07 CPSF6~TMTC2 fusion "CPSF6," "TMTC2," chr12~chr12 69633486 83289597 15 ++ 1.968693 15 1 14 15 34 TCGA-FX-A3NK-01A-11R-A21T-07 CSRP2~Nchr12~73733556 intergenic "CSRP2," "-," chr12~chr12 77272718 73733556 4 -+ 1.386294 3 3 0 3 22 TCGA-FX-A3NK-01A-11R-A21T-07 CSRP2~Nchr12~73756853 intergenic "CSRP2," "-," chr12~chr12 77272718 73756853 3 -+ 1.098612 3 3 0 3 8 TCGA-FX-A3NK-01A-11R-A21T-07 CTD-2337A12.1~CAST fusion "CTD-2337A12.1," "CAST," chr5~chr5 95715356 96011243 4 ++ 1.386294 1 1 0 1 8 TCGA-FX-A3NK-01A-11R-A21T-07 CTDSP2~Nchr12~72123841 intergenic "CTDSP2," "-," chr12~chr12 58223231 72123841 3 -- 1.098612 2 1 1 2 6 TCGA-FX-A3NK-01A-11R-A21T-07 CTDSP2~Nchr12~72130272 intergenic "CTDSP2," "-," chr12~chr12 58223231 72130272 9 -+ 2.043192 9 4 5 9 24 TCGA-FX-A3NK-01A-11R-A21T-07 CTDSP2~Nchr12~72131824 intergenic "CTDSP2," "-," chr12~chr12 58223231 72131824 6 -+ 1.791759 6 4 2 6 16 TCGA-FX-A3NK-01A-11R-A21T-07 CTDSP2~Nchr12~80946042 intergenic "CTDSP2," "-," chr12~chr12 58223231 80946042 15 -- 2.303488 14 6 8 14 64 TCGA-FX-A3NK-01A-11R-A21T-07 CTDSP2~Nchr12~80974188 intergenic "CTDSP2," "-," chr12~chr12 58223231 80974188 142 -- 3.064425 134 61 73 134 280 TCGA-FX-A3NK-01A-11R-A21T-07 CTDSP2~Nchr12~80980792 intergenic "CTDSP2," "-," chr12~chr12 58223231 80980792 8 -- 1.581094 9 4 4 9 14 TCGA-FX-A3NK-01A-11R-A21T-07 CTDSP2~Nchr12~82246382 intergenic "CTDSP2," "-," chr12~chr12 58223231 82246382 4 -- 1.039721 4 2 2 4 22 TCGA-FX-A3NK-01A-11R-A21T-07 CTDSP2~Nchr12~82255445 intergenic "CTDSP2," "-," chr12~chr12 58223231 82255445 7 -- 1.747868 7 4 3 7 24 TCGA-FX-A3NK-01A-11R-A21T-07 CTDSP2~Nchr12~89408645 intergenic "CTDSP2," "-," chr12~chr12 58221335 89408645 11 -- 2.019815 10 7 3 10 16 TCGA-FX-A3NK-01A-11R-A21T-07 CTDSP2~Nchr12~89416693 intergenic "CTDSP2," "-," chr12~chr12 58221335 89416693 31 -- 2.478583 30 23 7 30 40 TCGA-FX-A3NK-01A-11R-A21T-07 CTDSP2~Nchr12~89445044 intergenic "CTDSP2," "-," chr12~chr12 58221335 89445044 11 -- 2.271869 11 3 8 11 106 TCGA-FX-A3NK-01A-11R-A21T-07 CTDSP2~Nchr12~89475178 intergenic "CTDSP2," "-," chr12~chr12 58221335 89475178 3 -- 1.098612 3 1 2 3 2 TCGA-FX-A3NK-01A-11R-A21T-07 CTDSP2~Nchr12~89489361 intergenic "CTDSP2," "-," chr12~chr12 58221335 89489361 6 -- 1.791759 6 6 0 6 80 TCGA-FX-A3NK-01A-11R-A21T-07 CTDSP2~Nchr12~89516852 intergenic "CTDSP2," "-," chr12~chr12 58221335 89516852 58 -- 2.818869 55 32 23 55 94 TCGA-FX-A3NK-01A-11R-A21T-07 CTDSP2~RP11-272K23.3 fusion "CTDSP2," "RP11-272K23.3," chr12~chr12 58223231 80978022 5 -- 1.332179 5 3 2 5 8 TCGA-FX-A3NK-01A-11R-A21T-07 CTDSP2~TMEM200A fusion "CTDSP2," "TMEM200A," chr12~chr6 58220129 130760493 3 -+ 1.098612 3 1 2 3 18 TCGA-FX-A3NK-01A-11R-A21T-07 CTDSP2~TMEM200A fusion "CTDSP2," "TMEM200A," chr12~chr6 58217812 130760493 32 -+ 2.793826 31 11 20 31 142 TCGA-FX-A3NK-01A-11R-A21T-07 CTDSP2~TMEM200A fusion "CTDSP2," "TMEM200A," chr12~chr6 58220129 130761552 4 -+ 1.039721 3 1 2 3 14 TCGA-FX-A3NK-01A-11R-A21T-07 CTDSP2~TMEM200A fusion "CTDSP2," "TMEM200A," chr12~chr6 58217812 130761552 59 -+ 3.272437 59 22 37 59 124 TCGA-FX-A3NK-01A-11R-A21T-07 CTDSP2~ZDHHC17 fusion "CTDSP2," "ZDHHC17," chr12~chr12 58223231 77242013 143 -+ 3.121465 139 84 55 139 354 TCGA-FX-A3NK-01A-11R-A21T-07 DLGAP4~HM13 fusion "DLGAP4," "HM13," chr20~chr20 35129014 30102284 39 ++ 2.947938 37 14 23 37 98 TCGA-FX-A3NK-01A-11R-A21T-07 DNM2~Nchr12~72121942 intergenic "DNM2," "-," chr19~chr12 10923053 72121942 9 +- 2.043192 6 0 6 6 6 TCGA-FX-A3NK-01A-11R-A21T-07 DNM2~Nchr12~72123841 intergenic "DNM2," "-," chr19~chr12 10923053 72123841 9 +- 2.043192 8 3 5 8 10 TCGA-FX-A3NK-01A-11R-A21T-07 DNM2~PTH2R fusion "DNM2," "PTH2R," chr19~chr2 10829079 209292926 13 ++ 2.098147 13 7 6 13 12 TCGA-FX-A3NK-01A-11R-A21T-07 EFCAB11~Nchr14~90095480 intergenic "EFCAB11," "-," chr14~chr14 90397885 90095480 2 -- 0.693147 2 2 0 2 4 TCGA-FX-A3NK-01A-11R-A21T-07 EVI5L~Nchr12~74239811 intergenic "EVI5L," "-," chr19~chr12 7895267 74239811 6 ++ 1.56071 6 6 0 6 16 TCGA-FX-A3NK-01A-11R-A21T-07 FRS2~DNM2 fusion "FRS2," "DNM2," chr12~chr19 69864310 10904396 61 ++ 3.06041 58 44 14 58 296 TCGA-FX-A3NK-01A-11R-A21T-07 FRS2~Nchr12~77624807 intergenic "FRS2," "-," chr12~chr12 69864310 77624807 4 ++ 1.386294 2 2 0 2 8 TCGA-FX-A3NK-01A-11R-A21T-07 FRS2~PTPRQ fusion "FRS2," "PTPRQ," chr12~chr12 69864310 81072381 61 ++ 2.850304 58 26 32 58 396 TCGA-FX-A3NK-01A-11R-A21T-07 FRS2~PTPRQ fusion "FRS2," "PTPRQ," chr12~chr12 69864310 81072469 26 ++ 2.491505 21 12 9 21 214 TCGA-FX-A3NK-01A-11R-A21T-07 GADD45GIP1~Nchr12~79030442 intergenic "GADD45GIP1," "-," chr19~chr12 13067677 79030442 5 -+ 1.332179 5 2 3 5 14 TCGA-FX-A3NK-01A-11R-A21T-07 GSK3B~BEST3 fusion "GSK3B," "BEST3," chr3~chr12 119720893 70049593 2 -- 0.693147 1 1 0 1 8 TCGA-FX-A3NK-01A-11R-A21T-07 GSK3B~Nchr12~82393378 intergenic "GSK3B," "-," chr3~chr12 119720893 82393378 2 -+ 0.693147 2 0 2 2 4 TCGA-FX-A3NK-01A-11R-A21T-07 GSK3B~Nchr12~82398722 intergenic "GSK3B," "-," chr3~chr12 119720893 82398722 4 -+ 1.039721 4 1 3 4 6 TCGA-FX-A3NK-01A-11R-A21T-07 GSK3B~Nchr12~82458293 intergenic "GSK3B," "-," chr3~chr12 119720893 82458293 2 -+ 0.693147 2 1 1 2 4 TCGA-FX-A3NK-01A-11R-A21T-07 HIVEP2~RP5-899B16.1 fusion "HIVEP2," "RP5-899B16.1," chr6~chr6 143082601 140180422 10 -+ 1.643418 10 5 5 10 46 TCGA-FX-A3NK-01A-11R-A21T-07 HIVEP2~RP5-899B16.2 fusion "HIVEP2," "RP5-899B16.2,RP5-899B16.1," chr6~chr6 143082601 140177901 44 -+ 2.808803 44 15 29 44 98 TCGA-FX-A3NK-01A-11R-A21T-07 HN1~Nchr2~174296244 intergenic "HN1," "-," chr17~chr2 73143651 174296244 18 -- 1.002718 13 13 0 13 2 TCGA-FX-A3NK-01A-11R-A21T-07 IGHV3-15~IGHG1 fusion "IGHV3-15," "IGHG1," chr14~chr14 106610727 106209407 3 -- 1.098612 2 1 1 2 4 TCGA-FX-A3NK-01A-11R-A21T-07 IGHV3-23~IGHV3-49 fusion "IGHV3-23," "IGHV3-49," chr14~chr14 106725609 107013248 24 -- 2.141963 15 15 0 15 8 TCGA-FX-A3NK-01A-11R-A21T-07 IGHV3-74~IGHG3 fusion "IGHV3-74," "IGHG3," chr14~chr14 107219054 106237742 2 -- 0.693147 2 2 0 2 4 TCGA-FX-A3NK-01A-11R-A21T-07 INSR~NAV3 fusion "INSR," "NAV3," chr19~chr12 7267356 78559958 2 -+ 0.693147 2 0 2 2 2 TCGA-FX-A3NK-01A-11R-A21T-07 MDM2~C12orf28 fusion "MDM2," "AC025263.3,C12orf28," chr12~chr12 69218431 70249060 40 ++ 2.885443 39 25 14 39 60 TCGA-FX-A3NK-01A-11R-A21T-07 MDM2~Nchr12~77049526 intergenic "MDM2," "-," chr12~chr12 69218431 77049526 109 ++ 2.980884 105 81 24 105 222 TCGA-FX-A3NK-01A-11R-A21T-07 MDM2~Nchr12~77054078 intergenic "MDM2," "-," chr12~chr12 69218431 77054078 13 ++ 1.991509 13 7 6 13 10 TCGA-FX-A3NK-01A-11R-A21T-07 MDM2~Nchr12~83007985 intergenic "MDM2," "-," chr12~chr12 69203072 83007985 7 ++ 1.94591 7 2 5 7 30 TCGA-FX-A3NK-01A-11R-A21T-07 MDM2~Nchr12~83020292 intergenic "MDM2," "-," chr12~chr12 69203072 83020292 10 ++ 1.834372 8 6 2 8 28 TCGA-FX-A3NK-01A-11R-A21T-07 METTL21B~RP11-136F16.1 fusion "METTL21B," "RP11-136F16.1," chr12~chr12 58168550 78450124 2 +- 0.693147 2 1 1 2 50 TCGA-FX-A3NK-01A-11R-A21T-07 MMP2~COL3A1 fusion "MMP2," "COL3A1," chr16~chr2 55536778 189860446 3 ++ 1.098612 2 1 1 2 2 TCGA-FX-A3NK-01A-11R-A21T-07 MYH8~Nchr17~10511462 intergenic "MYH8," "-," chr17~chr17 10309555 10511462 3 ++ 1.098612 2 1 1 2 8 TCGA-FX-A3NK-01A-11R-A21T-07 MYH8~Nchr17~10511671 intergenic "MYH8," "-," chr17~chr17 10309555 10511671 4 ++ 1.386294 3 1 2 3 8 TCGA-FX-A3NK-01A-11R-A21T-07 NAV3~Nchr12~58366802 intergenic "NAV3," "-," chr12~chr12 78598918 58366802 6 ++ 1.329661 6 1 5 6 6 TCGA-FX-A3NK-01A-11R-A21T-07 NAV3~Nchr12~72131824 intergenic "NAV3," "-," chr12~chr12 78553066 72131824 4 ++ 1.039721 4 1 3 4 4 TCGA-FX-A3NK-01A-11R-A21T-07 NAV3~Nchr12~78661299 intergenic "NAV3," "-," chr12~chr12 78562646 78661299 23 +- 2.570281 23 14 9 23 110 TCGA-FX-A3NK-01A-11R-A21T-07 NAV3~OSBPL8 fusion "NAV3," "OSBPL8," chr12~chr12 78225484 76881398 3 +- 1.098612 2 1 1 2 4 TCGA-FX-A3NK-01A-11R-A21T-07 NOTCH3~CACNA1A fusion "NOTCH3," "CACNA1A," chr19~chr19 15308311 13482593 20 -- 2.579844 9 9 0 9 10 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 29 -+ 1.713945 12 0 12 12 58 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr12~61245435~PTPRR intergenic "-," "PTPRR," chr12~chr12 61245435 71158558 4 +- 1.386294 4 3 1 4 14 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr12~69409189~SYT1 intergenic "-," "SYT1," chr12~chr12 69409189 79349242 10 -+ 2.025326 10 4 6 10 78 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr12~70032794~Nchr12~82467506 intergenic "-," "-," chr12~chr12 70032794 82467506 5 +- 1.332179 2 2 0 2 6 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr12~73711509~Nchr12~80946042 intergenic "-," "-," chr12~chr12 73711509 80946042 3 -- 1.098612 3 2 1 3 6 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr12~74544782~Nchr12~87887915 intergenic "-," "-," chr12~chr12 74544782 87887915 5 -+ 1.609438 4 3 1 4 42 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr12~74544782~Nchr12~87887978 intergenic "-," "-," chr12~chr12 74544782 87887978 2 -+ 0.693147 2 1 1 2 26 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr12~74551570~Nchr12~87887915 intergenic "-," "-," chr12~chr12 74551570 87887915 6 -+ 0.867563 3 0 3 3 32 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr12~74551570~Nchr12~87887978 intergenic "-," "-," chr12~chr12 74551570 87887978 5 -+ 1.332179 4 0 4 4 20 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr12~77049072~MDM2 intergenic "-," "MDM2," chr12~chr12 77049072 69222551 10 ++ 2.302585 6 5 1 6 26 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr12~78445892~OSBPL8 intergenic "-," "OSBPL8," chr12~chr12 78445892 76881398 8 -- 1.732868 8 4 4 8 12 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr12~78634285~Nchr12~58212878 intergenic "-," "-," chr12~chr12 78634285 58212878 24 -+ 2.669467 20 10 10 20 34 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr12~78650912~Nchr12~88051959 intergenic "-," "-," chr12~chr12 78650912 88051959 8 -- 1.732868 8 2 6 8 40 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr12~82458494~BEST3 intergenic "-," "BEST3," chr12~chr12 82458494 70037567 2 +- 0.693147 2 0 2 2 8 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr12~82458494~BEST3 intergenic "-," "BEST3," chr12~chr12 82458494 70049593 37 +- 2.849783 36 18 18 36 68 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr12~82467371~BEST3 intergenic "-," "BEST3," chr12~chr12 82467371 70072673 9 -- 2.043192 8 5 3 8 6 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr12~83020448~Nchr12~77839934 intergenic "-," "-," chr12~chr12 83020448 77839934 20 +- 2.345737 17 7 10 17 48 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr12~83584910~Nchr12~59217482 intergenic "-," "-," chr12~chr12 83584910 59217482 3 +- 1.098612 2 1 1 2 8 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr12~87746099~PPFIA2 intergenic "-," "PPFIA2," chr12~chr12 87746099 82148002 10 -- 1.695743 9 2 7 9 14 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr12~89747697~Nchr12~59217482 intergenic "-," "-," chr12~chr12 89747697 59217482 3 +- 1.098612 3 1 2 3 16 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr14~28125649~Nchr14~27791347 intergenic "-," "-," chr14~chr14 28125649 27791347 5 -- 1.609438 5 1 4 5 2 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr14~58448631~SLC35F4 intergenic "-," "SLC35F4," chr14~chr14 58448631 58060842 7 -- 1.94591 7 6 1 7 20 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr15~34227039~TP53BP1 intergenic "-," "TP53BP1," chr15~chr15 34227039 43740284 2 -- 0.693147 2 0 2 2 10 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr15~77657505~SLC27A2 intergenic "-," "SLC27A2," chr15~chr15 77657505 50481609 4 -- 1.386294 3 3 0 3 2 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr16~79619777~Nchr16~79246798 intergenic "-," "-," chr16~chr16 79619777 79246798 3 -- 1.098612 3 2 1 3 20 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 8 ++ 1.732868 8 3 5 8 22 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 6 ++ 1.791759 6 3 3 6 8 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 17 -- 2.588573 13 5 8 13 22 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr19~13064954~Nchr12~79030442 intergenic "-," "-," chr19~chr12 13064954 79030442 3 -+ 1.098612 3 3 0 3 16 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr2~176459302~Nchr2~176697339 intergenic "-," "-," chr2~chr2 176459302 176697339 6 ++ 1.791759 6 3 3 6 22 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr2~177065915~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065915 177065788 2 ++ 0.693147 2 0 2 2 4 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr3~123752660~RP11-367G18.1 intergenic "-," "RP11-367G18.1," chr3~chr6 123752660 113948877 18 +- 2.333197 19 4 14 19 14 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr3~125634496~SESN1 intergenic "-," "SESN1," chr3~chr6 125634496 109309890 3 -- 1.098612 2 0 2 2 16 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr6~141219325~AIG1 intergenic "-," "AIG1," chr6~chr6 141219325 143605247 152 -+ 3.138326 134 74 60 134 432 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr6~141219325~AIG1 intergenic "-," "AIG1," chr6~chr6 141219325 143654419 9 -+ 1.676988 8 6 2 8 110 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr6~142221460~Nchr6~142011005 intergenic "-," "-," chr6~chr6 142221460 142011005 8 -- 1.906155 7 2 5 7 12 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr6~77187400~RP11-30C8.2 intergenic "-," "RP11-30C8.2," chr6~chr13 77187400 74120978 6 -- 1.791759 5 5 0 5 2 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr6~8558876~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8558876 8784424 4 ++ 1.386294 2 0 2 2 4 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr8~128691459~CSRP2 intergenic "-," "CSRP2," chr8~chr12 128691459 77260041 5 -- 1.609438 4 1 3 4 8 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr8~90769273~RGS22 intergenic "-," "RGS22," chr8~chr8 90769273 101059824 10 -- 2.163956 9 1 8 9 16 TCGA-FX-A3NK-01A-11R-A21T-07 Nchr8~90769273~RGS22 intergenic "-," "RGS22," chr8~chr8 90769273 101065204 7 -- 1.747868 6 2 4 6 46 TCGA-FX-A3NK-01A-11R-A21T-07 OCA2~Nchr20~31239783 intergenic "OCA2," "-," chr15~chr20 28116300 31239783 2 -- 0.693147 2 0 2 2 10 TCGA-FX-A3NK-01A-11R-A21T-07 OS9~ZNF560 fusion "OS9," "ZNF560," chr12~chr19 58089626 9608891 3 +- 1.098612 2 1 1 2 4 TCGA-FX-A3NK-01A-11R-A21T-07 OS9~ZNF560 fusion "OS9," "ZNF560," chr12~chr19 58090156 9608891 16 +- 2.479956 13 9 4 13 42 TCGA-FX-A3NK-01A-11R-A21T-07 OSBPL8~CSRP2 fusion "OSBPL8," "CSRP2," chr12~chr12 76844631 77260041 30 -- 2.736818 27 17 10 27 64 TCGA-FX-A3NK-01A-11R-A21T-07 OSBPL8~Nchr12~69409459 intergenic "OSBPL8," "-," chr12~chr12 76953177 69409459 5 -- 1.609438 5 2 3 5 12 TCGA-FX-A3NK-01A-11R-A21T-07 OSBPL8~Nchr12~69409459 intergenic "OSBPL8," "-," chr12~chr12 76844631 69409459 4 -- 1.386294 4 1 3 4 10 TCGA-FX-A3NK-01A-11R-A21T-07 OSBPL8~Nchr12~69418576 intergenic "OSBPL8," "-," chr12~chr12 76844631 69418576 6 -- 1.791759 6 3 3 6 24 TCGA-FX-A3NK-01A-11R-A21T-07 OSBPL8~Nchr12~87746323 intergenic "OSBPL8," "-," chr12~chr12 76844631 87746323 4 -- 1.386294 4 0 4 4 14 TCGA-FX-A3NK-01A-11R-A21T-07 OSBPL8~Nchr12~87762349 intergenic "OSBPL8," "-," chr12~chr12 76844631 87762349 4 -- 0.693147 4 2 2 4 8 TCGA-FX-A3NK-01A-11R-A21T-07 OSBPL8~Nchr12~87922484 intergenic "OSBPL8," "-," chr12~chr12 76844631 87922484 12 -- 1.791759 11 7 4 11 36 TCGA-FX-A3NK-01A-11R-A21T-07 OSBPL8~PTPRQ fusion "OSBPL8," "PTPRQ," chr12~chr12 76844631 80998838 20 -+ 2.622996 18 13 5 18 46 TCGA-FX-A3NK-01A-11R-A21T-07 OSBPL8~SYT1 fusion "OSBPL8," "SYT1," chr12~chr12 76953177 79371579 13 -+ 1.778233 11 5 6 11 16 TCGA-FX-A3NK-01A-11R-A21T-07 PALM~Nchr6~95933424 intergenic "PALM," "-," chr19~chr6 719657 95933424 14 +- 2.341994 9 8 1 9 32 TCGA-FX-A3NK-01A-11R-A21T-07 PHIP~Nchr6~77178445 intergenic "PHIP," "-," chr6~chr6 79752560 77178445 3 -- 1.098612 3 1 2 3 14 TCGA-FX-A3NK-01A-11R-A21T-07 PHIP~Nchr6~77187452 intergenic "PHIP," "-," chr6~chr6 79752560 77187452 12 -- 2.369382 12 3 9 12 40 TCGA-FX-A3NK-01A-11R-A21T-07 PHIP~RP11-30C8.2 fusion "PHIP," "RP11-30C8.2," chr6~chr13 79752560 74120978 4 -- 1.039721 4 0 4 4 12 TCGA-FX-A3NK-01A-11R-A21T-07 PLAGL1~Nchr6~124327371 intergenic "PLAGL1," "-," chr6~chr6 144329227 124327371 245 -- 3.281064 221 203 18 221 332 TCGA-FX-A3NK-01A-11R-A21T-07 PLAGL1~Nchr6~124327371 intergenic "PLAGL1," "-," chr6~chr6 144328369 124327371 6 -- 1.242453 6 6 0 6 8 TCGA-FX-A3NK-01A-11R-A21T-07 PLAGL1~Nchr6~124329392 intergenic "PLAGL1," "-," chr6~chr6 144329227 124329392 6 -- 1.791759 6 5 1 6 336 TCGA-FX-A3NK-01A-11R-A21T-07 PPFIA2~Nchr12~82537526 intergenic "PPFIA2," "-," chr12~chr12 82147752 82537526 28 -- 2.613818 28 12 16 28 80 TCGA-FX-A3NK-01A-11R-A21T-07 PPFIA2~Nchr12~82575826 intergenic "PPFIA2," "-," chr12~chr12 82147752 82575826 15 -- 2.153532 12 5 7 12 100 TCGA-FX-A3NK-01A-11R-A21T-07 PPFIA2~TRHDE fusion "PPFIA2," "TRHDE," chr12~chr12 82147752 72771775 21 -+ 1.922284 16 4 12 16 36 TCGA-FX-A3NK-01A-11R-A21T-07 PPP1R12A~Nchr12~69198886 intergenic "PPP1R12A," "-," chr12~chr12 80328475 69198886 2 -- 0.693147 2 0 2 2 8 TCGA-FX-A3NK-01A-11R-A21T-07 PPP1R12A~Nchr12~69199091 intergenic "PPP1R12A," "-," chr12~chr12 80328475 69199091 38 -- 2.837287 38 26 12 38 78 TCGA-FX-A3NK-01A-11R-A21T-07 PTPRQ~RP11-288D9.1 fusion "PTPRQ," "RP11-288D9.1," chr12~chr12 80839497 80852602 6 +- 1.56071 6 3 3 6 22 TCGA-FX-A3NK-01A-11R-A21T-07 PTPRQ~RP11-390N6.1 fusion "PTPRQ," "RP11-390N6.1," chr12~chr12 81072553 79354494 7 +- 1.94591 3 2 1 3 2 TCGA-FX-A3NK-01A-11R-A21T-07 PTPRS~ANGPTL4 fusion "PTPRS," "ANGPTL4," chr19~chr19 5286061 8429090 180 -+ 3.184494 169 45 123 169 518 TCGA-FX-A3NK-01A-11R-A21T-07 PTPRS~ANGPTL4 fusion "PTPRS," "ANGPTL4," chr19~chr19 5286061 8430838 31 -+ 2.712563 27 17 10 27 64 TCGA-FX-A3NK-01A-11R-A21T-07 PTPRS~Nchr19~8418890 intergenic "PTPRS," "-," chr19~chr19 5286061 8418890 14 -+ 2.304619 14 5 9 14 630 TCGA-FX-A3NK-01A-11R-A21T-07 PTPRS~Nchr19~8420987 intergenic "PTPRS," "-," chr19~chr19 5286061 8420987 7 -+ 1.94591 6 3 3 6 166 TCGA-FX-A3NK-01A-11R-A21T-07 PTPRS~Nchr19~8428083 intergenic "PTPRS," "-," chr19~chr19 5286061 8428083 2 -+ 0.693147 2 0 2 2 288 TCGA-FX-A3NK-01A-11R-A21T-07 PTPRS~Nchr19~8428105 intergenic "PTPRS," "-," chr19~chr19 5286061 8428105 53 -+ 3.023891 46 33 13 46 602 TCGA-FX-A3NK-01A-11R-A21T-07 PTPRS~Nchr19~8428141 intergenic "PTPRS," "-," chr19~chr19 5286061 8428141 8 -+ 1.732868 7 6 1 7 550 TCGA-FX-A3NK-01A-11R-A21T-07 RAB3IP~Nchr12~79030442 intergenic "RAB3IP," "-," chr12~chr12 70178595 79030442 10 ++ 2.025326 9 3 6 9 30 TCGA-FX-A3NK-01A-11R-A21T-07 RAB3IP~Nchr12~79030442 intergenic "RAB3IP," "-," chr12~chr12 70150443 79030442 2 ++ 0.693147 2 2 0 2 10 TCGA-FX-A3NK-01A-11R-A21T-07 RAB3IP~Nchr12~79165713 intergenic "RAB3IP," "-," chr12~chr12 70178595 79165713 6 +- 1.56071 6 5 1 6 14 TCGA-FX-A3NK-01A-11R-A21T-07 RAB3IP~Nchr12~79223710 intergenic "RAB3IP," "-," chr12~chr12 70150443 79223710 3 +- 1.098612 3 2 1 3 2 TCGA-FX-A3NK-01A-11R-A21T-07 RAB3IP~Nchr12~79255968 intergenic "RAB3IP," "-," chr12~chr12 70178595 79255968 29 +- 2.739528 28 14 14 28 68 TCGA-FX-A3NK-01A-11R-A21T-07 RAB3IP~Nchr12~79256670 intergenic "RAB3IP," "-," chr12~chr12 70178595 79256670 3 +- 1.098612 3 2 1 3 6 TCGA-FX-A3NK-01A-11R-A21T-07 RBM39~OCA2 fusion "RBM39," "OCA2," chr20~chr15 34328746 28171400 10 -- 2.163956 8 2 6 8 6 TCGA-FX-A3NK-01A-11R-A21T-07 RP1-34H18.1~CSRP2 fusion "RP1-34H18.1," "CSRP2," chr12~chr12 77718994 77260041 6 +- 1.56071 6 3 3 6 32 TCGA-FX-A3NK-01A-11R-A21T-07 RP1-34H18.1~NAV3 fusion "RP1-34H18.1," "NAV3," chr12~chr12 77718994 78400199 83 ++ 2.895866 81 22 59 81 178 TCGA-FX-A3NK-01A-11R-A21T-07 RP1-34H18.1~Nchr12~61233393 intergenic "RP1-34H18.1," "-," chr12~chr12 77718994 61233393 5 +- 1.609438 3 2 1 3 2 TCGA-FX-A3NK-01A-11R-A21T-07 RP1-34H18.1~Nchr12~61266464 intergenic "RP1-34H18.1," "-," chr12~chr12 77718994 61266464 7 +- 1.277034 6 4 2 6 32 TCGA-FX-A3NK-01A-11R-A21T-07 RP1-34H18.1~Nchr12~61266560 intergenic "RP1-34H18.1," "-," chr12~chr12 77718994 61266560 4 +- 1.386294 4 3 1 4 32 TCGA-FX-A3NK-01A-11R-A21T-07 RP1-34H18.1~Nchr12~69409459 intergenic "RP1-34H18.1," "-," chr12~chr12 77718994 69409459 3 +- 1.098612 3 3 0 3 8 TCGA-FX-A3NK-01A-11R-A21T-07 RP1-34H18.1~Nchr12~69418576 intergenic "RP1-34H18.1," "-," chr12~chr12 77718994 69418576 4 +- 1.386294 4 3 1 4 20 TCGA-FX-A3NK-01A-11R-A21T-07 RP1-34H18.1~Nchr12~69800940 intergenic "RP1-34H18.1," "-," chr12~chr12 77718994 69800940 28 ++ 2.66988 24 17 7 24 84 TCGA-FX-A3NK-01A-11R-A21T-07 RP1-34H18.1~Nchr12~69817781 intergenic "RP1-34H18.1," "-," chr12~chr12 77718994 69817781 2 ++ 0.693147 2 1 1 2 22 TCGA-FX-A3NK-01A-11R-A21T-07 RP1-34H18.1~Nchr12~82614508 intergenic "RP1-34H18.1," "-," chr12~chr12 77718994 82614508 4 ++ 1.386294 3 3 0 3 4 TCGA-FX-A3NK-01A-11R-A21T-07 RP1-34H18.1~RP11-362K2.2 fusion "RP1-34H18.1," "RP11-362K2.2," chr12~chr12 77718994 59199723 19 ++ 2.333197 19 15 4 19 48 TCGA-FX-A3NK-01A-11R-A21T-07 RP1-34H18.1~RP11-362K2.2 fusion "RP1-34H18.1," "RP11-362K2.2," chr12~chr12 77718994 59206196 15 ++ 2.395908 14 10 4 14 38 TCGA-FX-A3NK-01A-11R-A21T-07 RP1-34H18.1~SYT1 fusion "RP1-34H18.1," "SYT1," chr12~chr12 77718994 79371579 8 ++ 1.906155 4 2 2 4 14 TCGA-FX-A3NK-01A-11R-A21T-07 RP1-34H18.1~YEATS4 fusion "RP1-34H18.1," "YEATS4," chr12~chr12 77718994 69783927 3 ++ 1.098612 3 0 3 3 8 TCGA-FX-A3NK-01A-11R-A21T-07 RP11-120I21.2~COX6C fusion "RP11-120I21.2," "COX6C," chr8~chr8 84825070 100904280 16 +- 2.512659 16 10 6 16 26 TCGA-FX-A3NK-01A-11R-A21T-07 RP11-136F16.1~OSBPL8 fusion "RP11-136F16.1," "OSBPL8," chr12~chr12 78449965 76881398 9 -- 2.197225 6 1 5 6 6 TCGA-FX-A3NK-01A-11R-A21T-07 RP11-20E24.1~LIN7A fusion "RP11-20E24.1," "LIN7A," chr12~chr12 76956138 81283148 5 +- 1.609438 5 1 4 5 12 TCGA-FX-A3NK-01A-11R-A21T-07 RP11-288D9.1~PTPRQ fusion "RP11-288D9.1," "PTPRQ," chr12~chr12 80849275 80862489 8 -+ 2.079442 8 3 5 8 22 TCGA-FX-A3NK-01A-11R-A21T-07 RP11-571M6.15~Nchr12~78450154 intergenic "METTL21B,RP11-571M6.15," "-," chr12~chr12 58166911 78450154 4 +- 1.386294 4 0 4 4 48 TCGA-FX-A3NK-01A-11R-A21T-07 RP11-571M6.15~RP11-136F16.1 fusion "METTL21B,RP11-571M6.15," "RP11-136F16.1," chr12~chr12 58166911 78450124 21 +- 2.51641 17 7 10 17 46 TCGA-FX-A3NK-01A-11R-A21T-07 RP11-620J15.3~TRMT11 fusion "RP11-620J15.3," "TRMT11," chr12~chr6 58329253 126342306 10 -+ 2.025326 9 2 7 9 44 TCGA-FX-A3NK-01A-11R-A21T-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 4 ++ 1.386294 4 2 2 4 8 TCGA-FX-A3NK-01A-11R-A21T-07 SAMD5~SASH1 fusion "SAMD5," "SASH1," chr6~chr6 147830523 148711270 4 ++ 1.386294 3 1 2 3 8 TCGA-FX-A3NK-01A-11R-A21T-07 SHC2~ZNF559 fusion "SHC2," "ZNF559," chr19~chr19 430684 9451778 3 -+ 1.098612 2 1 1 2 4 TCGA-FX-A3NK-01A-11R-A21T-07 SLC44A2~CDK19 fusion "SLC44A2," "CDK19," chr19~chr6 10713237 110991744 10 +- 2.025326 7 1 6 7 26 TCGA-FX-A3NK-01A-11R-A21T-07 SLC44A2~Nchr6~98792210 intergenic "SLC44A2," "-," chr19~chr6 10713237 98792210 4 +- 1.386294 4 0 4 4 8 TCGA-FX-A3NK-01A-11R-A21T-07 SLC44A2~PTPRQ fusion "SLC44A2," "PTPRQ," chr19~chr12 10713237 80981908 9 ++ 2.197225 9 9 0 9 12 TCGA-FX-A3NK-01A-11R-A21T-07 SMARCA4~MYF5 fusion "SMARCA4," "MYF5," chr19~chr12 11071850 81110819 12 ++ 1.907284 12 12 0 12 18 TCGA-FX-A3NK-01A-11R-A21T-07 SYT1~Nchr12~70475719 intergenic "SYT1," "-," chr12~chr12 79371711 70475719 3 ++ 1.098612 1 1 0 1 12 TCGA-FX-A3NK-01A-11R-A21T-07 SYT1~Nchr12~73711586 intergenic "SYT1," "-," chr12~chr12 79371711 73711586 14 +- 1.908535 7 1 6 7 22 TCGA-FX-A3NK-01A-11R-A21T-07 SYT1~Nchr12~73733556 intergenic "SYT1," "-," chr12~chr12 79611465 73733556 3 ++ 1.098612 3 2 1 3 6 TCGA-FX-A3NK-01A-11R-A21T-07 TMTC2~Nchr12~69494876 intergenic "TMTC2," "-," chr12~chr12 83081448 69494876 4 ++ 1.039721 2 1 1 2 6 TCGA-FX-A3NK-01A-11R-A21T-07 TP53BP1~ATP8B4 fusion "TP53BP1," "ATP8B4," chr15~chr15 43762056 50366382 3 -- 1.098612 3 3 0 3 4 TCGA-FX-A3NK-01A-11R-A21T-07 TPH2~Nchr12~82467506 intergenic "TPH2," "-," chr12~chr12 72425171 82467506 4 +- 1.386294 1 1 0 1 6 TCGA-FX-A3NK-01A-11R-A21T-07 TRHDE~RP11-54A9.1 fusion "TRHDE," "RP11-54A9.1," chr12~chr12 72863692 76685896 3 ++ 1.098612 3 1 2 3 10 TCGA-FX-A3NK-01A-11R-A21T-07 UACA~Nchr12~74551664 intergenic "UACA," "-," chr15~chr12 71055669 74551664 16 -- 2.512659 9 5 4 9 38 TCGA-FX-A3NK-01A-11R-A21T-07 UTRN~Nchr6~100742767 intergenic "UTRN," "-," chr6~chr6 144780490 100742767 6 +- 1.56071 6 2 4 6 28 TCGA-FX-A3NK-01A-11R-A21T-07 UTRN~Nchr6~100748588 intergenic "UTRN," "-," chr6~chr6 144780490 100748588 9 +- 1.889159 9 8 1 9 46 TCGA-FX-A3NK-01A-11R-A21T-07 UTRN~Nchr6~100758852 intergenic "UTRN," "-," chr6~chr6 144780490 100758852 4 +- 1.039721 4 1 3 4 6 TCGA-FX-A3NK-01A-11R-A21T-07 VTA1~PPIL4 fusion "VTA1," "PPIL4," chr6~chr6 142491558 149826840 5 +- 1.609438 5 3 2 5 36 TCGA-FX-A3NK-01A-11R-A21T-07 VTA1~PPIL4 fusion "VTA1," "PPIL4," chr6~chr6 142491558 149833415 5 +- 1.332179 5 2 3 5 38 TCGA-FX-A3NK-01A-11R-A21T-07 WASF1~SLC41A3 fusion "WASF1," "SLC41A3," chr6~chr3 110434529 125731592 14 -- 2.069202 13 8 5 13 54 TCGA-FX-A3NK-01A-11R-A21T-07 YEATS4~Nchr12~79165713 intergenic "YEATS4," "-," chr12~chr12 69764755 79165713 6 +- 1.56071 5 3 2 5 10 TCGA-FX-A3NK-01A-11R-A21T-07 ZNF560~OS9 fusion "ZNF560," "OS9," chr19~chr12 9608804 58109543 6 -+ 1.791759 3 3 0 3 2 TCGA-DX-A6BG-01A-11R-A30C-07 AGAP2~CNOT2 fusion "AGAP2," "CNOT2," chr12~chr12 58125149 70729218 6 -+ 1.56071 5 1 4 5 14 TCGA-DX-A6BG-01A-11R-A30C-07 AGAP2~Nchr12~75411794 intergenic "AGAP2," "-," chr12~chr12 58125149 75411794 23 -- 2.731527 28 8 15 28 38 TCGA-DX-A6BG-01A-11R-A30C-07 AGAP2~Nchr12~75411982 intergenic "AGAP2," "-," chr12~chr12 58125149 75411982 16 -- 1.813082 17 13 3 17 38 TCGA-DX-A6BG-01A-11R-A30C-07 ATXN7L3B~Nchr5~144525453 intergenic "ATXN7L3B," "-," chr12~chr5 74932490 144525453 6 ++ 1.329661 6 6 0 6 14 TCGA-DX-A6BG-01A-11R-A30C-07 BRP44~DNM3 fusion "BRP44," "DNM3," chr1~chr1 167904971 172356273 20 -+ 2.25026 20 6 14 20 42 TCGA-DX-A6BG-01A-11R-A30C-07 BRP44~NUDT12 fusion "BRP44," "NUDT12," chr1~chr5 167904971 102895951 4 -- 1.039721 3 0 3 3 60 TCGA-DX-A6BG-01A-11R-A30C-07 BRP44~NUDT12 fusion "BRP44," "NUDT12," chr1~chr5 167904971 102895955 14 -- 1.809514 14 2 12 14 60 TCGA-DX-A6BG-01A-11R-A30C-07 C12orf26~CPM fusion "C12orf26," "CPM," chr12~chr12 82850599 69326620 15 +- 2.211069 11 5 6 11 24 TCGA-DX-A6BG-01A-11R-A30C-07 CCT2~CACNG3 fusion "CCT2," "CACNG3," chr12~chr16 69979304 24371669 2 ++ 0.693147 2 0 2 2 1000 TCGA-DX-A6BG-01A-11R-A30C-07 CCT2~CACNG3 fusion "CCT2," "CACNG3," chr12~chr16 69979304 24372673 584 ++ 3.123055 594 2 567 594 1256 TCGA-DX-A6BG-01A-11R-A30C-07 CCT2~CACNG3 fusion "CCT2," "CACNG3," chr12~chr16 69979304 24372920 9 ++ 1.889159 9 0 9 9 178 TCGA-DX-A6BG-01A-11R-A30C-07 CNOT2~Nchr15~78027395 intergenic "CNOT2,CNOT2,CNOT2," "-," chr12~chr15 70637260 78027395 28 +- 2.245049 5 0 5 5 6 TCGA-DX-A6BG-01A-11R-A30C-07 COL1A1~CD74 fusion "COL1A1," "CD74," chr17~chr5 48265507 149785883 4 -- 1.039721 2 0 2 2 4 TCGA-DX-A6BG-01A-11R-A30C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273675 94037648 3 -+ 1.098612 2 1 1 2 16 TCGA-DX-A6BG-01A-11R-A30C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264376 94038082 7 -+ 0.796312 4 1 3 4 80 TCGA-DX-A6BG-01A-11R-A30C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266103 94038634 2 -+ 0.693147 2 1 1 2 58 TCGA-DX-A6BG-01A-11R-A30C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264104 94041957 2 -+ 0.693147 2 2 0 2 48 TCGA-DX-A6BG-01A-11R-A30C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273675 94047856 6 -+ 1.329661 4 4 0 4 38 TCGA-DX-A6BG-01A-11R-A30C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48276917 189849957 3 -+ 1.098612 2 1 1 2 4 TCGA-DX-A6BG-01A-11R-A30C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48273675 189856910 3 -+ 1.098612 2 0 2 2 44 TCGA-DX-A6BG-01A-11R-A30C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48269149 189858087 5 -+ 0.500402 5 5 0 5 30 TCGA-DX-A6BG-01A-11R-A30C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272795 189858123 5 -+ 0.950271 3 3 0 3 74 TCGA-DX-A6BG-01A-11R-A30C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48271934 189858960 7 -+ 0.410116 7 6 1 7 54 TCGA-DX-A6BG-01A-11R-A30C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268836 189862999 3 -+ 0.636514 3 1 2 3 44 TCGA-DX-A6BG-01A-11R-A30C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268744 189864196 8 -+ 1.732868 7 6 1 7 84 TCGA-DX-A6BG-01A-11R-A30C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272593 189864568 2 -+ 0.693147 2 1 1 2 56 TCGA-DX-A6BG-01A-11R-A30C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268178 189870076 7 -+ 0.9557 6 6 0 6 30 TCGA-DX-A6BG-01A-11R-A30C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48264880 189871071 2 -+ 0.693147 2 1 1 2 108 TCGA-DX-A6BG-01A-11R-A30C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266335 189872263 3 -+ 0.636514 1 1 0 1 66 TCGA-DX-A6BG-01A-11R-A30C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265891 189872611 4 -+ 1.039721 1 0 1 1 18 TCGA-DX-A6BG-01A-11R-A30C-07 COL1A1~COL6A1 fusion "COL1A1," "COL6A1," chr17~chr21 48273978 47411924 22 -+ 1.554433 15 15 0 15 4 TCGA-DX-A6BG-01A-11R-A30C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94048824 48265983 4 +- 1.386294 2 0 2 2 102 TCGA-DX-A6BG-01A-11R-A30C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049598 48265998 3 +- 1.098612 2 0 2 2 50 TCGA-DX-A6BG-01A-11R-A30C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94054536 48266156 7 +- 0.410116 7 1 6 7 44 TCGA-DX-A6BG-01A-11R-A30C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94037692 48271402 3 +- 1.098612 2 0 2 2 26 TCGA-DX-A6BG-01A-11R-A30C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049598 48272981 3 +- 0.636514 3 2 1 3 76 TCGA-DX-A6BG-01A-11R-A30C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48273560 13 +- 1.991509 7 1 6 7 102 TCGA-DX-A6BG-01A-11R-A30C-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94040219 189859469 11 ++ 0.304636 10 0 10 10 6 TCGA-DX-A6BG-01A-11R-A30C-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94043552 189862062 7 ++ 1.277034 5 4 1 5 24 TCGA-DX-A6BG-01A-11R-A30C-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94049756 189864196 3 ++ 0.636514 2 2 0 2 20 TCGA-DX-A6BG-01A-11R-A30C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189858808 48271402 8 +- 0.735622 8 1 7 8 38 TCGA-DX-A6BG-01A-11R-A30C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189857666 48271544 3 +- 1.098612 3 2 1 3 26 TCGA-DX-A6BG-01A-11R-A30C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189857666 48273026 5 +- 1.332179 4 3 1 4 26 TCGA-DX-A6BG-01A-11R-A30C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189856448 48274424 6 +- 1.329661 6 2 4 6 18 TCGA-DX-A6BG-01A-11R-A30C-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189855772 94034039 2 ++ 0.693147 2 1 1 2 6 TCGA-DX-A6BG-01A-11R-A30C-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189859557 94044538 3 ++ 1.098612 3 0 3 3 12 TCGA-DX-A6BG-01A-11R-A30C-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189875468 94058595 4 ++ 0.562335 4 1 3 4 44 TCGA-DX-A6BG-01A-11R-A30C-07 CTD-2021H9.1~Nchr1~57181946 intergenic "CTD-2021H9.1," "-," chr12~chr1 71417814 57181946 3 ++ 1.098612 3 3 0 3 4 TCGA-DX-A6BG-01A-11R-A30C-07 CTD-2021H9.1~Nchr1~57181946 intergenic "CTD-2021H9.1," "-," chr12~chr1 71421464 57181946 4 ++ 1.039721 4 1 3 4 18 TCGA-DX-A6BG-01A-11R-A30C-07 CTDSP2~Nchr1~167174295 intergenic "CTDSP2," "-," chr12~chr1 58240155 167174295 6 -- 1.56071 6 5 1 6 18 TCGA-DX-A6BG-01A-11R-A30C-07 CTDSP2~RP11-277B15.2 fusion "CTDSP2," "RP11-277B15.2," chr12~chr1 58240155 167164393 114 -- 3.225359 105 97 8 105 204 TCGA-DX-A6BG-01A-11R-A30C-07 DCAF6~PIGC fusion "DCAF6," "PIGC," chr1~chr1 167944253 172363550 15 +- 2.338372 13 5 8 13 76 TCGA-DX-A6BG-01A-11R-A30C-07 DCAF6~PIGC fusion "DCAF6," "PIGC," chr1~chr1 167956846 172363550 18 +- 2.399204 18 5 13 18 136 TCGA-DX-A6BG-01A-11R-A30C-07 DCAF6~PIGC fusion "DCAF6," "PIGC," chr1~chr1 167956846 172369056 8 +- 1.386294 8 5 3 8 190 TCGA-DX-A6BG-01A-11R-A30C-07 DNM3~CD247 fusion "DNM3," "CD247," chr1~chr1 172100428 167410004 53 +- 2.878259 41 22 19 41 156 TCGA-DX-A6BG-01A-11R-A30C-07 DROSHA~Nchr12~73133677 intergenic "DROSHA," "-," chr5~chr12 31429582 73133677 2 -- 0.693147 2 1 1 2 16 TCGA-DX-A6BG-01A-11R-A30C-07 FGGY~GOLGA2B fusion "FGGY," "GOLGA2B," chr1~chr12 59844509 100553746 13 +- 2.351673 12 9 3 12 60 TCGA-DX-A6BG-01A-11R-A30C-07 FRS2~Nchr12~100543888 intergenic "FRS2," "-," chr12~chr12 69951636 100543888 13 ++ 1.498569 11 4 7 11 20 TCGA-DX-A6BG-01A-11R-A30C-07 FRS2~Nchr12~67331197 intergenic "FRS2," "-," chr12~chr12 69931763 67331197 8 +- 1.213008 7 2 5 7 40 TCGA-DX-A6BG-01A-11R-A30C-07 FRS2~Nchr12~67331197 intergenic "FRS2," "-," chr12~chr12 69934554 67331197 3 +- 1.098612 3 1 2 3 8 TCGA-DX-A6BG-01A-11R-A30C-07 FRS2~Nchr12~67341262 intergenic "FRS2," "-," chr12~chr12 69931763 67341262 10 +- 1.834372 2 0 2 2 22 TCGA-DX-A6BG-01A-11R-A30C-07 FRS2~Nchr12~67344725 intergenic "FRS2," "-," chr12~chr12 69934554 67344725 4 +- 1.039721 4 0 4 4 136 TCGA-DX-A6BG-01A-11R-A30C-07 FRS2~Nchr12~67344725 intergenic "FRS2," "-," chr12~chr12 69925836 67344725 13 +- 1.626021 9 5 4 9 90 TCGA-DX-A6BG-01A-11R-A30C-07 FRS2~Nchr12~67344725 intergenic "FRS2," "-," chr12~chr12 69931763 67344725 4 +- 1.386294 3 2 1 3 124 TCGA-DX-A6BG-01A-11R-A30C-07 FRS2~Nchr12~67344738 intergenic "FRS2," "-," chr12~chr12 69931763 67344738 9 +- 1.889159 9 5 4 9 132 TCGA-DX-A6BG-01A-11R-A30C-07 FRS2~Nchr12~67344738 intergenic "FRS2," "-," chr12~chr12 69925836 67344738 2 +- 0.693147 2 1 1 2 100 TCGA-DX-A6BG-01A-11R-A30C-07 FRS2~Nchr12~67357945 intergenic "FRS2," "-," chr12~chr12 69931763 67357945 38 +- 2.785215 30 14 16 30 336 TCGA-DX-A6BG-01A-11R-A30C-07 FRS2~Nchr12~67357945 intergenic "FRS2," "-," chr12~chr12 69925836 67357945 35 +- 2.233003 16 5 11 16 278 TCGA-DX-A6BG-01A-11R-A30C-07 FRS2~Nchr12~75315277 intergenic "FRS2," "-," chr12~chr12 69925836 75315277 19 +- 1.849996 5 2 3 5 50 TCGA-DX-A6BG-01A-11R-A30C-07 FRS2~Nchr12~75315277 intergenic "FRS2," "-," chr12~chr12 69931763 75315277 4 +- 0.562335 4 0 4 4 62 TCGA-DX-A6BG-01A-11R-A30C-07 FRS2~Nchr1~167174295 intergenic "FRS2," "-," chr12~chr1 69925836 167174295 3 +- 0.636514 2 2 0 2 16 TCGA-DX-A6BG-01A-11R-A30C-07 FRS2~Nchr1~167174295 intergenic "FRS2," "-," chr12~chr1 69931763 167174295 3 +- 1.098612 2 2 0 2 14 TCGA-DX-A6BG-01A-11R-A30C-07 FRS2~Nchr1~167175638 intergenic "FRS2," "-," chr12~chr1 69925836 167175638 5 +- 1.609438 3 2 1 3 96 TCGA-DX-A6BG-01A-11R-A30C-07 FRS2~RAB21 fusion "FRS2," "RAB21," chr12~chr12 69864310 72163580 6 ++ 1.56071 5 2 3 5 14 TCGA-DX-A6BG-01A-11R-A30C-07 FRS2~RP11-277B15.2 fusion "FRS2," "RP11-277B15.2," chr12~chr1 69925836 167146052 2 +- 0.693147 1 1 0 1 16 TCGA-DX-A6BG-01A-11R-A30C-07 FRS2~RP11-277B15.2 fusion "FRS2," "RP11-277B15.2," chr12~chr1 69931763 167164393 12 +- 1.632631 8 6 2 8 108 TCGA-DX-A6BG-01A-11R-A30C-07 FRS2~RP11-277B15.2 fusion "FRS2," "RP11-277B15.2," chr12~chr1 69925836 167164393 15 +- 2.338372 9 8 1 9 82 TCGA-DX-A6BG-01A-11R-A30C-07 FRS2~ST8SIA4 fusion "FRS2," "ST8SIA4," chr12~chr5 69864310 100192100 2 +- 0.693147 1 0 1 1 20 TCGA-DX-A6BG-01A-11R-A30C-07 FRS2~ZFC3H1 fusion "FRS2," "ZFC3H1," chr12~chr12 69931763 72005667 40 +- 2.60142 34 12 22 34 354 TCGA-DX-A6BG-01A-11R-A30C-07 FRS2~ZFC3H1 fusion "FRS2," "ZFC3H1," chr12~chr12 69934554 72005667 5 +- 1.609438 5 1 4 5 168 TCGA-DX-A6BG-01A-11R-A30C-07 FRS2~ZFC3H1 fusion "FRS2," "ZFC3H1," chr12~chr12 69925836 72005667 63 +- 2.739983 39 10 29 39 298 TCGA-DX-A6BG-01A-11R-A30C-07 GOLIM4~Nchr3~169378280 intergenic "GOLIM4," "-," chr3~chr3 167754624 169378280 3 -- 0.636514 3 3 0 3 6 TCGA-DX-A6BG-01A-11R-A30C-07 GPR161~Nchr1~169058513 intergenic "GPR161," "-," chr1~chr1 168056823 169058513 5 -+ 1.332179 5 0 5 5 18 TCGA-DX-A6BG-01A-11R-A30C-07 GPR161~Nchr1~169066498 intergenic "GPR161," "-," chr1~chr1 168056823 169066498 2 -+ 0.693147 2 1 1 2 12 TCGA-DX-A6BG-01A-11R-A30C-07 GPR161~Nchr20~39027525 intergenic "GPR161," "-," chr1~chr20 168065746 39027525 3 -+ 1.098612 3 3 0 3 2 TCGA-DX-A6BG-01A-11R-A30C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31237288 31323156 9 -- 0.348832 7 3 4 7 18 TCGA-DX-A6BG-01A-11R-A30C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 196 -- 2.079781 196 194 2 196 260 TCGA-DX-A6BG-01A-11R-A30C-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 67 -- 2.067935 67 1 66 67 44 TCGA-DX-A6BG-01A-11R-A30C-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 323 -- 2.609928 193 36 156 193 10 TCGA-DX-A6BG-01A-11R-A30C-07 HMGA2~DAB1 fusion "HMGA2," "DAB1,DAB1," chr12~chr1 66232349 57463801 246 +- 3.082869 249 140 103 249 820 TCGA-DX-A6BG-01A-11R-A30C-07 ITGB6~CNOT2 fusion "ITGB6," "CNOT2," chr2~chr12 160964190 70731169 6 -+ 1.329661 6 5 1 6 18 TCGA-DX-A6BG-01A-11R-A30C-07 ITGB6~Nchr5~100914396 intergenic "ITGB6," "-," chr2~chr5 160998582 100914396 7 +- 1.747868 7 2 5 7 4 TCGA-DX-A6BG-01A-11R-A30C-07 KCNMB4~Nchr12~75012226 intergenic "KCNMB4," "-," chr12~chr12 70760850 75012226 2 +- 0.693147 2 1 1 2 16 TCGA-DX-A6BG-01A-11R-A30C-07 KCNMB4~Nchr5~38776222 intergenic "KCNMB4," "-," chr12~chr5 70760850 38776222 5 ++ 0.673012 5 5 0 5 8 TCGA-DX-A6BG-01A-11R-A30C-07 MDM2~Nchr12~77974190 intergenic "MDM2," "-," chr12~chr12 69214154 77974190 3 +- 1.098612 3 2 1 3 12 TCGA-DX-A6BG-01A-11R-A30C-07 MYLK~VAMP4 fusion "MYLK," "VAMP4," chr3~chr1 123512524 171679954 8 -- 1.559581 8 3 5 8 16 TCGA-DX-A6BG-01A-11R-A30C-07 NEO1~Nchr1~167529005 intergenic "NEO1," "-," chr15~chr1 73581579 167529005 43 +- 2.775973 42 20 22 42 136 TCGA-DX-A6BG-01A-11R-A30C-07 NEO1~Nchr1~167549838 intergenic "NEO1," "-," chr15~chr1 73581579 167549838 4 +- 1.386294 4 3 1 4 16 TCGA-DX-A6BG-01A-11R-A30C-07 NUDT12~Nchr12~70565511 intergenic "NUDT12," "-," chr5~chr12 102898404 70565511 7 -- 1.747868 6 6 0 6 22 TCGA-DX-A6BG-01A-11R-A30C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 33 -+ 2.414236 15 0 15 15 20 TCGA-DX-A6BG-01A-11R-A30C-07 Nchr12~67331094~ZFC3H1 intergenic "-," "ZFC3H1," chr12~chr12 67331094 72005667 3 -- 1.098612 2 2 0 2 50 TCGA-DX-A6BG-01A-11R-A30C-07 Nchr12~67331098~ZFC3H1 intergenic "-," "ZFC3H1," chr12~chr12 67331098 72005667 9 -- 1.676988 9 2 7 9 52 TCGA-DX-A6BG-01A-11R-A30C-07 Nchr12~67334259~ZFC3H1 intergenic "-," "ZFC3H1," chr12~chr12 67334259 72005667 6 -- 1.011404 6 2 4 6 94 TCGA-DX-A6BG-01A-11R-A30C-07 Nchr12~67341168~ZFC3H1 intergenic "-," "ZFC3H1," chr12~chr12 67341168 72005667 16 -- 2.133382 14 1 13 14 124 TCGA-DX-A6BG-01A-11R-A30C-07 Nchr12~67357818~ZFC3H1 intergenic "-," "ZFC3H1," chr12~chr12 67357818 72005667 30 -- 2.361025 23 1 22 23 84 TCGA-DX-A6BG-01A-11R-A30C-07 Nchr12~73110445~RP1-34H18.1 intergenic "-," "RP1-34H18.1," chr12~chr12 73110445 77965639 4 ++ 1.386294 2 0 2 2 6 TCGA-DX-A6BG-01A-11R-A30C-07 Nchr12~77794708~ZFC3H1 intergenic "-," "ZFC3H1," chr12~chr12 77794708 72005667 5 -- 1.332179 5 1 4 5 6 TCGA-DX-A6BG-01A-11R-A30C-07 Nchr12~85817982~Nchr12~77079425 intergenic "-," "-," chr12~chr12 85817982 77079425 2 +- 0.693147 2 2 0 2 2 TCGA-DX-A6BG-01A-11R-A30C-07 Nchr12~85817982~Nchr12~77079651 intergenic "-," "-," chr12~chr12 85817982 77079651 2 +- 0.693147 2 1 1 2 4 TCGA-DX-A6BG-01A-11R-A30C-07 Nchr12~85817982~Nchr12~77085503 intergenic "-," "-," chr12~chr12 85817982 77085503 4 +- 1.386294 2 2 0 2 4 TCGA-DX-A6BG-01A-11R-A30C-07 Nchr15~78027334~Nchr18~27929975 intergenic "-," "-," chr15~chr18 78027334 27929975 10 -+ 1.834372 7 0 7 7 8 TCGA-DX-A6BG-01A-11R-A30C-07 Nchr15~78027334~Nchr1~59241664 intergenic "-," "-," chr15~chr1 78027334 59241664 8 -+ 1.906155 1 1 0 1 6 TCGA-DX-A6BG-01A-11R-A30C-07 Nchr18~28001493~PDZD2 intergenic "-," "PDZD2," chr18~chr5 28001493 32069675 2 ++ 0.693147 1 0 1 1 14 TCGA-DX-A6BG-01A-11R-A30C-07 Nchr1~22755507~RAB21 intergenic "-," "RAB21," chr1~chr12 22755507 72163580 9 ++ 1.83102 9 3 6 9 72 TCGA-DX-A6BG-01A-11R-A30C-07 Nchr1~59241878~Nchr18~27929975 intergenic "-," "-," chr1~chr18 59241878 27929975 10 ++ 1.609438 7 2 5 7 44 TCGA-DX-A6BG-01A-11R-A30C-07 Nchr20~38597390~Nchr5~100922292 intergenic "-," "-," chr20~chr5 38597390 100922292 5 -- 1.609438 5 2 3 5 72 TCGA-DX-A6BG-01A-11R-A30C-07 Nchr5~144647862~Nchr5~144846002 intergenic "-," "-," chr5~chr5 144647862 144846002 6 -- 1.56071 5 4 1 5 92 TCGA-DX-A6BG-01A-11R-A30C-07 OSMR~DNM3 fusion "OSMR," "DNM3," chr5~chr1 38869219 172050972 44 ++ 2.5195 34 19 15 34 164 TCGA-DX-A6BG-01A-11R-A30C-07 OSMR~METTL1 fusion "OSMR," "METTL1," chr5~chr12 38869219 58163739 2 +- 0.693147 2 1 1 2 12 TCGA-DX-A6BG-01A-11R-A30C-07 OSMR~Nchr1~57181946 intergenic "OSMR," "-," chr5~chr1 38869219 57181946 2 ++ 0.693147 2 1 1 2 24 TCGA-DX-A6BG-01A-11R-A30C-07 PAM~ARHGAP15 fusion "PAM," "ARHGAP15," chr5~chr2 102091052 144525558 5 ++ 1.332179 5 5 0 5 6 TCGA-DX-A6BG-01A-11R-A30C-07 PAM~RP4-644L1.2 fusion "PAM," "RP4-644L1.2," chr5~chr20 102091052 39326762 10 +- 1.886697 10 10 0 10 4 TCGA-DX-A6BG-01A-11R-A30C-07 PMM2~Nchr5~144648200 intergenic "PMM2," "-," chr16~chr5 8900264 144648200 47 +- 2.665843 46 19 27 46 270 TCGA-DX-A6BG-01A-11R-A30C-07 PMM2~Nchr5~144648252 intergenic "PMM2," "-," chr16~chr5 8895767 144648252 4 +- 0.562335 4 0 4 4 22 TCGA-DX-A6BG-01A-11R-A30C-07 PMM2~Nchr5~144648252 intergenic "PMM2," "-," chr16~chr5 8900264 144648252 20 +- 2.289952 20 11 9 20 306 TCGA-DX-A6BG-01A-11R-A30C-07 PMM2~Nchr5~144650702 intergenic "PMM2," "-," chr16~chr5 8900264 144650702 14 +- 2.069202 13 10 3 13 120 TCGA-DX-A6BG-01A-11R-A30C-07 PMM2~Nchr5~144651608 intergenic "PMM2," "-," chr16~chr5 8900264 144651608 26 +- 2.704781 24 15 9 24 56 TCGA-DX-A6BG-01A-11R-A30C-07 PMM2~Nchr5~144842239 intergenic "PMM2," "-," chr16~chr5 8900264 144842239 11 +- 2.094729 12 4 7 12 50 TCGA-DX-A6BG-01A-11R-A30C-07 RICTOR~Nchr10~9969481 intergenic "RICTOR," "-," chr5~chr10 38971979 9969481 15 -- 2.118649 10 7 3 10 22 TCGA-DX-A6BG-01A-11R-A30C-07 RICTOR~Nchr20~39516355 intergenic "RICTOR," "-," chr5~chr20 39074213 39516355 8 -+ 1.667462 8 7 1 8 34 TCGA-DX-A6BG-01A-11R-A30C-07 RICTOR~RP11-277B15.2 fusion "RICTOR," "RP11-277B15.2," chr5~chr1 39074213 167164393 4 -- 1.386294 4 2 2 4 16 TCGA-DX-A6BG-01A-11R-A30C-07 RP11-611E13.2~Nchr12~74839598 intergenic "RP11-611E13.2," "-," chr12~chr12 70636575 74839598 3 -- 0.636514 3 0 3 3 12 TCGA-DX-A6BG-01A-11R-A30C-07 SFT2D2~GPR161 fusion "SFT2D2," "GPR161," chr1~chr1 168195380 168074132 3 +- 0.636514 3 3 0 3 14 TCGA-DX-A6BG-01A-11R-A30C-07 SYT1~Nchr12~73711586 intergenic "SYT1," "-," chr12~chr12 79258889 73711586 8 +- 1.906155 1 0 1 1 2 TCGA-DX-A6BG-01A-11R-A30C-07 SYT1~Nchr12~85235121 intergenic "SYT1," "-," chr12~chr12 79258889 85235121 4 +- 1.386294 1 1 0 1 18 TCGA-DX-A6BG-01A-11R-A30C-07 TBC1D15~CNOT2 fusion "TBC1D15," "CNOT2," chr12~chr12 72290560 70731169 8 ++ 1.320888 8 4 4 8 14 TCGA-DX-A6BG-01A-11R-A30C-07 TBC1D15~Nchr2~173508882 intergenic "TBC1D15," "-," chr12~chr2 72233591 173508882 5 +- 1.609438 5 0 5 5 2 TCGA-DX-A6BG-01A-11R-A30C-07 TIPRL~EFTUD1 fusion "TIPRL," "EFTUD1," chr1~chr15 168148419 82456325 65 +- 3.183786 57 20 37 57 246 TCGA-DX-A6BG-01A-11R-A30C-07 TM9SF4~Nchr1~170855997 intergenic "TM9SF4," "-," chr20~chr1 30720929 170855997 28 ++ 2.104745 27 18 9 27 134 TCGA-DX-A6BG-01A-11R-A30C-07 TOP1~LYZ fusion "TOP1," "LYZ," chr20~chr12 39729993 69743888 3 ++ 1.098612 3 1 2 3 14 TCGA-DX-A6BG-01A-11R-A30C-07 TPX2~RP5-1121H13.4 fusion "TPX2," "RP5-1121H13.4," chr20~chr20 30345385 40619786 3 ++ 1.098612 2 2 0 2 4 TCGA-DX-A6BG-01A-11R-A30C-07 UHRF1BP1L~CACNG3 fusion "UHRF1BP1L," "CACNG3," chr12~chr16 100536370 24372673 17 -+ 2.282374 15 7 8 15 36 TCGA-DX-A6BG-01A-11R-A30C-07 UHRF1BP1L~Nchr16~24382334 intergenic "UHRF1BP1L," "-," chr12~chr16 100476794 24382334 384 -- 2.94889 393 253 120 393 2152 TCGA-DX-A6BG-01A-11R-A30C-07 UHRF1BP1L~Nchr16~24386724 intergenic "UHRF1BP1L," "-," chr12~chr16 100476794 24386724 7 -- 1.277034 7 1 6 7 26 TCGA-DX-A6BG-01A-11R-A30C-07 UHRF1BP1L~RP11-620J15.1 fusion "UHRF1BP1L," "RP11-620J15.1," chr12~chr12 100536370 58236042 3 -+ 1.098612 3 2 1 3 4 TCGA-DX-A6BG-01A-11R-A30C-07 UHRF1BP1L~TSFM fusion "UHRF1BP1L," "TSFM," chr12~chr12 100536370 58189960 3 -+ 1.098612 3 3 0 3 54 TCGA-DX-A6BG-01A-11R-A30C-07 UHRF1BP1L~TSFM fusion "UHRF1BP1L," "TSFM," chr12~chr12 100522358 58189960 26 -+ 2.228261 24 11 13 24 120 TCGA-DX-A6BG-01A-11R-A30C-07 UHRF1BP1L~XRCC6BP1 fusion "UHRF1BP1L," "XRCC6BP1," chr12~chr12 100536370 58345541 4 -+ 0.562335 4 4 0 4 8 TCGA-DX-A6BG-01A-11R-A30C-07 ZEB1~SYT1 fusion "ZEB1," "SYT1," chr10~chr12 31608221 79258778 5 ++ 1.05492 4 0 4 4 12 TCGA-DX-A6BG-01A-11R-A30C-07 ZFC3H1~ITGB6 fusion "ZFC3H1," "ITGB6," chr12~chr2 72003960 160998582 97 -- 2.717707 96 50 44 96 366 TCGA-DX-A6BG-01A-11R-A30C-07 ZFC3H1~ITGB6 fusion "ZFC3H1," "ITGB6," chr12~chr2 72004475 160998582 2 -- 0.693147 2 1 1 2 4 TCGA-DX-A6BG-01A-11R-A30C-07 ZFC3H1~Nchr20~37984377 intergenic "ZFC3H1," "-," chr12~chr20 72003960 37984377 27 -- 2.711671 27 12 15 27 136 TCGA-DX-A6BG-01A-11R-A30C-07 ZFC3H1~Nchr20~37987911 intergenic "ZFC3H1," "-," chr12~chr20 72003960 37987911 10 -- 1.893788 10 6 3 10 120 TCGA-DX-A6BG-01A-11R-A30C-07 ZFC3H1~Nchr5~100903336 intergenic "ZFC3H1," "-," chr12~chr5 72003960 100903336 15 -+ 2.252728 16 11 4 16 110 TCGA-DX-A6BG-01A-11R-A30C-07 ZFC3H1~Nchr5~100907530 intergenic "ZFC3H1," "-," chr12~chr5 72003960 100907530 32 -+ 2.466878 32 10 21 32 98 TCGA-DX-A6BG-01A-11R-A30C-07 ZHX3~Nchr5~100581583 intergenic "ZHX3," "-," chr20~chr5 39897630 100581583 31 -- 2.512341 14 4 10 14 14 TCGA-DX-A6BG-01A-11R-A30C-07 ZHX3~Nchr5~100581583 intergenic "ZHX3," "-," chr20~chr5 39896103 100581583 4 -- 1.039721 3 3 0 3 20 TCGA-DX-A6BG-01A-11R-A30C-07 ZHX3~Nchr5~100581583 intergenic "ZHX3," "-," chr20~chr5 39867328 100581583 10 -- 1.220607 3 3 0 3 16 TCGA-DX-A6BG-01A-11R-A30C-07 ZSWIM6~Nchr12~73110296 intergenic "ZSWIM6," "-," chr5~chr12 60628775 73110296 2 ++ 0.693147 1 1 0 1 6 TCGA-DX-A6BH-01A-12R-A30C-07 AASS~C7orf58 fusion "AASS," "C7orf58," chr7~chr7 121731757 120815811 3 -+ 0.636514 3 2 1 3 10 TCGA-DX-A6BH-01A-12R-A30C-07 AASS~DNM3 fusion "AASS," "DNM3," chr7~chr1 121731757 172078407 2 -+ 0.693147 2 1 1 2 8 TCGA-DX-A6BH-01A-12R-A30C-07 AASS~DNM3 fusion "AASS," "DNM3," chr7~chr1 121731757 172100315 44 -+ 3.169501 33 9 24 33 104 TCGA-DX-A6BH-01A-12R-A30C-07 AASS~GPR111 fusion "AASS," "GPR111," chr7~chr6 121753172 47647942 5 -+ 0.950271 5 5 0 5 30 TCGA-DX-A6BH-01A-12R-A30C-07 AASS~Nchr12~75012226 intergenic "AASS," "-," chr7~chr12 121753172 75012226 11 -- 1.46814 10 6 4 10 22 TCGA-DX-A6BH-01A-12R-A30C-07 AASS~Nchr7~115561443 intergenic "AASS," "-," chr7~chr7 121731757 115561443 6 -- 1.791759 6 4 2 6 8 TCGA-DX-A6BH-01A-12R-A30C-07 AASS~Nchr7~115562504 intergenic "AASS," "-," chr7~chr7 121731757 115562504 6 -- 1.011404 6 3 3 6 6 TCGA-DX-A6BH-01A-12R-A30C-07 AASS~Nchr7~119553332 intergenic "AASS," "-," chr7~chr7 121731757 119553332 11 -+ 1.972247 11 4 7 11 24 TCGA-DX-A6BH-01A-12R-A30C-07 AASS~Nchr7~119575106 intergenic "AASS," "-," chr7~chr7 121731757 119575106 6 -+ 1.242453 6 1 5 6 6 TCGA-DX-A6BH-01A-12R-A30C-07 AC009784.3~C12orf28 fusion "AC009784.3," "C12orf28," chr7~chr12 136013845 70351602 24 ++ 2.463105 13 12 1 13 50 TCGA-DX-A6BH-01A-12R-A30C-07 AC009784.3~C12orf28 fusion "AC009784.3," "C12orf28," chr7~chr12 136013845 70351610 3 ++ 1.098612 3 3 0 3 50 TCGA-DX-A6BH-01A-12R-A30C-07 AC009784.3~C12orf28 fusion "AC009784.3," "C12orf28," chr7~chr12 136013845 70352029 2 ++ 0.693147 2 2 0 2 28 TCGA-DX-A6BH-01A-12R-A30C-07 AC009784.3~C12orf28 fusion "AC009784.3," "C12orf28," chr7~chr12 136013845 70352225 4 ++ 1.386294 3 2 1 3 14 TCGA-DX-A6BH-01A-12R-A30C-07 AIG1~Nchr7~122910577 intergenic "AIG1," "-," chr6~chr7 143486320 122910577 4 +- 1.039721 4 2 2 4 2 TCGA-DX-A6BH-01A-12R-A30C-07 AIG1~Nchr7~122917843 intergenic "AIG1," "-," chr6~chr7 143486320 122917843 13 +- 1.818483 13 5 8 13 36 TCGA-DX-A6BH-01A-12R-A30C-07 AIG1~Nchr7~122967639 intergenic "AIG1," "-," chr6~chr7 143486320 122967639 10 +- 0.801819 9 4 5 9 24 TCGA-DX-A6BH-01A-12R-A30C-07 AKAP12~CCND3 fusion "AKAP12," "CCND3," chr6~chr6 151561859 41905132 11 +- 1.972247 11 11 0 11 6 TCGA-DX-A6BH-01A-12R-A30C-07 AKAP12~CCND3 fusion "AKAP12," "CCND3," chr6~chr6 151561859 41908323 18 +- 2.043192 17 16 1 17 26 TCGA-DX-A6BH-01A-12R-A30C-07 C12orf28~CPM fusion "C12orf28," "CPM," chr12~chr12 70349217 69357080 10 +- 2.025326 5 5 0 5 2 TCGA-DX-A6BH-01A-12R-A30C-07 C12orf28~Nchr12~69371801 intergenic "C12orf28," "-," chr12~chr12 70349217 69371801 135 +- 3.060916 85 84 1 85 68 TCGA-DX-A6BH-01A-12R-A30C-07 CADPS2~AHCYL2 fusion "CADPS2," "AHCYL2," chr7~chr7 122526053 129019479 3 -+ 0.636514 3 3 0 3 2 TCGA-DX-A6BH-01A-12R-A30C-07 CADPS2~Nchr12~69838103 intergenic "CADPS2," "-," chr7~chr12 122526053 69838103 3 -- 0.636514 3 2 1 3 6 TCGA-DX-A6BH-01A-12R-A30C-07 CADPS2~Nchr12~69856334 intergenic "CADPS2," "-," chr7~chr12 122526053 69856334 3 -- 1.098612 3 2 1 3 14 TCGA-DX-A6BH-01A-12R-A30C-07 CADPS2~XRCC6BP1 fusion "CADPS2," "XRCC6BP1," chr7~chr12 122526053 58339411 25 -+ 2.133095 24 17 7 24 308 TCGA-DX-A6BH-01A-12R-A30C-07 CADPS2~XRCC6BP1 fusion "CADPS2," "XRCC6BP1," chr7~chr12 122525448 58339411 39 -+ 2.574357 38 24 14 38 410 TCGA-DX-A6BH-01A-12R-A30C-07 CADPS2~XRCC6BP1 fusion "CADPS2," "XRCC6BP1," chr7~chr12 122526053 58340778 5 -+ 0.950271 5 5 0 5 256 TCGA-DX-A6BH-01A-12R-A30C-07 CADPS2~XRCC6BP1 fusion "CADPS2," "XRCC6BP1," chr7~chr12 122526053 58345541 74 -+ 2.763362 72 49 23 72 216 TCGA-DX-A6BH-01A-12R-A30C-07 CADPS2~XRCC6BP1 fusion "CADPS2," "XRCC6BP1," chr7~chr12 122526053 58350470 10 -+ 2.025326 10 6 4 10 10 TCGA-DX-A6BH-01A-12R-A30C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266531 94034039 17 -+ 0.223718 16 15 1 16 16 TCGA-DX-A6BH-01A-12R-A30C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272450 189866262 5 -+ 0.950271 5 3 2 5 4 TCGA-DX-A6BH-01A-12R-A30C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48264411 189867745 4 -+ 1.039721 4 3 1 4 2 TCGA-DX-A6BH-01A-12R-A30C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48271736 189870164 4 -+ 1.386294 4 3 1 4 4 TCGA-DX-A6BH-01A-12R-A30C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48271934 189871071 2 -+ 0.693147 2 1 1 2 4 TCGA-DX-A6BH-01A-12R-A30C-07 COL1A1~SGCA fusion "COL1A1," "SGCA," chr17~chr17 48275310 48246624 3 -+ 1.098612 1 1 0 1 316 TCGA-DX-A6BH-01A-12R-A30C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94048824 48265983 3 +- 1.098612 1 0 1 1 4 TCGA-DX-A6BH-01A-12R-A30C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94052430 48270175 8 +- 1.213008 5 1 4 5 12 TCGA-DX-A6BH-01A-12R-A30C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189868157 48275850 3 +- 0.636514 3 2 1 3 2 TCGA-DX-A6BH-01A-12R-A30C-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189870183 94054922 4 ++ 1.039721 4 3 1 4 4 TCGA-DX-A6BH-01A-12R-A30C-07 CPSF6~GRM8 fusion "CPSF6," "GRM8," chr12~chr7 69656342 126746766 28 +- 2.434463 28 9 19 28 42 TCGA-DX-A6BH-01A-12R-A30C-07 CPSF6~Nchr7~126806039 intergenic "CPSF6," "-," chr12~chr7 69656342 126806039 9 +- 2.043192 9 0 9 9 26 TCGA-DX-A6BH-01A-12R-A30C-07 CTDSP1~RP5-1116C7.1 fusion "CTDSP1," "RP5-1116C7.1," chr2~chr1 219267128 172113577 4 +- 0.693147 4 0 4 4 8 TCGA-DX-A6BH-01A-12R-A30C-07 DLD~Nchr7~124340962 intergenic "DLD," "-," chr7~chr7 107545949 124340962 11 +- 2.271869 8 5 3 8 24 TCGA-DX-A6BH-01A-12R-A30C-07 DLD~Nchr7~124342619 intergenic "DLD," "-," chr7~chr7 107545949 124342619 344 +- 3.225094 327 215 112 327 996 TCGA-DX-A6BH-01A-12R-A30C-07 DLD~SHPRH fusion "DLD," "SHPRH," chr7~chr6 107542838 146185627 14 +- 1.376055 11 5 6 11 34 TCGA-DX-A6BH-01A-12R-A30C-07 DNM3~Nchr16~13336247 intergenic "DNM3," "-," chr1~chr16 172222822 13336247 5 ++ 1.332179 5 2 3 5 12 TCGA-DX-A6BH-01A-12R-A30C-07 DNM3~Nchr16~13352190 intergenic "DNM3," "-," chr1~chr16 172222822 13352190 3 ++ 1.098612 2 0 2 2 10 TCGA-DX-A6BH-01A-12R-A30C-07 DNM3~SHISA9 fusion "DNM3," "SHISA9," chr1~chr16 172224811 13328887 12 ++ 2.094729 11 8 3 11 38 TCGA-DX-A6BH-01A-12R-A30C-07 DNM3~SHISA9 fusion "DNM3," "SHISA9," chr1~chr16 172224776 13328887 5 ++ 0.673012 5 5 0 5 34 TCGA-DX-A6BH-01A-12R-A30C-07 DNM3~SHISA9 fusion "DNM3," "SHISA9," chr1~chr16 172224556 13328887 3 ++ 1.098612 3 2 1 3 8 TCGA-DX-A6BH-01A-12R-A30C-07 DNM3~SHISA9 fusion "DNM3," "SHISA9," chr1~chr16 172222822 13328887 9 ++ 1.889159 8 3 5 8 32 TCGA-DX-A6BH-01A-12R-A30C-07 FOXP2~AC009784.3 fusion "FOXP2," "AC009784.3," chr7~chr7 113726666 136013730 32 ++ 2.826529 18 4 14 18 48 TCGA-DX-A6BH-01A-12R-A30C-07 FOXP2~Nchr6~145705233 intergenic "FOXP2," "-," chr7~chr6 113803143 145705233 3 +- 1.098612 3 1 2 3 22 TCGA-DX-A6BH-01A-12R-A30C-07 FOXP2~Nchr7~124793666 intergenic "FOXP2," "-," chr7~chr7 113726666 124793666 110 +- 3.112833 108 45 63 108 214 TCGA-DX-A6BH-01A-12R-A30C-07 FRS2~AHCYL2 fusion "FRS2," "AHCYL2," chr12~chr7 69967865 129019482 13 ++ 1.991509 13 5 8 13 26 TCGA-DX-A6BH-01A-12R-A30C-07 FRS2~AKAP12 fusion "FRS2," "AKAP12," chr12~chr6 69925836 151626882 102 ++ 3.155588 78 26 49 78 144 TCGA-DX-A6BH-01A-12R-A30C-07 FRS2~AKAP12 fusion "FRS2," "AKAP12," chr12~chr6 69931763 151626882 5 ++ 1.609438 4 2 2 4 164 TCGA-DX-A6BH-01A-12R-A30C-07 FRS2~CNOT2 fusion "FRS2," "CNOT2," chr12~chr12 69925836 70723203 12 ++ 1.632631 11 6 5 11 32 TCGA-DX-A6BH-01A-12R-A30C-07 FRS2~CNOT2 fusion "FRS2," "CNOT2," chr12~chr12 69925836 70726547 7 ++ 1.549826 6 2 4 6 10 TCGA-DX-A6BH-01A-12R-A30C-07 FRS2~CNOT2 fusion "FRS2," "CNOT2," chr12~chr12 69925836 70729218 4 ++ 1.386294 3 1 2 3 6 TCGA-DX-A6BH-01A-12R-A30C-07 FRS2~Nchr12~70549257 intergenic "FRS2," "-," chr12~chr12 69925836 70549257 5 ++ 1.332179 2 1 1 2 38 TCGA-DX-A6BH-01A-12R-A30C-07 FRS2~RFWD2 fusion "FRS2," "RFWD2," chr12~chr1 69864310 175996819 15 +- 1.93381 15 4 11 15 376 TCGA-DX-A6BH-01A-12R-A30C-07 FRS2~RFWD2 fusion "FRS2," "RFWD2," chr12~chr1 69864310 175996824 98 +- 3.14047 92 50 42 92 394 TCGA-DX-A6BH-01A-12R-A30C-07 GPR115~UTRN fusion "GPR115," "UTRN," chr6~chr6 47666530 144999542 4 ++ 1.039721 3 0 3 3 10 TCGA-DX-A6BH-01A-12R-A30C-07 GS1-410F4.4~Nchr6~82767722 intergenic "GS1-410F4.4," "-," chr12~chr6 68323167 82767722 5 +- 1.332179 1 1 0 1 20 TCGA-DX-A6BH-01A-12R-A30C-07 GS1-410F4.4~Nchr6~82781962 intergenic "GS1-410F4.4," "-," chr12~chr6 68323167 82781962 6 +- 1.56071 5 3 2 5 30 TCGA-DX-A6BH-01A-12R-A30C-07 KIAA1244~MED20 fusion "KIAA1244," "MED20," chr6~chr6 138564131 41877260 4 +- 1.039721 4 2 2 4 4 TCGA-DX-A6BH-01A-12R-A30C-07 KIAA1244~RFWD2 fusion "KIAA1244," "RFWD2," chr6~chr1 138564131 176145143 4 +- 1.039721 4 1 3 4 12 TCGA-DX-A6BH-01A-12R-A30C-07 KLHDC10~Nchr12~70549257 intergenic "KLHDC10," "-," chr7~chr12 129769416 70549257 25 ++ 2.300611 24 9 15 24 60 TCGA-DX-A6BH-01A-12R-A30C-07 LAMB1~Nchr1~169703264 intergenic "LAMB1," "-," chr7~chr1 107603350 169703264 139 -- 2.682688 135 91 44 135 266 TCGA-DX-A6BH-01A-12R-A30C-07 MKL2~Nchr7~117566876 intergenic "MKL2," "-," chr16~chr7 14234617 117566876 22 +- 2.476354 16 13 3 16 12 TCGA-DX-A6BH-01A-12R-A30C-07 MTHFD1L~Nchr1~175801334 intergenic "MTHFD1L," "-," chr6~chr1 151270269 175801334 5 +- 1.332179 4 3 1 4 10 TCGA-DX-A6BH-01A-12R-A30C-07 NHSL1~Nchr6~144457609 intergenic "NHSL1," "-," chr6~chr6 138866760 144457609 6 -+ 1.791759 6 0 6 6 22 TCGA-DX-A6BH-01A-12R-A30C-07 NHSL1~Nchr6~151393916 intergenic "NHSL1," "-," chr6~chr6 138769358 151393916 3 -- 0.636514 3 2 1 3 14 TCGA-DX-A6BH-01A-12R-A30C-07 NHSL1~RP11-379B8.1 fusion "NHSL1," "RP11-379B8.1," chr6~chr6 139013613 82555626 3 -- 1.098612 3 3 0 3 12 TCGA-DX-A6BH-01A-12R-A30C-07 NHSL1~RP11-390P2.4 fusion "NHSL1," "RP11-390P2.4," chr6~chr6 138866760 139017734 11 -+ 1.414279 9 2 7 9 14 TCGA-DX-A6BH-01A-12R-A30C-07 NHSL1~UTRN fusion "NHSL1," "UTRN," chr6~chr6 138794443 144724259 17 -+ 1.956187 3 3 0 3 10 TCGA-DX-A6BH-01A-12R-A30C-07 Nchr12~58135010~TSPAN31 intergenic "-," "TSPAN31,CDK4," chr12~chr12 58135010 58142987 3 -+ 1.098612 1 0 1 1 216 TCGA-DX-A6BH-01A-12R-A30C-07 Nchr12~58287523~Nchr6~144534368 intergenic "-," "-," chr12~chr6 58287523 144534368 5 -- 1.332179 5 1 4 5 8 TCGA-DX-A6BH-01A-12R-A30C-07 Nchr12~69832983~XRCC6BP1 intergenic "-," "XRCC6BP1," chr12~chr12 69832983 58339411 5 -+ 1.609438 3 3 0 3 12 TCGA-DX-A6BH-01A-12R-A30C-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 6 ++ 0.867563 6 5 1 6 2 TCGA-DX-A6BH-01A-12R-A30C-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 2 -- 0.693147 2 0 2 2 2 TCGA-DX-A6BH-01A-12R-A30C-07 Nchr6~134089969~Nchr6~133889386 intergenic "-," "-," chr6~chr6 134089969 133889386 22 -- 2.271869 4 1 3 4 8 TCGA-DX-A6BH-01A-12R-A30C-07 Nchr6~143267081~Nchr1~170776745 intergenic "-," "-," chr6~chr1 143267081 170776745 9 -- 1.889159 9 4 5 9 4 TCGA-DX-A6BH-01A-12R-A30C-07 Nchr6~143267081~Nchr1~170833827 intergenic "-," "-," chr6~chr1 143267081 170833827 6 -- 1.329661 5 4 1 5 18 TCGA-DX-A6BH-01A-12R-A30C-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 8 ++ 1.494175 7 7 0 7 10 TCGA-DX-A6BH-01A-12R-A30C-07 Nchr6~68066252~RP11-440G9.1 intergenic "-," "RP11-440G9.1," chr6~chr6 68066252 142855922 8 ++ 0.900256 8 4 4 8 8 TCGA-DX-A6BH-01A-12R-A30C-07 Nchr6~82767656~FRS2 intergenic "-," "FRS2," chr6~chr12 82767656 69966050 3 -- 0.636514 2 2 0 2 6 TCGA-DX-A6BH-01A-12R-A30C-07 Nchr6~82767656~FRS2 intergenic "-," "FRS2," chr6~chr12 82767656 69966296 4 -- 1.039721 4 4 0 4 8 TCGA-DX-A6BH-01A-12R-A30C-07 Nchr6~82767656~RP11-379B8.1 intergenic "-," "RP11-379B8.1," chr6~chr6 82767656 82555626 186 -- 3.256334 107 93 7 107 168 TCGA-DX-A6BH-01A-12R-A30C-07 Nchr6~82767656~RP11-406O16.1 intergenic "-," "RP11-406O16.1," chr6~chr6 82767656 68967303 3 -+ 0.636514 2 2 0 2 10 TCGA-DX-A6BH-01A-12R-A30C-07 Nchr6~82767656~RP11-81H14.2 intergenic "-," "RP11-81H14.2," chr6~chr12 82767656 68727444 10 -- 2.025326 3 3 0 3 8 TCGA-DX-A6BH-01A-12R-A30C-07 Nchr7~114531247~C12orf28 intergenic "-," "C12orf28," chr7~chr12 114531247 70351602 22 ++ 2.602381 21 10 11 21 32 TCGA-DX-A6BH-01A-12R-A30C-07 Nchr7~114531247~C12orf28 intergenic "-," "C12orf28," chr7~chr12 114531247 70351610 9 ++ 2.043192 8 8 0 8 30 TCGA-DX-A6BH-01A-12R-A30C-07 Nchr7~115064852~GRM1 intergenic "-," "GRM1," chr7~chr6 115064852 146401501 7 +- 1.747868 6 3 3 6 16 TCGA-DX-A6BH-01A-12R-A30C-07 Nchr7~121784550~Nchr7~109248379 intergenic "-," "-," chr7~chr7 121784550 109248379 2 +- 0.693147 2 2 0 2 18 TCGA-DX-A6BH-01A-12R-A30C-07 Nchr7~121786112~Nchr7~109248379 intergenic "-," "-," chr7~chr7 121786112 109248379 4 +- 1.039721 4 3 1 4 16 TCGA-DX-A6BH-01A-12R-A30C-07 Nchr7~124783517~AC009784.3 intergenic "-," "AC009784.3," chr7~chr7 124783517 136013730 6 -+ 1.329661 6 2 4 6 22 TCGA-DX-A6BH-01A-12R-A30C-07 NchrX~36982319~NchrX~36698022 intergenic "-," "-," chrX~chrX 36982319 36698022 2 -- 0.693147 1 0 1 1 36 TCGA-DX-A6BH-01A-12R-A30C-07 PDE3A~OS9 fusion "PDE3A," "OS9," chr12~chr12 20704505 58112038 2 ++ 0.693147 2 1 1 2 8 TCGA-DX-A6BH-01A-12R-A30C-07 PLAGL1~C12orf28 fusion "PLAGL1," "C12orf28," chr6~chr12 144281610 70349143 8 -+ 1.494175 5 0 5 5 66 TCGA-DX-A6BH-01A-12R-A30C-07 PLAGL1~C12orf28 fusion "PLAGL1," "C12orf28," chr6~chr12 144281606 70349143 41 -+ 2.650287 12 2 10 12 64 TCGA-DX-A6BH-01A-12R-A30C-07 PLAGL1~CPM fusion "PLAGL1," "CPM," chr6~chr12 144281606 69351458 15 -- 1.968693 13 5 8 13 40 TCGA-DX-A6BH-01A-12R-A30C-07 PLAGL1~Nchr12~69371801 intergenic "PLAGL1," "-," chr6~chr12 144285924 69371801 3 -- 0.636514 3 1 2 3 116 TCGA-DX-A6BH-01A-12R-A30C-07 PLAGL1~Nchr12~69371801 intergenic "PLAGL1," "-," chr6~chr12 144281610 69371801 17 -- 2.033662 17 5 12 17 266 TCGA-DX-A6BH-01A-12R-A30C-07 PLAGL1~Nchr12~69371801 intergenic "PLAGL1," "-," chr6~chr12 144281606 69371801 100 -- 3.096974 94 39 55 94 296 TCGA-DX-A6BH-01A-12R-A30C-07 PLEKHG1~RP11-114H23.1 fusion "PLEKHG1," "RP11-114H23.1," chr6~chr12 151153341 76025094 9 +- 1.83102 7 5 2 7 14 TCGA-DX-A6BH-01A-12R-A30C-07 PLEKHG1~RP11-114H23.2 fusion "PLEKHG1," "RP11-114H23.2," chr6~chr12 151153341 76088755 7 +- 1.475076 7 4 3 7 18 TCGA-DX-A6BH-01A-12R-A30C-07 POU2F1~Nchr6~138097284 intergenic "POU2F1," "-," chr1~chr6 167272811 138097284 4 ++ 1.039721 3 1 2 3 18 TCGA-DX-A6BH-01A-12R-A30C-07 POU2F1~Nchr6~138097284 intergenic "POU2F1," "-," chr1~chr6 167190195 138097284 16 ++ 2.313154 15 0 14 15 42 TCGA-DX-A6BH-01A-12R-A30C-07 POU2F1~Nchr6~138138645 intergenic "POU2F1," "-," chr1~chr6 167190195 138138645 7 ++ 1.732868 8 0 7 8 104 TCGA-DX-A6BH-01A-12R-A30C-07 POU2F1~Nchr6~138141392 intergenic "POU2F1," "-," chr1~chr6 167190195 138141392 9 ++ 1.889159 7 0 7 7 54 TCGA-DX-A6BH-01A-12R-A30C-07 POU2F1~Nchr6~138174636 intergenic "POU2F1," "-," chr1~chr6 167190195 138174636 9 ++ 1.427061 5 0 5 5 42 TCGA-DX-A6BH-01A-12R-A30C-07 POU2F1~Nchr6~138177507 intergenic "POU2F1," "-," chr1~chr6 167190195 138177507 6 ++ 1.277034 5 0 4 5 48 TCGA-DX-A6BH-01A-12R-A30C-07 POU2F1~Nchr6~138181562 intergenic "POU2F1," "-," chr1~chr6 167272811 138181562 7 ++ 1.747868 6 1 5 6 4 TCGA-DX-A6BH-01A-12R-A30C-07 POU2F1~Nchr6~138181746 intergenic "POU2F1," "-," chr1~chr6 167190195 138181746 4 ++ 1.386294 4 0 4 4 14 TCGA-DX-A6BH-01A-12R-A30C-07 POU2F1~Nchr6~138187997 intergenic "POU2F1," "-," chr1~chr6 167190195 138187997 7 ++ 1.549826 7 0 7 7 18 TCGA-DX-A6BH-01A-12R-A30C-07 POU2F1~UTRN fusion "POU2F1," "UTRN," chr1~chr6 167190195 144765417 5 ++ 1.332179 5 0 5 5 10 TCGA-DX-A6BH-01A-12R-A30C-07 PRRC2C~Nchr6~138691625 intergenic "PRRC2C," "-," chr1~chr6 171454874 138691625 7 +- 1.747868 7 6 1 7 14 TCGA-DX-A6BH-01A-12R-A30C-07 REPS1~KCNMB4 fusion "REPS1," "KCNMB4," chr6~chr12 139241352 70793989 4 -+ 1.039721 4 3 1 4 14 TCGA-DX-A6BH-01A-12R-A30C-07 REPS1~Nchr7~122858205 intergenic "REPS1," "-," chr6~chr7 139228632 122858205 15 -- 2.153532 15 11 4 15 28 TCGA-DX-A6BH-01A-12R-A30C-07 RFWD2~GRM1 fusion "RFWD2," "GRM1," chr1~chr6 176153769 146673386 19 -+ 2.333197 19 4 15 19 48 TCGA-DX-A6BH-01A-12R-A30C-07 RP1-45C12.1~MYOC fusion "RP1-45C12.1," "MYOC," chr1~chr1 171137243 171607862 4 -- 0.693147 1 1 0 1 14 TCGA-DX-A6BH-01A-12R-A30C-07 RP11-114H23.1~KCNMB4 fusion "RP11-114H23.1," "KCNMB4," chr12~chr12 75969129 70793989 12 -+ 1.748155 11 4 7 11 10 TCGA-DX-A6BH-01A-12R-A30C-07 RP11-406O16.1~Nchr6~82767722 intergenic "RP11-406O16.1," "-," chr6~chr6 68950326 82767722 172 +- 3.227171 45 34 9 45 92 TCGA-DX-A6BH-01A-12R-A30C-07 RP11-406O16.1~Nchr6~82767934 intergenic "RP11-406O16.1," "-," chr6~chr6 68950326 82767934 7 +- 1.277034 5 0 5 5 120 TCGA-DX-A6BH-01A-12R-A30C-07 RP11-406O16.1~Nchr6~82769396 intergenic "RP11-406O16.1," "-," chr6~chr6 68950326 82769396 14 +- 2.242973 10 5 5 10 152 TCGA-DX-A6BH-01A-12R-A30C-07 RP11-406O16.1~Nchr6~82781962 intergenic "RP11-406O16.1," "-," chr6~chr6 68950326 82781962 29 +- 2.623491 21 11 10 21 168 TCGA-DX-A6BH-01A-12R-A30C-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 2 ++ 0.693147 2 2 0 2 6 TCGA-DX-A6BH-01A-12R-A30C-07 SRI~PIP4K2C fusion "SRI," "PIP4K2C," chr7~chr12 87839866 57987808 2 -+ 0.693147 1 0 1 1 1026 TCGA-DX-A6BH-01A-12R-A30C-07 SRI~PIP4K2C fusion "SRI," "PIP4K2C," chr7~chr12 87840197 57987808 488 -+ 3.268395 450 266 184 450 1060 TCGA-DX-A6BH-01A-12R-A30C-07 SYNE1~Nchr12~68730265 intergenic "SYNE1," "-," chr6~chr12 152660376 68730265 89 -+ 2.822209 87 29 58 87 152 TCGA-DX-A6BH-01A-12R-A30C-07 SYNE1~Nchr12~68758809 intergenic "SYNE1," "-," chr6~chr12 152660376 68758809 12 -+ 1.473502 11 6 5 11 28 TCGA-DX-A6BH-01A-12R-A30C-07 TNFAIP3~IL26 fusion "TNFAIP3," "IL26," chr6~chr12 138192659 68595863 44 +- 2.877249 44 18 25 44 90 TCGA-DX-A6BH-01A-12R-A30C-07 TRERF1~GPR111 fusion "TRERF1," "GPR111," chr6~chr6 42418915 47641127 28 -+ 2.651193 27 14 13 27 40 TCGA-DX-A6BH-01A-12R-A30C-07 TRERF1~Nchr12~70015882 intergenic "TRERF1," "-," chr6~chr12 42418915 70015882 7 -+ 1.747868 7 5 2 7 24 TCGA-DX-A6BH-01A-12R-A30C-07 TRERF1~UTRN fusion "TRERF1," "UTRN," chr6~chr6 42418915 144808684 2 -+ 0.693147 2 1 1 2 6 TCGA-DX-A6BH-01A-12R-A30C-07 UBE2H~Nchr1~165199965 intergenic "UBE2H," "-," chr7~chr1 129592343 165199965 7 -- 1.747868 7 4 3 7 20 TCGA-DX-A6BH-01A-12R-A30C-07 USP49~Nchr12~75039310 intergenic "USP49," "-," chr6~chr12 41859532 75039310 8 -+ 1.494175 8 3 5 8 10 TCGA-DX-A6BH-01A-12R-A30C-07 UTRN~LAMB4 fusion "UTRN," "LAMB4," chr6~chr7 144769905 107678040 14 +- 2.143952 14 5 9 14 26 TCGA-DX-A6BH-01A-12R-A30C-07 UTRN~Nchr6~138470793 intergenic "UTRN," "-," chr6~chr6 144898424 138470793 4 ++ 1.386294 3 2 1 3 20 TCGA-DX-A6BH-01A-12R-A30C-07 UTRN~Nchr6~145311987 intergenic "UTRN," "-," chr6~chr6 145095500 145311987 39 ++ 2.691893 20 0 20 20 10 TCGA-DX-A6BH-01A-12R-A30C-07 UTRN~Nchr7~115057819 intergenic "UTRN," "-," chr6~chr7 144613043 115057819 6 ++ 1.56071 6 4 2 6 40 TCGA-DX-A6BH-01A-12R-A30C-07 UTRN~Nchr7~115064759 intergenic "UTRN," "-," chr6~chr7 144613043 115064759 9 ++ 1.676988 7 7 0 7 14 TCGA-DX-A6BH-01A-12R-A30C-07 UTRN~RP1-292B18.4 fusion "UTRN," "RP1-292B18.4," chr6~chr6 144898424 151472273 5 +- 1.609438 5 2 3 5 14 TCGA-IE-A6BZ-01A-11R-A30C-07 C12orf62~FBN1 fusion "C12orf62,AC074032.1," "FBN1," chr12~chr15 50506084 48762953 105 +- 3.074442 104 18 86 104 276 TCGA-IE-A6BZ-01A-11R-A30C-07 C12orf62~FBN1 fusion "C12orf62," "FBN1," chr12~chr15 50506280 48762953 2 +- 0.693147 2 1 1 2 132 TCGA-IE-A6BZ-01A-11R-A30C-07 CDC42SE2~Nchr7~159028604 intergenic "CDC42SE2," "-," chr5~chr7 130651837 159028604 16 +- 2.009709 14 6 8 14 46 TCGA-IE-A6BZ-01A-11R-A30C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266531 94034039 5 -+ 1.332179 2 1 1 2 6 TCGA-IE-A6BZ-01A-11R-A30C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94042395 4 -+ 1.386294 4 3 1 4 16 TCGA-IE-A6BZ-01A-11R-A30C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273675 94047856 6 -+ 1.242453 6 2 4 6 6 TCGA-IE-A6BZ-01A-11R-A30C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271304 94055762 2 -+ 0.693147 2 1 1 2 2 TCGA-IE-A6BZ-01A-11R-A30C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189867077 48266636 5 +- 1.332179 4 3 1 4 2 TCGA-IE-A6BZ-01A-11R-A30C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189868155 48273026 2 +- 0.693147 2 1 1 2 4 TCGA-IE-A6BZ-01A-11R-A30C-07 COL6A2~COL1A1 fusion "COL6A2," "COL1A1," chr21~chr17 47544583 48264483 3 +- 0.636514 3 1 2 3 4 TCGA-IE-A6BZ-01A-11R-A30C-07 DUSP22~BEND6 fusion "DUSP22," "BEND6," chr6~chr6 311962 56828919 7 ++ 1.747868 7 7 0 7 100 TCGA-IE-A6BZ-01A-11R-A30C-07 DUSP22~BEND6 fusion "DUSP22," "BEND6," chr6~chr6 311962 56846509 17 ++ 2.068513 15 12 3 15 100 TCGA-IE-A6BZ-01A-11R-A30C-07 DUSP22~BEND6 fusion "DUSP22," "BEND6," chr6~chr6 311962 56857176 2 ++ 0.693147 2 0 2 2 12 TCGA-IE-A6BZ-01A-11R-A30C-07 FGF20~FGF16 fusion "FGF20," "FGF16," chr8~chrX 16859256 76709648 19 -+ 1.600867 19 0 19 19 10 TCGA-IE-A6BZ-01A-11R-A30C-07 FNIP1~Nchr7~159028604 intergenic "FNIP1," "-," chr5~chr7 131034610 159028604 14 -- 2.061113 15 9 5 15 64 TCGA-IE-A6BZ-01A-11R-A30C-07 HLA-E~Nchr6~24033763 intergenic "HLA-E," "-," chr6~chr6 30458292 24033763 7 ++ 1.94591 5 3 2 5 24 TCGA-IE-A6BZ-01A-11R-A30C-07 KHDRBS3~Nchr8~70768321 intergenic "KHDRBS3," "-," chr8~chr8 136569830 70768321 13 +- 1.778233 13 4 9 13 80 TCGA-IE-A6BZ-01A-11R-A30C-07 LDLR~TNPO2 fusion "LDLR," "TNPO2," chr19~chr19 11234020 12817609 3 +- 1.098612 3 0 3 3 24 TCGA-IE-A6BZ-01A-11R-A30C-07 METTL16~FXR2 fusion "METTL16," "FXR2," chr17~chr17 2405498 7509467 8 -- 1.732868 7 2 5 7 40 TCGA-IE-A6BZ-01A-11R-A30C-07 NAV1~TIMM17A fusion "NAV1," "TIMM17A," chr1~chr1 201687883 201926409 22 ++ 2.500138 22 11 11 22 88 TCGA-IE-A6BZ-01A-11R-A30C-07 NAV1~TIMM17A fusion "NAV1," "TIMM17A," chr1~chr1 201709204 201926409 4 ++ 1.386294 4 3 1 4 8 TCGA-IE-A6BZ-01A-11R-A30C-07 NOL7~Nchr6~51456523 intergenic "NOL7," "-," chr6~chr6 13621088 51456523 9 ++ 1.735126 9 2 7 9 32 TCGA-IE-A6BZ-01A-11R-A30C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 31 -+ 2.105248 10 0 10 10 4 TCGA-IE-A6BZ-01A-11R-A30C-07 Nchr14~90085372~FOXN3 intergenic "-," "FOXN3," chr14~chr14 90085372 89878834 5 -- 1.332179 5 5 0 5 10 TCGA-IE-A6BZ-01A-11R-A30C-07 Nchr17~40154537~CDH4 intergenic "-," "CDH4," chr17~chr20 40154537 59852619 20 -- 2.484367 20 12 8 20 64 TCGA-IE-A6BZ-01A-11R-A30C-07 Nchr18~20500725~Nchr18~20284883 intergenic "-," "-," chr18~chr18 20500725 20284883 4 -- 1.039721 4 1 3 4 8 TCGA-IE-A6BZ-01A-11R-A30C-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 4 -- 1.386294 1 1 0 1 20 TCGA-IE-A6BZ-01A-11R-A30C-07 Nchr18~77755286~Nchr18~76593940 intergenic "-," "-," chr18~chr18 77755286 76593940 2 -+ 0.693147 1 1 0 1 24 TCGA-IE-A6BZ-01A-11R-A30C-07 Nchr18~77793851~Nchr18~76593940 intergenic "-," "-," chr18~chr18 77793851 76593940 4 -+ 1.039721 3 3 0 3 18 TCGA-IE-A6BZ-01A-11R-A30C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 31 -+ 2.748341 31 16 14 31 226 TCGA-IE-A6BZ-01A-11R-A30C-07 Nchr1~201526339~Nchr1~200180839 intergenic "-," "-," chr1~chr1 201526339 200180839 2 -+ 0.693147 1 1 0 1 6 TCGA-IE-A6BZ-01A-11R-A30C-07 Nchr4~138228524~RP11-138I17.1 intergenic "-," "RP11-138I17.1," chr4~chr4 138228524 138010754 3 -- 0.636514 3 0 3 3 12 TCGA-IE-A6BZ-01A-11R-A30C-07 Nchr6~8558876~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8558876 8784424 9 ++ 1.735126 7 2 5 7 4 TCGA-IE-A6BZ-01A-11R-A30C-07 Nchr9~17906920~Nchr9~18163860 intergenic "-," "-," chr9~chr9 17906920 18163860 11 ++ 1.767761 5 3 2 5 30 TCGA-IE-A6BZ-01A-11R-A30C-07 PDZRN4~Nchr12~43980815 intergenic "PDZRN4," "-," chr12~chr12 41587990 43980815 4 ++ 1.386294 4 2 2 4 8 TCGA-IE-A6BZ-01A-11R-A30C-07 PDZRN4~PUS7L fusion "PDZRN4," "PUS7L,RP11-210N13.1," chr12~chr12 41587990 44132149 8 ++ 0.735622 8 1 7 8 6 TCGA-IE-A6BZ-01A-11R-A30C-07 PTK7~BMP5 fusion "PTK7," "BMP5," chr6~chr6 43114436 55739472 2 +- 0.693147 2 2 0 2 2 TCGA-IE-A6BZ-01A-11R-A30C-07 RBPMS2~FAM96A fusion "RBPMS2," "FAM96A," chr15~chr15 65040618 64367736 65 -- 2.887604 60 30 30 60 276 TCGA-IE-A6BZ-01A-11R-A30C-07 RP11-90L20.3~Nchr1~201526424 intergenic "RP11-90L20.3,IPO9," "-," chr1~chr1 201798500 201526424 5 +- 1.05492 1 0 1 1 10 TCGA-IE-A6BZ-01A-11R-A30C-07 SIN3A~Nchr15~69921234 intergenic "SIN3A," "-," chr15~chr15 75714988 69921234 7 -- 1.549826 7 4 3 7 28 TCGA-IE-A6BZ-01A-11R-A30C-07 TAF2~CLVS1 fusion "TAF2," "CLVS1," chr8~chr8 120843917 62412014 24 -+ 2.809783 25 16 8 25 112 TCGA-IE-A6BZ-01A-11R-A30C-07 VEGFA~NRD1 fusion "VEGFA," "NRD1," chr6~chr1 43739049 52306186 36 +- 2.760313 35 26 9 35 162 TCGA-IE-A6BZ-01A-11R-A30C-07 WNK1~Nchr12~18999037 intergenic "WNK1," "-," chr12~chr12 939326 18999037 6 +- 1.791759 6 5 1 6 14 TCGA-DX-A48U-01A-11R-A30C-07 ANKRD42~Nchr11~83447758 intergenic "ANKRD42," "-," chr11~chr11 82947551 83447758 4 ++ 1.039721 2 1 1 2 6 TCGA-DX-A48U-01A-11R-A30C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 30 -- 2.008418 30 29 1 30 132 TCGA-DX-A48U-01A-11R-A30C-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 80 -- 2.250371 57 13 44 57 10 TCGA-DX-A48U-01A-11R-A30C-07 LRRC7~Nchr1~70027223 intergenic "LRRC7," "-," chr1~chr1 70144161 70027223 2 ++ 0.693147 1 1 0 1 72 TCGA-DX-A48U-01A-11R-A30C-07 MIPOL1~TRIM38 fusion "MIPOL1," "TRIM38," chr14~chr6 37892154 25972097 3 ++ 0.636514 1 0 1 1 6 TCGA-DX-A48U-01A-11R-A30C-07 NLGN4Y~SHISA6 fusion "NLGN4Y," "SHISA6," chrY~chr17 16835149 11459057 4 ++ 1.386294 4 4 0 4 8 TCGA-DX-A48U-01A-11R-A30C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 64 -+ 2.418689 27 0 26 27 48 TCGA-DX-A48U-01A-11R-A30C-07 Nchr12~95267416~TMCC3 intergenic "-," "TMCC3," chr12~chr12 95267416 94976314 8 -- 1.667462 8 8 0 8 2 TCGA-DX-A48U-01A-11R-A30C-07 Nchr16~85404884~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85404884 85667520 3 ++ 0.636514 3 3 0 3 6 TCGA-DX-A48U-01A-11R-A30C-07 Nchr16~85404884~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85404884 85682158 7 ++ 1.747868 6 2 4 6 14 TCGA-DX-A48U-01A-11R-A30C-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 2 ++ 0.693147 2 0 2 2 38 TCGA-DX-A48U-01A-11R-A30C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 29 -+ 2.691724 27 11 16 27 290 TCGA-DX-A48U-01A-11R-A30C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145013721 2 -+ 0.500402 5 2 0 5 40 TCGA-DX-A48U-01A-11R-A30C-07 Nchr5~163136438~TPM2 intergenic "-," "TPM2," chr5~chr9 163136438 35685288 2 +- 0.693147 2 0 2 2 84 TCGA-DX-A48U-01A-11R-A30C-07 Nchr5~163136438~TPM2 intergenic "-," "TPM2," chr5~chr9 163136438 35685472 2 +- 0.693147 2 0 2 2 126 TCGA-DX-A48U-01A-11R-A30C-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 107 ++ 2.764401 1 0 1 1 4 TCGA-DX-A48U-01A-11R-A30C-07 Nchr9~29212920~Nchr9~28947912 intergenic "-," "-," chr9~chr9 29212920 28947912 10 -- 1.609438 8 0 8 8 8 TCGA-DX-A48U-01A-11R-A30C-07 PABPC4~MACF1 fusion "PABPC4," "MACF1," chr1~chr1 40034474 39916724 11 -+ 1.366711 10 4 6 10 18 TCGA-DX-A48U-01A-11R-A30C-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 3 ++ 1.098612 3 1 2 3 6 TCGA-DX-A48U-01A-11R-A30C-07 SVIL~Nchr10~31006467 intergenic "SVIL," "-," chr10~chr10 29746871 31006467 4 -- 1.039721 4 3 1 4 6 TCGA-DX-A48U-01A-11R-A30C-07 TAGLN~DES fusion "TAGLN," "DES," chr11~chr2 117074969 220284817 2 ++ 0.693147 2 1 1 2 2 TCGA-DX-A48U-01A-11R-A30C-07 TPM1~TPM2 fusion "TPM1," "TPM2," chr15~chr9 63353987 35684499 3 +- 1.098612 2 1 1 2 2 TCGA-DX-A48U-01A-11R-A30C-07 TPM2~ACTG1 fusion "TPM2," "ACTG1," chr9~chr17 35685061 79478652 3 -- 0.636514 3 2 1 3 6 TCGA-DX-A48R-01A-11R-A30C-07 AC090579.1~Nchr8~111009023 intergenic "AC090579.1," "-," chr8~chr8 107696587 111009023 2 +- 0.693147 2 2 0 2 8 TCGA-DX-A48R-01A-11R-A30C-07 AC090579.1~Nchr8~111044926 intergenic "AC090579.1," "-," chr8~chr8 107696587 111044926 3 +- 1.098612 3 1 2 3 16 TCGA-DX-A48R-01A-11R-A30C-07 AC090579.1~Nchr8~111056156 intergenic "AC090579.1," "-," chr8~chr8 107696587 111056156 6 +- 1.56071 6 5 1 6 14 TCGA-DX-A48R-01A-11R-A30C-07 BAG4~Nchr13~81627450 intergenic "BAG4," "-," chr8~chr13 38034657 81627450 9 +- 1.83102 9 3 6 9 18 TCGA-DX-A48R-01A-11R-A30C-07 C10orf118~Nchr10~114036287 intergenic "C10orf118," "-," chr10~chr10 115932900 114036287 9 -+ 2.043192 7 4 3 7 76 TCGA-DX-A48R-01A-11R-A30C-07 C10orf118~Nchr10~114036287 intergenic "C10orf118," "-," chr10~chr10 115933774 114036287 16 -+ 2.252728 16 5 11 16 60 TCGA-DX-A48R-01A-11R-A30C-07 C10orf118~Nchr10~114043406 intergenic "C10orf118," "-," chr10~chr10 115932900 114043406 3 -+ 1.098612 3 0 3 3 28 TCGA-DX-A48R-01A-11R-A30C-07 C10orf118~Nchr10~114043406 intergenic "C10orf118," "-," chr10~chr10 115933774 114043406 6 -+ 1.242453 6 1 5 6 22 TCGA-DX-A48R-01A-11R-A30C-07 CNBP~Nchr18~5050206 intergenic "CNBP," "-," chr3~chr18 128902619 5050206 5 -- 1.332179 5 3 2 5 22 TCGA-DX-A48R-01A-11R-A30C-07 DIP2C~Nchr10~26005674 intergenic "DIP2C," "-," chr10~chr10 735434 26005674 2 -+ 0.693147 2 1 1 2 6 TCGA-DX-A48R-01A-11R-A30C-07 EDF1~Nchr9~139760751 intergenic "EDF1," "-," chr9~chr9 139758307 139760751 2 +- 0.693147 2 0 2 2 26 TCGA-DX-A48R-01A-11R-A30C-07 ELAC2~Nchr17~12999673 intergenic "ELAC2," "-," chr17~chr17 12897004 12999673 155 -- 3.216342 144 88 55 144 536 TCGA-DX-A48R-01A-11R-A30C-07 GAPDH~NchrX~46299827 intergenic "GAPDH," "-," chr12~chrX 6646369 46299827 12 -- 2.022809 1 1 0 1 16 TCGA-DX-A48R-01A-11R-A30C-07 GFRA1~Nchr10~110173004 intergenic "GFRA1," "-," chr10~chr10 118029015 110173004 8 -+ 1.732868 8 3 5 8 20 TCGA-DX-A48R-01A-11R-A30C-07 GFRA1~Nchr10~110176740 intergenic "GFRA1," "-," chr10~chr10 118029015 110176740 2 -+ 0.693147 2 1 1 2 8 TCGA-DX-A48R-01A-11R-A30C-07 GRK5~SUMF1 fusion "GRK5," "SUMF1," chr10~chr3 121191039 4110429 13 +- 1.991509 12 4 8 12 30 TCGA-DX-A48R-01A-11R-A30C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 29 -- 2.225409 27 27 0 27 18 TCGA-DX-A48R-01A-11R-A30C-07 MYL9~ACTB fusion "MYL9," "ACTB," chr20~chr7 35177616 5567754 2 +- 0.693147 2 1 1 2 6 TCGA-DX-A48R-01A-11R-A30C-07 Nchr11~29935930~Nchr11~29664367 intergenic "-," "-," chr11~chr11 29935930 29664367 4 -- 1.386294 3 1 2 3 8 TCGA-DX-A48R-01A-11R-A30C-07 Nchr11~29937384~Nchr11~29706929 intergenic "-," "-," chr11~chr11 29937384 29706929 5 -- 1.609438 3 2 1 3 2 TCGA-DX-A48R-01A-11R-A30C-07 Nchr11~65190712~Nchr11~65190684 intergenic "-," "-," chr11~chr11 65190712 65190684 2 ++ 0.693147 2 2 0 2 8 TCGA-DX-A48R-01A-11R-A30C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 48 -+ 2.208727 24 0 24 24 16 TCGA-DX-A48R-01A-11R-A30C-07 Nchr14~58332441~SLC35F4 intergenic "-," "SLC35F4," chr14~chr14 58332441 58060842 3 -- 0.636514 3 2 1 3 6 TCGA-DX-A48R-01A-11R-A30C-07 Nchr14~58448631~SLC35F4 intergenic "-," "SLC35F4," chr14~chr14 58448631 58060842 4 -- 1.039721 4 3 1 4 10 TCGA-DX-A48R-01A-11R-A30C-07 Nchr15~21916043~NBEA intergenic "-," "NBEA," chr15~chr13 21916043 35683427 5 -+ 1.332179 4 2 2 4 8 TCGA-DX-A48R-01A-11R-A30C-07 Nchr15~55155259~UNC13C intergenic "-," "UNC13C," chr15~chr15 55155259 54908457 3 -- 1.098612 3 2 1 3 2 TCGA-DX-A48R-01A-11R-A30C-07 Nchr17~16343551~Nchr17~16344712 intergenic "-," "-," chr17~chr17 16343551 16344712 2 -+ 1.098612 2 1 0 2 64 TCGA-DX-A48R-01A-11R-A30C-07 Nchr18~37331293~Nchr18~37115579 intergenic "-," "-," chr18~chr18 37331293 37115579 4 -- 1.039721 2 0 2 2 18 TCGA-DX-A48R-01A-11R-A30C-07 Nchr19~1203504~HMGB2 intergenic "-," "HMGB2," chr19~chr4 1203504 174254085 4 -- 1.039721 2 0 2 2 4 TCGA-DX-A48R-01A-11R-A30C-07 Nchr1~10507~METTL4 intergenic "-," "METTL4," chr1~chr18 10507 2567653 2 -- 0.693147 2 0 2 2 10 TCGA-DX-A48R-01A-11R-A30C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 39 -+ 2.725664 38 21 17 38 102 TCGA-DX-A48R-01A-11R-A30C-07 Nchr22~31374557~Nchr22~31374671 intergenic "-," "-," chr22~chr22 31374557 31374671 3 -- 0.636514 3 3 0 3 2 TCGA-DX-A48R-01A-11R-A30C-07 Nchr2~139258325~Nchr2~139057107 intergenic "-," "-," chr2~chr2 139258325 139057107 5 -- 1.05492 1 1 0 1 8 TCGA-DX-A48R-01A-11R-A30C-07 Nchr3~187872040~LPP intergenic "-," "LPP," chr3~chr3 187872040 188123900 6 ++ 1.56071 6 0 6 6 2 TCGA-DX-A48R-01A-11R-A30C-07 Nchr3~27065268~LRRC3B intergenic "-," "LRRC3B," chr3~chr3 27065268 26715443 3 -- 1.098612 3 3 0 3 8 TCGA-DX-A48R-01A-11R-A30C-07 Nchr5~180217347~MGAT1 intergenic "-," "MGAT1," chr5~chr5 180217347 180222334 3 -+ 0.636514 3 3 0 3 2 TCGA-DX-A48R-01A-11R-A30C-07 Nchr5~25910535~MSN intergenic "-," "MSN," chr5~chrX 25910535 64956665 2 -+ 0.693147 1 0 1 1 8 TCGA-DX-A48R-01A-11R-A30C-07 Nchr6~8558876~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8558876 8784424 3 ++ 1.098612 1 0 1 1 12 TCGA-DX-A48R-01A-11R-A30C-07 Nchr7~140912504~Nchr7~141137408 intergenic "-," "-," chr7~chr7 140912504 141137408 10 ++ 2.025326 8 2 6 8 6 TCGA-DX-A48R-01A-11R-A30C-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 34 ++ 2.713456 6 1 5 6 6 TCGA-DX-A48R-01A-11R-A30C-07 Nchr9~10667~AP2S1 intergenic "-," "AP2S1," chr9~chr19 10667 47342835 48 -- 2.914675 41 21 20 41 684 TCGA-DX-A48R-01A-11R-A30C-07 NchrX~73500229~NchrX~73289419 intergenic "-," "-," chrX~chrX 73500229 73289419 2 -- 0.693147 2 1 1 2 2 TCGA-DX-A48R-01A-11R-A30C-07 PPM1G~Nchr2~181737780 intergenic "PPM1G," "-," chr2~chr2 27615738 181737780 3 -- 0.636514 3 0 3 3 58 TCGA-DX-A48R-01A-11R-A30C-07 RP11-123O10.4~GRIP1 fusion "RP11-123O10.4," "GRIP1," chr12~chr12 67462830 66990707 3 -- 1.098612 2 1 1 2 2 TCGA-DX-A48R-01A-11R-A30C-07 RP11-335L9.1~Nchr3~177483365 intergenic "RP11-335L9.1," "-," chr3~chr3 177257281 177483365 4 ++ 1.386294 2 0 2 2 2 TCGA-DX-A48R-01A-11R-A30C-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 5 ++ 1.609438 4 2 2 4 18 TCGA-DX-A48R-01A-11R-A30C-07 STX8~Nchr19~29058545 intergenic "STX8," "-," chr17~chr19 9395146 29058545 304 -+ 3.142096 279 185 94 279 614 TCGA-DX-A48R-01A-11R-A30C-07 UBAC2~Nchr13~95355629 intergenic "UBAC2," "-," chr13~chr13 99896878 95355629 3 ++ 0.636514 3 0 3 3 2 TCGA-DX-A48R-01A-11R-A30C-07 UBAC2~Nchr13~95416662 intergenic "UBAC2," "-," chr13~chr13 99896878 95416662 8 ++ 1.906155 8 7 1 8 24 TCGA-DX-A48P-01A-11R-A30C-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 5 +- 1.332179 5 2 3 5 28 TCGA-DX-A48P-01A-11R-A30C-07 EXT2~Nchr19~32441593 intergenic "EXT2," "-," chr11~chr19 44151688 32441593 10 ++ 1.886697 10 6 4 10 32 TCGA-DX-A48P-01A-11R-A30C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 112 -- 2.498305 112 112 0 112 120 TCGA-DX-A48P-01A-11R-A30C-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 169 -- 2.191564 175 1 166 175 24 TCGA-DX-A48P-01A-11R-A30C-07 NOP56~Nchr12~79952582 intergenic "NOP56,NOP56," "-," chr20~chr12 2637857 79952582 10 ++ 1.609438 6 0 6 6 4 TCGA-DX-A48P-01A-11R-A30C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 107 -+ 2.467207 44 0 43 44 68 TCGA-DX-A48P-01A-11R-A30C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 25 -+ 2.531464 22 13 7 22 226 TCGA-DX-A48P-01A-11R-A30C-07 Nchr2~177065929~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065929 177065788 3 ++ 0.636514 3 0 3 3 46 TCGA-DX-A48P-01A-11R-A30C-07 Nchr6~29902025~HLA-B intergenic "-," "HLA-B," chr6~chr6 29902025 31324034 5 -- 1.05492 2 1 1 2 26 TCGA-DX-A48P-01A-11R-A30C-07 PAIP2~SIL1 fusion "PAIP2," "SIL1,CTB-46B19.2,SIL1," chr5~chr5 138677669 138386735 53 +- 2.451033 53 49 4 53 344 TCGA-DX-A48P-01A-11R-A30C-07 SIL1~PAIP2 fusion "SIL1," "PAIP2," chr5~chr5 138456724 138699448 4 -+ 1.039721 4 4 0 4 24 TCGA-DX-A48P-01A-11R-A30C-07 TP53~AP001596.6 fusion "WRAP53,TP53," "AP001596.6," chr17~chr21 7590695 27843070 7 -+ 1.747868 7 2 5 7 54 TCGA-DX-A48P-01A-11R-A30C-07 TP53~AP001597.1 fusion "WRAP53,TP53," "AP001597.1," chr17~chr21 7590695 27875901 6 -+ 1.329661 4 2 2 4 34 TCGA-DX-A48P-01A-11R-A30C-07 TPM2~ACTG1 fusion "TPM2," "ACTG1," chr9~chr17 35685061 79478652 2 -- 0.693147 2 1 1 2 8 TCGA-DX-A48P-01A-11R-A30C-07 TPM2~Nchr5~163136512 intergenic "TPM2," "-," chr9~chr5 35685277 163136512 2 -- 0.693147 2 0 2 2 40 TCGA-DX-A48P-01A-11R-A30C-07 TPM4~Nchr3~27674690 intergenic "TPM4," "-," chr19~chr3 16186932 27674690 2 -+ 0.693147 1 1 0 1 14 TCGA-DX-A48P-01A-11R-A30C-07 YARS~ANKRD17 fusion "YARS," "ANKRD17," chr1~chr4 33263364 73944607 2 -- 0.693147 2 1 1 2 8 TCGA-DX-A3UF-01A-11R-A30C-07 CLEC2B~Nchr12~47268600 intergenic "CLEC2B," "-," chr12~chr12 10021804 47268600 3 -+ 1.098612 3 0 3 3 64 TCGA-DX-A3UF-01A-11R-A30C-07 CLEC2B~Nchr12~47270358 intergenic "CLEC2B," "-," chr12~chr12 10021804 47270358 44 -+ 2.524077 43 16 27 43 124 TCGA-DX-A3UF-01A-11R-A30C-07 DMD~NchrX~23553396 intergenic "DMD," "-," chrX~chrX 33038256 23553396 48 -+ 2.666856 29 25 4 29 34 TCGA-DX-A3UF-01A-11R-A30C-07 FAM126B~COQ10B fusion "FAM126B," "COQ10B," chr2~chr2 201910219 198324656 7 -+ 1.747868 7 3 4 7 34 TCGA-DX-A3UF-01A-11R-A30C-07 GAPDH~NchrX~46299827 intergenic "GAPDH," "-," chr12~chrX 6646369 46299827 4 -- 1.386294 1 1 0 1 10 TCGA-DX-A3UF-01A-11R-A30C-07 GNG7~PAQR5 fusion "GNG7," "PAQR5," chr19~chr15 2520606 69692313 10 -+ 1.748067 10 8 2 10 6 TCGA-DX-A3UF-01A-11R-A30C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 100 -- 2.251809 100 100 0 100 60 TCGA-DX-A3UF-01A-11R-A30C-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32487941 32548633 38 -- 2.23723 8 0 8 8 6 TCGA-DX-A3UF-01A-11R-A30C-07 INO80D~NchrX~51480119 intergenic "INO80D,AC007383.3," "-," chr2~chrX 206950782 51480119 3 ++ 1.098612 2 0 2 2 4 TCGA-DX-A3UF-01A-11R-A30C-07 LPAR6~TM4SF1 fusion "LPAR6," "TM4SF1," chr13~chr3 48978317 149093556 2 -- 0.693147 2 0 2 2 20 TCGA-DX-A3UF-01A-11R-A30C-07 LPAR6~TM4SF1 fusion "LPAR6," "TM4SF1," chr13~chr3 48986557 149093556 5 -- 1.609438 5 1 4 5 18 TCGA-DX-A3UF-01A-11R-A30C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 45 -+ 2.429855 20 0 20 20 28 TCGA-DX-A3UF-01A-11R-A30C-07 Nchr15~21916043~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21916043 20876597 11 -- 2.145842 10 6 4 10 48 TCGA-DX-A3UF-01A-11R-A30C-07 Nchr15~55155259~UNC13C intergenic "-," "UNC13C," chr15~chr15 55155259 54908457 4 -- 1.386294 4 4 0 4 4 TCGA-DX-A3UF-01A-11R-A30C-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 2 ++ 0.693147 2 1 1 2 6 TCGA-DX-A3UF-01A-11R-A30C-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 8 ++ 1.559581 7 3 4 7 6 TCGA-DX-A3UF-01A-11R-A30C-07 Nchr1~569997~Nchr1~570160 intergenic "-," "-," chr1~chr1 569997 570160 2 -- 0.693147 2 1 1 2 42 TCGA-DX-A3UF-01A-11R-A30C-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 8 ++ 1.213008 6 6 0 6 2 TCGA-DX-A3UF-01A-11R-A30C-07 Nchr7~110514869~IMMP2L intergenic "-," "IMMP2L," chr7~chr7 110514869 110303777 3 -- 1.098612 3 2 1 3 14 TCGA-DX-A3UF-01A-11R-A30C-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 169 ++ 3.000427 19 7 12 19 16 TCGA-DX-A3UF-01A-11R-A30C-07 NchrX~33742075~NchrX~33428291 intergenic "-," "-," chrX~chrX 33742075 33428291 2 -- 0.693147 2 0 2 2 22 TCGA-DX-A3UF-01A-11R-A30C-07 NchrX~33743745~NchrX~33428291 intergenic "-," "-," chrX~chrX 33743745 33428291 3 -- 1.098612 3 1 2 3 20 TCGA-DX-A3UF-01A-11R-A30C-07 NchrX~33744619~NchrX~33428291 intergenic "-," "-," chrX~chrX 33744619 33428291 10 -- 2.025326 10 1 9 10 28 TCGA-DX-A3UF-01A-11R-A30C-07 NchrX~64295792~NchrX~64586518 intergenic "-," "-," chrX~chrX 64295792 64586518 3 ++ 1.098612 1 0 1 1 2 TCGA-DX-A3UF-01A-11R-A30C-07 PPP1R3B~ERI1 fusion "PPP1R3B," "ERI1," chr8~chr8 9008073 8951272 8 -+ 1.213008 8 6 2 8 44 TCGA-DX-A3UF-01A-11R-A30C-07 PPP1R3B~ERI1 fusion "PPP1R3B," "ERI1," chr8~chr8 9008073 8957369 22 -+ 2.515583 22 14 8 22 76 TCGA-DX-A3UF-01A-11R-A30C-07 RB1~CLEC2B fusion "RB1," "CLEC2B," chr13~chr12 48881542 10015172 19 +- 1.90966 19 14 5 19 62 TCGA-DX-A3UF-01A-11R-A30C-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 9 ++ 2.043192 9 7 2 9 22 TCGA-DX-A3UF-01A-11R-A30C-07 UBE2G2~Nchr21~17909699 intergenic "UBE2G2," "-," chr21~chr21 46221621 17909699 31 -+ 2.572487 8 2 6 8 18 TCGA-DX-A3UE-01A-11R-A30C-07 BEST1~Nchr11~77445551 intergenic "BEST1,FTH1," "-," chr11~chr11 61732197 77445551 4 -- 1.386294 3 3 0 3 24 TCGA-DX-A3UE-01A-11R-A30C-07 GAPDH~NchrX~46299827 intergenic "GAPDH," "-," chr12~chrX 6646369 46299827 8 -- 1.906155 1 1 0 1 8 TCGA-DX-A3UE-01A-11R-A30C-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 33 -- 1.692641 33 1 32 33 20 TCGA-DX-A3UE-01A-11R-A30C-07 Nchr11~27603266~RPS25 intergenic "-," "RPS25," chr11~chr11 27603266 118888759 2 -- 0.693147 1 0 1 1 190 TCGA-DX-A3UE-01A-11R-A30C-07 Nchr11~47213097~RPS20 intergenic "-," "RPS20," chr11~chr8 47213097 56986962 3 +- 1.098612 2 0 2 2 46 TCGA-DX-A3UE-01A-11R-A30C-07 Nchr11~65190797~Nchr11~65190900 intergenic "-," "-," chr11~chr11 65190797 65190900 3 -- 0.636514 3 0 3 3 2 TCGA-DX-A3UE-01A-11R-A30C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 77 -+ 2.500279 32 0 32 32 36 TCGA-DX-A3UE-01A-11R-A30C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 47 -+ 2.926504 42 21 21 42 184 TCGA-DX-A3UE-01A-11R-A30C-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 2 ++ 0.693147 1 1 0 1 4 TCGA-DX-A3UE-01A-11R-A30C-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40768381 12 ++ 2.253858 8 0 8 8 30 TCGA-DX-A3UE-01A-11R-A30C-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 232 ++ 2.872584 35 3 32 35 26 TCGA-DX-A3UE-01A-11R-A30C-07 Nchr7~40551096~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40551096 40789033 5 ++ 1.332179 3 2 1 3 18 TCGA-DX-A3UE-01A-11R-A30C-07 NchrX~45212957~NchrX~45461542 intergenic "-," "-," chrX~chrX 45212957 45461542 2 ++ 0.693147 2 0 2 2 2 TCGA-DX-A3UE-01A-11R-A30C-07 RP11-429G19.2~Nchr10~132582225 intergenic "RP11-429G19.2,ENTPD1," "-," chr10~chr10 97516012 132582225 6 ++ 1.329661 5 2 3 5 4 TCGA-DX-A3UE-01A-11R-A30C-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 2 ++ 0.693147 2 1 1 2 10 TCGA-DX-A3UE-01A-11R-A30C-07 TPM2~MYH11 fusion "TPM2," "MYH11," chr9~chr16 35689701 15812234 3 -- 0.636514 3 0 3 3 2 TCGA-DX-A3UE-01A-11R-A30C-07 VTI1A~Nchr10~110036926 intergenic "VTI1A," "-," chr10~chr10 114224416 110036926 7 +- 1.351784 5 3 2 5 8 TCGA-DX-A3UE-01A-11R-A30C-07 ZIC1~Nchr3~147406764 intergenic "ZIC1," "-," chr3~chr3 147139346 147406764 4 ++ 1.386294 3 2 1 3 12 TCGA-DX-A48J-01A-21R-A30C-07 CAPN2~Nchr1~78445854 intergenic "CAPN2," "-," chr1~chr1 223954133 78445854 2 +- 0.693147 2 1 1 2 8 TCGA-DX-A48J-01A-21R-A30C-07 CTD-2337A12.1~CAST fusion "CTD-2337A12.1," "CAST," chr5~chr5 95715356 96011243 6 ++ 1.56071 2 1 1 2 8 TCGA-DX-A48J-01A-21R-A30C-07 CTDSP1~RP5-1116C7.1 fusion "CTDSP1," "RP5-1116C7.1," chr2~chr1 219267128 172113577 3 +- 1.098612 2 2 0 2 6 TCGA-DX-A48J-01A-21R-A30C-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 222 -- 2.609146 110 21 89 110 2 TCGA-DX-A48J-01A-21R-A30C-07 NOP56~Nchr12~79952582 intergenic "NOP56,NOP56," "-," chr20~chr12 2637857 79952582 4 ++ 1.386294 1 0 1 1 6 TCGA-DX-A48J-01A-21R-A30C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 65 -+ 2.397314 30 0 30 30 24 TCGA-DX-A48J-01A-21R-A30C-07 Nchr12~63359160~Nchr12~63359287 intergenic "-," "-," chr12~chr12 63359160 63359287 2 -- 0.693147 2 0 2 2 8 TCGA-DX-A48J-01A-21R-A30C-07 Nchr12~63359191~Nchr12~63359129 intergenic "-," "-," chr12~chr12 63359191 63359129 2 ++ 0.693147 2 2 0 2 2 TCGA-DX-A48J-01A-21R-A30C-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 8 ++ 1.667462 6 3 3 6 10 TCGA-DX-A48J-01A-21R-A30C-07 Nchr17~16343551~Nchr17~16344712 intergenic "-," "-," chr17~chr17 16343551 16344712 2 -+ 0.693147 2 2 0 2 36 TCGA-DX-A48J-01A-21R-A30C-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 9 ++ 1.676988 7 3 4 7 60 TCGA-DX-A48J-01A-21R-A30C-07 Nchr1~568956~TAGLN intergenic "-," "TAGLN," chr1~chr11 568956 117074952 3 -+ 0.636514 2 2 0 2 8 TCGA-DX-A48J-01A-21R-A30C-07 Nchr1~569174~DES intergenic "-," "DES," chr1~chr2 569174 220291284 2 -+ 0.693147 2 2 0 2 2 TCGA-DX-A48J-01A-21R-A30C-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 3 -- 0.636514 2 2 0 2 6 TCGA-DX-A48J-01A-21R-A30C-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 3 ++ 1.098612 2 2 0 2 6 TCGA-DX-A48J-01A-21R-A30C-07 Nchr6~25998513~LY6G5C intergenic "-," "LY6G5C," chr6~chr6 25998513 31647045 2 +- 0.693147 2 1 1 2 10 TCGA-DX-A48J-01A-21R-A30C-07 Nchr6~26017061~LY6G5C intergenic "-," "LY6G5C," chr6~chr6 26017061 31647045 9 +- 1.735126 9 2 7 9 78 TCGA-DX-A48J-01A-21R-A30C-07 Nchr8~28096433~PDLIM7 intergenic "-," "PDLIM7," chr8~chr5 28096433 176916833 2 +- 0.693147 2 2 0 2 4 TCGA-DX-A48J-01A-21R-A30C-07 Nchr9~78271710~Nchr9~78494157 intergenic "-," "-," chr9~chr9 78271710 78494157 4 ++ 1.039721 4 3 1 4 28 TCGA-DX-A48J-01A-21R-A30C-07 PCSK7~RPS20 fusion "TAGLN,PCSK7,TAGLN," "RPS20," chr11~chr8 117075249 56987032 4 -- 1.386294 4 0 4 4 2 TCGA-DX-A48J-01A-21R-A30C-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 3 ++ 1.098612 3 3 0 3 4 TCGA-DX-A48J-01A-21R-A30C-07 SHC1~Nchr17~42306882 intergenic "SHC1," "-," chr1~chr17 154938544 42306882 3 ++ 1.098612 3 3 0 3 6 TCGA-DX-A48J-01A-21R-A30C-07 SORBS1~CYP2C8 fusion "SORBS1," "CYP2C8," chr10~chr10 97250792 96827448 3 -- 1.098612 3 2 1 3 8 TCGA-MJ-A68J-01A-11R-A30C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049717 48269223 2 +- 0.693147 1 1 0 1 6 TCGA-MJ-A68J-01A-11R-A30C-07 GIGYF2~EEF1B2 fusion "GIGYF2," "EEF1B2," chr2~chr2 233594854 207024743 2 ++ 0.693147 1 1 0 1 4 TCGA-MJ-A68J-01A-11R-A30C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 82 -+ 2.569761 34 0 34 34 20 TCGA-MJ-A68J-01A-11R-A30C-07 Nchr13~77303480~Nchr13~77011004 intergenic "-," "-," chr13~chr13 77303480 77011004 3 -- 0.636514 1 0 1 1 4 TCGA-MJ-A68J-01A-11R-A30C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 28 -+ 2.601682 27 14 13 27 130 TCGA-MJ-A68J-01A-11R-A30C-07 Nchr2~154265755~Nchr2~154589282 intergenic "-," "-," chr2~chr2 154265755 154589282 5 ++ 1.332179 3 3 0 3 6 TCGA-MJ-A68J-01A-11R-A30C-07 Nchr3~112315758~Nchr3~112315859 intergenic "-," "-," chr3~chr3 112315758 112315859 5 -- 0.673012 5 0 5 5 2 TCGA-MJ-A68J-01A-11R-A30C-07 Nchr4~57897504~IGFBP7 intergenic "-," "RP11-738E22.2,IGFBP7,RP11-738E22.2," chr4~chr4 57897504 57898642 2 +- 0.693147 1 1 0 1 20 TCGA-MJ-A68J-01A-11R-A30C-07 Nchr5~151327356~CTB-12O2.1 intergenic "-," "CTB-12O2.1," chr5~chr5 151327356 151574285 3 ++ 0.636514 3 2 1 3 14 TCGA-MJ-A68J-01A-11R-A30C-07 Nchr5~151327356~CTB-12O2.1 intergenic "-," "CTB-12O2.1," chr5~chr5 151327356 151575002 7 ++ 1.747868 3 2 1 3 12 TCGA-MJ-A68J-01A-11R-A30C-07 Nchr5~151327356~CTB-12O2.1 intergenic "-," "CTB-12O2.1," chr5~chr5 151327356 151646826 3 ++ 1.098612 2 1 1 2 42 TCGA-MJ-A68J-01A-11R-A30C-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 3 -- 1.098612 1 1 0 1 2 TCGA-MJ-A68J-01A-11R-A30C-07 RP1-34H18.1~RP11-781A6.1 fusion "RP1-34H18.1," "RP11-781A6.1," chr12~chr12 77966046 78177043 3 ++ 1.098612 3 1 2 3 10 TCGA-MJ-A68J-01A-11R-A30C-07 ST3GAL4~Nchr11~126522676 intergenic "ST3GAL4," "-," chr11~chr11 126279306 126522676 4 ++ 1.039721 4 1 3 4 6 TCGA-LI-A67I-01A-31R-A30C-07 AUTS2~ACTR1A fusion "AUTS2," "ACTR1A," chr7~chr10 69364484 104250370 11 +- 2.145842 8 6 2 8 18 TCGA-LI-A67I-01A-31R-A30C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48265930 94034038 2 -+ 0.693147 1 1 0 1 6 TCGA-LI-A67I-01A-31R-A30C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266755 94052369 3 -+ 1.098612 1 0 1 1 2 TCGA-LI-A67I-01A-31R-A30C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94056607 48270054 2 +- 0.693147 2 1 1 2 2 TCGA-LI-A67I-01A-31R-A30C-07 EIF4EBP1~ADAM18 fusion "EIF4EBP1," "ADAM18," chr8~chr8 37888236 39564309 2 ++ 0.693147 2 1 1 2 10 TCGA-LI-A67I-01A-31R-A30C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31237270 31322303 2 -- 0.693147 1 0 1 1 6 TCGA-LI-A67I-01A-31R-A30C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 19 -- 2.250579 19 18 1 19 42 TCGA-LI-A67I-01A-31R-A30C-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 3 -- 1.098612 3 0 3 3 8 TCGA-LI-A67I-01A-31R-A30C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 9 -+ 1.889159 8 3 5 8 70 TCGA-LI-A67I-01A-31R-A30C-07 Nchr21~28899103~Nchr21~28962237 intergenic "-," "-," chr21~chr21 28899103 28962237 3 ++ 0.636514 1 0 1 1 6 TCGA-LI-A67I-01A-31R-A30C-07 Nchr6~8438264~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8438264 8784424 4 ++ 1.039721 3 0 3 3 2 TCGA-LI-A67I-01A-31R-A30C-07 PLSCR3~PITPNB fusion "PLSCR3," "PITPNB," chr17~chr22 7293953 28221741 41 -- 3.066669 40 19 21 40 156 TCGA-LI-A67I-01A-31R-A30C-07 PLSCR3~PITPNB fusion "PLSCR3," "PITPNB," chr17~chr22 7293953 28221744 2 -- 0.693147 2 0 2 2 170 TCGA-LI-A67I-01A-31R-A30C-07 TK2~Nchr16~65279876 intergenic "TK2," "-," chr16~chr16 66570867 65279876 2 -- 0.693147 1 1 0 1 34 TCGA-LI-A67I-01A-31R-A30C-07 TK2~Nchr16~65281009 intergenic "TK2," "-," chr16~chr16 66570867 65281009 40 -- 2.791697 35 20 15 35 160 TCGA-MJ-A68H-01A-11R-A30C-07 ANKRD12~Nchr18~10057081 intergenic "ANKRD12," "-," chr18~chr18 9136963 10057081 28 +- 2.382481 25 13 12 25 120 TCGA-MJ-A68H-01A-11R-A30C-07 ANKRD12~Nchr18~10059932 intergenic "ANKRD12," "-," chr18~chr18 9136963 10059932 18 +- 2.370135 17 4 13 17 258 TCGA-MJ-A68H-01A-11R-A30C-07 ANKRD12~Nchr18~10059932 intergenic "ANKRD12," "-," chr18~chr18 9136973 10059932 2 +- 0.693147 2 1 1 2 250 TCGA-MJ-A68H-01A-11R-A30C-07 ANKRD12~Nchr18~10060299 intergenic "ANKRD12," "-," chr18~chr18 9136963 10060299 5 +- 1.332179 5 2 3 5 120 TCGA-MJ-A68H-01A-11R-A30C-07 ANKRD12~Nchr18~10060848 intergenic "ANKRD12," "-," chr18~chr18 9136963 10060848 11 +- 2.098274 11 6 5 11 98 TCGA-MJ-A68H-01A-11R-A30C-07 ANKRD12~Nchr18~10060848 intergenic "ANKRD12," "-," chr18~chr18 9137094 10060848 3 +- 1.098612 3 1 2 3 52 TCGA-MJ-A68H-01A-11R-A30C-07 ARID1A~TRNP1 fusion "ARID1A," "TRNP1," chr1~chr1 27059283 27326338 19 ++ 2.132192 16 12 4 16 42 TCGA-MJ-A68H-01A-11R-A30C-07 CDH2~EPB41L3 fusion "CDH2," "EPB41L3," chr18~chr18 25727637 5489193 25 -- 2.567046 25 2 23 25 100 TCGA-MJ-A68H-01A-11R-A30C-07 GAPDH~NchrX~46299827 intergenic "GAPDH," "-," chr12~chrX 6646369 46299827 5 -- 1.332179 1 1 0 1 10 TCGA-MJ-A68H-01A-11R-A30C-07 HIF3A~DNMT1 fusion "HIF3A," "DNMT1," chr19~chr19 46838243 10277361 11 +- 2.271869 11 5 6 11 14 TCGA-MJ-A68H-01A-11R-A30C-07 HLA-B~Nchr6~29902006 intergenic "HLA-B," "-," chr6~chr6 31323352 29902006 2 ++ 0.693147 1 1 0 1 18 TCGA-MJ-A68H-01A-11R-A30C-07 HN1~Nchr2~174296244 intergenic "HN1," "-," chr17~chr2 73143651 174296244 24 -- 1.338056 11 11 0 11 6 TCGA-MJ-A68H-01A-11R-A30C-07 ILK~MYH11 fusion "TAF10,ILK," "MYH11," chr11~chr16 6630796 15826549 2 -- 0.693147 2 0 2 2 2 TCGA-MJ-A68H-01A-11R-A30C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 78 -+ 2.333156 38 0 37 38 32 TCGA-MJ-A68H-01A-11R-A30C-07 Nchr15~21905473~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21905473 20876597 2 -- 0.693147 2 1 1 2 12 TCGA-MJ-A68H-01A-11R-A30C-07 Nchr19~13789861~MYO9B intergenic "-," "MYO9B," chr19~chr19 13789861 17303555 3 -+ 0.636514 3 0 3 3 2 TCGA-MJ-A68H-01A-11R-A30C-07 Nchr4~24473998~Nchr4~24259890 intergenic "-," "-," chr4~chr4 24473998 24259890 5 -- 1.609438 2 0 2 2 8 TCGA-MJ-A68H-01A-11R-A30C-07 Nchr9~17906920~Nchr9~18163860 intergenic "-," "-," chr9~chr9 17906920 18163860 3 ++ 1.098612 2 2 0 2 2 TCGA-MJ-A68H-01A-11R-A30C-07 RBFOX2~C18orf45 fusion "RBFOX2," "C18orf45," chr22~chr18 36290860 20878031 2 -- 0.693147 2 2 0 2 18 TCGA-MJ-A68H-01A-11R-A30C-07 RP11-335L9.1~Nchr3~177483365 intergenic "RP11-335L9.1," "-," chr3~chr3 177159898 177483365 2 ++ 0.693147 2 2 0 2 24 TCGA-MJ-A68H-01A-11R-A30C-07 RPS5~SLC27A5 fusion "RPS5," "SLC27A5," chr19~chr19 58899612 59012777 7 +- 1.94591 6 2 4 6 20 TCGA-MJ-A68H-01A-11R-A30C-07 SIN3B~C19orf57 fusion "SIN3B," "C19orf57," chr19~chr19 16952779 13996868 7 +- 1.94591 3 1 2 3 6 TCGA-MJ-A68H-01A-11R-A30C-07 TPM2~MYH11 fusion "TPM2," "MYH11," chr9~chr16 35689701 15812234 5 -- 1.332179 5 2 3 5 8 TCGA-MJ-A68H-01A-11R-A30C-07 TPM2~Nchr5~163136512 intergenic "TPM2," "-," chr9~chr5 35685277 163136512 4 -- 0.562335 4 0 4 4 72 TCGA-MJ-A68H-01A-11R-A30C-07 TXNDC11~Nchr16~12175128 intergenic "TXNDC11," "-," chr16~chr16 11827838 12175128 4 -- 1.039721 2 1 1 2 28 TCGA-DX-A3UB-01A-11R-A30C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 44 -+ 2.311505 12 0 12 12 18 TCGA-DX-A3UB-01A-11R-A30C-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 5 ++ 1.332179 4 0 4 4 8 TCGA-DX-A3UB-01A-11R-A30C-07 TPM1~Nchr15~81792052 intergenic "TPM1," "-," chr15~chr15 63336351 81792052 3 +- 0.636514 3 1 2 3 8 TCGA-DX-A3UB-01A-11R-A30C-07 TPM1~Nchr15~81808101 intergenic "TPM1," "-," chr15~chr15 63336351 81808101 57 +- 2.612276 56 19 37 56 324 TCGA-DX-A3UB-01A-11R-A30C-07 TPM1~Nchr15~81808101 intergenic "TPM1," "-," chr15~chr15 63336030 81808101 83 +- 2.923008 82 22 60 82 492 TCGA-DX-A3UB-01A-11R-A30C-07 TPM1~Nchr15~81815029 intergenic "TPM1," "-," chr15~chr15 63336030 81815029 7 +- 1.549826 7 4 3 7 498 TCGA-DX-A3UB-01A-11R-A30C-07 TPM1~Nchr15~81815029 intergenic "TPM1," "-," chr15~chr15 63336351 81815029 4 +- 1.386294 4 0 4 4 336 TCGA-DX-A3UB-01A-11R-A30C-07 TPM1~Nchr15~81816030 intergenic "TPM1," "-," chr15~chr15 63336030 81816030 28 +- 2.651193 27 14 13 27 128 TCGA-DX-A3UB-01A-11R-A30C-07 TPM1~Nchr15~81816030 intergenic "TPM1," "-," chr15~chr15 63336351 81816030 17 +- 2.445468 17 11 6 17 118 TCGA-DX-A3UB-01A-11R-A30C-07 TPM1~Nchr15~81822976 intergenic "TPM1," "-," chr15~chr15 63336351 81822976 2 +- 0.693147 2 1 1 2 204 TCGA-RN-A68Q-01A-11R-A30C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 92 -- 2.065903 92 92 0 92 104 TCGA-RN-A68Q-01A-11R-A30C-07 HLA-DRB1~HLA-DQB1 fusion "HLA-DRB1," "HLA-DQB1,HLA-DQB1," chr6~chr6 32551968 32632691 2 -- 0.693147 2 2 0 2 2 TCGA-RN-A68Q-01A-11R-A30C-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32487941 32548633 465 -- 2.382248 79 9 70 79 104 TCGA-RN-A68Q-01A-11R-A30C-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 3173 -- 2.431463 1975 380 1542 1975 26 TCGA-RN-A68Q-01A-11R-A30C-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32497902 32525963 336 -- 2.170451 66 24 42 66 10 TCGA-RN-A68Q-01A-11R-A30C-07 Nchr11~15291173~Nchr11~15504394 intergenic "-," "-," chr11~chr11 15291173 15504394 2 ++ 0.693147 2 0 2 2 14 TCGA-RN-A68Q-01A-11R-A30C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 92 -+ 2.535054 41 0 41 41 28 TCGA-RN-A68Q-01A-11R-A30C-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 5 ++ 1.05492 5 2 3 5 10 TCGA-RN-A68Q-01A-11R-A30C-07 Nchr1~98523354~Nchr1~98747916 intergenic "-," "-," chr1~chr1 98523354 98747916 3 ++ 0.636514 3 2 1 3 6 TCGA-RN-A68Q-01A-11R-A30C-07 Nchr7~20454166~Nchr7~20454248 intergenic "-," "-," chr7~chr7 20454166 20454248 4 -- 0.562335 4 4 0 4 4 TCGA-RN-A68Q-01A-11R-A30C-07 Nchr9~85111773~Nchr9~85394794 intergenic "-," "-," chr9~chr9 85111773 85394794 5 ++ 1.332179 4 0 4 4 14 TCGA-RN-A68Q-01A-11R-A30C-07 RP11-348F1.2~NchrX~51381116 intergenic "RP11-348F1.2," "-," chrX~chrX 51139533 51381116 2 ++ 0.693147 2 1 1 2 2 TCGA-DX-A6BA-01A-11R-A30C-07 ACTB~ACTG2 fusion "ACTB," "ACTG2," chr7~chr2 5567912 74143711 4 -+ 1.386294 2 2 0 2 6 TCGA-DX-A6BA-01A-11R-A30C-07 DDOST~CUX1 fusion "DDOST," "CUX1," chr1~chr7 20987374 101671378 3 -+ 1.098612 1 1 0 1 2 TCGA-DX-A6BA-01A-11R-A30C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 112 -- 2.076032 112 112 0 112 72 TCGA-DX-A6BA-01A-11R-A30C-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 47 -- 2.221659 47 1 46 47 48 TCGA-DX-A6BA-01A-11R-A30C-07 Nchr15~21916043~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21916043 20876597 3 -- 0.636514 2 0 2 2 16 TCGA-DX-A6BA-01A-11R-A30C-07 Nchr15~91538165~VPS33B intergenic "-," "VPS33B," chr15~chr15 91538165 91553076 4 +- 1.386294 3 2 1 3 32 TCGA-DX-A6BA-01A-11R-A30C-07 Nchr19~28967409~Nchr3~173609733 intergenic "-," "-," chr19~chr3 28967409 173609733 4 -+ 0.562335 4 0 4 4 4 TCGA-DX-A6BA-01A-11R-A30C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 2 -+ 0.693147 1 1 0 1 54 TCGA-DX-A6BA-01A-11R-A30C-07 Nchr21~9827407~TPM2 intergenic "-," "TPM2," chr21~chr9 9827407 35685066 5 -- 0.500402 3 1 2 3 2 TCGA-DX-A6BA-01A-11R-A30C-07 Nchr2~112949117~Nchr2~112949359 intergenic "-," "-," chr2~chr2 112949117 112949359 2 -- 0.693147 2 0 2 2 2 TCGA-DX-A6BA-01A-11R-A30C-07 Nchr5~113441478~Nchr5~113696642 intergenic "-," "-," chr5~chr5 113441478 113696642 5 ++ 1.609438 5 4 1 5 28 TCGA-DX-A6BA-01A-11R-A30C-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40768381 6 ++ 1.329661 1 0 1 1 6 TCGA-DX-A6BA-01A-11R-A30C-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 228 ++ 2.888733 8 1 7 8 6 TCGA-DX-A6BA-01A-11R-A30C-07 NchrX~71247549~NchrX~95385077 intergenic "-," "-," chrX~chrX 71247549 95385077 19 +- 2.479122 14 12 2 14 40 TCGA-DX-A6BA-01A-11R-A30C-07 NchrX~71247549~NchrX~95406230 intergenic "-," "-," chrX~chrX 71247549 95406230 7 +- 1.549826 3 2 1 3 44 TCGA-DX-A6BA-01A-11R-A30C-07 NchrX~71247549~NchrX~95449923 intergenic "-," "-," chrX~chrX 71247549 95449923 5 +- 1.609438 5 3 2 5 70 TCGA-DX-A6BA-01A-11R-A30C-07 PTPN9~Nchr15~94335375 intergenic "PTPN9," "-," chr15~chr15 75871055 94335375 8 -+ 1.732868 7 0 7 7 8 TCGA-DX-A6BA-01A-11R-A30C-07 PTPN9~Nchr15~94346208 intergenic "PTPN9," "-," chr15~chr15 75871055 94346208 4 -+ 1.386294 4 0 4 4 8 TCGA-DX-A6BA-01A-11R-A30C-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 2 ++ 0.693147 2 1 1 2 20 TCGA-DX-A6BA-01A-11R-A30C-07 SHC1~Nchr17~42306882 intergenic "SHC1," "-," chr1~chr17 154938544 42306882 2 ++ 0.693147 2 2 0 2 2 TCGA-DX-A6BA-01A-11R-A30C-07 TPM2~Nchr3~27674702 intergenic "TPM2," "-," chr9~chr3 35685539 27674702 9 -+ 1.21489 6 0 6 6 8 TCGA-DX-A6BA-01A-11R-A30C-07 VPS33B~Nchr15~93352239 intergenic "VPS33B," "-," chr15~chr15 91557034 93352239 4 -- 1.039721 4 3 1 4 10 TCGA-DX-A6BA-01A-11R-A30C-07 ZNF141~ZNF718 fusion "ZNF141," "ZNF718," chr4~chr4 338219 154702 5 ++ 1.332179 1 1 0 1 16 TCGA-DX-A6B8-01A-11R-A30C-07 COBLL1~FMNL2 fusion "COBLL1," "FMNL2," chr2~chr2 165697666 153378457 5 -+ 1.609438 5 5 0 5 6 TCGA-DX-A6B8-01A-11R-A30C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266740 94035596 5 -+ 1.609438 4 1 3 4 100 TCGA-DX-A6B8-01A-11R-A30C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273978 94039554 13 -+ 0.271189 13 13 0 13 22 TCGA-DX-A6B8-01A-11R-A30C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273675 94047856 7 -+ 1.747868 4 4 0 4 36 TCGA-DX-A6B8-01A-11R-A30C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272610 94053739 5 -+ 1.332179 4 3 1 4 26 TCGA-DX-A6B8-01A-11R-A30C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264376 94054429 3 -+ 1.098612 2 2 0 2 52 TCGA-DX-A6B8-01A-11R-A30C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271304 94055762 2 -+ 0.693147 2 1 1 2 42 TCGA-DX-A6B8-01A-11R-A30C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266738 189859032 28 -+ 0.905789 20 20 0 20 46 TCGA-DX-A6B8-01A-11R-A30C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268840 189863400 5 -+ 1.05492 3 3 0 3 12 TCGA-DX-A6B8-01A-11R-A30C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266863 189867745 2 -+ 0.693147 1 1 0 1 14 TCGA-DX-A6B8-01A-11R-A30C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48275128 189868718 2 -+ 0.693147 2 2 0 2 4 TCGA-DX-A6B8-01A-11R-A30C-07 COL1A1~COL6A2 fusion "COL1A1," "COL6A2," chr17~chr21 48270017 47532439 4 -+ 0.562335 4 3 1 4 18 TCGA-DX-A6B8-01A-11R-A30C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94057197 48263868 2 +- 0.693147 2 1 1 2 58 TCGA-DX-A6B8-01A-11R-A30C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047864 48266156 13 +- 1.458319 1 0 1 1 54 TCGA-DX-A6B8-01A-11R-A30C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94035615 48266371 5 +- 1.05492 4 1 3 4 20 TCGA-DX-A6B8-01A-11R-A30C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48273560 9 +- 1.581094 4 1 3 4 116 TCGA-DX-A6B8-01A-11R-A30C-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94048828 189872236 4 ++ 1.039721 3 0 3 3 10 TCGA-DX-A6B8-01A-11R-A30C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870985 48265998 5 +- 1.609438 4 0 4 4 32 TCGA-DX-A6B8-01A-11R-A30C-07 COL6A1~COL1A1 fusion "COL6A1," "COL1A1," chr21~chr17 47412724 48266371 2 +- 0.693147 1 0 1 1 10 TCGA-DX-A6B8-01A-11R-A30C-07 COL6A1~COL1A2 fusion "COL6A1," "COL1A2," chr21~chr7 47422315 94053739 2 ++ 0.693147 1 1 0 1 4 TCGA-DX-A6B8-01A-11R-A30C-07 FGFR1~RP11-350N15.4 fusion "FGFR1," "RP11-350N15.4," chr8~chr8 38314874 38283468 7 -+ 1.94591 7 3 4 7 26 TCGA-DX-A6B8-01A-11R-A30C-07 HARS~Nchr5~136065318 intergenic "HARS," "-," chr5~chr5 140058587 136065318 19 -- 2.652588 19 13 6 19 32 TCGA-DX-A6B8-01A-11R-A30C-07 HARS~Nchr5~136065318 intergenic "HARS," "-," chr5~chr5 140062685 136065318 3 -- 1.098612 3 1 2 3 8 TCGA-DX-A6B8-01A-11R-A30C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 179 -- 2.527525 177 177 0 177 274 TCGA-DX-A6B8-01A-11R-A30C-07 LASS6~Nchr2~153046637 intergenic "LASS6," "-," chr2~chr2 169417832 153046637 12 +- 1.748155 12 1 11 12 26 TCGA-DX-A6B8-01A-11R-A30C-07 LRP1~COL1A1 fusion "LRP1," "COL1A1," chr12~chr17 57606933 48263303 2 +- 0.693147 2 1 1 2 4 TCGA-DX-A6B8-01A-11R-A30C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 61 -+ 2.287064 30 0 30 30 12 TCGA-DX-A6B8-01A-11R-A30C-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 2 ++ 0.693147 2 1 1 2 2 TCGA-DX-A6B8-01A-11R-A30C-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 2 ++ 0.693147 2 0 2 2 10 TCGA-DX-A6B8-01A-11R-A30C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 7 -+ 1.94591 5 2 3 5 140 TCGA-DX-A6B8-01A-11R-A30C-07 Nchr1~221460558~Nchr1~221727429 intergenic "-," "-," chr1~chr1 221460558 221727429 2 ++ 0.693147 2 0 2 2 2 TCGA-DX-A6B8-01A-11R-A30C-07 Nchr2~81775871~Nchr2~82049394 intergenic "-," "-," chr2~chr2 81775871 82049394 3 ++ 1.098612 1 0 1 1 58 TCGA-DX-A6B8-01A-11R-A30C-07 Nchr2~81775871~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81775871 82075877 28 ++ 2.651193 14 9 5 14 54 TCGA-DX-A6B8-01A-11R-A30C-07 Nchr4~182368925~Nchr4~182660640 intergenic "-," "-," chr4~chr4 182368925 182660640 4 ++ 1.386294 1 0 1 1 8 TCGA-DX-A6B8-01A-11R-A30C-07 RP1-34H18.1~NAV3 fusion "RP1-34H18.1," "NAV3," chr12~chr12 77966046 78334099 2 ++ 0.693147 1 1 0 1 12 TCGA-DX-A48N-01A-11R-A30C-07 ADAMTS5~Nchr21~28543481 intergenic "ADAMTS5," "-," chr21~chr21 28338443 28543481 5 ++ 1.332179 5 5 0 5 8 TCGA-DX-A48N-01A-11R-A30C-07 AKAP8L~Nchr12~83959023 intergenic "AKAP8L," "-," chr19~chr12 15507961 83959023 74 -- 3.008828 72 45 26 72 268 TCGA-DX-A48N-01A-11R-A30C-07 AKAP8L~Nchr12~83969780 intergenic "AKAP8L," "-," chr19~chr12 15507961 83969780 6 -- 1.56071 6 4 2 6 132 TCGA-DX-A48N-01A-11R-A30C-07 AKAP8L~Nchr12~83976262 intergenic "AKAP8L," "-," chr19~chr12 15503224 83976262 3 -- 1.098612 3 2 1 3 274 TCGA-DX-A48N-01A-11R-A30C-07 AKAP8L~Nchr12~83976262 intergenic "AKAP8L," "-," chr19~chr12 15507961 83976262 68 -- 2.852998 68 44 23 68 282 TCGA-DX-A48N-01A-11R-A30C-07 APBB2~RP11-956E11.1 fusion "APBB2," "RP11-956E11.1," chr4~chr12 40936473 69853297 7 -+ 1.549826 7 4 3 7 26 TCGA-DX-A48N-01A-11R-A30C-07 ARL1~Nchr12~82581990 intergenic "ARL1," "-," chr12~chr12 101801420 82581990 5 -- 1.609438 3 2 1 3 4 TCGA-DX-A48N-01A-11R-A30C-07 ATP2B1~Nchr12~68256371 intergenic "ATP2B1," "-," chr12~chr12 89995103 68256371 169 -+ 3.214269 164 89 74 164 868 TCGA-DX-A48N-01A-11R-A30C-07 ATP2B1~Nchr12~68256371 intergenic "ATP2B1," "-," chr12~chr12 89996820 68256371 7 -+ 1.747868 7 4 3 7 294 TCGA-DX-A48N-01A-11R-A30C-07 C12orf26~ATP2B1 fusion "C12orf26," "ATP2B1," chr12~chr12 82793173 90005149 216 +- 3.176482 213 90 123 213 756 TCGA-DX-A48N-01A-11R-A30C-07 C12orf26~ATP2B1 fusion "C12orf26," "ATP2B1," chr12~chr12 82793418 90005149 9 +- 1.735126 8 3 5 8 112 TCGA-DX-A48N-01A-11R-A30C-07 C12orf45~TXNRD1 fusion "C12orf45," "TXNRD1," chr12~chr12 105385626 104721293 10 ++ 1.695743 7 6 1 7 16 TCGA-DX-A48N-01A-11R-A30C-07 CCDC59~CHST11 fusion "CCDC59," "CHST11," chr12~chr12 82752002 105150727 40 -+ 2.920101 40 12 28 40 104 TCGA-DX-A48N-01A-11R-A30C-07 CCDC59~CHST11 fusion "CCDC59,C12orf26,CCDC59," "CHST11," chr12~chr12 82752458 105150727 11 -+ 1.546599 11 0 11 11 34 TCGA-DX-A48N-01A-11R-A30C-07 CCDC91~PTK2 fusion "CCDC91," "PTK2," chr12~chr8 28605587 141696793 5 +- 1.609438 5 1 4 5 26 TCGA-DX-A48N-01A-11R-A30C-07 CHST11~Nchr12~106746406 intergenic "CHST11," "-," chr12~chr12 104851292 106746406 2 ++ 0.693147 2 1 1 2 16 TCGA-DX-A48N-01A-11R-A30C-07 CHST11~Nchr1~185358878 intergenic "CHST11," "-," chr12~chr1 104851292 185358878 2 +- 0.693147 2 2 0 2 10 TCGA-DX-A48N-01A-11R-A30C-07 CHST11~Nchr1~185667874 intergenic "CHST11," "-," chr12~chr1 104995769 185667874 13 +- 2.057898 2 2 0 2 8 TCGA-DX-A48N-01A-11R-A30C-07 CHST11~Nchr1~185671059 intergenic "CHST11," "-," chr12~chr1 104995769 185671059 42 +- 2.994689 20 20 0 20 46 TCGA-DX-A48N-01A-11R-A30C-07 CNOT2~Nchr12~77959512 intergenic "CNOT2,CNOT2,CNOT2," "-," chr12~chr12 70637260 77959512 58 +- 2.535686 117 0 33 117 6 TCGA-DX-A48N-01A-11R-A30C-07 CNOT2~Nchr12~78944740 intergenic "CNOT2," "-," chr12~chr12 70704797 78944740 12 ++ 2.253858 12 8 4 12 32 TCGA-DX-A48N-01A-11R-A30C-07 CNOT2~Nchr12~78965605 intergenic "CNOT2," "-," chr12~chr12 70704797 78965605 3 ++ 1.098612 2 1 1 2 8 TCGA-DX-A48N-01A-11R-A30C-07 CNOT2~RP11-754N21.1 fusion "CNOT2," "RP11-754N21.1," chr12~chr12 70704797 78862347 17 ++ 2.282374 17 4 13 17 106 TCGA-DX-A48N-01A-11R-A30C-07 CNOT2~RP11-754N21.1 fusion "CNOT2," "RP11-754N21.1," chr12~chr12 70704797 78869468 9 ++ 1.889159 9 5 4 9 54 TCGA-DX-A48N-01A-11R-A30C-07 CNOT2~RP11-754N21.1 fusion "CNOT2," "RP11-754N21.1," chr12~chr12 70704797 78871173 40 ++ 2.776525 41 16 23 41 112 TCGA-DX-A48N-01A-11R-A30C-07 CNOT2~TMEM2 fusion "CNOT2," "TMEM2," chr12~chr9 70704797 74319719 7 +- 1.549826 7 4 3 7 28 TCGA-DX-A48N-01A-11R-A30C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94052430 48270175 10 +- 2.025326 3 1 2 3 14 TCGA-DX-A48N-01A-11R-A30C-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94047047 189869023 3 ++ 0.636514 3 2 1 3 2 TCGA-DX-A48N-01A-11R-A30C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870985 48265317 2 +- 0.693147 2 0 2 2 2 TCGA-DX-A48N-01A-11R-A30C-07 COL3A1~Nchr2~189615259 intergenic "COL3A1," "-," chr2~chr2 189866315 189615259 5 ++ 1.242453 6 3 2 6 42 TCGA-DX-A48N-01A-11R-A30C-07 CPSF6~CHMP1A fusion "CPSF6," "CHMP1A," chr12~chr16 69656342 89713739 3 +- 0.636514 1 0 1 1 8 TCGA-DX-A48N-01A-11R-A30C-07 CTD-2140B24.4~Nchr6~138109081 intergenic "ZNF10,CTD-2140B24.4," "-," chr12~chr6 133707600 138109081 7 ++ 1.549826 7 5 2 7 78 TCGA-DX-A48N-01A-11R-A30C-07 CTD-2140B24.4~Nchr6~138109083 intergenic "ZNF10,CTD-2140B24.4," "-," chr12~chr6 133707600 138109083 2 ++ 0.693147 2 1 1 2 78 TCGA-DX-A48N-01A-11R-A30C-07 CTD-2140B24.4~Nchr6~138109088 intergenic "ZNF10,CTD-2140B24.4," "-," chr12~chr6 133707600 138109088 24 ++ 2.345239 24 9 14 24 76 TCGA-DX-A48N-01A-11R-A30C-07 CTD-2140B24.4~Nchr6~138138645 intergenic "ZNF10,CTD-2140B24.4," "-," chr12~chr6 133707600 138138645 10 ++ 1.886697 10 8 2 10 36 TCGA-DX-A48N-01A-11R-A30C-07 CTD-2140B24.4~Nchr6~138181562 intergenic "ZNF10,CTD-2140B24.4," "-," chr12~chr6 133707600 138181562 29 ++ 2.297581 29 11 18 29 42 TCGA-DX-A48N-01A-11R-A30C-07 CTD-2140B24.4~Nchr6~138187997 intergenic "ZNF10,CTD-2140B24.4," "-," chr12~chr6 133707600 138187997 3 ++ 1.098612 3 1 2 3 16 TCGA-DX-A48N-01A-11R-A30C-07 CTDSP1~RP5-1116C7.1 fusion "CTDSP1," "RP5-1116C7.1," chr2~chr1 219267128 172113577 2 +- 0.693147 2 2 0 2 6 TCGA-DX-A48N-01A-11R-A30C-07 DLK1~COL1A1 fusion "DLK1," "COL1A1," chr14~chr17 101200571 48261714 2 +- 0.693147 2 1 1 2 2 TCGA-DX-A48N-01A-11R-A30C-07 DNM3~Nchr12~58702049 intergenic "DNM3," "-," chr1~chr12 172381031 58702049 17 ++ 2.42548 17 9 8 17 158 TCGA-DX-A48N-01A-11R-A30C-07 DNM3~Nchr12~58703694 intergenic "DNM3," "-," chr1~chr12 172357949 58703694 6 ++ 1.329661 6 3 3 6 8 TCGA-DX-A48N-01A-11R-A30C-07 DNM3~Nchr12~58733475 intergenic "DNM3," "-," chr1~chr12 172357949 58733475 11 ++ 1.893788 10 10 0 10 6 TCGA-DX-A48N-01A-11R-A30C-07 EDEM3~CTD-2626G11.1 fusion "EDEM3," "CTD-2626G11.1," chr1~chr19 184703665 20975318 11 -+ 1.798652 8 1 7 8 58 TCGA-DX-A48N-01A-11R-A30C-07 EDEM3~RP1-111D6.3 fusion "EDEM3," "RP1-111D6.2,RP1-111D6.3," chr1~chr6 184701971 149565137 4 -- 1.039721 4 4 0 4 22 TCGA-DX-A48N-01A-11R-A30C-07 ENTPD5~TSHR fusion "ENTPD5," "TSHR," chr14~chr14 74453517 81558875 6 -+ 1.791759 5 1 4 5 4 TCGA-DX-A48N-01A-11R-A30C-07 FAM114A1~FRS2 fusion "FAM114A1," "FRS2," chr4~chr12 38893451 69924645 7 ++ 1.747868 7 1 6 7 30 TCGA-DX-A48N-01A-11R-A30C-07 FAM134C~KIAA0100 fusion "FAM134C," "KIAA0100," chr17~chr17 40761104 26965660 2 -- 0.693147 2 1 1 2 6 TCGA-DX-A48N-01A-11R-A30C-07 FARSA~Nchr6~132613862 intergenic "FARSA," "-," chr19~chr6 13035649 132613862 4 ++ 1.609438 5 2 2 5 106 TCGA-DX-A48N-01A-11R-A30C-07 FARSA~Nchr6~132613862 intergenic "FARSA," "-," chr19~chr6 13035549 132613862 11 ++ 2.253858 12 6 5 12 98 TCGA-DX-A48N-01A-11R-A30C-07 FARSA~Nchr6~132613862 intergenic "FARSA," "-," chr19~chr6 13036012 132613862 179 ++ 2.827035 180 19 146 180 602 TCGA-DX-A48N-01A-11R-A30C-07 FARSA~Nchr6~132613862 intergenic "FARSA," "-," chr19~chr6 13035499 132613862 4 ++ 1.386294 4 1 3 4 94 TCGA-DX-A48N-01A-11R-A30C-07 FARSA~Nchr6~132613862 intergenic "FARSA," "-," chr19~chr6 13033450 132613862 11 ++ 1.641735 9 1 8 9 102 TCGA-DX-A48N-01A-11R-A30C-07 FARSA~Nchr6~132614829 intergenic "FARSA," "-," chr19~chr6 13036012 132614829 41 ++ 2.835876 36 21 15 36 200 TCGA-DX-A48N-01A-11R-A30C-07 FARSA~Nchr6~132614829 intergenic "FARSA," "-," chr19~chr6 13035499 132614829 2 ++ 0.693147 2 0 2 2 2 TCGA-DX-A48N-01A-11R-A30C-07 FARSA~Nchr6~132614849 intergenic "FARSA," "-," chr19~chr6 13036012 132614849 2 ++ 0.693147 1 0 1 1 174 TCGA-DX-A48N-01A-11R-A30C-07 FDPS~Nchr6~140886701 intergenic "FDPS,RP11-21N7.2,FDPS," "-," chr1~chr6 155279996 140886701 10 ++ 2.025326 7 5 2 7 28 TCGA-DX-A48N-01A-11R-A30C-07 FDPS~Nchr6~140942132 intergenic "FDPS,RP11-21N7.2,FDPS," "-," chr1~chr6 155279996 140942132 3 +- 1.098612 2 2 0 2 4 TCGA-DX-A48N-01A-11R-A30C-07 GABPB2~C12orf45 fusion "GABPB2," "C12orf45," chr1~chr12 151043410 105385490 13 ++ 1.991509 3 1 2 3 14 TCGA-DX-A48N-01A-11R-A30C-07 GLT25D2~Nchr4~41875218 intergenic "GLT25D2," "-," chr1~chr4 184006229 41875218 12 -- 1.979205 12 3 9 12 52 TCGA-DX-A48N-01A-11R-A30C-07 GPC1~XRCC6BP1 fusion "GPC1," "XRCC6BP1," chr2~chr12 241375501 58339411 9 ++ 1.735126 9 7 2 9 38 TCGA-DX-A48N-01A-11R-A30C-07 HIVEP2~MAP7 fusion "HIVEP2," "MAP7," chr6~chr6 143158072 136742937 19 -- 2.40616 10 9 1 10 26 TCGA-DX-A48N-01A-11R-A30C-07 HSPA8~Nchr11~122994908 intergenic "HSPA8," "-," chr11~chr11 122929340 122994908 15 -+ 2.083766 14 8 6 14 34 TCGA-DX-A48N-01A-11R-A30C-07 HSPA8~Nchr11~123006803 intergenic "HSPA8," "-," chr11~chr11 122929340 123006803 14 -+ 1.991346 15 11 3 15 28 TCGA-DX-A48N-01A-11R-A30C-07 LDLR~Nchr19~22772844 intergenic "LDLR," "-," chr19~chr19 11234020 22772844 7 ++ 1.549826 7 5 2 7 150 TCGA-DX-A48N-01A-11R-A30C-07 LDLR~Nchr19~22773382 intergenic "LDLR," "-," chr19~chr19 11234020 22773382 27 ++ 2.48012 27 19 8 27 84 TCGA-DX-A48N-01A-11R-A30C-07 LDLR~Nchr19~22777559 intergenic "LDLR," "-," chr19~chr19 11234020 22777559 14 ++ 1.470132 14 9 5 14 74 TCGA-DX-A48N-01A-11R-A30C-07 LDLR~Nchr19~22778165 intergenic "LDLR," "-," chr19~chr19 11234020 22778165 3 ++ 1.098612 3 3 0 3 18 TCGA-DX-A48N-01A-11R-A30C-07 LDLR~Nchr19~22778214 intergenic "LDLR," "-," chr19~chr19 11234020 22778214 4 ++ 0.693147 4 1 3 4 20 TCGA-DX-A48N-01A-11R-A30C-07 LLPH~Nchr12~89015224 intergenic "LLPH," "-," chr12~chr12 66517348 89015224 58 -- 2.772571 56 26 29 56 234 TCGA-DX-A48N-01A-11R-A30C-07 MDM2~Nchr1~185671059 intergenic "MDM2," "-," chr12~chr1 69230529 185671059 7 +- 1.475076 7 7 0 7 42 TCGA-DX-A48N-01A-11R-A30C-07 MGAT4C~Nchr12~63655829 intergenic "MGAT4C," "-," chr12~chr12 86603543 63655829 2 ++ 0.693147 2 2 0 2 2 TCGA-DX-A48N-01A-11R-A30C-07 MGAT4C~Nchr12~63655829 intergenic "MGAT4C," "-," chr12~chr12 86607202 63655829 5 ++ 1.05492 5 3 2 5 10 TCGA-DX-A48N-01A-11R-A30C-07 NAV3~CHST11 fusion "NAV3," "CHST11," chr12~chr12 78225484 104995684 15 ++ 2.303488 6 5 1 6 6 TCGA-DX-A48N-01A-11R-A30C-07 NAV3~RGL1 fusion "NAV3," "RGL1," chr12~chr1 78583999 183816700 4 ++ 0.562335 4 1 3 4 4 TCGA-DX-A48N-01A-11R-A30C-07 NUAK1~UHRF1BP1L fusion "NUAK1," "UHRF1BP1L," chr12~chr12 106500183 100433567 3 -- 0.636514 3 0 3 3 8 TCGA-DX-A48N-01A-11R-A30C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 39 -+ 2.247805 17 0 16 17 28 TCGA-DX-A48N-01A-11R-A30C-07 Nchr12~66515539~Nchr12~89015224 intergenic "-," "-," chr12~chr12 66515539 89015224 2 -- 0.636514 3 2 0 3 178 TCGA-DX-A48N-01A-11R-A30C-07 Nchr12~74678805~Nchr12~90708433 intergenic "-," "-," chr12~chr12 74678805 90708433 3 -+ 1.098612 3 0 3 3 2 TCGA-DX-A48N-01A-11R-A30C-07 Nchr12~87581176~MGAT4C intergenic "-," "MGAT4C," chr12~chr12 87581176 86603451 7 -+ 1.94591 2 2 0 2 6 TCGA-DX-A48N-01A-11R-A30C-07 Nchr12~89018395~Nchr6~141262101 intergenic "-," "-," chr12~chr6 89018395 141262101 7 -- 1.747868 7 4 3 7 34 TCGA-DX-A48N-01A-11R-A30C-07 Nchr13~24558072~SPATA13 intergenic "-," "SPATA13," chr13~chr13 24558072 24796957 2 ++ 0.693147 2 1 1 2 2 TCGA-DX-A48N-01A-11R-A30C-07 Nchr14~90085372~FOXN3 intergenic "-," "FOXN3," chr14~chr14 90085372 89878834 2 -- 0.693147 2 2 0 2 10 TCGA-DX-A48N-01A-11R-A30C-07 Nchr16~79619777~Nchr16~79246798 intergenic "-," "-," chr16~chr16 79619777 79246798 2 -- 0.693147 2 2 0 2 8 TCGA-DX-A48N-01A-11R-A30C-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 4 ++ 1.039721 2 0 2 2 16 TCGA-DX-A48N-01A-11R-A30C-07 Nchr18~37115422~Nchr18~36788753 intergenic "-," "-," chr18~chr18 37115422 36788753 4 -- 1.039721 4 3 1 4 10 TCGA-DX-A48N-01A-11R-A30C-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 9 -- 1.522955 6 0 6 6 22 TCGA-DX-A48N-01A-11R-A30C-07 Nchr19~13953590~FARSA intergenic "-," "FARSA," chr19~chr19 13953590 13035888 56 -+ 2.744519 4 4 0 4 4 TCGA-DX-A48N-01A-11R-A30C-07 Nchr19~30719580~ZNF536 intergenic "-," "ZNF536," chr19~chr19 30719580 30934468 2 ++ 0.693147 2 1 1 2 10 TCGA-DX-A48N-01A-11R-A30C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 48 -+ 2.643239 47 24 23 47 376 TCGA-DX-A48N-01A-11R-A30C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145013721 3 -+ 1.098612 3 1 2 3 42 TCGA-DX-A48N-01A-11R-A30C-07 Nchr1~184357308~SLC41A2 intergenic "-," "SLC41A2," chr1~chr12 184357308 105263940 8 -+ 1.667462 8 1 7 8 16 TCGA-DX-A48N-01A-11R-A30C-07 Nchr20~62886399~Nchr6~151795509 intergenic "-," "-," chr20~chr6 62886399 151795509 13 -- 2.098147 5 2 3 5 52 TCGA-DX-A48N-01A-11R-A30C-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 3 ++ 0.636514 1 1 0 1 66 TCGA-DX-A48N-01A-11R-A30C-07 Nchr2~114173319~Nchr9~68434529 intergenic "-," "-," chr2~chr9 114173319 68434529 3 -- 1.098612 2 0 2 2 6 TCGA-DX-A48N-01A-11R-A30C-07 Nchr6~134089969~Nchr6~133889386 intergenic "-," "-," chr6~chr6 134089969 133889386 25 -- 2.511595 9 7 2 9 60 TCGA-DX-A48N-01A-11R-A30C-07 Nchr6~143266628~Nchr6~141808744 intergenic "-," "-," chr6~chr6 143266628 141808744 2 -+ 0.693147 1 1 0 1 4 TCGA-DX-A48N-01A-11R-A30C-07 Nchr6~143267081~Nchr6~141808744 intergenic "-," "-," chr6~chr6 143267081 141808744 2 -+ 0.693147 2 0 2 2 26 TCGA-DX-A48N-01A-11R-A30C-07 Nchr6~29894282~HLA-B intergenic "-," "HLA-B," chr6~chr6 29894282 31324734 3 -- 0.636514 1 0 1 1 10 TCGA-DX-A48N-01A-11R-A30C-07 OSTF1~SMARCA4 fusion "OSTF1," "SMARCA4," chr9~chr19 77703642 11141406 85 ++ 2.766417 81 47 34 81 292 TCGA-DX-A48N-01A-11R-A30C-07 PCSK5~Nchr9~105622567 intergenic "PCSK5," "-," chr9~chr9 78547399 105622567 5 +- 1.609438 4 1 3 4 16 TCGA-DX-A48N-01A-11R-A30C-07 PEX3~Nchr6~142126428 intergenic "PEX3," "-," chr6~chr6 143795993 142126428 2 ++ 0.693147 2 1 1 2 32 TCGA-DX-A48N-01A-11R-A30C-07 PEX3~Nchr6~142134645 intergenic "PEX3," "-," chr6~chr6 143795993 142134645 9 ++ 1.522955 9 3 6 9 60 TCGA-DX-A48N-01A-11R-A30C-07 PLEKHA5~UHRF1 fusion "PLEKHA5," "UHRF1," chr12~chr19 19422819 4941540 4 ++ 1.386294 3 1 2 3 28 TCGA-DX-A48N-01A-11R-A30C-07 PPIL4~Nchr12~97695903 intergenic "PPIL4," "-," chr6~chr12 149842196 97695903 2 -+ 0.693147 2 1 1 2 18 TCGA-DX-A48N-01A-11R-A30C-07 PRUNE2~Nchr9~75956242 intergenic "PRUNE2," "-," chr9~chr9 79438548 75956242 78 -- 2.301742 77 19 58 77 356 TCGA-DX-A48N-01A-11R-A30C-07 PRUNE2~Nchr9~75975155 intergenic "PRUNE2," "-," chr9~chr9 79438548 75975155 5 -- 1.56071 6 2 3 6 18 TCGA-DX-A48N-01A-11R-A30C-07 PTAR1~PIP5K1B fusion "PTAR1," "PIP5K1B," chr9~chr9 72347055 71503897 17 -+ 2.037734 17 14 3 17 52 TCGA-DX-A48N-01A-11R-A30C-07 RNF2~DNM3 fusion "RNF2," "DNM3," chr1~chr1 185062408 171913537 3 ++ 1.098612 3 2 1 3 26 TCGA-DX-A48N-01A-11R-A30C-07 RNF2~DNM3 fusion "RNF2," "DNM3," chr1~chr1 185062408 171956796 4 ++ 1.386294 4 0 4 4 24 TCGA-DX-A48N-01A-11R-A30C-07 RP1-34H18.1~NAV3 fusion "RP1-34H18.1," "NAV3," chr12~chr12 77966046 78334099 5 ++ 1.332179 5 3 2 5 8 TCGA-DX-A48N-01A-11R-A30C-07 RP1-34H18.1~TMTC2 fusion "RP1-34H18.1," "TMTC2," chr12~chr12 77718994 83324210 5 ++ 1.05492 1 0 1 1 4 TCGA-DX-A48N-01A-11R-A30C-07 RP11-611E13.2~SLC41A2 fusion "RP11-611E13.2," "SLC41A2," chr12~chr12 70636577 105199115 29 -- 2.848555 41 4 24 41 188 TCGA-DX-A48N-01A-11R-A30C-07 RP11-611E13.2~SLC41A2 fusion "RP11-611E13.2," "SLC41A2," chr12~chr12 70636604 105199115 24 -- 2.395274 26 2 22 26 114 TCGA-DX-A48N-01A-11R-A30C-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 2 ++ 0.693147 2 2 0 2 14 TCGA-DX-A48N-01A-11R-A30C-07 SAMD5~RP11-307P5.1 fusion "SAMD5," "RP11-307P5.1," chr6~chr6 147830523 148054865 4 ++ 1.039721 4 2 2 4 2 TCGA-DX-A48N-01A-11R-A30C-07 SIK2~Nchr11~110792921 intergenic "SIK2," "-," chr11~chr11 111491126 110792921 21 +- 2.106913 21 3 18 21 58 TCGA-DX-A48N-01A-11R-A30C-07 SIK2~Nchr11~110860729 intergenic "SIK2," "-," chr11~chr11 111491126 110860729 3 +- 1.098612 3 2 1 3 8 TCGA-DX-A48N-01A-11R-A30C-07 SLC35E3~ACAD10 fusion "SLC35E3," "ACAD10," chr12~chr12 69140559 112184853 71 ++ 2.977636 72 29 39 72 260 TCGA-DX-A48N-01A-11R-A30C-07 SLC41A2~DNM3 fusion "SLC41A2," "DNM3," chr12~chr1 105289052 172100315 11 -+ 1.84622 6 0 6 6 30 TCGA-DX-A48N-01A-11R-A30C-07 SLC41A2~DNM3 fusion "SLC41A2," "DNM3," chr12~chr1 105280071 172100315 19 -+ 2.159732 14 2 12 14 40 TCGA-DX-A48N-01A-11R-A30C-07 SLC41A2~MYF5 fusion "SLC41A2," "MYF5," chr12~chr12 105238250 81110819 7 -+ 1.277034 7 3 4 7 54 TCGA-DX-A48N-01A-11R-A30C-07 SLC41A2~MYF6 fusion "SLC41A2," "MYF6," chr12~chr12 105238250 81101634 85 -+ 2.724827 84 29 54 84 322 TCGA-DX-A48N-01A-11R-A30C-07 SLC41A2~Nchr12~81092768 intergenic "SLC41A2," "-," chr12~chr12 105227869 81092768 7 -+ 1.747868 6 3 3 6 254 TCGA-DX-A48N-01A-11R-A30C-07 SLC41A2~Nchr12~81092768 intergenic "SLC41A2," "-," chr12~chr12 105238250 81092768 82 -+ 3.114069 81 38 43 81 256 TCGA-DX-A48N-01A-11R-A30C-07 SLC41A2~Nchr19~19063653 intergenic "SLC41A2," "-," chr12~chr19 105206556 19063653 12 +- 1.979205 10 7 3 10 30 TCGA-DX-A48N-01A-11R-A30C-07 SMARCA4~BRD4 fusion "SMARCA4," "BRD4," chr19~chr19 11071850 15367984 3 +- 1.098612 3 0 3 3 2 TCGA-DX-A48N-01A-11R-A30C-07 STXBP5~Nchr11~23673864 intergenic "STXBP5," "-," chr6~chr11 147655358 23673864 5 ++ 1.05492 5 0 5 5 6 TCGA-DX-A48N-01A-11R-A30C-07 SWT1~GLT25D2 fusion "SWT1," "GLT25D2," chr1~chr1 185200840 183947654 10 +- 2.163956 9 6 3 9 48 TCGA-DX-A48N-01A-11R-A30C-07 TAB2~Nchr6~140705515 intergenic "TAB2," "-," chr6~chr6 149691235 140705515 5 +- 1.332179 5 0 5 5 2 TCGA-DX-A48N-01A-11R-A30C-07 TAB2~Nchr6~140764803 intergenic "TAB2," "-," chr6~chr6 149691235 140764803 13 +- 2.098147 10 4 6 10 38 TCGA-DX-A48N-01A-11R-A30C-07 TAB2~Nchr6~140767475 intergenic "TAB2," "-," chr6~chr6 149691235 140767475 6 +- 1.098612 6 4 2 6 52 TCGA-DX-A48N-01A-11R-A30C-07 TMEM2~HMCN1 fusion "TMEM2," "HMCN1," chr9~chr1 74309425 185878469 7 -+ 1.153742 7 1 6 7 18 TCGA-DX-A48N-01A-11R-A30C-07 TMEM2~TRPM3 fusion "TMEM2," "TRPM3," chr9~chr9 74383273 73479427 6 -- 1.329661 6 4 2 6 46 TCGA-DX-A48N-01A-11R-A30C-07 TMTC1~Nchr12~69800940 intergenic "TMTC1," "-," chr12~chr12 29709790 69800940 30 -+ 2.534538 25 12 13 25 112 TCGA-DX-A48N-01A-11R-A30C-07 TMTC1~Nchr12~69817781 intergenic "TMTC1," "-," chr12~chr12 29709790 69817781 6 -+ 1.791759 5 1 4 5 38 TCGA-DX-A48N-01A-11R-A30C-07 TMTC1~YEATS4 fusion "TMTC1," "YEATS4," chr12~chr12 29709790 69783927 19 -+ 2.276423 20 6 13 20 130 TCGA-DX-A48N-01A-11R-A30C-07 TMTC2~GNA14 fusion "TMTC2," "GNA14," chr12~chr9 83290425 80144169 165 +- 2.949511 148 96 50 148 490 TCGA-DX-A48N-01A-11R-A30C-07 TMTC2~RP1-34H18.1 fusion "TMTC2," "RP1-34H18.1," chr12~chr12 83379825 77965639 2 ++ 0.693147 2 1 1 2 18 TCGA-DX-A48N-01A-11R-A30C-07 TMTC2~RP1-97G4.1 fusion "TMTC2," "RP1-97G4.1," chr12~chr12 83290425 77784251 36 ++ 2.856207 34 29 5 34 196 TCGA-DX-A48N-01A-11R-A30C-07 TPD52L2~RP11-203L2.4 fusion "TPD52L2," "RP11-203L2.4," chr20~chr9 62519240 71454146 6 +- 1.329661 6 2 4 6 52 TCGA-DX-A48N-01A-11R-A30C-07 TSPAN31~SLC41A2 fusion "TSPAN31,CDK4," "SLC41A2," chr12~chr12 58142322 105322472 3 -- 0.636514 3 2 1 3 8 TCGA-DX-A48N-01A-11R-A30C-07 TTLL5~TCP11L2 fusion "TTLL5," "TCP11L2," chr14~chr12 76219298 106734604 3 ++ 1.098612 3 2 1 3 6 TCGA-DX-A48N-01A-11R-A30C-07 TXNRD1~Nchr12~74757998 intergenic "TXNRD1," "-," chr12~chr12 104733051 74757998 9 ++ 1.735126 9 7 2 9 32 TCGA-DX-A48N-01A-11R-A30C-07 TXNRD1~SLC41A2 fusion "TXNRD1," "SLC41A2," chr12~chr12 104721449 105239752 26 +- 2.431131 26 7 19 26 126 TCGA-DX-A48N-01A-11R-A30C-07 UBQLN1~NAV3 fusion "UBQLN1," "NAV3," chr9~chr12 86322415 78392117 7 -+ 1.94591 7 4 3 7 12 TCGA-DX-A48N-01A-11R-A30C-07 UTRN~GS1-204I12.1 fusion "UTRN," "GS1-204I12.1," chr6~chr1 144820563 185576533 3 +- 0.636514 3 2 1 3 4 TCGA-DX-A48N-01A-11R-A30C-07 UTRN~GS1-204I12.1 fusion "UTRN," "GS1-204I12.1," chr6~chr1 144820563 185595687 9 +- 1.889159 6 1 5 6 14 TCGA-DX-A48N-01A-11R-A30C-07 UTRN~Nchr1~185523071 intergenic "UTRN," "-," chr6~chr1 144820563 185523071 5 +- 1.332179 5 1 4 5 10 TCGA-DX-A48N-01A-11R-A30C-07 UTRN~OSTF1 fusion "UTRN," "OSTF1," chr6~chr9 145051622 77732420 10 ++ 1.695743 10 1 9 10 52 TCGA-DX-A48N-01A-11R-A30C-07 VPS13A~Nchr1~187044260 intergenic "VPS13A," "-," chr9~chr1 79867268 187044260 8 +- 1.667462 8 2 6 8 28 TCGA-DX-A48N-01A-11R-A30C-07 VPS13A~Nchr1~187052797 intergenic "VPS13A," "-," chr9~chr1 79867268 187052797 10 +- 2.163956 10 3 7 10 62 TCGA-DX-A48N-01A-11R-A30C-07 VPS13A~Nchr9~74279992 intergenic "VPS13A," "-," chr9~chr9 79923014 74279992 33 +- 2.693672 33 13 18 33 56 TCGA-DX-A48N-01A-11R-A30C-07 WDR19~Nchr6~145613507 intergenic "WDR19," "-," chr4~chr6 39201213 145613507 15 +- 2.338372 15 7 8 15 68 TCGA-DX-A48N-01A-11R-A30C-07 WDR19~Nchr6~145613706 intergenic "WDR19," "-," chr4~chr6 39201213 145613706 56 +- 3.114989 83 38 16 83 122 TCGA-DX-A48N-01A-11R-A30C-07 ZNF407~CYB5A fusion "ZNF407," "CYB5A," chr18~chr18 72353078 71923010 3 +- 1.098612 3 2 1 3 30 TCGA-DX-A48N-01A-11R-A30C-07 ZNF493~RP11-745O10.4 fusion "ZNF493," "TMBIM4,RP11-745O10.4,TMBIM4," chr19~chr12 21580069 66547228 7 +- 1.549826 7 6 1 7 42 TCGA-DX-A48N-01A-11R-A30C-07 ZNF493~RP11-745O10.4 fusion "ZNF493," "TMBIM4,RP11-745O10.4,TMBIM4," chr19~chr12 21588658 66547228 7 +- 1.549826 7 5 2 7 82 TCGA-DX-A48N-01A-11R-A30C-07 ZNF493~RP11-745O10.4 fusion "ZNF493," "TMBIM4,RP11-745O10.4,TMBIM4," chr19~chr12 21596451 66547228 12 +- 1.991509 13 7 5 13 34 TCGA-DX-A6B7-01A-11R-A30C-07 A2M~PCSK7 fusion "A2M," "TAGLN,PCSK7,TAGLN," chr12~chr11 9230011 117075248 5 -- 1.609438 5 4 1 5 4 TCGA-DX-A6B7-01A-11R-A30C-07 FLNA~MYL9 fusion "FLNA," "MYL9," chrX~chr20 153578156 35177880 2 -+ 0.693147 1 0 1 1 4 TCGA-DX-A6B7-01A-11R-A30C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 43 -- 2.117149 42 42 0 42 102 TCGA-DX-A6B7-01A-11R-A30C-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 149 -- 2.436533 89 17 68 89 20 TCGA-DX-A6B7-01A-11R-A30C-07 MYH11~Nchr6~74083019 intergenic "MYH11," "-," chr16~chr6 15808938 74083019 2 +- 0.693147 2 2 0 2 20 TCGA-DX-A6B7-01A-11R-A30C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 69 -+ 2.409595 25 0 25 25 24 TCGA-DX-A6B7-01A-11R-A30C-07 Nchr14~45066112~Nchr14~44862941 intergenic "-," "-," chr14~chr14 45066112 44862941 3 -- 1.098612 1 1 0 1 4 TCGA-DX-A6B7-01A-11R-A30C-07 Nchr16~79619777~Nchr16~79246798 intergenic "-," "-," chr16~chr16 79619777 79246798 2 -- 0.693147 2 1 1 2 2 TCGA-DX-A6B7-01A-11R-A30C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 38 -+ 2.787036 35 14 21 35 496 TCGA-DX-A6B7-01A-11R-A30C-07 Nchr2~74380071~Nchr2~74380198 intergenic "-," "-," chr2~chr2 74380071 74380198 4 -- 1.039721 4 0 4 4 2 TCGA-DX-A6B7-01A-11R-A30C-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 15 ++ 1.93381 14 14 0 14 8 TCGA-DX-A6B7-01A-11R-A30C-07 Nchr6~29856480~HLA-B intergenic "-," "HLA-B," chr6~chr6 29856480 31324034 4 -- 1.039721 1 1 0 1 74 TCGA-DX-A6B7-01A-11R-A30C-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40768381 9 ++ 1.83102 3 0 3 3 10 TCGA-DX-A6B7-01A-11R-A30C-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 244 ++ 2.792411 6 1 5 6 8 TCGA-DX-A6B7-01A-11R-A30C-07 RPA1~GUCY2D fusion "RPA1," "GUCY2D," chr17~chr17 1733420 7907103 3 ++ 0.636514 2 0 2 2 2 TCGA-DX-A6B7-01A-11R-A30C-07 RPA1~GUCY2D fusion "RPA1," "GUCY2D," chr17~chr17 1733420 7909681 2 ++ 0.693147 2 1 1 2 6 TCGA-DX-A3UD-01A-11R-A30C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238905 31324034 5 -- 1.791759 5 4 0 5 132 TCGA-DX-A3UD-01A-11R-A30C-07 Nchr11~65190712~Nchr11~65190684 intergenic "-," "-," chr11~chr11 65190712 65190684 2 ++ 0.693147 2 2 0 2 6 TCGA-DX-A3UD-01A-11R-A30C-07 Nchr15~21916043~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21916043 20876597 2 -- 0.693147 1 0 1 1 26 TCGA-DX-A3UD-01A-11R-A30C-07 Nchr15~55105551~UNC13C intergenic "-," "UNC13C," chr15~chr15 55105551 54777398 5 -- 1.332179 5 1 4 5 8 TCGA-DX-A3UD-01A-11R-A30C-07 Nchr15~55155259~UNC13C intergenic "-," "UNC13C," chr15~chr15 55155259 54777398 4 -- 1.386294 4 2 2 4 6 TCGA-DX-A3UD-01A-11R-A30C-07 Nchr15~55155511~UNC13C intergenic "-," "UNC13C," chr15~chr15 55155511 54908457 2 -- 0.693147 2 0 2 2 2 TCGA-DX-A3UD-01A-11R-A30C-07 Nchr17~17286794~Nchr17~17286935 intergenic "-," "-," chr17~chr17 17286794 17286935 3 -- 0.636514 3 0 3 3 4 TCGA-DX-A3UD-01A-11R-A30C-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 3 ++ 1.098612 3 0 3 3 18 TCGA-DX-A3UD-01A-11R-A30C-07 Nchr3~59556125~FHIT intergenic "-," "FHIT," chr3~chr3 59556125 59795458 4 ++ 1.039721 4 0 4 4 32 TCGA-DX-A3UD-01A-11R-A30C-07 Nchr4~15338535~RP11-665G4.1 intergenic "-," "RP11-665G4.1," chr4~chr4 15338535 15019505 5 -- 1.609438 4 4 0 4 8 TCGA-DX-A3UD-01A-11R-A30C-07 Nchr4~15418195~RP11-665G4.1 intergenic "-," "RP11-665G4.1," chr4~chr4 15418195 15019505 4 -- 1.039721 4 3 1 4 10 TCGA-DX-A3UD-01A-11R-A30C-07 Nchr7~110514869~IMMP2L intergenic "-," "IMMP2L," chr7~chr7 110514869 110303777 9 -- 1.889159 9 6 3 9 88 TCGA-DX-A3UD-01A-11R-A30C-07 Nchr7~122858538~Nchr7~123096679 intergenic "-," "-," chr7~chr7 122858538 123096679 3 ++ 1.098612 1 0 1 1 2 TCGA-DX-A3UD-01A-11R-A30C-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40768381 12 ++ 1.979205 5 0 5 5 18 TCGA-DX-A3UD-01A-11R-A30C-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 198 ++ 3.046345 20 2 18 20 16 TCGA-DX-A3UD-01A-11R-A30C-07 NchrX~33744619~NchrX~33428291 intergenic "-," "-," chrX~chrX 33744619 33428291 2 -- 0.693147 2 1 1 2 8 TCGA-DX-A3UD-01A-11R-A30C-07 RP11-21C17.1~RP11-600K15.1 fusion "RP11-21C17.1," "RP11-600K15.1," chr8~chr8 70090350 69836730 10 -- 1.886697 6 5 1 6 8 TCGA-DX-A3UD-01A-11R-A30C-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 2 ++ 0.693147 2 1 1 2 12 TCGA-DX-A3UD-01A-11R-A30C-07 VCL~C10orf11 fusion "VCL," "C10orf11," chr10~chr10 75860855 78316967 9 ++ 1.676988 9 6 3 9 28 TCGA-DX-A3UC-01A-11R-A30C-07 KDM6A~RPS6KA3 fusion "KDM6A," "RPS6KA3," chrX~chrX 44950109 20252932 7 +- 1.94591 5 2 3 5 24 TCGA-DX-A3UC-01A-11R-A30C-07 MYH11~FOPNL fusion "MYH11," "FOPNL," chr16~chr16 15826421 15973745 3 -- 1.098612 3 3 0 3 4 TCGA-DX-A3UC-01A-11R-A30C-07 MYH11~FOPNL fusion "MYH11," "FOPNL," chr16~chr16 15826421 15978062 4 -- 1.039721 4 2 2 4 30 TCGA-DX-A3UC-01A-11R-A30C-07 MYH11~Nchr16~15998518 intergenic "MYH11," "-," chr16~chr16 15829223 15998518 5 -- 1.609438 5 5 0 5 24 TCGA-DX-A3UC-01A-11R-A30C-07 MYH11~Nchr16~15998518 intergenic "MYH11," "-," chr16~chr16 15826421 15998518 58 -- 2.830069 53 33 18 53 172 TCGA-DX-A3UC-01A-11R-A30C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 52 -+ 2.279134 24 0 24 24 14 TCGA-DX-A3UC-01A-11R-A30C-07 Nchr19~28296278~SLC25A1 intergenic "-," "SLC25A1," chr19~chr22 28296278 19163589 29 ++ 1.505833 15 0 15 15 2 TCGA-DX-A3UC-01A-11R-A30C-07 RP11-69I8.3~Nchr6~132395933 intergenic "RP11-69I8.3,CTGF," "-," chr6~chr6 132272394 132395933 3 ++ 0.636514 2 0 2 2 6 TCGA-DX-A3UC-01A-11R-A30C-07 RPS6KA3~KDM6A fusion "RPS6KA3," "KDM6A," chrX~chrX 20284682 44966655 36 -+ 2.329704 36 0 36 36 70 TCGA-DX-A3UC-01A-11R-A30C-07 RPS6KA3~KDM6A fusion "RPS6KA3," "KDM6A," chrX~chrX 20258687 44966655 3 -+ 1.098612 3 1 2 3 70 TCGA-DX-A48O-01A-11R-A30C-07 AC016629.2~Nchr17~12921961 intergenic "AC016629.2," "-," chr19~chr17 59086955 12921961 4 +- 1.039721 4 4 0 4 90 TCGA-DX-A48O-01A-11R-A30C-07 GIGYF2~EEF1B2 fusion "GIGYF2," "EEF1B2," chr2~chr2 233594854 207024743 3 ++ 1.098612 2 1 1 2 2 TCGA-DX-A48O-01A-11R-A30C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 74 -- 2.399114 74 74 0 74 90 TCGA-DX-A48O-01A-11R-A30C-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 314 -- 2.518936 142 24 118 142 2 TCGA-DX-A48O-01A-11R-A30C-07 MAN1C1~Nchr5~142124147 intergenic "MAN1C1," "-," chr1~chr5 26080069 142124147 3 +- 0.636514 3 1 2 3 6 TCGA-DX-A48O-01A-11R-A30C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 57 -+ 2.364954 27 0 27 27 24 TCGA-DX-A48O-01A-11R-A30C-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 5 ++ 0.950271 4 1 3 4 32 TCGA-DX-A48O-01A-11R-A30C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 36 -+ 2.76081 34 17 17 34 294 TCGA-DX-A48O-01A-11R-A30C-07 RP11-371M22.1~Nchr5~113696642 intergenic "RP11-371M22.1," "-," chr5~chr5 113392868 113696642 3 ++ 1.098612 3 2 1 3 6 TCGA-DX-A48O-01A-11R-A30C-07 RPS24~STON2 fusion "RPS24," "STON2," chr10~chr14 79797062 81799310 38 +- 1.541281 17 17 0 17 2 TCGA-DX-A48O-01A-11R-A30C-07 TPM2~ACTG1 fusion "TPM2," "ACTG1," chr9~chr17 35685061 79478652 7 -- 1.747868 7 3 4 7 20 TCGA-DX-A48O-01A-11R-A30C-07 TPM2~MYL6 fusion "TPM2," "MYL6," chr9~chr12 35685061 56555171 3 -+ 1.098612 3 1 2 3 2 TCGA-DX-A48O-01A-11R-A30C-07 TTC7A~Nchr16~88813963 intergenic "TTC7A," "-," chr2~chr16 47233863 88813963 4 ++ 1.039721 4 1 3 4 42 TCGA-DX-A3U9-01A-11R-A30C-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189867788 94056939 2 ++ 0.693147 2 1 1 2 4 TCGA-DX-A3U9-01A-11R-A30C-07 COL4A2~FLNA fusion "COL4A2," "FLNA," chr13~chrX 111164924 153588448 2 +- 0.693147 2 0 2 2 2 TCGA-DX-A3U9-01A-11R-A30C-07 COL8A1~C3orf26 fusion "COL8A1," "C3orf26," chr3~chr3 99513226 99865817 6 ++ 1.56071 6 5 1 6 16 TCGA-DX-A3U9-01A-11R-A30C-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 8 -- 0.974315 5 2 3 5 2 TCGA-DX-A3U9-01A-11R-A30C-07 KCNMA1~Nchr10~92783010 intergenic "KCNMA1," "-," chr10~chr10 78943179 92783010 2 -+ 0.693147 2 0 2 2 6 TCGA-DX-A3U9-01A-11R-A30C-07 KCNMA1~Nchr10~92799110 intergenic "KCNMA1," "-," chr10~chr10 78943179 92799110 3 -+ 1.098612 3 2 1 3 36 TCGA-DX-A3U9-01A-11R-A30C-07 NMT1~Nchr17~10983992 intergenic "NMT1," "-," chr17~chr17 43164020 10983992 33 ++ 2.411596 32 10 22 32 154 TCGA-DX-A3U9-01A-11R-A30C-07 NMT1~Nchr17~10995160 intergenic "NMT1," "-," chr17~chr17 43164020 10995160 18 ++ 2.183187 16 3 13 16 116 TCGA-DX-A3U9-01A-11R-A30C-07 NMT1~Nchr17~10997101 intergenic "NMT1," "-," chr17~chr17 43164020 10997101 2 ++ 0.693147 2 0 2 2 6 TCGA-DX-A3U9-01A-11R-A30C-07 NRIP1~AF127936.7 fusion "NRIP1," "AF127936.7," chr21~chr21 16437066 16230029 4 -- 1.039721 4 4 0 4 4 TCGA-DX-A3U9-01A-11R-A30C-07 Nchr11~27603266~RPS25 intergenic "-," "RPS25," chr11~chr11 27603266 118888759 2 -- 0.693147 1 0 1 1 26 TCGA-DX-A3U9-01A-11R-A30C-07 Nchr11~67450403~RPL37 intergenic "-," "RPL37," chr11~chr5 67450403 40834351 3 ++ 0.636514 2 0 2 2 14 TCGA-DX-A3U9-01A-11R-A30C-07 Nchr15~55155259~UNC13C intergenic "-," "UNC13C," chr15~chr15 55155259 54908457 2 -- 0.693147 2 0 2 2 2 TCGA-DX-A3U9-01A-11R-A30C-07 Nchr19~44915623~ZNF595 intergenic "-," "ZNF595," chr19~chr4 44915623 54236 6 -- 0.450561 6 0 6 6 8 TCGA-DX-A3U9-01A-11R-A30C-07 Nchr3~187872040~LPP intergenic "-," "LPP," chr3~chr3 187872040 188123900 7 ++ 1.475076 6 0 6 6 2 TCGA-DX-A3U9-01A-11R-A30C-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40768381 12 ++ 1.632631 9 0 9 9 10 TCGA-DX-A3U9-01A-11R-A30C-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 274 ++ 2.900402 26 5 21 26 8 TCGA-DX-A3U9-01A-11R-A30C-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40899915 4 ++ 1.039721 4 0 4 4 78 TCGA-DX-A3U9-01A-11R-A30C-07 Nchr9~17906920~Nchr9~18163860 intergenic "-," "-," chr9~chr9 17906920 18163860 4 ++ 1.386294 3 3 0 3 8 TCGA-DX-A3U9-01A-11R-A30C-07 Nchr9~29212920~Nchr9~28947912 intergenic "-," "-," chr9~chr9 29212920 28947912 13 -- 2.245035 5 0 5 5 10 TCGA-DX-A3U9-01A-11R-A30C-07 NchrX~25540982~NchrX~25837303 intergenic "-," "-," chrX~chrX 25540982 25837303 6 ++ 1.791759 5 3 2 5 12 TCGA-DX-A3U9-01A-11R-A30C-07 NchrX~25566342~NchrX~25837303 intergenic "-," "-," chrX~chrX 25566342 25837303 2 ++ 0.693147 1 1 0 1 6 TCGA-DX-A3U9-01A-11R-A30C-07 PFKP~Nchr10~3502149 intergenic "PFKP," "-," chr10~chr10 3124653 3502149 3 ++ 0.636514 3 1 2 3 6 TCGA-DX-A3U9-01A-11R-A30C-07 PFKP~Nchr10~3509899 intergenic "PFKP," "-," chr10~chr10 3124653 3509899 5 ++ 1.332179 5 0 5 5 254 TCGA-DX-A3U9-01A-11R-A30C-07 PFKP~Nchr10~3525991 intergenic "PFKP," "-," chr10~chr10 3124653 3525991 6 ++ 1.329661 6 0 6 6 236 TCGA-DX-A3U9-01A-11R-A30C-07 PFKP~Nchr10~3564742 intergenic "PFKP," "-," chr10~chr10 3124653 3564742 2 ++ 0.693147 2 0 2 2 4 TCGA-DX-A3U9-01A-11R-A30C-07 PFKP~Nchr10~3627695 intergenic "PFKP," "-," chr10~chr10 3124653 3627695 3 ++ 0.636514 2 0 2 2 8 TCGA-DX-A3U9-01A-11R-A30C-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 3 ++ 0.636514 3 1 2 3 20 TCGA-DX-A3UA-01A-12R-A30C-07 AC016710.1~Nchr2~140458772 intergenic "AC016710.1," "-," chr2~chr2 140227424 140458772 3 ++ 1.098612 1 0 1 1 6 TCGA-DX-A3UA-01A-12R-A30C-07 AGMO~Nchr7~15199088 intergenic "AGMO," "-," chr7~chr7 15405139 15199088 8 -- 1.732868 7 0 7 7 38 TCGA-DX-A3UA-01A-12R-A30C-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 2 +- 0.693147 2 1 1 2 10 TCGA-DX-A3UA-01A-12R-A30C-07 FGF14~Nchr13~102845713 intergenic "RP11-347N5.2,FGF14," "-," chr13~chr13 103053821 102845713 9 -- 1.735126 9 8 1 9 10 TCGA-DX-A3UA-01A-12R-A30C-07 GOLIM4~Nchr4~138656152 intergenic "GOLIM4," "-," chr3~chr4 167812887 138656152 15 -- 2.430791 10 9 1 10 28 TCGA-DX-A3UA-01A-12R-A30C-07 HNRNPUL1~Nchr21~30798592 intergenic "HNRNPUL1," "-," chr19~chr21 41787180 30798592 17 +- 2.42548 16 11 5 16 26 TCGA-DX-A3UA-01A-12R-A30C-07 ITSN1~HNRNPUL1 fusion "ITSN1," "HNRNPUL1," chr21~chr19 35127702 41808570 12 ++ 2.022809 12 9 3 12 72 TCGA-DX-A3UA-01A-12R-A30C-07 MECOM~CD86 fusion "MECOM," "CD86," chr3~chr3 169381124 121810448 4 -+ 1.386294 4 4 0 4 20 TCGA-DX-A3UA-01A-12R-A30C-07 NPHP3~ABCE1 fusion "ACAD11,ACAD11,NPHP3," "ABCE1," chr3~chr4 132360816 146025538 12 -+ 2.094729 12 6 6 12 20 TCGA-DX-A3UA-01A-12R-A30C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 59 -+ 2.365927 18 0 18 18 26 TCGA-DX-A3UA-01A-12R-A30C-07 Nchr14~38803320~CTD-2058B24.1 intergenic "-," "CTD-2058B24.1," chr14~chr14 38803320 38508635 9 -- 1.735126 6 2 4 6 40 TCGA-DX-A3UA-01A-12R-A30C-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 3 ++ 1.098612 2 0 2 2 2 TCGA-DX-A3UA-01A-12R-A30C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 8 -+ 2.079442 8 8 0 8 138 TCGA-DX-A3UA-01A-12R-A30C-07 Nchr3~146464432~RP11-649A16.1 intergenic "-," "RP11-649A16.1," chr3~chr3 146464432 146891143 3 ++ 1.098612 3 3 0 3 26 TCGA-DX-A3UA-01A-12R-A30C-07 Nchr3~146467210~RP11-649A16.1 intergenic "-," "RP11-649A16.1," chr3~chr3 146467210 146891143 5 ++ 1.609438 4 3 1 4 12 TCGA-DX-A3UA-01A-12R-A30C-07 Nchr3~27054332~LRRC3B intergenic "-," "LRRC3B," chr3~chr3 27054332 26715443 15 -- 2.245952 12 5 7 12 124 TCGA-DX-A3UA-01A-12R-A30C-07 Nchr3~27065268~LRRC3B intergenic "-," "LRRC3B," chr3~chr3 27065268 26715443 34 -- 2.769619 32 31 1 32 98 TCGA-DX-A3UA-01A-12R-A30C-07 Nchr3~27117335~LRRC3B intergenic "-," "LRRC3B," chr3~chr3 27117335 26715443 2 -- 0.693147 2 2 0 2 124 TCGA-DX-A3UA-01A-12R-A30C-07 Nchr3~82005505~Nchr3~82234503 intergenic "-," "-," chr3~chr3 82005505 82234503 3 ++ 1.098612 3 2 1 3 6 TCGA-DX-A3UA-01A-12R-A30C-07 PAPSS1~Nchr3~136732968 intergenic "PAPSS1," "-," chr4~chr3 108603171 136732968 4 -- 1.039721 4 1 3 4 10 TCGA-DX-A3UA-01A-12R-A30C-07 PAPSS1~Nchr3~136739394 intergenic "PAPSS1," "-," chr4~chr3 108603171 136739394 6 -- 1.791759 6 4 2 6 40 TCGA-DX-A3UA-01A-12R-A30C-07 PAPSS1~Nchr3~136744147 intergenic "PAPSS1," "-," chr4~chr3 108603171 136744147 21 -- 2.293452 21 9 12 21 74 TCGA-DX-A3UA-01A-12R-A30C-07 PPA2~C4orf37 fusion "PPA2," "C4orf37," chr4~chr4 106395051 98902469 2 -- 0.693147 2 2 0 2 8 TCGA-DX-A3UA-01A-12R-A30C-07 PPP3CA~HMGXB3 fusion "PPP3CA," "HMGXB3," chr4~chr5 102267896 149406269 4 -+ 1.386294 3 2 1 3 10 TCGA-DX-A3UA-01A-12R-A30C-07 RP11-23D24.2~TNIK fusion "RP11-23D24.2," "TNIK," chr3~chr3 153322435 170858298 8 -- 1.559581 6 0 6 6 6 TCGA-DX-A3UA-01A-12R-A30C-07 RP13-884E18.4~CLDN11 fusion "RP13-884E18.4," "SLC7A14,CLDN11," chr4~chr3 138613395 170185165 4 -- 1.386294 3 2 1 3 6 TCGA-DX-A3UA-01A-12R-A30C-07 SEC61A1~INPP4B fusion "SEC61A1," "INPP4B," chr3~chr4 127786902 142950067 60 +- 2.640034 60 48 12 60 148 TCGA-DX-A3UA-01A-12R-A30C-07 SEC61A1~INPP4B fusion "SEC61A1," "INPP4B," chr3~chr4 127789549 142950067 25 +- 2.396762 25 15 10 25 70 TCGA-DX-A3UA-01A-12R-A30C-07 SETD7~NPHP3 fusion "SETD7," "ACAD11,NPHP3," chr4~chr3 140439039 132363740 14 -- 2.341994 13 5 8 13 44 TCGA-DX-A3UA-01A-12R-A30C-07 STAG1~RP11-23D24.2 fusion "STAG1," "RP11-23D24.2," chr3~chr3 136471037 153322534 11 -- 2.145842 1 1 0 1 12 TCGA-DX-A3UA-01A-12R-A30C-07 TPM3~NTRK1 fusion "TPM3," "NTRK1," chr1~chr1 154142876 156845312 58 -+ 3.045892 53 15 38 53 188 TCGA-DX-A3UA-01A-12R-A30C-07 TPM3~NTRK1 fusion "TPM3," "NTRK1," chr1~chr1 154142876 156845872 28 -+ 2.648721 24 12 12 24 92 TCGA-DX-A3UA-01A-12R-A30C-07 ZNF283~CEACAMP3 fusion "ZNF283," "CEACAMP3," chr19~chr19 44339744 42108857 9 ++ 1.427061 8 4 4 8 46 TCGA-DX-A3UA-01A-12R-A30C-07 ZNF283~CEACAMP3 fusion "ZNF283," "CEACAMP3," chr19~chr19 44339744 42110519 4 ++ 1.386294 3 1 2 3 26 TCGA-DX-A3UA-01A-12R-A30C-07 ZNF606~LRP3 fusion "CTD-2368P22.1,ZNF606,CTD-2368P22.1," "LRP3," chr19~chr19 58514414 33687636 8 ++ 2.079442 8 8 0 8 62 TCGA-DX-A3UA-01A-12R-A30C-07 ZNF83~ZNF471 fusion "ZNF83," "ZNF471," chr19~chr19 53158814 57035693 2 -+ 0.693147 2 1 1 2 2 TCGA-DX-A48L-01A-11R-A30C-07 A2LD1~INCA1 fusion "A2LD1," "INCA1," chr13~chr17 101236079 4893560 5 -- 1.609438 4 2 2 4 24 TCGA-DX-A48L-01A-11R-A30C-07 A2LD1~INCA1 fusion "A2LD1," "INCA1," chr13~chr17 101236079 4897770 3 -- 1.098612 3 0 3 3 32 TCGA-DX-A48L-01A-11R-A30C-07 AC069513.3~Nchr13~111490563 intergenic "AC069513.3," "-," chr3~chr13 195435712 111490563 3 ++ 0.636514 3 1 2 3 14 TCGA-DX-A48L-01A-11R-A30C-07 ATG9A~DHX33 fusion "ABCB6,ATG9A,ABCB6," "DHX33," chr2~chr17 220074553 5367009 5 -- 0.500402 5 0 5 5 8 TCGA-DX-A48L-01A-11R-A30C-07 C17orf49~STK39 fusion "C17orf49,AC040977.1,C17orf49,AC040977.1,C17orf49,AC040977.1,C17orf49,AC040977.1," "STK39," chr17~chr2 6918475 169018352 7 +- 1.153742 6 5 1 6 28 TCGA-DX-A48L-01A-11R-A30C-07 DERL2~Nchr2~225501689 intergenic "DERL2," "-," chr17~chr2 5383374 225501689 4 -- 1.039721 4 1 3 4 2 TCGA-DX-A48L-01A-11R-A30C-07 DERL2~Nchr2~225511731 intergenic "DERL2," "-," chr17~chr2 5383374 225511731 14 -- 2.044931 14 6 8 14 44 TCGA-DX-A48L-01A-11R-A30C-07 DHX33~KIF1C fusion "DHX33," "KIF1C," chr17~chr17 5371891 4918038 6 -+ 1.56071 3 1 2 3 18 TCGA-DX-A48L-01A-11R-A30C-07 FXR2~Nchr17~5138243 intergenic "FXR2," "-," chr17~chr17 7504727 5138243 2 -+ 0.693147 2 0 2 2 12 TCGA-DX-A48L-01A-11R-A30C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31237789 31322953 2 -- 0.693147 1 1 0 1 4 TCGA-DX-A48L-01A-11R-A30C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 77 -- 2.008902 77 77 0 77 194 TCGA-DX-A48L-01A-11R-A30C-07 HOOK3~Nchr8~43706475 intergenic "HOOK3," "-," chr8~chr8 42761401 43706475 6 ++ 1.242453 5 2 3 5 16 TCGA-DX-A48L-01A-11R-A30C-07 IQCA1~Nchr2~7753995 intergenic "IQCA1," "-," chr2~chr2 237233175 7753995 11 -+ 1.84622 11 8 3 11 26 TCGA-DX-A48L-01A-11R-A30C-07 KIF1C~Nchr2~11578331 intergenic "KIF1C," "-," chr17~chr2 4918132 11578331 5 ++ 1.609438 2 2 0 2 20 TCGA-DX-A48L-01A-11R-A30C-07 KIF1C~Nchr2~624436 intergenic "KIF1C," "-," chr17~chr2 4918132 624436 6 +- 1.56071 4 2 2 4 8 TCGA-DX-A48L-01A-11R-A30C-07 NOP56~Nchr12~79952582 intergenic "NOP56,NOP56," "-," chr20~chr12 2637857 79952582 3 ++ 1.098612 1 0 1 1 2 TCGA-DX-A48L-01A-11R-A30C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 33 -+ 2.28001 18 0 18 18 6 TCGA-DX-A48L-01A-11R-A30C-07 Nchr12~20342377~PDE3A intergenic "-," "PDE3A," chr12~chr12 20342377 20709594 14 ++ 2.044931 10 10 0 10 4 TCGA-DX-A48L-01A-11R-A30C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 11 -+ 2.145842 11 3 8 11 110 TCGA-DX-A48L-01A-11R-A30C-07 Nchr2~37853696~FAM82A1 intergenic "-," "FAM82A1," chr2~chr2 37853696 38208426 6 ++ 1.791759 6 0 6 6 30 TCGA-DX-A48L-01A-11R-A30C-07 Nchr6~29894282~HLA-B intergenic "-," "HLA-B," chr6~chr6 29894282 31324734 2 -- 0.693147 1 1 0 1 76 TCGA-DX-A48L-01A-11R-A30C-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 60 ++ 2.677975 5 0 5 5 4 TCGA-DX-A48L-01A-11R-A30C-07 NchrX~121758928~NchrX~121220812 intergenic "-," "-," chrX~chrX 121758928 121220812 2 -- 0.693147 1 1 0 1 4 TCGA-DX-A48L-01A-11R-A30C-07 PPP6R3~Nchr11~55122784 intergenic "PPP6R3," "-," chr11~chr11 68305359 55122784 8 +- 1.906155 8 2 6 8 24 TCGA-DX-A48L-01A-11R-A30C-07 PPP6R3~RP11-881M11.2 fusion "PPP6R3," "RP11-881M11.2," chr11~chr11 68305359 60676899 2 ++ 0.693147 2 2 0 2 2 TCGA-DX-A48L-01A-11R-A30C-07 RABEP1~Nchr13~111497116 intergenic "RABEP1," "-," chr17~chr13 5271763 111497116 2 +- 0.693147 2 1 1 2 2 TCGA-DX-A48L-01A-11R-A30C-07 RP11-534G20.3~Nchr11~68808039 intergenic "RP11-534G20.3," "-," chr10~chr11 29709590 68808039 2 ++ 0.693147 2 1 1 2 16 TCGA-DX-A48L-01A-11R-A30C-07 RP11-534G20.3~Nchr11~68808039 intergenic "RP11-534G20.3," "-," chr10~chr11 29704341 68808039 2 ++ 0.693147 1 1 0 1 24 TCGA-DX-A48L-01A-11R-A30C-07 RP11-534G20.3~TPCN2 fusion "RP11-534G20.3," "TPCN2," chr10~chr11 29704341 68821501 6 ++ 1.791759 6 3 3 6 26 TCGA-DX-A48L-01A-11R-A30C-07 RP11-725K16.4~Nchr11~102919143 intergenic "RP11-725K16.4," "-," chr11~chr11 102703637 102919143 5 ++ 1.332179 4 4 0 4 14 TCGA-DX-A48L-01A-11R-A30C-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 4 ++ 1.386294 4 3 1 4 22 TCGA-DX-A48L-01A-11R-A30C-07 STK39~Nchr2~237807490 intergenic "STK39," "-," chr2~chr2 169013252 237807490 6 -+ 1.791759 6 4 2 6 20 TCGA-DX-A48L-01A-11R-A30C-07 STK39~Nchr2~237899679 intergenic "STK39," "-," chr2~chr2 169103738 237899679 3 -+ 0.636514 3 0 3 3 54 TCGA-DX-A48L-01A-11R-A30C-07 STK39~Nchr2~237905746 intergenic "STK39," "-," chr2~chr2 169103738 237905746 34 -+ 2.542931 31 1 30 31 54 TCGA-DX-A48L-01A-11R-A30C-07 TP53~PITPNA fusion "WRAP53,TP53," "AC100748.2,PITPNA," chr17~chr17 7590695 1421325 15 -- 2.061113 6 1 5 6 42 TCGA-DX-A48L-01A-11R-A30C-07 TPCN2~Nchr11~51291152 intergenic "TPCN2," "-," chr11~chr11 68838888 51291152 4 ++ 1.039721 3 1 2 3 12 TCGA-DX-A48L-01A-11R-A30C-07 USP14~NOL4 fusion "USP14," "NOL4," chr18~chr18 180339 31463388 8 +- 1.906155 8 5 3 8 22 TCGA-DX-A48L-01A-11R-A30C-07 WRAP53~PITPNA fusion "WRAP53," "AC100748.2,PITPNA," chr17~chr17 7593019 1421325 14 +- 1.87116 8 0 8 8 24 TCGA-DX-A48L-01A-11R-A30C-07 ZFAND2B~AC069513.3 fusion "ZFAND2B," "AC069513.3," chr2~chr3 220073070 195435005 8 ++ 1.906155 8 4 4 8 14 TCGA-DX-A48L-01A-11R-A30C-07 ZIC1~Nchr3~147406764 intergenic "ZIC1," "-," chr3~chr3 147139346 147406764 3 ++ 1.098612 3 2 1 3 14 TCGA-DX-A48L-01A-11R-A30C-07 ZNF236~Nchr18~65612612 intergenic "ZNF236," "-," chr18~chr18 74593468 65612612 2 +- 0.693147 2 1 1 2 10 TCGA-DX-A48K-01A-11R-A30C-07 ADAM10~Nchr15~29949183 intergenic "ADAM10," "-," chr15~chr15 58932976 29949183 19 -+ 2.579625 18 7 11 18 40 TCGA-DX-A48K-01A-11R-A30C-07 ADAM10~Nchr15~29956670 intergenic "ADAM10," "-," chr15~chr15 58932976 29956670 2 -+ 0.693147 2 2 0 2 30 TCGA-DX-A48K-01A-11R-A30C-07 C1orf196~KAZN fusion "C1orf196," "KAZN," chr1~chr1 14507087 14925479 4 ++ 1.039721 3 2 1 3 4 TCGA-DX-A48K-01A-11R-A30C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266533 94034039 2 -+ 0.693147 2 1 1 2 72 TCGA-DX-A48K-01A-11R-A30C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267220 94034985 5 -+ 1.609438 3 2 1 3 30 TCGA-DX-A48K-01A-11R-A30C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273284 94039795 27 -+ 2.064238 2 2 0 2 62 TCGA-DX-A48K-01A-11R-A30C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94042395 2 -+ 0.693147 1 1 0 1 72 TCGA-DX-A48K-01A-11R-A30C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273675 94047856 8 -+ 1.494175 5 5 0 5 30 TCGA-DX-A48K-01A-11R-A30C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266335 94053721 2 -+ 0.693147 2 2 0 2 142 TCGA-DX-A48K-01A-11R-A30C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264001 94057605 3 -+ 1.098612 2 1 1 2 60 TCGA-DX-A48K-01A-11R-A30C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266738 189856240 6 -+ 1.56071 1 0 1 1 16 TCGA-DX-A48K-01A-11R-A30C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48264376 189862098 4 -+ 1.039721 3 1 2 3 18 TCGA-DX-A48K-01A-11R-A30C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266738 189868137 5 -+ 0.950271 1 1 0 1 18 TCGA-DX-A48K-01A-11R-A30C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265237 189871089 5 -+ 1.332179 5 4 1 5 26 TCGA-DX-A48K-01A-11R-A30C-07 COL1A1~COL6A2 fusion "COL1A1," "COL6A2," chr17~chr21 48263943 47538547 2 -+ 0.693147 2 1 1 2 6 TCGA-DX-A48K-01A-11R-A30C-07 COL1A1~COL6A2 fusion "COL1A1," "COL6A2," chr17~chr21 48271304 47542022 3 -+ 1.098612 2 2 0 2 6 TCGA-DX-A48K-01A-11R-A30C-07 COL1A1~DES fusion "COL1A1," "DES," chr17~chr2 48266555 220291130 5 -+ 0.500402 5 4 1 5 4 TCGA-DX-A48K-01A-11R-A30C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047864 48266636 4 +- 0.562335 4 0 4 4 80 TCGA-DX-A48K-01A-11R-A30C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94056607 48270054 6 +- 1.242453 2 2 0 2 30 TCGA-DX-A48K-01A-11R-A30C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049717 48272143 5 +- 0.950271 4 1 3 4 32 TCGA-DX-A48K-01A-11R-A30C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94045815 48272461 2 +- 0.693147 2 0 2 2 22 TCGA-DX-A48K-01A-11R-A30C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94052430 48272839 2 +- 0.693147 1 1 0 1 20 TCGA-DX-A48K-01A-11R-A30C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189864303 48265317 2 +- 0.693147 2 1 1 2 16 TCGA-DX-A48K-01A-11R-A30C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189858808 48271808 2 +- 0.693147 2 2 0 2 6 TCGA-DX-A48K-01A-11R-A30C-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189867045 94055069 3 ++ 1.098612 3 2 1 3 4 TCGA-DX-A48K-01A-11R-A30C-07 COL6A2~COL1A2 fusion "COL6A2," "COL1A2," chr21~chr7 47535932 94053667 9 ++ 1.060857 6 5 1 6 4 TCGA-DX-A48K-01A-11R-A30C-07 FLNB~PHF5A fusion "FLNB," "PHF5A," chr3~chr22 58067503 41856491 3 +- 1.098612 3 2 1 3 8 TCGA-DX-A48K-01A-11R-A30C-07 FRYL~Nchr1~9741193 intergenic "FRYL," "-," chr4~chr1 48575203 9741193 18 -- 2.245172 18 10 8 18 84 TCGA-DX-A48K-01A-11R-A30C-07 GAS7~USP12 fusion "GAS7," "USP12," chr17~chr13 10101525 27690733 8 -- 1.732868 5 5 0 5 16 TCGA-DX-A48K-01A-11R-A30C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 90 -- 2.040339 90 90 0 90 130 TCGA-DX-A48K-01A-11R-A30C-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 64 -- 2.129575 65 0 63 65 38 TCGA-DX-A48K-01A-11R-A30C-07 HLA-L~Nchr6~29864828 intergenic "HLA-L," "-," chr6~chr6 30229256 29864828 196 ++ 2.069902 28 28 0 28 2 TCGA-DX-A48K-01A-11R-A30C-07 IL4I1~P4HB fusion "IL4I1,NUP62," "P4HB," chr19~chr17 50430951 79805223 4 -- 1.386294 4 2 2 4 8 TCGA-DX-A48K-01A-11R-A30C-07 ISLR~COL1A1 fusion "ISLR," "COL1A1," chr15~chr17 74467727 48263743 2 +- 0.693147 2 0 2 2 2 TCGA-DX-A48K-01A-11R-A30C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 26 -+ 2.215192 8 0 8 8 12 TCGA-DX-A48K-01A-11R-A30C-07 Nchr12~74544782~Nchr12~74336041 intergenic "-," "-," chr12~chr12 74544782 74336041 4 -- 1.039721 3 0 3 3 2 TCGA-DX-A48K-01A-11R-A30C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 17 -+ 2.399204 18 11 6 18 142 TCGA-DX-A48K-01A-11R-A30C-07 Nchr5~155108550~SGCD intergenic "-," "SGCD," chr5~chr5 155108550 155550866 4 ++ 1.386294 2 0 2 2 14 TCGA-DX-A48K-01A-11R-A30C-07 RNF126~GNG7 fusion "RNF126," "GNG7," chr19~chr19 652233 2555186 5 -- 1.609438 5 4 1 5 8 TCGA-DX-A48K-01A-11R-A30C-07 RNF126~GNG7 fusion "RNF126," "GNG7," chr19~chr19 652233 2631902 75 -- 3.184626 71 28 42 71 316 TCGA-DX-A48K-01A-11R-A30C-07 RP11-385D13.1~Nchr17~12244692 intergenic "RP11-385D13.1,TRIM16," "-," chr17~chr17 15554405 12244692 2 -- 0.693147 2 0 2 2 12 TCGA-DX-A48K-01A-11R-A30C-07 VIM~COL1A1 fusion "VIM," "COL1A1," chr10~chr17 17271931 48263193 2 +- 0.693147 1 0 1 1 4 TCGA-JV-A5VE-01A-11R-A29R-07 AEBP2~LMO3 fusion "AEBP2," "LMO3," chr12~chr12 19646920 16753802 8 +- 1.906155 8 5 3 8 22 TCGA-JV-A5VE-01A-11R-A29R-07 ANK2~Nchr4~112756918 intergenic "ANK2," "-," chr4~chr4 114282053 112756918 3 ++ 1.098612 3 2 1 3 10 TCGA-JV-A5VE-01A-11R-A29R-07 ANK2~RP11-269F21.1 fusion "ANK2," "RP11-269F21.1," chr4~chr4 114282053 112758610 10 ++ 1.834372 9 4 5 9 66 TCGA-JV-A5VE-01A-11R-A29R-07 GLOD4~NPLOC4 fusion "GLOD4," "NPLOC4," chr17~chr17 673109 79589304 14 -- 1.828841 13 6 7 13 34 TCGA-JV-A5VE-01A-11R-A29R-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 590 -- 2.572716 588 587 1 588 584 TCGA-JV-A5VE-01A-11R-A29R-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32487941 32548633 137 -- 2.480404 32 3 29 32 8 TCGA-JV-A5VE-01A-11R-A29R-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 461 -- 2.495545 248 56 192 248 2 TCGA-JV-A5VE-01A-11R-A29R-07 HLA-L~Nchr6~29864828 intergenic "HLA-L," "-," chr6~chr6 30229256 29864828 949 ++ 2.342798 160 160 0 160 6 TCGA-JV-A5VE-01A-11R-A29R-07 LOH12CR1~Nchr12~22721242 intergenic "LOH12CR1," "-," chr12~chr12 12514283 22721242 8 +- 1.906155 7 5 2 7 40 TCGA-JV-A5VE-01A-11R-A29R-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 72 -+ 2.45606 22 0 22 22 42 TCGA-JV-A5VE-01A-11R-A29R-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 19 -+ 2.479122 16 11 5 16 162 TCGA-JV-A5VE-01A-11R-A29R-07 Nchr4~158598379~Nchr4~158334363 intergenic "-," "-," chr4~chr4 158598379 158334363 6 -- 1.242453 5 5 0 5 26 TCGA-JV-A5VE-01A-11R-A29R-07 Nchr5~148803807~PCYOX1L intergenic "-," "PCYOX1L," chr5~chr5 148803807 148743599 36 ++ 2.6087 36 23 13 36 150 TCGA-JV-A5VE-01A-11R-A29R-07 Nchr5~148803960~PCYOX1L intergenic "-," "PCYOX1L," chr5~chr5 148803960 148743599 60 ++ 2.977353 58 27 27 58 306 TCGA-JV-A5VE-01A-11R-A29R-07 Nchr6~21909834~Nchr6~22256603 intergenic "-," "-," chr6~chr6 21909834 22256603 2 ++ 0.693147 1 1 0 1 6 TCGA-JV-A5VE-01A-11R-A29R-07 Nchr6~29858444~HLA-A intergenic "-," "HLA-A," chr6~chr6 29858444 29913282 2 -- 0.693147 2 0 2 2 12 TCGA-JV-A5VE-01A-11R-A29R-07 Nchr6~8558876~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8558876 8784424 7 ++ 1.94591 3 1 2 3 2 TCGA-JV-A5VE-01A-11R-A29R-07 Nchr7~135665806~AC009784.3 intergenic "-," "AC009784.3," chr7~chr7 135665806 135926898 2 ++ 0.693147 2 1 1 2 12 TCGA-JV-A5VE-01A-11R-A29R-07 Nchr7~20618404~Nchr7~20368479 intergenic "-," "-," chr7~chr7 20618404 20368479 5 -- 1.609438 3 1 2 3 10 TCGA-JV-A5VE-01A-11R-A29R-07 Nchr8~71965869~PTDSS1 intergenic "-," "PTDSS1," chr8~chr8 71965869 97278565 2 +- 0.693147 1 1 0 1 6 TCGA-JV-A5VE-01A-11R-A29R-07 Nchr9~92470507~RP5-1050E16.2 intergenic "-," "RP5-1050E16.2," chr9~chr9 92470507 92522698 2 ++ 0.693147 2 0 2 2 8 TCGA-JV-A5VE-01A-11R-A29R-07 RB1~Nchr13~51873765 intergenic "RB1," "-," chr13~chr13 48955579 51873765 3 +- 1.098612 2 1 1 2 34 TCGA-JV-A5VE-01A-11R-A29R-07 RB1~Nchr13~51898850 intergenic "RB1," "-," chr13~chr13 48955579 51898850 2 +- 0.693147 1 1 0 1 4 TCGA-JV-A5VE-01A-11R-A29R-07 RP11-335L9.1~Nchr3~177483365 intergenic "RP11-335L9.1," "-," chr3~chr3 177159898 177483365 4 ++ 0.562335 4 0 4 4 4 TCGA-JV-A5VE-01A-11R-A29R-07 WIPI1~Nchr17~66076358 intergenic "WIPI1," "-," chr17~chr17 66440634 66076358 7 -- 1.475076 7 6 1 7 10 TCGA-JV-A5VE-01A-11R-A29R-07 ZNF141~ZNF718 fusion "ZNF141," "ZNF718," chr4~chr4 338219 154702 2 ++ 0.693147 2 1 1 2 6 TCGA-HB-A5W3-01A-11R-A29R-07 EP400~SFSWAP fusion "EP400," "SFSWAP," chr12~chr12 132472435 132262610 7 ++ 1.549826 7 3 4 7 12 TCGA-HB-A5W3-01A-11R-A29R-07 FOXJ3~Nchr13~71750701 intergenic "FOXJ3," "-," chr1~chr13 42664773 71750701 26 -- 2.408343 25 17 8 25 96 TCGA-HB-A5W3-01A-11R-A29R-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 78 -- 2.15659 78 77 1 78 56 TCGA-HB-A5W3-01A-11R-A29R-07 ITM2B~Nchr13~88283254 intergenic "ITM2B," "-," chr13~chr13 48833083 88283254 4 +- 0.693147 4 2 2 4 16 TCGA-HB-A5W3-01A-11R-A29R-07 ITM2B~Nchr13~88367749 intergenic "ITM2B," "-," chr13~chr13 48833083 88367749 48 +- 2.846136 48 24 17 48 122 TCGA-HB-A5W3-01A-11R-A29R-07 ITM2B~Nchr13~88378097 intergenic "ITM2B," "-," chr13~chr13 48833083 88378097 4 +- 1.609438 5 0 4 5 42 TCGA-HB-A5W3-01A-11R-A29R-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 47 -+ 2.509662 28 0 28 28 20 TCGA-HB-A5W3-01A-11R-A29R-07 Nchr14~58448631~SLC35F4 intergenic "-," "SLC35F4," chr14~chr14 58448631 58060842 7 -- 1.475076 7 4 3 7 58 TCGA-HB-A5W3-01A-11R-A29R-07 Nchr15~21916043~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21916043 20876597 14 -- 2.242973 14 12 2 14 48 TCGA-HB-A5W3-01A-11R-A29R-07 Nchr15~35838674~Nchr15~36150188 intergenic "-," "-," chr15~chr15 35838674 36150188 3 ++ 0.636514 3 1 2 3 14 TCGA-HB-A5W3-01A-11R-A29R-07 Nchr17~13937325~AC015842.1 intergenic "-," "AC015842.1," chr17~chr17 13937325 13680666 5 -- 1.332179 5 4 1 5 16 TCGA-HB-A5W3-01A-11R-A29R-07 Nchr9~29212920~Nchr9~28947912 intergenic "-," "-," chr9~chr9 29212920 28947912 6 -- 1.791759 4 1 3 4 4 TCGA-HB-A5W3-01A-11R-A29R-07 RP11-335L9.1~Nchr3~177483365 intergenic "RP11-335L9.1," "-," chr3~chr3 177257281 177483365 12 ++ 2.022809 7 1 6 7 14 TCGA-HB-A5W3-01A-11R-A29R-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 4 ++ 0.693147 4 2 2 4 4 TCGA-HB-A5W3-01A-11R-A29R-07 RPL5~Nchr15~71356300 intergenic "RPL5," "-," chr1~chr15 93297597 71356300 4 -- 1.386294 3 3 0 3 2 TCGA-HB-A5W3-01A-11R-A29R-07 RPL5~Nchr1~99473933 intergenic "RPL5," "-," chr1~chr1 93303131 99473933 3 -- 0.636514 3 3 0 3 2 TCGA-HB-A5W3-01A-11R-A29R-07 SCMH1~HOOK3 fusion "SCMH1," "HOOK3," chr1~chr8 41578955 42761316 3 -+ 0.636514 2 2 0 2 28 TCGA-MB-A5Y8-01A-11R-A29R-07 ANKRD13C~PTGER3 fusion "ANKRD13C," "PTGER3," chr1~chr1 70766447 71440071 3 -- 0.636514 3 3 0 3 16 TCGA-MB-A5Y8-01A-11R-A29R-07 BIRC6~Nchr6~25737488 intergenic "BIRC6," "-," chr2~chr6 32661252 25737488 10 ++ 1.418484 10 4 6 10 38 TCGA-MB-A5Y8-01A-11R-A29R-07 BIRC6~Nchr6~25737488 intergenic "BIRC6," "-," chr2~chr6 32658872 25737488 6 ++ 1.011404 6 6 0 6 8 TCGA-MB-A5Y8-01A-11R-A29R-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32487941 32548633 66 -- 2.161743 16 4 12 16 8 TCGA-MB-A5Y8-01A-11R-A29R-07 MTAP~CDKN2B-AS1 fusion "MTAP," "CDKN2B-AS1," chr9~chr9 21818201 22120503 3 ++ 0.636514 2 2 0 2 6 TCGA-MB-A5Y8-01A-11R-A29R-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 42 -+ 2.132566 28 0 28 28 20 TCGA-MB-A5Y8-01A-11R-A29R-07 Nchr16~79619777~Nchr16~79246798 intergenic "-," "-," chr16~chr16 79619777 79246798 2 -- 0.693147 2 0 2 2 4 TCGA-MB-A5Y8-01A-11R-A29R-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 25 -+ 2.47138 25 17 7 25 294 TCGA-MB-A5Y8-01A-11R-A29R-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 52 ++ 2.297092 5 0 5 5 2 TCGA-MB-A5Y8-01A-11R-A29R-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 8 ++ 0.900256 6 5 1 6 18 TCGA-MB-A5Y8-01A-11R-A29R-07 SLC17A9~Nchr20~49892928 intergenic "SLC17A9," "-," chr20~chr20 61597077 49892928 7 ++ 0.59827 7 2 5 7 10 TCGA-MB-A5Y8-01A-11R-A29R-07 SLC17A9~Nchr20~58999768 intergenic "SLC17A9," "-," chr20~chr20 61597077 58999768 23 ++ 2.099856 23 12 11 23 278 TCGA-MB-A5Y8-01A-11R-A29R-07 SLC17A9~Nchr20~59000757 intergenic "SLC17A9," "-," chr20~chr20 61597077 59000757 10 ++ 1.0889 10 4 6 10 14 TCGA-MB-A5Y8-01A-11R-A29R-07 SLC17A9~Nchr20~59001197 intergenic "SLC17A9," "-," chr20~chr20 61597077 59001197 69 ++ 2.946711 60 25 35 60 290 TCGA-MB-A5Y8-01A-11R-A29R-07 ZNF362~RP11-90C4.1 fusion "ZNF362," "RP11-90C4.1," chr1~chr1 33742195 56297937 152 ++ 3.121822 150 2 148 150 172 TCGA-MB-A5YA-01A-11R-A29R-07 HLA-B~Nchr6~29902006 intergenic "HLA-B," "-," chr6~chr6 31323352 29902006 5 ++ 0.500402 5 5 0 5 94 TCGA-MB-A5YA-01A-11R-A29R-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 299 -- 2.566623 173 31 142 173 2 TCGA-MB-A5YA-01A-11R-A29R-07 LPAR6~RNASEH2B fusion "LPAR6," "RNASEH2B," chr13~chr13 48986557 51501543 33 -+ 2.256664 31 19 11 31 114 TCGA-MB-A5YA-01A-11R-A29R-07 MX1~Nchr21~42814673 intergenic "MX1," "-," chr21~chr21 42804102 42814673 33 +- 1.848282 33 10 23 33 156 TCGA-MB-A5YA-01A-11R-A29R-07 NOP56~Nchr12~79952582 intergenic "NOP56,NOP56," "-," chr20~chr12 2637857 79952582 14 ++ 1.908535 5 0 5 5 2 TCGA-MB-A5YA-01A-11R-A29R-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 105 -+ 2.467712 35 0 35 35 20 TCGA-MB-A5YA-01A-11R-A29R-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 7 -+ 1.732868 7 2 4 7 290 TCGA-MB-A5YA-01A-11R-A29R-07 Nchr7~110514869~IMMP2L intergenic "-," "IMMP2L," chr7~chr7 110514869 110303777 9 -- 1.14906 8 3 5 8 50 TCGA-MB-A5YA-01A-11R-A29R-07 PRR4~Nchr12~11148924 intergenic "PRR4,TAS2R14,PRR4," "-," chr12~chr12 11199619 11148924 2 -- 0.693147 1 1 0 1 54 TCGA-MB-A5YA-01A-11R-A29R-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 3 ++ 0.636514 3 3 0 3 10 TCGA-MB-A5Y9-01A-11R-A29R-07 C5orf45~NchrX~87145267 intergenic "C5orf45," "-," chr5~chrX 179280378 87145267 6 -+ 0.636514 4 0 4 4 12 TCGA-MB-A5Y9-01A-11R-A29R-07 DCLRE1C~Nchr15~23844204 intergenic "DCLRE1C," "-," chr10~chr15 14970015 23844204 18 -- 0.848686 18 4 14 18 32 TCGA-MB-A5Y9-01A-11R-A29R-07 DYNC1H1~MARCH11 fusion "DYNC1H1," "MARCH11," chr14~chr5 102494478 16067902 5 +- 1.05492 5 0 5 5 10 TCGA-MB-A5Y9-01A-11R-A29R-07 DYNC1H1~MARCH11 fusion "DYNC1H1," "MARCH11," chr14~chr5 102494478 16091190 4 +- 0.693147 4 0 4 4 18 TCGA-MB-A5Y9-01A-11R-A29R-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 407 -- 2.179747 323 64 259 323 4 TCGA-MB-A5Y9-01A-11R-A29R-07 HN1~Nchr2~174296244 intergenic "HN1," "-," chr17~chr2 73143651 174296244 138 -- 1.37472 97 97 0 97 14 TCGA-MB-A5Y9-01A-11R-A29R-07 IGHV4-39~IGHG1 fusion "IGHV4-39," "IGHG1," chr14~chr14 106878010 106209407 11 -- 1.641735 11 11 0 11 26 TCGA-MB-A5Y9-01A-11R-A29R-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 18 -+ 1.522955 12 0 12 12 44 TCGA-MB-A5Y9-01A-11R-A29R-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 35 -+ 1.98487 35 15 20 35 288 TCGA-MB-A5Y9-01A-11R-A29R-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 10 ++ 0.325083 10 9 1 10 18 TCGA-MB-A5Y9-01A-11R-A29R-07 SASH1~Nchr6~110240974 intergenic "SASH1," "-," chr6~chr6 148852797 110240974 6 ++ 1.791759 5 1 4 5 46 TCGA-JV-A5VF-01A-11R-A29R-07 ANXA5~Nchr4~122472684 intergenic "ANXA5," "-," chr4~chr4 122599049 122472684 11 -+ 1.366711 11 0 11 11 40 TCGA-JV-A5VF-01A-11R-A29R-07 ANXA5~Nchr4~122499940 intergenic "ANXA5," "-," chr4~chr4 122599049 122499940 3 -+ 1.098612 3 1 2 3 38 TCGA-JV-A5VF-01A-11R-A29R-07 ANXA5~Nchr4~122502827 intergenic "ANXA5," "-," chr4~chr4 122599049 122502827 7 -+ 1.475076 6 5 1 6 28 TCGA-JV-A5VF-01A-11R-A29R-07 C15orf57~CBX3 fusion "C15orf57," "CBX3," chr15~chr7 40854971 26241389 4 -+ 1.039721 4 3 1 4 2 TCGA-JV-A5VF-01A-11R-A29R-07 CENPE~Nchr4~140817594 intergenic "CENPE," "-," chr4~chr4 104095893 140817594 5 -+ 1.05492 3 3 0 3 10 TCGA-JV-A5VF-01A-11R-A29R-07 COL1A1~COL6A1 fusion "COL1A1," "COL6A1," chr17~chr21 48262838 47424691 2 -+ 0.693147 1 1 0 1 6 TCGA-JV-A5VF-01A-11R-A29R-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94052430 48270175 24 +- 2.084201 7 4 3 7 4 TCGA-JV-A5VF-01A-11R-A29R-07 EED~RP11-184I16.4 fusion "EED," "RP11-184I16.4," chr11~chr1 85956385 44186222 54 +- 2.860487 45 30 15 45 204 TCGA-JV-A5VF-01A-11R-A29R-07 FAT1~Nchr3~57711218 intergenic "FAT1," "-," chr4~chr3 187627717 57711218 5 -+ 1.332179 5 0 5 5 30 TCGA-JV-A5VF-01A-11R-A29R-07 FAT1~Nchr3~57722629 intergenic "FAT1," "-," chr4~chr3 187627717 57722629 9 -+ 0.936888 9 5 4 9 24 TCGA-JV-A5VF-01A-11R-A29R-07 FAT1~Nchr3~57739533 intergenic "FAT1," "-," chr4~chr3 187627717 57739533 15 -+ 1.968693 15 8 7 15 24 TCGA-JV-A5VF-01A-11R-A29R-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 176 -- 2.618394 176 173 3 176 206 TCGA-JV-A5VF-01A-11R-A29R-07 LDHB~NchrX~75556263 intergenic "LDHB," "-," chr12~chrX 21810698 75556263 2 -- 0.693147 1 0 1 1 12 TCGA-JV-A5VF-01A-11R-A29R-07 MYO10~RB1 fusion "MYO10," "RB1," chr5~chr13 16689933 48934153 4 -+ 1.039721 4 2 2 4 2 TCGA-JV-A5VF-01A-11R-A29R-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 89 -+ 2.52109 50 0 50 50 40 TCGA-JV-A5VF-01A-11R-A29R-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 4 ++ 1.039721 4 1 3 4 36 TCGA-JV-A5VF-01A-11R-A29R-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 2 ++ 0.693147 2 2 0 2 18 TCGA-JV-A5VF-01A-11R-A29R-07 Nchr2~177065929~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065929 177065788 4 ++ 1.039721 4 2 2 4 82 TCGA-JV-A5VF-01A-11R-A29R-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 2 ++ 0.693147 2 2 0 2 14 TCGA-JV-A5VF-01A-11R-A29R-07 NchrX~36982319~NchrX~36698022 intergenic "-," "-," chrX~chrX 36982319 36698022 3 -- 1.098612 3 0 3 3 62 TCGA-JV-A5VF-01A-11R-A29R-07 NchrX~56757835~NchrX~56844004 intergenic "-," "-," chrX~chrX 56757835 56844004 27 -- 1.219928 22 4 18 22 1482 TCGA-JV-A5VF-01A-11R-A29R-07 PTGFRN~Nchr1~119171079 intergenic "PTGFRN," "-," chr1~chr1 117452874 119171079 2 +- 0.693147 2 0 2 2 4 TCGA-JV-A5VF-01A-11R-A29R-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 3 ++ 0.636514 3 1 2 3 10 TCGA-JV-A5VF-01A-11R-A29R-07 TPM4~Nchr3~27674690 intergenic "TPM4," "-," chr19~chr3 16186932 27674690 2 -+ 0.693147 1 0 1 1 8 TCGA-DX-A3U8-01A-11R-A29R-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264376 94038082 3 -+ 1.098612 1 0 1 1 4 TCGA-DX-A3U8-01A-11R-A29R-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94047811 11 -+ 0.859967 8 7 1 8 12 TCGA-DX-A3U8-01A-11R-A29R-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94048824 48265983 5 +- 1.05492 3 1 2 3 4 TCGA-DX-A3U8-01A-11R-A29R-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94053755 48273026 7 +- 1.153742 1 1 0 1 4 TCGA-DX-A3U8-01A-11R-A29R-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31237743 31322442 114 -- 2.216111 50 9 40 50 58 TCGA-DX-A3U8-01A-11R-A29R-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 754 -- 2.19429 741 737 4 741 1086 TCGA-DX-A3U8-01A-11R-A29R-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 268 -- 2.156018 281 2 262 281 582 TCGA-DX-A3U8-01A-11R-A29R-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 59 -+ 2.31927 23 0 23 23 52 TCGA-DX-A3U8-01A-11R-A29R-07 Nchr12~95211866~TMCC3 intergenic "-," "TMCC3," chr12~chr12 95211866 94976314 2 -- 0.693147 2 2 0 2 6 TCGA-DX-A3U8-01A-11R-A29R-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 7 ++ 1.747868 5 5 0 5 16 TCGA-DX-A3U8-01A-11R-A29R-07 Nchr19~50223254~RPS9 intergenic "-," "RPS9," chr19~chr19 50223254 54704726 2 ++ 0.693147 1 0 1 1 16 TCGA-DX-A3U8-01A-11R-A29R-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 3 -- 1.098612 1 1 0 1 2 TCGA-DX-A3U8-01A-11R-A29R-07 Nchr6~29896012~HLA-C intergenic "-," "HLA-C," chr6~chr6 29896012 31238061 16 -- 2.426015 6 0 6 6 46 TCGA-DX-A3U8-01A-11R-A29R-07 Nchr9~33624508~Nchr9~33624745 intergenic "-," "-," chr9~chr9 33624508 33624745 3 -- 0.636514 3 0 3 3 38 TCGA-DX-A3U8-01A-11R-A29R-07 Nchr9~33624554~Nchr9~33624733 intergenic "-," "-," chr9~chr9 33624554 33624733 2 -- 0.693147 2 1 1 2 10 TCGA-DX-A3U8-01A-11R-A29R-07 PRR16~CTD-2334D19.1 fusion "PRR16," "CTD-2334D19.1," chr5~chr5 119800340 120125649 6 ++ 1.329661 6 4 2 6 16 TCGA-DX-A3U7-01A-11R-A29R-07 AGAP1~ATG4B fusion "AGAP1," "ATG4B," chr2~chr2 236403493 242590425 15 ++ 2.211069 12 2 10 12 44 TCGA-DX-A3U7-01A-11R-A29R-07 AP000318.2~Nchr18~25513088 intergenic "AP000318.2," "-," chr21~chr18 35666056 25513088 13 +- 2.351673 4 3 1 4 12 TCGA-DX-A3U7-01A-11R-A29R-07 DAB1~Nchr1~58436537 intergenic "DAB1," "-," chr1~chr1 58715912 58436537 6 -- 1.791759 5 1 4 5 6 TCGA-DX-A3U7-01A-11R-A29R-07 DCBLD2~Nchr10~42396888 intergenic "DCBLD2," "-," chr3~chr10 98539092 42396888 2 -- 0.693147 1 0 1 1 4 TCGA-DX-A3U7-01A-11R-A29R-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32487941 32548633 19 -- 2.232694 1 0 1 1 4 TCGA-DX-A3U7-01A-11R-A29R-07 MYST4~Nchr2~113437299 intergenic "MYST4," "-," chr10~chr2 76585432 113437299 5 ++ 0.950271 5 1 4 5 16 TCGA-DX-A3U7-01A-11R-A29R-07 Nchr10~47655224~ZNF488 intergenic "-," "ZNF488," chr10~chr10 47655224 48359418 10 -- 2.025326 3 3 0 3 2 TCGA-DX-A3U7-01A-11R-A29R-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 70 -+ 2.529839 29 0 28 29 10 TCGA-DX-A3U7-01A-11R-A29R-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 8 ++ 1.213008 8 3 5 8 12 TCGA-DX-A3U7-01A-11R-A29R-07 Nchr19~59070776~MZF1 intergenic "-," "MZF1," chr19~chr19 59070776 59082796 6 +- 1.56071 6 3 3 6 18 TCGA-DX-A3U7-01A-11R-A29R-07 Nchr1~224051568~ACTA2 intergenic "-," "RP11-399O19.5,ACTA2," chr1~chr10 224051568 90695115 4 -- 1.039721 3 0 3 3 4 TCGA-DX-A3U7-01A-11R-A29R-07 Nchr2~139258325~Nchr2~139057107 intergenic "-," "-," chr2~chr2 139258325 139057107 4 -- 1.386294 2 1 1 2 12 TCGA-DX-A3U7-01A-11R-A29R-07 Nchr2~177065789~Nchr2~177065913 intergenic "-," "-," chr2~chr2 177065789 177065913 2 -- 0.693147 2 0 2 2 6 TCGA-DX-A3U7-01A-11R-A29R-07 Nchr2~214493222~SPAG16 intergenic "-," "SPAG16," chr2~chr2 214493222 214727209 4 ++ 1.386294 1 0 1 1 8 TCGA-DX-A3U7-01A-11R-A29R-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 2 ++ 0.693147 2 2 0 2 2 TCGA-DX-A3U7-01A-11R-A29R-07 Nchr9~19200532~RPS6 intergenic "-," "RPS6," chr9~chr9 19200532 19378478 2 -- 0.693147 2 0 2 2 10 TCGA-DX-A3U7-01A-11R-A29R-07 PCNT~Nchr2~220650571 intergenic "PCNT," "-," chr21~chr2 47787054 220650571 6 +- 1.791759 6 4 2 6 54 TCGA-DX-A3U7-01A-11R-A29R-07 PID1~AP000318.2 fusion "PID1," "MRPS6,AP000318.2,MRPS6," chr2~chr21 230135730 35497641 7 -+ 1.549826 6 1 5 6 102 TCGA-DX-A3U7-01A-11R-A29R-07 PID1~AP000318.2 fusion "PID1," "MRPS6,AP000318.2,MRPS6," chr2~chr21 230020534 35497641 114 -+ 3.084563 79 23 52 79 372 TCGA-DX-A3U7-01A-11R-A29R-07 PID1~AP000318.2 fusion "PID1," "AP000318.2," chr2~chr21 230020534 35665981 22 -+ 2.26353 8 2 6 8 22 TCGA-DX-A3U7-01A-11R-A29R-07 PID1~MRPS6 fusion "PID1," "MRPS6," chr2~chr21 230020534 35514708 9 -+ 2.043192 6 1 5 6 98 TCGA-DX-A3U7-01A-11R-A29R-07 RP11-96H19.1~Nchr12~47270358 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47270358 4 ++ 1.039721 4 1 3 4 14 TCGA-DX-A3U7-01A-11R-A29R-07 TCF4~Nchr21~25402991 intergenic "TCF4," "-," chr18~chr21 53252511 25402991 10 -- 2.025326 10 5 5 10 34 TCGA-DX-A3U7-01A-11R-A29R-07 ZNF793~ST3GAL6 fusion "ZNF793," "ST3GAL6," chr19~chr3 38014356 98539632 6 ++ 1.242453 5 0 5 5 8 TCGA-DX-A3U6-01A-11R-A29R-07 AC016995.3~RPLP0 fusion "AC016995.3," "RPLP0," chr2~chr12 38709197 120638900 3 -- 0.636514 3 3 0 3 90 TCGA-DX-A3U6-01A-11R-A29R-07 AC096579.13~NchrY~13629437 intergenic "IGKJ2,AC096579.13," "-," chr2~chrY 89161070 13629437 9 ++ 0.848686 7 7 0 7 202 TCGA-DX-A3U6-01A-11R-A29R-07 C14orf43~Nchr12~69377135 intergenic "C14orf43," "-," chr14~chr12 74189401 69377135 36 -+ 2.136128 32 25 7 32 112 TCGA-DX-A3U6-01A-11R-A29R-07 C6orf170~RPF2 fusion "C6orf170," "RPF2," chr6~chr6 121624763 111345386 6 -+ 1.329661 1 1 0 1 10 TCGA-DX-A3U6-01A-11R-A29R-07 CAND1~RP11-542B15.1 fusion "CAND1," "RP11-542B15.1," chr12~chr12 67692875 67939165 3 ++ 0.636514 3 3 0 3 2 TCGA-DX-A3U6-01A-11R-A29R-07 CCT2~Nchr12~64639226 intergenic "CCT2," "-," chr12~chr12 69983467 64639226 7 ++ 0.9557 7 1 6 7 16 TCGA-DX-A3U6-01A-11R-A29R-07 CNTN2~PKP1 fusion "CNTN2," "PKP1," chr1~chr1 205022383 201263070 43 ++ 2.342408 21 7 14 21 136 TCGA-DX-A3U6-01A-11R-A29R-07 CPSF4~RP11-762I7.5 fusion "CPSF4," "RP11-762I7.5,SARNP," chr7~chr12 99040711 56184376 11 +- 0.907535 2 2 0 2 6 TCGA-DX-A3U6-01A-11R-A29R-07 CTDSP1~RP5-1116C7.1 fusion "CTDSP1," "RP5-1116C7.1," chr2~chr1 219267128 172113577 7 +- 0.59827 7 7 0 7 8 TCGA-DX-A3U6-01A-11R-A29R-07 DDIT3~Nchr12~66147293 intergenic "DDIT3," "-," chr12~chr12 57914098 66147293 3 +- 0.636514 3 1 2 3 2 TCGA-DX-A3U6-01A-11R-A29R-07 DNM3~TPH2 fusion "DNM3," "TPH2," chr1~chr12 172222822 72388219 22 ++ 1.917068 16 1 15 16 72 TCGA-DX-A3U6-01A-11R-A29R-07 DOCK8~Nchr12~64633270 intergenic "DOCK8," "-," chr9~chr12 396934 64633270 7 +- 1.153742 4 3 1 4 46 TCGA-DX-A3U6-01A-11R-A29R-07 DYRK2~CNTN2 fusion "DYRK2," "CNTN2," chr12~chr1 68042962 205022228 11 ++ 1.893788 4 4 0 4 6 TCGA-DX-A3U6-01A-11R-A29R-07 DYRK2~CNTN2 fusion "DYRK2," "CNTN2," chr12~chr1 68043725 205022228 37 ++ 2.58564 17 15 2 17 90 TCGA-DX-A3U6-01A-11R-A29R-07 DYRK2~Nchr12~67749630 intergenic "DYRK2," "-," chr12~chr12 68043725 67749630 3 ++ 1.098612 3 1 2 3 14 TCGA-DX-A3U6-01A-11R-A29R-07 DYRK2~Nchr12~67789929 intergenic "DYRK2," "-," chr12~chr12 68043725 67789929 7 +- 1.277034 7 3 4 7 20 TCGA-DX-A3U6-01A-11R-A29R-07 DYRK2~Nchr1~170223927 intergenic "DYRK2," "-," chr12~chr1 68043725 170223927 9 +- 1.889159 9 8 1 9 14 TCGA-DX-A3U6-01A-11R-A29R-07 EPM2A~Nchr20~40660976 intergenic "EPM2A," "-," chr6~chr20 146007258 40660976 13 -- 1.737983 13 11 2 13 58 TCGA-DX-A3U6-01A-11R-A29R-07 GNS~Nchr12~58655839 intergenic "GNS," "-," chr12~chr12 65130784 58655839 11 -- 1.515708 10 8 2 10 22 TCGA-DX-A3U6-01A-11R-A29R-07 HLA-L~Nchr6~29864828 intergenic "HLA-L," "-," chr6~chr6 30229256 29864828 1134 ++ 2.424252 142 142 0 142 4 TCGA-DX-A3U6-01A-11R-A29R-07 IGHG3~IGHV3-49 fusion "IGHG3," "IGHV3-49," chr14~chr14 106236181 107012998 3 -- 0.636514 1 1 0 1 32 TCGA-DX-A3U6-01A-11R-A29R-07 IGHG4~IGHG1 fusion "IGHG4," "IGHG1," chr14~chr14 106091233 106208132 24 -- 1.989788 30 19 3 30 6 TCGA-DX-A3U6-01A-11R-A29R-07 IGHV3-9~IGHG1 fusion "IGHV3-9," "IGHG1," chr14~chr14 106552434 106209407 3 -- 0.636514 2 2 0 2 40 TCGA-DX-A3U6-01A-11R-A29R-07 IGHV5-51~IGHA1 fusion "IGHV5-51," "IGHA1," chr14~chr14 107034959 106175001 6 -- 0.636514 2 2 0 2 6 TCGA-DX-A3U6-01A-11R-A29R-07 IGLV1-51~IGLJ3 fusion "IGLV1-51," "IGLJ3," chr22~chr22 22677320 23247166 60 ++ 2.267486 59 4 54 59 7546 TCGA-DX-A3U6-01A-11R-A29R-07 KIAA0586~Nchr6~136657418 intergenic "KIAA0586," "-," chr14~chr6 58909598 136657418 5 +- 0.500402 5 1 4 5 10 TCGA-DX-A3U6-01A-11R-A29R-07 LRP1~CAND1 fusion "LRP1," "CAND1," chr12~chr12 57596320 67686402 30 ++ 2.337468 29 8 21 29 38 TCGA-DX-A3U6-01A-11R-A29R-07 LRP1~CAND1 fusion "LRP1," "CAND1," chr12~chr12 57596320 67688813 10 ++ 1.504788 10 2 8 10 14 TCGA-DX-A3U6-01A-11R-A29R-07 MSRB3~ACTR5 fusion "MSRB3," "ACTR5," chr12~chr20 65762806 37400202 5 ++ 0.673012 5 5 0 5 20 TCGA-DX-A3U6-01A-11R-A29R-07 MSRB3~Nchr20~44635673 intergenic "MSRB3," "-," chr12~chr20 65762806 44635673 3 +- 0.636514 2 1 1 2 2 TCGA-DX-A3U6-01A-11R-A29R-07 NOP56~Nchr12~79952582 intergenic "NOP56,NOP56," "-," chr20~chr12 2637857 79952582 9 ++ 1.889159 5 0 5 5 12 TCGA-DX-A3U6-01A-11R-A29R-07 NUP107~PAAF1 fusion "NUP107," "PAAF1," chr12~chr11 69115932 73620444 13 ++ 1.585771 13 11 2 13 56 TCGA-DX-A3U6-01A-11R-A29R-07 NUP107~PAAF1 fusion "NUP107," "PAAF1," chr12~chr11 69115932 73625458 5 ++ 0.673012 3 0 3 3 22 TCGA-DX-A3U6-01A-11R-A29R-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 71 -+ 2.302569 26 0 26 26 24 TCGA-DX-A3U6-01A-11R-A29R-07 Nchr12~69377257~Nchr1~170629822 intergenic "-," "-," chr12~chr1 69377257 170629822 110 +- 2.787496 61 47 13 61 156 TCGA-DX-A3U6-01A-11R-A29R-07 Nchr12~69409189~TPH2 intergenic "-," "TPH2," chr12~chr12 69409189 72430468 6 -- 1.011404 6 0 6 6 4 TCGA-DX-A3U6-01A-11R-A29R-07 Nchr12~72445348~Nchr12~69377135 intergenic "-," "-," chr12~chr12 72445348 69377135 16 ++ 1.103433 4 2 2 4 118 TCGA-DX-A3U6-01A-11R-A29R-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 31 -+ 2.279081 29 12 17 29 302 TCGA-DX-A3U6-01A-11R-A29R-07 Nchr20~44632458~ACTR5 intergenic "-," "ACTR5," chr20~chr20 44632458 37400202 3 -+ 0.636514 3 3 0 3 8 TCGA-DX-A3U6-01A-11R-A29R-07 Nchr6~153603717~Nchr6~153603872 intergenic "-," "-," chr6~chr6 153603717 153603872 3 -- 0.636514 3 0 3 3 4 TCGA-DX-A3U6-01A-11R-A29R-07 PRRC2C~AP000350.4 fusion "PRRC2C," "AP000350.4," chr1~chr22 171553326 24238297 7 +- 0.682908 7 3 4 7 14 TCGA-DX-A3U6-01A-11R-A29R-07 PRRC2C~Nchr7~10620308 intergenic "PRRC2C," "-," chr1~chr7 171454874 10620308 10 ++ 1.029653 10 8 2 10 4 TCGA-DX-A3U6-01A-11R-A29R-07 PTGR2~Nchr22~22092482 intergenic "PTGR2," "-," chr14~chr22 74325602 22092482 37 ++ 2.803131 36 19 17 36 132 TCGA-DX-A3U6-01A-11R-A29R-07 R3HDM2~RP11-620J15.3 fusion "R3HDM2," "RP11-620J15.3," chr12~chr12 57789532 58325520 22 -- 1.732492 14 1 13 14 50 TCGA-DX-A3U6-01A-11R-A29R-07 R3HDM2~TPH2 fusion "R3HDM2," "TPH2," chr12~chr12 57789532 72366299 34 -+ 2.229245 30 0 30 30 132 TCGA-DX-A3U6-01A-11R-A29R-07 R3HDM2~TPH2 fusion "R3HDM2," "TPH2," chr12~chr12 57789532 72388219 4 -+ 0.562335 4 0 4 4 8 TCGA-DX-A3U6-01A-11R-A29R-07 TBK1~Nchr12~68277694 intergenic "TBK1," "-," chr12~chr12 64868170 68277694 16 ++ 1.574679 16 4 12 16 70 TCGA-DX-A3U6-01A-11R-A29R-07 TPH2~Nchr12~69377135 intergenic "TPH2," "-," chr12~chr12 72441437 69377135 36 ++ 2.331627 26 10 16 26 182 TCGA-DX-A3U6-01A-11R-A29R-07 TPH2~Nchr12~69377135 intergenic "TPH2," "-," chr12~chr12 72425430 69377135 10 ++ 1.470808 6 1 5 6 4 TCGA-DX-A3U6-01A-11R-A29R-07 TPH2~Nchr12~69377135 intergenic "TPH2," "-," chr12~chr12 72425171 69377135 43 ++ 2.183912 26 3 23 26 140 TCGA-DX-A3U6-01A-11R-A29R-07 YPEL1~SDC4 fusion "YPEL1," "SDC4," chr22~chr20 22089904 43975502 31 -- 2.346659 5 5 0 5 2 TCGA-DX-A3U6-01A-11R-A29R-07 ZC3H11A~Nchr12~69800940 intergenic "ZC3H11A," "-," chr1~chr12 203802981 69800940 775 ++ 3.234414 729 296 423 729 2416 TCGA-DX-A3U6-01A-11R-A29R-07 ZC3H11A~Nchr12~69800940 intergenic "ZC3H11A," "-," chr1~chr12 203803230 69800940 8 ++ 1.255482 8 4 4 8 446 TCGA-DX-A3U6-01A-11R-A29R-07 ZC3H11A~Nchr12~69803650 intergenic "ZC3H11A," "-," chr1~chr12 203802981 69803650 12 ++ 1.589027 9 7 2 9 132 TCGA-DX-A23V-01A-11R-A29R-07 CDK17~Nchr1~89671467 intergenic "CDK17," "-," chr12~chr1 96793764 89671467 16 -+ 1.62862 2 0 2 2 44 TCGA-DX-A23V-01A-11R-A29R-07 CUX2~Nchr12~58284096 intergenic "CUX2," "-," chr12~chr12 111472044 58284096 3 ++ 0.636514 3 3 0 3 18 TCGA-DX-A23V-01A-11R-A29R-07 DAB1~TSPAN31 fusion "OMA1,DAB1,OMA1," "TSPAN31,CDK4," chr1~chr12 58971732 58142400 21 -- 2.284716 21 16 5 21 84 TCGA-DX-A23V-01A-11R-A29R-07 DRAM1~NTN4 fusion "DRAM1," "NTN4," chr12~chr12 102271698 96063922 70 +- 2.741267 67 44 23 67 162 TCGA-DX-A23V-01A-11R-A29R-07 FGD6~Nchr12~100417820 intergenic "FGD6," "-," chr12~chr12 95528515 100417820 17 -+ 2.115209 12 9 3 12 58 TCGA-DX-A23V-01A-11R-A29R-07 FGD6~TBC1D30 fusion "FGD6," "TBC1D30," chr12~chr12 95528515 65232463 12 -+ 1.979205 12 5 7 12 56 TCGA-DX-A23V-01A-11R-A29R-07 FGGY~Nchr13~104047106 intergenic "FGGY," "-," chr1~chr13 59978111 104047106 47 ++ 2.58921 32 16 16 32 104 TCGA-DX-A23V-01A-11R-A29R-07 GNPTAB~FGD6 fusion "GNPTAB," "FGD6," chr12~chr12 102142879 95566520 37 -- 2.389603 31 12 19 31 60 TCGA-DX-A23V-01A-11R-A29R-07 GNPTAB~FGD6 fusion "GNPTAB," "FGD6," chr12~chr12 102147150 95566520 27 -- 2.081951 26 9 17 26 36 TCGA-DX-A23V-01A-11R-A29R-07 GPN3~CNOT2 fusion "GPN3," "CNOT2," chr12~chr12 110893391 70650565 26 -+ 2.501912 24 6 18 24 80 TCGA-DX-A23V-01A-11R-A29R-07 GPN3~Nchr1~80223781 intergenic "GPN3," "-," chr12~chr1 110893391 80223781 3 -- 1.098612 3 2 1 3 2 TCGA-DX-A23V-01A-11R-A29R-07 GPN3~Nchr1~80252538 intergenic "GPN3," "-," chr12~chr1 110893391 80252538 14 -- 1.93381 15 9 5 15 68 TCGA-DX-A23V-01A-11R-A29R-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 361 -- 2.108424 360 358 2 360 378 TCGA-DX-A23V-01A-11R-A29R-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32487941 32548633 102 -- 2.388067 11 2 9 11 12 TCGA-DX-A23V-01A-11R-A29R-07 HMGA2~Nchr12~67808048 intergenic "HMGA2," "-," chr12~chr12 66219161 67808048 14 +- 2.106577 14 3 11 14 156 TCGA-DX-A23V-01A-11R-A29R-07 HVCN1~Nchr1~90905999 intergenic "HVCN1," "-," chr12~chr1 111087973 90905999 3 -+ 0.636514 3 0 3 3 2 TCGA-DX-A23V-01A-11R-A29R-07 LPHN2~RP11-611E13.2 fusion "LPHN2," "RP11-611E13.2," chr1~chr12 82302742 70298199 22 +- 2.278975 19 8 11 19 80 TCGA-DX-A23V-01A-11R-A29R-07 Nchr12~113828504~Nchr12~113828721 intergenic "-," "-," chr12~chr12 113828504 113828721 6 -- 1.011404 6 2 4 6 8 TCGA-DX-A23V-01A-11R-A29R-07 Nchr12~58284096~CUX2 intergenic "-," "CUX2," chr12~chr12 58284096 111628927 4 -- 1.386294 4 2 2 4 4 TCGA-DX-A23V-01A-11R-A29R-07 Nchr12~58375543~Nchr12~72610374 intergenic "-," "-," chr12~chr12 58375543 72610374 7 +- 1.747868 5 2 3 5 18 TCGA-DX-A23V-01A-11R-A29R-07 Nchr12~58388836~ANKS1B intergenic "-," "ANKS1B," chr12~chr12 58388836 99145300 4 +- 1.039721 4 2 2 4 6 TCGA-DX-A23V-01A-11R-A29R-07 Nchr12~66221249~Nchr12~67816216 intergenic "-," "-," chr12~chr12 66221249 67816216 13 +- 1.991509 13 6 7 13 22 TCGA-DX-A23V-01A-11R-A29R-07 Nchr12~72603608~ANKS1B intergenic "-," "ANKS1B," chr12~chr12 72603608 99145300 2 -- 0.693147 2 0 2 2 24 TCGA-DX-A23V-01A-11R-A29R-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 11 ++ 1.162226 10 10 0 10 2 TCGA-DX-A23V-01A-11R-A29R-07 Nchr6~29895882~HLA-B intergenic "-," "HLA-B," chr6~chr6 29895882 31324046 2 -- 0.693147 2 2 0 2 2 TCGA-DX-A23V-01A-11R-A29R-07 PMM2~ABAT fusion "PMM2," "ABAT," chr16~chr16 8905570 8815928 12 ++ 1.791759 12 7 5 12 44 TCGA-DX-A23V-01A-11R-A29R-07 PMM2~ABAT fusion "PMM2," "ABAT," chr16~chr16 8905570 8829556 12 ++ 1.979205 12 6 6 12 22 TCGA-DX-A23V-01A-11R-A29R-07 RP11-571M6.15~LTA4H fusion "METTL21B,RP11-571M6.15," "LTA4H," chr12~chr12 58166856 96418325 3 +- 1.098612 3 0 3 3 24 TCGA-DX-A23V-01A-11R-A29R-07 RP11-571M6.15~LTA4H fusion "METTL21B,RP11-571M6.15," "LTA4H," chr12~chr12 58166911 96418325 15 +- 2.303488 15 2 13 15 60 TCGA-DX-A23V-01A-11R-A29R-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 7 ++ 0.9557 7 2 5 7 6 TCGA-DX-A23V-01A-11R-A29R-07 SCYL2~GIT2 fusion "SCYL2," "GIT2," chr12~chr12 100732362 110399490 39 +- 2.616841 33 15 18 33 180 TCGA-DX-A23V-01A-11R-A29R-07 SYDE2~TCTN1 fusion "SYDE2," "TCTN1," chr1~chr12 85665935 111057641 4 -+ 0.693147 4 0 4 4 10 TCGA-DX-A23V-01A-11R-A29R-07 SYDE2~TCTN1 fusion "SYDE2," "TCTN1," chr1~chr12 85665935 111064167 2 -+ 0.693147 2 1 1 2 6 TCGA-DX-A23V-01A-11R-A29R-07 TCTN1~CPM fusion "TCTN1," "MDM2,CPM," chr12~chr12 111078322 69236109 10 +- 1.643418 10 1 9 10 42 TCGA-DX-A23V-01A-11R-A29R-07 TCTN1~CPM fusion "TCTN1," "MDM2,CPM," chr12~chr12 111078954 69236109 24 +- 2.106003 21 2 19 21 84 TCGA-DX-A23V-01A-11R-A29R-07 TCTN1~FGGY fusion "TCTN1," "FGGY," chr12~chr1 111052207 59787208 28 ++ 2.292087 28 14 14 28 146 TCGA-DX-A23V-01A-11R-A29R-07 TCTN1~HVCN1 fusion "TCTN1," "HVCN1," chr12~chr12 111078322 111099253 2 +- 0.693147 2 0 2 2 14 TCGA-DX-A23V-01A-11R-A29R-07 TCTN1~Nchr1~90878073 intergenic "TCTN1," "-," chr12~chr1 111078322 90878073 5 +- 0.673012 2 0 2 2 16 TCGA-DX-A23V-01A-11R-A29R-07 TCTN1~Nchr1~90878073 intergenic "TCTN1," "-," chr12~chr1 111078954 90878073 3 +- 0.636514 1 1 0 1 18 TCGA-DX-A23V-01A-11R-A29R-07 TCTN1~Nchr1~90883934 intergenic "TCTN1," "-," chr12~chr1 111078954 90883934 7 +- 1.549826 5 0 5 5 12 TCGA-DX-A23V-01A-11R-A29R-07 TPCN1~Nchr1~91176322 intergenic "TPCN1," "-," chr12~chr1 113664769 91176322 44 ++ 2.811036 40 12 28 40 158 TCGA-DX-A23V-01A-11R-A29R-07 TRHDE~ANKS1B fusion "TRHDE," "ANKS1B," chr12~chr12 72956820 99145300 2 +- 0.693147 1 1 0 1 16 TCGA-DX-A23V-01A-11R-A29R-07 TSPAN31~WIF1 fusion "TSPAN31," "WIF1," chr12~chr12 58140914 65471634 90 +- 2.943677 90 44 46 90 430 TCGA-DX-A23V-01A-11R-A29R-07 TSPAN31~WIF1 fusion "TSPAN31," "WIF1," chr12~chr12 58140914 65476496 2 +- 0.693147 2 2 0 2 6 TCGA-DX-A23V-01A-11R-A29R-07 TSPAN31~WIF1 fusion "TSPAN31," "WIF1," chr12~chr12 58140914 65480155 325 +- 3.095278 307 158 149 307 1592 TCGA-DX-A23V-01A-11R-A29R-07 USP15~Nchr12~58374207 intergenic "USP15," "-," chr12~chr12 62743088 58374207 8 ++ 1.494175 4 3 1 4 18 TCGA-DX-A23V-01A-11R-A29R-07 YEATS4~C12orf48 fusion "YEATS4," "C12orf48," chr12~chr12 69756687 102589729 158 ++ 3.210502 158 64 92 158 658 TCGA-DX-A23V-01A-11R-A29R-07 YEATS4~Nchr12~60918165 intergenic "YEATS4," "-," chr12~chr12 69756687 60918165 28 ++ 2.434665 29 22 6 29 102 TCGA-DX-A23V-01A-11R-A29R-07 YEATS4~USP15 fusion "YEATS4," "USP15," chr12~chr12 69756687 62719653 24 ++ 2.578629 15 3 12 15 44 TCGA-KD-A5QT-01A-11R-A27Q-07 ADAMTS5~Nchr21~28543481 intergenic "ADAMTS5," "-," chr21~chr21 28338443 28543481 6 ++ 1.329661 4 2 2 4 10 TCGA-KD-A5QT-01A-11R-A27Q-07 ARHGAP44~ZSWIM7 fusion "ARHGAP44," "ZSWIM7," chr17~chr17 12823148 15884458 7 +- 0.9557 7 0 7 7 38 TCGA-KD-A5QT-01A-11R-A27Q-07 ARHGAP44~ZSWIM7 fusion "ARHGAP44," "ZSWIM7," chr17~chr17 12832363 15884458 15 +- 2.083766 15 3 12 15 74 TCGA-KD-A5QT-01A-11R-A27Q-07 ATF6~Nchr15~26507416 intergenic "ATF6," "-," chr1~chr15 161833102 26507416 15 +- 2.211069 15 12 3 15 68 TCGA-KD-A5QT-01A-11R-A27Q-07 C15orf57~CBX3 fusion "C15orf57," "CBX3," chr15~chr7 40854971 26241389 2 -+ 0.693147 1 1 0 1 6 TCGA-KD-A5QT-01A-11R-A27Q-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 100 -- 2.004802 100 100 0 100 4 TCGA-KD-A5QT-01A-11R-A27Q-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 25 -- 1.784862 24 0 23 24 16 TCGA-KD-A5QT-01A-11R-A27Q-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 121 -- 2.572053 65 10 55 65 4 TCGA-KD-A5QT-01A-11R-A27Q-07 HS6ST3~FAM155A fusion "HS6ST3," "FAM155A," chr13~chr13 96743823 107823134 27 +- 2.240214 27 11 16 27 68 TCGA-KD-A5QT-01A-11R-A27Q-07 HS6ST3~FAM155A fusion "HS6ST3," "FAM155A," chr13~chr13 96743823 107824922 3 +- 0.636514 3 1 2 3 64 TCGA-KD-A5QT-01A-11R-A27Q-07 NUF2~Nchr1~164717894 intergenic "NUF2," "-," chr1~chr1 163317728 164717894 9 ++ 1.676988 9 2 7 9 10 TCGA-KD-A5QT-01A-11R-A27Q-07 Nchr10~77272535~C10orf11 intergenic "-," "C10orf11," chr10~chr10 77272535 77795766 3 ++ 0.636514 3 0 3 3 6 TCGA-KD-A5QT-01A-11R-A27Q-07 Nchr11~27603245~RPS25 intergenic "-," "RPS25," chr11~chr11 27603245 118889038 2 -- 0.693147 2 1 1 2 286 TCGA-KD-A5QT-01A-11R-A27Q-07 Nchr11~47213097~RPS20 intergenic "-," "RPS20," chr11~chr8 47213097 56986962 2 +- 0.693147 2 0 2 2 10 TCGA-KD-A5QT-01A-11R-A27Q-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 25 -+ 2.344618 14 0 13 14 20 TCGA-KD-A5QT-01A-11R-A27Q-07 Nchr14~106444660~Nchr14~106444858 intergenic "-," "-," chr14~chr14 106444660 106444858 6 -- 1.56071 6 0 6 6 2 TCGA-KD-A5QT-01A-11R-A27Q-07 Nchr16~79619777~Nchr16~79246798 intergenic "-," "-," chr16~chr16 79619777 79246798 6 -- 1.242453 6 3 3 6 8 TCGA-KD-A5QT-01A-11R-A27Q-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 3 ++ 1.098612 3 1 2 3 10 TCGA-KD-A5QT-01A-11R-A27Q-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 7 ++ 1.475076 7 1 6 7 6 TCGA-KD-A5QT-01A-11R-A27Q-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151282 11 -- 1.84622 7 3 4 7 40 TCGA-KD-A5QT-01A-11R-A27Q-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 31 -- 2.604012 15 5 10 15 40 TCGA-KD-A5QT-01A-11R-A27Q-07 Nchr1~187042156~RP11-445P19.1 intergenic "-," "RP11-445P19.1," chr1~chr1 187042156 187412760 5 ++ 0.673012 5 5 0 5 38 TCGA-KD-A5QT-01A-11R-A27Q-07 Nchr5~113441478~Nchr5~113696642 intergenic "-," "-," chr5~chr5 113441478 113696642 6 ++ 1.242453 6 2 4 6 30 TCGA-KD-A5QT-01A-11R-A27Q-07 Nchr7~140912504~Nchr7~141137408 intergenic "-," "-," chr7~chr7 140912504 141137408 15 ++ 2.153532 8 2 6 8 12 TCGA-KD-A5QT-01A-11R-A27Q-07 Nchr8~128691459~Nchr8~128433208 intergenic "-," "-," chr8~chr8 128691459 128433208 3 -- 0.636514 2 2 0 2 10 TCGA-KD-A5QT-01A-11R-A27Q-07 Nchr9~19200532~RPS6 intergenic "-," "RPS6," chr9~chr9 19200532 19378478 3 -- 0.636514 3 0 3 3 48 TCGA-KD-A5QT-01A-11R-A27Q-07 Nchr9~29212920~Nchr9~28947912 intergenic "-," "-," chr9~chr9 29212920 28947912 13 -- 2.245035 9 0 9 9 6 TCGA-KD-A5QT-01A-11R-A27Q-07 Nchr9~78271710~PCSK5 intergenic "-," "PCSK5," chr9~chr9 78271710 78547295 2 ++ 0.693147 2 2 0 2 6 TCGA-KD-A5QT-01A-11R-A27Q-07 NchrX~33742075~NchrX~33428291 intergenic "-," "-," chrX~chrX 33742075 33428291 2 -- 0.693147 2 1 1 2 2 TCGA-KD-A5QT-01A-11R-A27Q-07 PPIL2~Nchr2~83946331 intergenic "PPIL2," "-," chr22~chr2 22043138 83946331 4 ++ 1.039721 4 0 4 4 10 TCGA-KD-A5QT-01A-11R-A27Q-07 RP11-47P18.2~RP11-6B4.1 fusion "RP11-47P18.2," "RP11-6B4.1," chr3~chr3 80820106 81144263 3 ++ 0.636514 3 0 3 3 2 TCGA-KD-A5QT-01A-11R-A27Q-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 3 ++ 1.098612 3 2 1 3 30 TCGA-KD-A5QT-01A-11R-A27Q-07 TCF7L1~Nchr6~133125233 intergenic "TCF7L1," "-," chr2~chr6 85361573 133125233 7 ++ 1.747868 5 3 2 5 24 TCGA-KD-A5QT-01A-11R-A27Q-07 TPM2~TAGLN fusion "TPM2," "TAGLN," chr9~chr11 35685644 117074950 4 -+ 1.039721 3 1 2 3 2 TCGA-KD-A5QT-01A-11R-A27Q-07 YPEL1~DIAPH3 fusion "YPEL1," "DIAPH3," chr22~chr13 22089904 60240980 8 -- 1.906155 8 8 0 8 2 TCGA-KD-A5QT-01A-11R-A27Q-07 ZNF208~AC010127.3 fusion "ZNF208," "AC010127.3," chr19~chr2 22193594 167151075 30 -+ 2.478583 29 9 19 29 82 TCGA-KD-A5QU-01A-11R-A27Q-07 AC007392.3~AC007403.2 fusion "AC007392.3," "AC007403.2," chr2~chr2 66918855 67172420 3 ++ 0.636514 3 2 1 3 4 TCGA-KD-A5QU-01A-11R-A27Q-07 CDH3~CNN2 fusion "CDH3," "CNN2," chr16~chr19 68685807 1026635 3 ++ 0.636514 3 0 3 3 2 TCGA-KD-A5QU-01A-11R-A27Q-07 COL4A5~Nchr5~96577218 intergenic "COL4A5," "-," chrX~chr5 107683436 96577218 7 +- 1.747868 5 1 4 5 16 TCGA-KD-A5QU-01A-11R-A27Q-07 CPD~Nchr17~32983162 intergenic "CPD," "-," chr17~chr17 28712254 32983162 25 +- 2.231567 24 14 10 24 62 TCGA-KD-A5QU-01A-11R-A27Q-07 DACH1~TNFSF11 fusion "DACH1," "TNFSF11," chr13~chr13 72204688 43180633 2 -+ 0.693147 2 1 1 2 26 TCGA-KD-A5QU-01A-11R-A27Q-07 DGKH~Nchr13~112234873 intergenic "DGKH," "-," chr13~chr13 42769152 112234873 19 ++ 2.128549 16 6 10 16 46 TCGA-KD-A5QU-01A-11R-A27Q-07 DGKH~Nchr13~112268119 intergenic "DGKH," "-," chr13~chr13 42769152 112268119 3 ++ 0.636514 3 3 0 3 4 TCGA-KD-A5QU-01A-11R-A27Q-07 DGKH~Nchr13~112287651 intergenic "DGKH," "-," chr13~chr13 42769152 112287651 7 ++ 1.549826 7 2 5 7 32 TCGA-KD-A5QU-01A-11R-A27Q-07 DLG4~KRT8 fusion "DLG4," "KRT8," chr17~chr12 7120437 53298863 5 -- 0.500402 4 0 4 4 108 TCGA-KD-A5QU-01A-11R-A27Q-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 144 -- 2.025679 144 144 0 144 102 TCGA-KD-A5QU-01A-11R-A27Q-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31239047 31324166 2 -- 0.693147 2 2 0 2 8 TCGA-KD-A5QU-01A-11R-A27Q-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32487941 32548633 99 -- 2.18641 20 8 12 20 18 TCGA-KD-A5QU-01A-11R-A27Q-07 KLF6~Nchr10~3391767 intergenic "KLF6," "-," chr10~chr10 3827105 3391767 13 -+ 1.631345 12 6 6 12 30 TCGA-KD-A5QU-01A-11R-A27Q-07 KLF6~Nchr10~3440274 intergenic "KLF6," "-," chr10~chr10 3827105 3440274 23 -+ 2.13738 21 10 11 21 68 TCGA-KD-A5QU-01A-11R-A27Q-07 KLF6~Nchr10~3483657 intergenic "KLF6," "-," chr10~chr10 3827105 3483657 12 -+ 1.979205 12 4 8 12 10 TCGA-KD-A5QU-01A-11R-A27Q-07 KLF6~Nchr10~3483660 intergenic "KLF6," "-," chr10~chr10 3827105 3483660 4 -+ 1.039721 4 2 2 4 8 TCGA-KD-A5QU-01A-11R-A27Q-07 MAST2~NASP fusion "MAST2," "NASP," chr1~chr1 46295253 46078841 7 ++ 1.078992 7 2 5 7 18 TCGA-KD-A5QU-01A-11R-A27Q-07 MAST2~NASP fusion "MAST2," "NASP," chr1~chr1 46295253 46079768 2 ++ 0.693147 2 2 0 2 22 TCGA-KD-A5QU-01A-11R-A27Q-07 NCRNA00238~Nchr14~66724179 intergenic "NCRNA00238," "-," chr14~chr14 66962980 66724179 2 -- 0.693147 2 1 1 2 12 TCGA-KD-A5QU-01A-11R-A27Q-07 Nchr11~47213097~RPS20 intergenic "-," "RPS20," chr11~chr8 47213097 56986962 2 +- 0.693147 1 0 1 1 48 TCGA-KD-A5QU-01A-11R-A27Q-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 93 -+ 2.01702 34 0 33 34 106 TCGA-KD-A5QU-01A-11R-A27Q-07 Nchr14~38618451~Nchr14~38840973 intergenic "-," "-," chr14~chr14 38618451 38840973 2 ++ 0.693147 2 0 2 2 2 TCGA-KD-A5QU-01A-11R-A27Q-07 Nchr15~21916043~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21916043 20876597 10 -- 1.418484 8 5 3 8 28 TCGA-KD-A5QU-01A-11R-A27Q-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 20 -+ 2.415052 20 8 12 20 382 TCGA-KD-A5QU-01A-11R-A27Q-07 Nchr1~173431463~TNFSF4 intergenic "-," "TNFSF4," chr1~chr1 173431463 173176324 3 -- 1.098612 3 2 1 3 12 TCGA-KD-A5QU-01A-11R-A27Q-07 Nchr2~154265755~Nchr2~154589282 intergenic "-," "-," chr2~chr2 154265755 154589282 25 ++ 2.442551 10 9 1 10 14 TCGA-KD-A5QU-01A-11R-A27Q-07 Nchr2~40944560~Nchr2~41219523 intergenic "-," "-," chr2~chr2 40944560 41219523 16 ++ 1.836422 16 12 4 16 32 TCGA-KD-A5QU-01A-11R-A27Q-07 Nchr3~59129508~Nchr3~59347226 intergenic "-," "-," chr3~chr3 59129508 59347226 21 ++ 2.11159 3 0 3 3 4 TCGA-KD-A5QU-01A-11R-A27Q-07 Nchr3~59138755~Nchr3~59347226 intergenic "-," "-," chr3~chr3 59138755 59347226 34 ++ 2.271285 5 5 0 5 12 TCGA-KD-A5QU-01A-11R-A27Q-07 Nchr3~59138755~Nchr3~59522659 intergenic "-," "-," chr3~chr3 59138755 59522659 6 ++ 1.329661 3 3 0 3 2 TCGA-KD-A5QU-01A-11R-A27Q-07 Nchr3~59498442~Nchr3~59721945 intergenic "-," "-," chr3~chr3 59498442 59721945 6 ++ 1.011404 2 0 2 2 14 TCGA-KD-A5QU-01A-11R-A27Q-07 Nchr3~59522723~FHIT intergenic "-," "FHIT," chr3~chr3 59522723 59756474 5 ++ 1.332179 4 0 4 4 8 TCGA-KD-A5QU-01A-11R-A27Q-07 Nchr3~59522723~FHIT intergenic "-," "FHIT," chr3~chr3 59522723 59795458 56 ++ 2.396605 44 9 35 44 106 TCGA-KD-A5QU-01A-11R-A27Q-07 Nchr3~59522723~FHIT intergenic "-," "FHIT," chr3~chr3 59522723 59810355 2 ++ 0.693147 2 1 1 2 14 TCGA-KD-A5QU-01A-11R-A27Q-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 5 -- 0.673012 5 5 0 5 4 TCGA-KD-A5QU-01A-11R-A27Q-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 37 ++ 2.106179 28 27 1 28 16 TCGA-KD-A5QU-01A-11R-A27Q-07 Nchr7~9999870~AC060834.3 intergenic "-," "AC060834.3," chr7~chr7 9999870 9799692 3 -- 0.636514 3 0 3 3 2 TCGA-KD-A5QU-01A-11R-A27Q-07 Nchr8~101476642~COX6C intergenic "-," "COX6C," chr8~chr8 101476642 100904280 7 +- 1.277034 6 6 0 6 8 TCGA-KD-A5QU-01A-11R-A27Q-07 Nchr9~25891606~Nchr9~25422695 intergenic "-," "-," chr9~chr9 25891606 25422695 16 -- 1.646225 16 11 5 16 74 TCGA-KD-A5QU-01A-11R-A27Q-07 Nchr9~25891606~Nchr9~25649034 intergenic "-," "-," chr9~chr9 25891606 25649034 6 -- 1.011404 6 5 1 6 12 TCGA-KD-A5QU-01A-11R-A27Q-07 PAM~Nchr5~97601648 intergenic "PAM," "-," chr5~chr5 102286524 97601648 3 ++ 1.098612 1 1 0 1 8 TCGA-KD-A5QU-01A-11R-A27Q-07 PAM~Nchr5~97655342 intergenic "PAM," "-," chr5~chr5 102286524 97655342 4 ++ 1.039721 4 2 2 4 6 TCGA-KD-A5QU-01A-11R-A27Q-07 PAM~Nchr5~97656703 intergenic "PAM," "-," chr5~chr5 102286524 97656703 2 ++ 0.693147 2 1 1 2 6 TCGA-KD-A5QU-01A-11R-A27Q-07 PAM~Nchr5~97671973 intergenic "PAM," "-," chr5~chr5 102286524 97671973 19 ++ 2.086769 19 11 8 19 46 TCGA-KD-A5QU-01A-11R-A27Q-07 PDE4D~C4orf14 fusion "PDE4D," "C4orf14," chr5~chr4 58476421 57840188 4 -- 0.562335 4 1 3 4 18 TCGA-KD-A5QU-01A-11R-A27Q-07 RP11-296O14.3~TNFSF4 fusion "RP11-296O14.3," "TNFSF4," chr1~chr1 173393013 173157708 4 -- 1.386294 3 1 2 3 12 TCGA-KD-A5QU-01A-11R-A27Q-07 RP11-443A13.2~KCNMA1 fusion "RP11-443A13.2," "KCNMA1," chr10~chr10 78648039 78674807 16 +- 1.906155 15 9 6 15 28 TCGA-KD-A5QU-01A-11R-A27Q-07 RPS6~Nchr9~19200482 intergenic "RPS6," "-," chr9~chr9 19376625 19200482 3 ++ 0.636514 2 2 0 2 20 TCGA-KD-A5QU-01A-11R-A27Q-07 SERAC1~Nchr6~109020057 intergenic "SERAC1," "-," chr6~chr6 158579305 109020057 15 -- 1.898927 15 11 4 15 42 TCGA-KD-A5QU-01A-11R-A27Q-07 SPATS2L~FAM126B fusion "SPATS2L," "FAM126B,AC005037.3," chr2~chr2 201194203 201873709 7 ++ 1.747868 5 2 3 5 14 TCGA-KD-A5QU-01A-11R-A27Q-07 TP53~DUS3L fusion "WRAP53,TP53," "DUS3L," chr17~chr19 7590695 5788187 11 -- 2.019815 11 1 10 11 98 TCGA-KD-A5QU-01A-11R-A27Q-07 TP53~DUS3L fusion "WRAP53,TP53," "DUS3L," chr17~chr19 7590695 5788409 21 -- 1.908871 18 3 15 18 138 TCGA-KD-A5QS-01A-11R-A27Q-07 ADK~Nchr10~78624014 intergenic "ADK," "-," chr10~chr10 76360251 78624014 6 ++ 0.636514 6 3 3 6 6 TCGA-KD-A5QS-01A-11R-A27Q-07 AMOTL1~PIWIL4 fusion "AMOTL1," "PIWIL4," chr11~chr11 94501726 94340605 3 ++ 1.098612 3 2 1 3 4 TCGA-KD-A5QS-01A-11R-A27Q-07 AMOTL1~PIWIL4 fusion "AMOTL1," "PIWIL4," chr11~chr11 94501726 94349659 3 ++ 0.636514 3 2 1 3 2 TCGA-KD-A5QS-01A-11R-A27Q-07 AP000473.6~Nchr21~17968795 intergenic "AP000473.6," "-," chr21~chr21 18187349 17968795 2 -- 0.693147 2 2 0 2 4 TCGA-KD-A5QS-01A-11R-A27Q-07 ARHGEF7~Nchr13~48095739 intergenic "ARHGEF7," "-," chr13~chr13 111806338 48095739 7 +- 1.549826 4 0 4 4 68 TCGA-KD-A5QS-01A-11R-A27Q-07 ARHGEF7~Nchr13~48100060 intergenic "ARHGEF7," "-," chr13~chr13 111806338 48100060 4 +- 0.562335 4 3 1 4 10 TCGA-KD-A5QS-01A-11R-A27Q-07 ARHGEF7~Nchr13~48247586 intergenic "ARHGEF7," "-," chr13~chr13 111806338 48247586 3 +- 1.098612 3 1 2 3 12 TCGA-KD-A5QS-01A-11R-A27Q-07 C15orf57~CBX3 fusion "C15orf57," "CBX3," chr15~chr7 40854971 26241389 2 -+ 0.693147 2 1 1 2 14 TCGA-KD-A5QS-01A-11R-A27Q-07 CHSY3~RBM22 fusion "CHSY3," "RBM22," chr5~chr5 129244053 150078193 22 +- 2.389557 22 3 19 22 110 TCGA-KD-A5QS-01A-11R-A27Q-07 CHSY3~RBM22 fusion "CHSY3," "RBM22," chr5~chr5 129244053 150078833 11 +- 1.972247 11 7 4 11 100 TCGA-KD-A5QS-01A-11R-A27Q-07 CHSY3~SKP1 fusion "CHSY3," "SKP1," chr5~chr5 129244053 133509713 2 +- 0.693147 2 0 2 2 2 TCGA-KD-A5QS-01A-11R-A27Q-07 DGKH~Nchr13~24701872 intergenic "DGKH," "-," chr13~chr13 42623101 24701872 8 +- 1.320888 8 4 4 8 6 TCGA-KD-A5QS-01A-11R-A27Q-07 FAM118A~VAPB fusion "FAM118A," "VAPB," chr22~chr20 45706064 57009658 3 ++ 1.098612 3 3 0 3 28 TCGA-KD-A5QS-01A-11R-A27Q-07 FAM118A~VAPB fusion "FAM118A," "VAPB," chr22~chr20 45714841 57009658 2 ++ 0.693147 2 0 2 2 4 TCGA-KD-A5QS-01A-11R-A27Q-07 FAM118A~VAPB fusion "FAM118A," "VAPB," chr22~chr20 45706064 57014001 4 ++ 0.562335 4 3 1 4 18 TCGA-KD-A5QS-01A-11R-A27Q-07 FBXW7~Nchr1~101732946 intergenic "FBXW7," "-," chr4~chr1 153456093 101732946 7 -- 1.351784 7 2 5 7 2 TCGA-KD-A5QS-01A-11R-A27Q-07 GPC5~GPC5-IT1 fusion "GPC5," "GPC5-IT1," chr13~chr13 92797242 93161766 4 ++ 0.562335 1 0 1 1 14 TCGA-KD-A5QS-01A-11R-A27Q-07 HELZ~Nchr17~32983162 intergenic "HELZ," "-," chr17~chr17 65214711 32983162 18 -- 1.748547 16 8 8 16 42 TCGA-KD-A5QS-01A-11R-A27Q-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 205 -- 2.286178 205 205 0 205 28 TCGA-KD-A5QS-01A-11R-A27Q-07 HLA-L~Nchr6~29864828 intergenic "HLA-L," "-," chr6~chr6 30229256 29864828 171 ++ 2.097984 30 29 1 30 24 TCGA-KD-A5QS-01A-11R-A27Q-07 KIAA1033~PRDM4 fusion "KIAA1033," "PRDM4," chr12~chr12 105514982 108147886 2 +- 0.693147 2 1 1 2 8 TCGA-KD-A5QS-01A-11R-A27Q-07 NCRNA00238~Nchr14~66724179 intergenic "NCRNA00238," "-," chr14~chr14 66962980 66724179 3 -- 1.098612 3 2 1 3 16 TCGA-KD-A5QS-01A-11R-A27Q-07 Nchr13~24558072~SUCLA2 intergenic "-," "SUCLA2," chr13~chr13 24558072 48547527 5 +- 1.05492 5 5 0 5 4 TCGA-KD-A5QS-01A-11R-A27Q-07 Nchr13~48092921~Nchr13~47825494 intergenic "-," "-," chr13~chr13 48092921 47825494 7 -- 1.747868 2 0 2 2 24 TCGA-KD-A5QS-01A-11R-A27Q-07 Nchr14~82540339~Nchr14~82891079 intergenic "-," "-," chr14~chr14 82540339 82891079 8 ++ 1.906155 1 0 1 1 6 TCGA-KD-A5QS-01A-11R-A27Q-07 Nchr2~81775871~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81775871 82075877 14 ++ 2.205598 10 3 7 10 20 TCGA-KD-A5QS-01A-11R-A27Q-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 3 ++ 1.098612 3 3 0 3 6 TCGA-KD-A5QS-01A-11R-A27Q-07 OSBPL8~Nchr12~77931188 intergenic "OSBPL8," "-," chr12~chr12 76788425 77931188 21 -+ 2.268535 19 14 5 19 66 TCGA-KD-A5QS-01A-11R-A27Q-07 RB1~Nchr13~34597956 intergenic "RB1," "-," chr13~chr13 48955579 34597956 7 +- 1.747868 6 3 3 6 18 TCGA-KD-A5QS-01A-11R-A27Q-07 RNASEH2B~Nchr13~32056835 intergenic "RNASEH2B," "-," chr13~chr13 51523641 32056835 13 +- 1.778233 12 5 7 12 14 TCGA-KD-A5QS-01A-11R-A27Q-07 RNF19A~KB-173C10.2 fusion "RNF19A," "KB-173C10.2," chr8~chr8 101322095 101393999 6 -- 1.549826 7 1 5 7 24 TCGA-KD-A5QS-01A-11R-A27Q-07 RNPEP~PLEKHA6 fusion "RNPEP," "PLEKHA6," chr1~chr1 201958704 204230636 2 +- 0.693147 2 1 1 2 2 TCGA-KD-A5QS-01A-11R-A27Q-07 SGIP1~Nchr1~66905123 intergenic "SGIP1," "-," chr1~chr1 67000051 66905123 18 ++ 2.120208 16 5 11 16 40 TCGA-KD-A5QS-01A-11R-A27Q-07 STRN~HEATR5B fusion "STRN," "HEATR5B," chr2~chr2 37193373 37216002 17 -- 2.068513 16 3 13 16 2 TCGA-KD-A5QS-01A-11R-A27Q-07 SUCLG2~RP11-501O2.3 fusion "SUCLG2," "RP11-501O2.3," chr3~chr3 67659879 147944164 16 -+ 2.220025 15 9 6 15 74 TCGA-PC-A5DP-01A-11R-A26T-07 C15orf41~Nchr15~36782415 intergenic "C15orf41," "-," chr15~chr15 36872162 36782415 8 ++ 1.906155 8 3 5 8 10 TCGA-PC-A5DP-01A-11R-A26T-07 CADPS2~Nchr7~121337089 intergenic "CADPS2," "-," chr7~chr7 122019422 121337089 3 -- 0.636514 3 1 2 3 18 TCGA-PC-A5DP-01A-11R-A26T-07 HEATR8~Nchr7~39873446 intergenic "HEATR8,TTC4,HEATR8,TTC4," "-," chr1~chr7 55199383 39873446 7 ++ 0.59827 3 1 2 3 2 TCGA-PC-A5DP-01A-11R-A26T-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 28 -- 2.174775 28 28 0 28 2 TCGA-PC-A5DP-01A-11R-A26T-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 49 -- 2.328424 33 5 26 33 2 TCGA-PC-A5DP-01A-11R-A26T-07 LTBP1~Nchr2~147668533 intergenic "LTBP1," "-," chr2~chr2 33590570 147668533 10 +- 1.834372 10 7 3 10 36 TCGA-PC-A5DP-01A-11R-A26T-07 Nchr10~47655224~ZNF488 intergenic "-," "ZNF488," chr10~chr10 47655224 48359418 3 -- 1.098612 2 2 0 2 4 TCGA-PC-A5DP-01A-11R-A26T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 21 -+ 1.94591 12 0 12 12 12 TCGA-PC-A5DP-01A-11R-A26T-07 Nchr15~21916043~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21916043 20876597 8 -- 1.494175 8 5 3 8 40 TCGA-PC-A5DP-01A-11R-A26T-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 14 -+ 2.341994 13 6 7 13 334 TCGA-PC-A5DP-01A-11R-A26T-07 Nchr5~148801067~Nchr5~148803674 intergenic "-," "-," chr5~chr5 148801067 148803674 2 -+ 0.693147 1 1 0 1 8 TCGA-PC-A5DP-01A-11R-A26T-07 Nchr5~163136517~TPM2 intergenic "-," "TPM2," chr5~chr9 163136517 35685283 4 ++ 1.039721 1 0 1 1 32 TCGA-PC-A5DP-01A-11R-A26T-07 Nchr5~43711910~RGMB intergenic "-," "RGMB," chr5~chr5 43711910 98115792 7 +- 1.747868 7 5 2 7 12 TCGA-PC-A5DP-01A-11R-A26T-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40768381 12 ++ 1.979205 4 0 4 4 20 TCGA-PC-A5DP-01A-11R-A26T-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 198 ++ 2.703345 20 2 18 20 16 TCGA-PC-A5DP-01A-11R-A26T-07 Nchr9~29212920~Nchr9~28947912 intergenic "-," "-," chr9~chr9 29212920 28947912 3 -- 0.636514 3 2 1 3 2 TCGA-PC-A5DP-01A-11R-A26T-07 NchrX~3900834~PRPS2 intergenic "-," "PRPS2," chrX~chrX 3900834 12809621 5 ++ 1.05492 5 5 0 5 12 TCGA-PC-A5DP-01A-11R-A26T-07 PCSK7~CALD1 fusion "TAGLN,PCSK7,TAGLN," "CALD1," chr11~chr7 117075249 134618588 3 -+ 0.636514 3 0 3 3 4 TCGA-PC-A5DP-01A-11R-A26T-07 RALYL~Nchr8~126635190 intergenic "RALYL," "-," chr8~chr8 85441812 126635190 11 +- 1.84622 10 4 6 10 24 TCGA-PC-A5DP-01A-11R-A26T-07 RP11-335L9.1~Nchr3~177483365 intergenic "RP11-335L9.1," "-," chr3~chr3 177257281 177483365 2 ++ 0.693147 1 0 1 1 10 TCGA-PC-A5DP-01A-11R-A26T-07 RP4-660H19.1~Nchr1~72984871 intergenic "RP4-660H19.1," "-," chr1~chr1 73214849 72984871 3 -- 1.098612 1 0 1 1 12 TCGA-PC-A5DP-01A-11R-A26T-07 TPM2~ACTG1 fusion "TPM2," "ACTG1," chr9~chr17 35685061 79478652 2 -- 0.693147 1 0 1 1 18 TCGA-PC-A5DP-01A-11R-A26T-07 TPM2~TPM4 fusion "TPM2," "TPM4," chr9~chr19 35685539 16186929 5 -+ 1.332179 4 1 3 4 4 TCGA-HS-A5N7-01A-21R-A26T-07 AMFR~PLLP fusion "AMFR," "PLLP," chr16~chr16 56435645 57295982 2 -- 0.693147 2 2 0 2 28 TCGA-HS-A5N7-01A-21R-A26T-07 CSPG5~Nchr3~47602888 intergenic "CSPG5," "-," chr3~chr3 47614176 47602888 18 -+ 2.245172 16 1 15 16 24 TCGA-HS-A5N7-01A-21R-A26T-07 MINPP1~Nchr10~89817751 intergenic "MINPP1," "-," chr10~chr10 89280926 89817751 5 ++ 1.05492 5 5 0 5 38 TCGA-HS-A5N7-01A-21R-A26T-07 NUDT21~BBS2 fusion "NUDT21," "BBS2," chr16~chr16 56473569 56518779 261 -- 2.813501 258 132 123 258 6 TCGA-HS-A5N7-01A-21R-A26T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 75 -+ 2.325051 34 0 34 34 44 TCGA-HS-A5N7-01A-21R-A26T-07 Nchr1~171639784~Nchr1~171639676 intergenic "-," "-," chr1~chr1 171639784 171639676 2 ++ 0.693147 2 0 2 2 10 TCGA-HS-A5N7-01A-21R-A26T-07 Nchr1~76081538~SLC44A5 intergenic "-," "SLC44A5," chr1~chr1 76081538 75805315 5 -- 1.332179 2 2 0 2 2 TCGA-HS-A5N7-01A-21R-A26T-07 Nchr8~111072916~Nchr8~111275244 intergenic "-," "-," chr8~chr8 111072916 111275244 3 ++ 0.636514 3 3 0 3 4 TCGA-HS-A5N7-01A-21R-A26T-07 NchrX~23288168~NchrX~23082238 intergenic "-," "-," chrX~chrX 23288168 23082238 5 -- 1.332179 4 0 4 4 2 TCGA-HS-A5N7-01A-21R-A26T-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 9 ++ 1.522955 7 2 5 7 6 TCGA-PC-A5DO-01A-11R-A26T-07 CYP7B1~EPS15 fusion "CYP7B1," "EPS15," chr8~chr1 65517239 51946986 6 -- 1.56071 5 4 1 5 42 TCGA-PC-A5DO-01A-11R-A26T-07 EPS15~CYP7B1 fusion "EPS15," "CYP7B1," chr1~chr8 51984871 65517414 5 -- 1.332179 2 0 2 2 14 TCGA-PC-A5DO-01A-11R-A26T-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 136 -- 2.218813 135 135 0 135 148 TCGA-PC-A5DO-01A-11R-A26T-07 MPP7~Nchr10~11215388 intergenic "MPP7," "-," chr10~chr10 28527497 11215388 11 -- 1.672625 8 4 4 8 16 TCGA-PC-A5DO-01A-11R-A26T-07 MPP7~Nchr10~11235230 intergenic "MPP7," "-," chr10~chr10 28527497 11235230 8 -- 1.255482 7 7 0 7 70 TCGA-PC-A5DO-01A-11R-A26T-07 MPP7~Nchr10~11241476 intergenic "MPP7," "-," chr10~chr10 28527497 11241476 29 -- 2.641534 25 14 11 25 88 TCGA-PC-A5DO-01A-11R-A26T-07 Nchr11~27603245~RPS25 intergenic "-," "RPS25," chr11~chr11 27603245 118889038 15 -- 2.083766 15 3 12 15 190 TCGA-PC-A5DO-01A-11R-A26T-07 Nchr11~65190797~Nchr11~65190900 intergenic "-," "-," chr11~chr11 65190797 65190900 10 -- 1.418484 9 0 9 9 2 TCGA-PC-A5DO-01A-11R-A26T-07 Nchr14~99439513~Nchr14~99439316 intergenic "-," "-," chr14~chr14 99439513 99439316 3 ++ 0.636514 3 0 3 3 22 TCGA-PC-A5DO-01A-11R-A26T-07 Nchr15~21916043~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21916043 20876597 9 -- 1.889159 9 6 3 9 22 TCGA-PC-A5DO-01A-11R-A26T-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 2 ++ 0.693147 2 0 2 2 6 TCGA-PC-A5DO-01A-11R-A26T-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 1 -+ 0 1 1 0 1 6 TCGA-PC-A5DO-01A-11R-A26T-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145013721 2 -+ 0.693147 2 1 1 2 62 TCGA-PC-A5DO-01A-11R-A26T-07 Nchr1~171639683~Nchr1~171639790 intergenic "-," "-," chr1~chr1 171639683 171639790 3 -- 1.098612 2 0 2 2 8 TCGA-PC-A5DO-01A-11R-A26T-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 104 ++ 2.713569 7 0 7 7 2 TCGA-PC-A5DO-01A-11R-A26T-07 Nchr8~111072916~Nchr8~111275244 intergenic "-," "-," chr8~chr8 111072916 111275244 3 ++ 0.636514 3 3 0 3 8 TCGA-PC-A5DO-01A-11R-A26T-07 RP11-335L9.1~Nchr3~177483365 intergenic "RP11-335L9.1," "-," chr3~chr3 177159898 177483365 5 ++ 1.05492 5 4 1 5 46 TCGA-PC-A5DO-01A-11R-A26T-07 RP11-371M22.1~Nchr5~113696642 intergenic "RP11-371M22.1," "-," chr5~chr5 113392868 113696642 2 ++ 0.693147 2 2 0 2 2 TCGA-PC-A5DO-01A-11R-A26T-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 3 ++ 1.098612 3 2 1 3 8 TCGA-PC-A5DO-01A-11R-A26T-07 RP4-633O19__A.1~Nchr22~36673528 intergenic "RP4-633O19__A.1," "-," chr22~chr22 36792260 36673528 16 ++ 1.840749 16 10 6 16 42 TCGA-PC-A5DO-01A-11R-A26T-07 RP4-660H19.1~Nchr1~72984871 intergenic "RP4-660H19.1," "-," chr1~chr1 73214849 72984871 3 -- 0.636514 3 1 2 3 2 TCGA-PC-A5DO-01A-11R-A26T-07 SPECC1~Nchr17~10848512 intergenic "SPECC1," "-," chr17~chr17 20013875 10848512 12 ++ 1.979205 12 8 4 12 44 TCGA-PC-A5DO-01A-11R-A26T-07 TOP2A~TNS4 fusion "TOP2A," "TNS4," chr17~chr17 38545768 38640861 6 -- 1.56071 6 3 3 6 22 TCGA-PC-A5DN-01A-12R-A27Q-07 AC023055.2~Nchr12~79902501 intergenic "AC023055.2," "-," chr12~chr12 56227325 79902501 9 ++ 1.889159 9 5 4 9 8 TCGA-PC-A5DN-01A-12R-A27Q-07 ACADS~NUAK1 fusion "ACADS," "NUAK1," chr12~chr12 121164992 106466621 3 +- 0.636514 3 2 1 3 2 TCGA-PC-A5DN-01A-12R-A27Q-07 ANAPC5~Nchr12~14407841 intergenic "ANAPC5," "-," chr12~chr12 121769150 14407841 10 -+ 1.886697 10 5 5 10 250 TCGA-PC-A5DN-01A-12R-A27Q-07 ANAPC5~Nchr12~14407841 intergenic "ANAPC5," "-," chr12~chr12 121773336 14407841 61 -+ 2.772038 60 25 34 60 234 TCGA-PC-A5DN-01A-12R-A27Q-07 ANAPC5~ZFAND3 fusion "ANAPC5," "ZFAND3," chr12~chr6 121773336 37830754 3 -+ 0.636514 3 0 3 3 4 TCGA-PC-A5DN-01A-12R-A27Q-07 ANO2~NUDT3 fusion "ANO2," "NUDT3," chr12~chr6 5915218 34263462 32 -- 2.262183 30 13 17 30 56 TCGA-PC-A5DN-01A-12R-A27Q-07 ATF7IP~FAM83B fusion "ATF7IP," "FAM83B," chr12~chr6 14518761 54804504 19 ++ 2.068885 18 4 14 18 50 TCGA-PC-A5DN-01A-12R-A27Q-07 ATF7IP~FAM83B fusion "ATF7IP," "FAM83B," chr12~chr6 14538334 54804504 15 ++ 1.804938 17 7 8 17 36 TCGA-PC-A5DN-01A-12R-A27Q-07 ATXN1~Nchr6~33519117 intergenic "ATXN1,AL137003.1,ATXN1,AL137003.1,ATXN1," "-," chr6~chr6 16761529 33519117 8 -- 1.320888 2 1 1 2 10 TCGA-PC-A5DN-01A-12R-A27Q-07 ATXN1~Nchr6~33522678 intergenic "ATXN1,AL137003.1,ATXN1,AL137003.1,ATXN1," "-," chr6~chr6 16761529 33522678 4 -- 0.562335 3 3 0 3 4 TCGA-PC-A5DN-01A-12R-A27Q-07 BEST3~C12orf28 fusion "BEST3," "AC025263.3,C12orf28," chr12~chr12 70065208 70249060 36 -+ 2.493176 22 18 4 22 92 TCGA-PC-A5DN-01A-12R-A27Q-07 C12orf48~Nchr12~115608394 intergenic "C12orf48," "-," chr12~chr12 102559661 115608394 6 ++ 1.56071 6 4 2 6 14 TCGA-PC-A5DN-01A-12R-A27Q-07 C12orf48~Nchr12~115608394 intergenic "C12orf48," "-," chr12~chr12 102576405 115608394 5 ++ 1.609438 5 3 2 5 38 TCGA-PC-A5DN-01A-12R-A27Q-07 C6orf52~DST fusion "C6orf52," "DST," chr6~chr6 10694727 56765419 4 -- 1.039721 4 2 2 4 8 TCGA-PC-A5DN-01A-12R-A27Q-07 CLIP1~FKBP5 fusion "CLIP1," "FKBP5," chr12~chr6 122907068 35688325 35 -- 2.153329 25 0 25 25 22 TCGA-PC-A5DN-01A-12R-A27Q-07 CLIP1~FKBP5 fusion "CLIP1," "FKBP5," chr12~chr6 122901874 35688325 7 -- 0.410116 7 1 6 7 48 TCGA-PC-A5DN-01A-12R-A27Q-07 CPM~Nchr6~48527881 intergenic "CPM," "-," chr12~chr6 69273939 48527881 14 +- 2.242973 13 6 7 13 28 TCGA-PC-A5DN-01A-12R-A27Q-07 CPSF6~C9orf3 fusion "CPSF6," "C9orf3," chr12~chr9 69656342 97848964 6 ++ 1.011404 6 1 5 6 20 TCGA-PC-A5DN-01A-12R-A27Q-07 CPSF6~CCNL2 fusion "CPSF6," "CCNL2," chr12~chr1 69656342 1326245 3 +- 0.636514 3 3 0 3 8 TCGA-PC-A5DN-01A-12R-A27Q-07 CPSF6~Nchr15~38650387 intergenic "CPSF6," "-," chr12~chr15 69656342 38650387 4 ++ 0.693147 4 0 4 4 2 TCGA-PC-A5DN-01A-12R-A27Q-07 CPSF6~PRIM2 fusion "CPSF6," "PRIM2," chr12~chr6 69656342 57372288 19 ++ 2.260234 13 4 9 13 106 TCGA-PC-A5DN-01A-12R-A27Q-07 CPSF6~RP11-745O10.4 fusion "CPSF6," "TMBIM4,RP11-745O10.4,TMBIM4," chr12~chr12 69656342 66547228 6 +- 1.56071 6 4 2 6 32 TCGA-PC-A5DN-01A-12R-A27Q-07 CPSF6~SSR1 fusion "CPSF6," "SSR1," chr12~chr6 69656342 7310262 2 +- 0.693147 2 1 1 2 2 TCGA-PC-A5DN-01A-12R-A27Q-07 CTD-2281E23.2~DLGAP2 fusion "CTD-2281E23.2," "DLGAP2," chr8~chr8 1208883 1449532 6 ++ 1.791759 4 1 3 4 10 TCGA-PC-A5DN-01A-12R-A27Q-07 FKBP5~Nchr12~77092802 intergenic "FKBP5," "-," chr6~chr12 35688105 77092802 6 -- 1.242453 2 1 1 2 18 TCGA-PC-A5DN-01A-12R-A27Q-07 FKBP5~Nchr12~77135038 intergenic "FKBP5," "-," chr6~chr12 35688105 77135038 3 -- 0.636514 3 0 3 3 2 TCGA-PC-A5DN-01A-12R-A27Q-07 GATC~PPP1R12A fusion "COX6A1,GATC," "PPP1R12A," chr12~chr12 120876032 80266718 41 +- 2.714534 40 30 10 40 216 TCGA-PC-A5DN-01A-12R-A27Q-07 GLIPR1L2~Nchr12~102752009 intergenic "GLIPR1L2," "-," chr12~chr12 75816769 102752009 13 +- 2.245035 5 1 4 5 22 TCGA-PC-A5DN-01A-12R-A27Q-07 GPLD1~Nchr12~13072030 intergenic "GPLD1," "-," chr6~chr12 24475349 13072030 15 -- 2.523211 13 4 9 13 82 TCGA-PC-A5DN-01A-12R-A27Q-07 GPR162~Nchr6~16775345 intergenic "GPR162,GPR162," "-," chr12~chr6 6934183 16775345 277 +- 3.212143 277 153 116 277 1034 TCGA-PC-A5DN-01A-12R-A27Q-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 85 -- 2.529983 85 85 0 85 72 TCGA-PC-A5DN-01A-12R-A27Q-07 HSP90B1~MDM2 fusion "HSP90B1," "MDM2," chr12~chr12 104341208 69229609 30 ++ 2.748145 28 15 13 28 36 TCGA-PC-A5DN-01A-12R-A27Q-07 HSP90B1~Nchr12~105189229 intergenic "HSP90B1," "-," chr12~chr12 104341208 105189229 3 +- 1.098612 3 1 2 3 74 TCGA-PC-A5DN-01A-12R-A27Q-07 HSP90B1~Nchr12~105189988 intergenic "HSP90B1," "-," chr12~chr12 104341436 105189988 8 +- 1.494175 8 4 4 8 116 TCGA-PC-A5DN-01A-12R-A27Q-07 HSP90B1~Nchr6~49538390 intergenic "HSP90B1," "-," chr12~chr6 104324282 49538390 3 -- 1.098612 2 0 2 2 6 TCGA-PC-A5DN-01A-12R-A27Q-07 KCNMB4~GLIPR1L2 fusion "KCNMB4," "GLIPR1L2," chr12~chr12 70760850 75816684 150 ++ 3.025658 142 125 17 142 438 TCGA-PC-A5DN-01A-12R-A27Q-07 KDM5A~Nchr6~45753443 intergenic "KDM5A," "-," chr12~chr6 420051 45753443 6 -+ 1.011404 2 1 1 2 12 TCGA-PC-A5DN-01A-12R-A27Q-07 KDM5A~Nchr6~45769143 intergenic "KDM5A," "-," chr12~chr6 420051 45769143 3 -+ 1.098612 2 0 2 2 60 TCGA-PC-A5DN-01A-12R-A27Q-07 LMBR1L~Nchr12~69559916 intergenic "LMBR1L," "-," chr12~chr12 49504267 69559916 51 -+ 2.765049 49 16 33 49 126 TCGA-PC-A5DN-01A-12R-A27Q-07 LMBR1L~Nchr12~69585235 intergenic "LMBR1L," "-," chr12~chr12 49504267 69585235 2 -+ 0.693147 2 2 0 2 46 TCGA-PC-A5DN-01A-12R-A27Q-07 LRP1~ETV6 fusion "LRP1," "ETV6," chr12~chr12 57539273 12037379 4 ++ 1.039721 4 2 2 4 16 TCGA-PC-A5DN-01A-12R-A27Q-07 LRP1~Nchr12~58681348 intergenic "LRP1," "-," chr12~chr12 57539273 58681348 4 ++ 1.386294 4 3 1 4 8 TCGA-PC-A5DN-01A-12R-A27Q-07 LRP1~Nchr12~58733475 intergenic "LRP1," "-," chr12~chr12 57539273 58733475 7 ++ 1.078992 5 2 3 5 12 TCGA-PC-A5DN-01A-12R-A27Q-07 MAPKAPK5~Nchr6~36133054 intergenic "MAPKAPK5," "-," chr12~chr6 112327346 36133054 40 ++ 2.727763 41 26 13 41 190 TCGA-PC-A5DN-01A-12R-A27Q-07 MAPKAPK5~UNC119B fusion "MAPKAPK5," "UNC119B," chr12~chr12 112326422 121157723 6 ++ 1.329661 6 3 3 6 14 TCGA-PC-A5DN-01A-12R-A27Q-07 MDM2~Nchr12~76514094 intergenic "MDM2," "-," chr12~chr12 69230529 76514094 21 +- 2.136507 21 12 9 21 34 TCGA-PC-A5DN-01A-12R-A27Q-07 MFSD2A~Nchr1~51717016 intergenic "MFSD2A," "-," chr1~chr1 40428381 51717016 4 -- 0.562335 1 1 0 1 8 TCGA-PC-A5DN-01A-12R-A27Q-07 MLL2~ETV6 fusion "MLL2," "ETV6," chr12~chr12 49440249 12012759 4 -+ 1.386294 4 4 0 4 8 TCGA-PC-A5DN-01A-12R-A27Q-07 MLL2~ETV6 fusion "MLL2," "ETV6," chr12~chr12 49440392 12012915 3 -+ 0.636514 3 3 0 3 2 TCGA-PC-A5DN-01A-12R-A27Q-07 MMP19~Nchr12~79902501 intergenic "MMP19,MMP19," "-," chr12~chr12 56230714 79902501 3 ++ 1.098612 2 1 1 2 16 TCGA-PC-A5DN-01A-12R-A27Q-07 NAV3~AC023055.2 fusion "NAV3," "AC023055.2," chr12~chr12 78452895 56223744 2 ++ 0.693147 2 2 0 2 8 TCGA-PC-A5DN-01A-12R-A27Q-07 NUAK1~C12orf65 fusion "NUAK1," "C12orf65," chr12~chr12 106477642 123738194 14 -+ 2.341994 13 4 9 13 54 TCGA-PC-A5DN-01A-12R-A27Q-07 NUP37~Nchr12~94341275 intergenic "NUP37," "-," chr12~chr12 102492884 94341275 7 -+ 1.549826 7 1 6 7 12 TCGA-PC-A5DN-01A-12R-A27Q-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 75 -+ 2.360259 40 0 40 40 28 TCGA-PC-A5DN-01A-12R-A27Q-07 Nchr12~57853258~PPP1R12A intergenic "-," "PPP1R12A," chr12~chr12 57853258 80192364 2 -- 0.693147 2 1 1 2 6 TCGA-PC-A5DN-01A-12R-A27Q-07 Nchr12~70018730~RNF10 intergenic "-," "RNF10," chr12~chr12 70018730 121000748 17 ++ 2.068513 14 7 7 14 22 TCGA-PC-A5DN-01A-12R-A27Q-07 Nchr12~70019427~RNF10 intergenic "-," "RNF10," chr12~chr12 70019427 121000748 11 ++ 1.84622 10 8 2 10 34 TCGA-PC-A5DN-01A-12R-A27Q-07 Nchr12~70023890~RNF10 intergenic "-," "RNF10," chr12~chr12 70023890 121000748 21 ++ 2.598605 18 9 9 18 50 TCGA-PC-A5DN-01A-12R-A27Q-07 Nchr12~70759006~Nchr12~12111241 intergenic "-," "-," chr12~chr12 70759006 12111241 4 -+ 0.562335 3 1 2 3 10 TCGA-PC-A5DN-01A-12R-A27Q-07 Nchr12~79903479~Nchr12~93004675 intergenic "-," "-," chr12~chr12 79903479 93004675 18 +- 2.245172 16 7 9 16 86 TCGA-PC-A5DN-01A-12R-A27Q-07 Nchr12~93004271~Nchr12~119999750 intergenic "-," "-," chr12~chr12 93004271 119999750 4 -+ 1.386294 4 3 1 4 36 TCGA-PC-A5DN-01A-12R-A27Q-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 8 ++ 1.494175 8 5 3 8 12 TCGA-PC-A5DN-01A-12R-A27Q-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 4 ++ 1.386294 4 0 4 4 10 TCGA-PC-A5DN-01A-12R-A27Q-07 Nchr16~85404884~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85404884 85667520 6 ++ 1.242453 6 1 5 6 20 TCGA-PC-A5DN-01A-12R-A27Q-07 Nchr16~87252211~Nchr16~87252453 intergenic "-," "-," chr16~chr16 87252211 87252453 2 -- 0.693147 2 0 2 2 4 TCGA-PC-A5DN-01A-12R-A27Q-07 Nchr1~147775634~RP11-495P10.6 intergenic "-," "RP11-495P10.6," chr1~chr1 147775634 147744165 5 +- 0.950271 5 0 5 5 6 TCGA-PC-A5DN-01A-12R-A27Q-07 Nchr1~147775662~RP11-495P10.6 intergenic "-," "RP11-495P10.6," chr1~chr1 147775662 147744165 17 +- 2.099293 17 2 15 17 12 TCGA-PC-A5DN-01A-12R-A27Q-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 6 ++ 1.011404 6 6 0 6 8 TCGA-PC-A5DN-01A-12R-A27Q-07 Nchr6~16760288~SCNN1A intergenic "-," "SCNN1A," chr6~chr12 16760288 6477781 48 -+ 2.659777 46 31 15 46 68 TCGA-PC-A5DN-01A-12R-A27Q-07 Nchr6~21753805~ACADS intergenic "-," "ACADS," chr6~chr12 21753805 121174789 20 -+ 2.573689 20 9 10 20 58 TCGA-PC-A5DN-01A-12R-A27Q-07 Nchr6~3632263~MLIP intergenic "-," "MLIP," chr6~chr6 3632263 54054771 2 -- 0.693147 2 0 2 2 8 TCGA-PC-A5DN-01A-12R-A27Q-07 Nchr6~40101172~DST intergenic "-," "DST," chr6~chr6 40101172 56358439 3 -+ 0.636514 3 2 1 3 8 TCGA-PC-A5DN-01A-12R-A27Q-07 Nchr6~45769301~Nchr6~3634293 intergenic "-," "-," chr6~chr6 45769301 3634293 12 +- 2.057898 10 4 5 10 24 TCGA-PC-A5DN-01A-12R-A27Q-07 Nchr7~122851497~Nchr7~123096679 intergenic "-," "-," chr7~chr7 122851497 123096679 3 ++ 1.098612 3 0 3 3 12 TCGA-PC-A5DN-01A-12R-A27Q-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 31 ++ 2.078344 7 2 5 7 4 TCGA-PC-A5DN-01A-12R-A27Q-07 OPCML~Nchr11~133167083 intergenic "OPCML," "-," chr11~chr11 133402159 133167083 2 -- 0.693147 2 2 0 2 4 TCGA-PC-A5DN-01A-12R-A27Q-07 OSBPL8~Nchr12~97953934 intergenic "OSBPL8," "-," chr12~chr12 76763417 97953934 10 -- 1.695743 10 7 3 10 16 TCGA-PC-A5DN-01A-12R-A27Q-07 OSBPL8~Nchr6~49512312 intergenic "OSBPL8," "-," chr12~chr6 76752486 49512312 23 -- 2.318201 19 16 3 19 66 TCGA-PC-A5DN-01A-12R-A27Q-07 OSBPL8~STAT6 fusion "OSBPL8," "STAT6," chr12~chr12 76749538 57494682 2 -- 0.693147 2 1 1 2 4 TCGA-PC-A5DN-01A-12R-A27Q-07 POC1B~Nchr6~56755005 intergenic "POC1B," "-," chr12~chr6 89890924 56755005 8 -+ 1.213008 8 6 2 8 96 TCGA-PC-A5DN-01A-12R-A27Q-07 PRIM2~Nchr12~70099784 intergenic "PRIM2," "-," chr6~chr12 57467206 70099784 5 +- 1.332179 5 2 3 5 18 TCGA-PC-A5DN-01A-12R-A27Q-07 PRIM2~Nchr12~70119169 intergenic "PRIM2," "-," chr6~chr12 57467206 70119169 3 +- 1.098612 3 2 1 3 16 TCGA-PC-A5DN-01A-12R-A27Q-07 PTGES3~Nchr12~70547374 intergenic "PTGES3," "-," chr12~chr12 57060494 70547374 22 -+ 2.005068 20 9 10 20 78 TCGA-PC-A5DN-01A-12R-A27Q-07 PTGES3~Nchr12~70549257 intergenic "PTGES3," "-," chr12~chr12 57064059 70549257 388 -+ 2.892271 341 142 185 341 1258 TCGA-PC-A5DN-01A-12R-A27Q-07 RP11-386G11.10~Nchr12~92991836 intergenic "RP11-386G11.10," "-," chr12~chr12 49525608 92991836 9 +- 1.889159 9 4 5 9 12 TCGA-PC-A5DN-01A-12R-A27Q-07 RP11-386G11.10~Nchr12~93023095 intergenic "TUBA1B,RP11-386G11.10,TUBA1B,RP11-386G11.10," "-," chr12~chr12 49525164 93023095 5 ++ 0.673012 5 5 0 5 2 TCGA-PC-A5DN-01A-12R-A27Q-07 RP11-762I7.5~Nchr12~70474210 intergenic "DNAJC14,RP11-762I7.5," "-," chr12~chr12 56215785 70474210 3 -- 0.636514 3 1 2 3 12 TCGA-PC-A5DN-01A-12R-A27Q-07 SCUBE3~Nchr6~54851935 intergenic "SCUBE3," "-," chr6~chr6 35201078 54851935 15 ++ 2.211069 14 6 8 14 62 TCGA-PC-A5DN-01A-12R-A27Q-07 TMEM63B~HCG23 fusion "TMEM63B," "HCG23," chr6~chr6 44108835 32358469 9 ++ 1.676988 9 0 9 9 12 TCGA-PC-A5DN-01A-12R-A27Q-07 TMEM63B~Nchr6~32354758 intergenic "TMEM63B," "-," chr6~chr6 44108835 32354758 7 ++ 1.351784 7 7 0 7 32 TCGA-PC-A5DN-01A-12R-A27Q-07 TMEM63B~Nchr6~32357991 intergenic "TMEM63B," "-," chr6~chr6 44108835 32357991 45 ++ 2.599592 44 16 28 44 82 TCGA-PC-A5DN-01A-12R-A27Q-07 VPS29~HSPB8 fusion "VPS29," "HSPB8," chr12~chr12 110933817 119655870 3 -+ 0.636514 3 3 0 3 594 TCGA-PC-A5DN-01A-12R-A27Q-07 VPS29~HSPB8 fusion "VPS29," "HSPB8," chr12~chr12 110933817 119658519 405 -+ 3.194917 489 146 234 489 844 TCGA-PC-A5DN-01A-12R-A27Q-07 VPS29~Nchr12~119662506 intergenic "VPS29," "-," chr12~chr12 110933817 119662506 10 -+ 1.748067 9 2 7 9 24 TCGA-PC-A5DN-01A-12R-A27Q-07 YEATS4~PTPRR fusion "YEATS4," "PTPRR," chr12~chr12 69764755 71056385 18 +- 2.245172 15 11 4 15 24 TCGA-PC-A5DN-01A-12R-A27Q-07 ZDHHC17~RP11-542B15.1 fusion "ZDHHC17," "RP11-542B15.1," chr12~chr12 77158109 67959294 6 ++ 1.329661 6 4 2 6 34 TCGA-PC-A5DL-01A-11R-A26T-07 A2M~PZP fusion "A2M," "PZP," chr12~chr12 9227312 9307397 3 -- 0.636514 3 3 0 3 46 TCGA-PC-A5DL-01A-11R-A26T-07 CTD-2337A12.1~CAST fusion "CTD-2337A12.1," "CAST," chr5~chr5 95715356 96011243 9 ++ 1.522955 5 0 5 5 20 TCGA-PC-A5DL-01A-11R-A26T-07 FLNC~Nchr7~128552847 intergenic "FLNC," "-," chr7~chr7 128498612 128552847 3 -- 1.098612 2 2 0 2 4 TCGA-PC-A5DL-01A-11R-A26T-07 GAPDH~NchrX~46299827 intergenic "GAPDH," "-," chr12~chrX 6646369 46299827 9 -- 1.522955 2 2 0 2 202 TCGA-PC-A5DL-01A-11R-A26T-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 81 -- 2.440799 81 81 0 81 58 TCGA-PC-A5DL-01A-11R-A26T-07 HN1~Nchr2~174296244 intergenic "HN1," "-," chr17~chr2 73143651 174296244 15 -- 1.17106 7 7 0 7 2 TCGA-PC-A5DL-01A-11R-A26T-07 MYO1D~ACCN1 fusion "AC084809.2,MYO1D," "ACCN1," chr17~chr17 31203796 31355410 2 -- 0.693147 1 0 1 1 12 TCGA-PC-A5DL-01A-11R-A26T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 131 -+ 2.422257 76 0 73 76 84 TCGA-PC-A5DL-01A-11R-A26T-07 Nchr13~108070666~FAM155A intergenic "-," "FAM155A," chr13~chr13 108070666 107863103 2 -- 0.693147 2 0 2 2 40 TCGA-PC-A5DL-01A-11R-A26T-07 Nchr13~108074020~FAM155A intergenic "-," "FAM155A," chr13~chr13 108074020 107863103 5 -- 1.332179 5 5 0 5 20 TCGA-PC-A5DL-01A-11R-A26T-07 Nchr14~45066112~Nchr14~44862941 intergenic "-," "-," chr14~chr14 45066112 44862941 6 -- 1.242453 2 2 0 2 14 TCGA-PC-A5DL-01A-11R-A26T-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 5 ++ 1.332179 4 2 2 4 6 TCGA-PC-A5DL-01A-11R-A26T-07 Nchr17~43661938~Nchr17~44352784 intergenic "-," "-," chr17~chr17 43661938 44352784 3 -- 0.636514 3 0 3 3 6 TCGA-PC-A5DL-01A-11R-A26T-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 10 -+ 2.271869 10 6 3 10 202 TCGA-PC-A5DL-01A-11R-A26T-07 Nchr20~19030024~SLC24A3 intergenic "-," "SLC24A3," chr20~chr20 19030024 19261603 10 ++ 1.834372 8 3 5 8 10 TCGA-PC-A5DL-01A-11R-A26T-07 Nchr20~29653686~Nchr9~68422207 intergenic "-," "-," chr20~chr9 29653686 68422207 5 +- 1.332179 4 0 4 4 6 TCGA-PC-A5DL-01A-11R-A26T-07 Nchr2~139258325~Nchr2~139057107 intergenic "-," "-," chr2~chr2 139258325 139057107 4 -- 0.693147 4 2 2 4 6 TCGA-PC-A5DL-01A-11R-A26T-07 Nchr6~8438264~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8438264 8784424 2 ++ 0.693147 2 1 1 2 8 TCGA-PC-A5DL-01A-11R-A26T-07 Nchr7~27498099~Nchr7~27498194 intergenic "-," "-," chr7~chr7 27498099 27498194 2 -- 0.693147 2 0 2 2 2 TCGA-PC-A5DL-01A-11R-A26T-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 141 ++ 2.782734 15 0 15 15 4 TCGA-PC-A5DL-01A-11R-A26T-07 NchrX~110763610~NchrX~110763766 intergenic "-," "-," chrX~chrX 110763610 110763766 2 -- 0.693147 2 2 0 2 58 TCGA-PC-A5DL-01A-11R-A26T-07 NchrX~110764181~NchrX~110764281 intergenic "-," "-," chrX~chrX 110764181 110764281 4 -- 0.562335 4 2 2 4 4 TCGA-PC-A5DL-01A-11R-A26T-07 NchrX~110764196~NchrX~110764308 intergenic "-," "-," chrX~chrX 110764196 110764308 2 -- 0.693147 2 0 2 2 6 TCGA-PC-A5DL-01A-11R-A26T-07 NchrX~110764207~NchrX~110764427 intergenic "-," "-," chrX~chrX 110764207 110764427 3 -- 0.636514 3 0 3 3 34 TCGA-PC-A5DL-01A-11R-A26T-07 RP11-123O10.4~GRIP1 fusion "RP11-123O10.4," "GRIP1," chr12~chr12 67462830 66990707 4 -- 0.562335 1 0 1 1 10 TCGA-PC-A5DL-01A-11R-A26T-07 RP11-21C17.1~RP11-600K15.1 fusion "RP11-21C17.1," "RP11-600K15.1," chr8~chr8 70090350 69836730 4 -- 1.039721 4 4 0 4 8 TCGA-PC-A5DL-01A-11R-A26T-07 RP11-296O14.3~TNFSF4 fusion "RP11-296O14.3," "TNFSF4," chr1~chr1 173393013 173157708 3 -- 0.636514 3 1 2 3 4 TCGA-PC-A5DL-01A-11R-A26T-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 7 ++ 1.277034 5 2 3 5 12 TCGA-PC-A5DL-01A-11R-A26T-07 SHC1~Nchr17~42306882 intergenic "SHC1," "-," chr1~chr17 154938544 42306882 3 ++ 1.098612 3 3 0 3 2 TCGA-PC-A5DM-01A-11R-A27Q-07 CADM2~Nchr3~87517726 intergenic "CADM2," "-," chr3~chr3 85515911 87517726 3 -- 1.098612 2 1 1 2 10 TCGA-PC-A5DM-01A-11R-A27Q-07 CDH4~Nchr9~71911633 intergenic "CDH4," "-," chr20~chr9 60077001 71911633 14 ++ 2.044931 7 0 7 7 44 TCGA-PC-A5DM-01A-11R-A27Q-07 CHCHD6~Nchr3~99898230 intergenic "CHCHD6," "-," chr3~chr3 126452065 99898230 2 +- 0.693147 2 0 2 2 4 TCGA-PC-A5DM-01A-11R-A27Q-07 CTNNAL1~Nchr14~27289996 intergenic "CTNNAL1," "-," chr9~chr14 111753006 27289996 5 -- 1.609438 4 4 0 4 34 TCGA-PC-A5DM-01A-11R-A27Q-07 CTNNAL1~Nchr14~27291916 intergenic "CTNNAL1," "-," chr9~chr14 111753006 27291916 2 -- 0.693147 2 1 1 2 30 TCGA-PC-A5DM-01A-11R-A27Q-07 CTNNAL1~Nchr14~27296343 intergenic "CTNNAL1," "-," chr9~chr14 111753006 27296343 29 -- 2.488794 28 6 22 28 76 TCGA-PC-A5DM-01A-11R-A27Q-07 CTNNAL1~Nchr14~27296790 intergenic "CTNNAL1," "-," chr9~chr14 111753006 27296790 9 -- 1.735126 9 6 3 9 72 TCGA-PC-A5DM-01A-11R-A27Q-07 DAB1~Nchr1~58436537 intergenic "DAB1," "-," chr1~chr1 58715912 58436537 5 -- 1.332179 3 0 3 3 4 TCGA-PC-A5DM-01A-11R-A27Q-07 FSTL1~CPOX fusion "FSTL1," "CPOX," chr3~chr3 120128379 98304503 10 -- 1.886697 10 7 3 10 44 TCGA-PC-A5DM-01A-11R-A27Q-07 GREB1L~Nchr15~63607125 intergenic "GREB1L," "-," chr18~chr15 19034524 63607125 7 +- 1.277034 6 6 0 6 12 TCGA-PC-A5DM-01A-11R-A27Q-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 63 -- 2.207369 63 63 0 63 16 TCGA-PC-A5DM-01A-11R-A27Q-07 INTS4~Nchr4~67601529 intergenic "INTS4," "-," chr11~chr4 77690042 67601529 10 -- 2.025326 8 4 4 8 40 TCGA-PC-A5DM-01A-11R-A27Q-07 MARK3~Nchr14~103754060 intergenic "MARK3," "-," chr14~chr14 103941547 103754060 3 ++ 1.098612 3 2 1 3 8 TCGA-PC-A5DM-01A-11R-A27Q-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 43 -+ 2.47463 13 0 13 13 20 TCGA-PC-A5DM-01A-11R-A27Q-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 2 ++ 0.693147 1 1 0 1 8 TCGA-PC-A5DM-01A-11R-A27Q-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 3 ++ 1.098612 3 1 2 3 20 TCGA-PC-A5DM-01A-11R-A27Q-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 10 -+ 1.609438 9 5 4 9 148 TCGA-PC-A5DM-01A-11R-A27Q-07 Nchr1~171639784~Nchr1~171639676 intergenic "-," "-," chr1~chr1 171639784 171639676 2 ++ 0.693147 1 0 1 1 4 TCGA-PC-A5DM-01A-11R-A27Q-07 Nchr6~136068059~Nchr6~147763170 intergenic "-," "-," chr6~chr6 136068059 147763170 2 -- 0.693147 1 0 1 1 12 TCGA-PC-A5DM-01A-11R-A27Q-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 5 ++ 1.332179 4 4 0 4 4 TCGA-PC-A5DM-01A-11R-A27Q-07 Nchr6~98547146~Nchr6~104935463 intergenic "-," "-," chr6~chr6 98547146 104935463 2 +- 0.693147 2 0 2 2 2 TCGA-PC-A5DM-01A-11R-A27Q-07 RALBP1~RP11-319E12.1 fusion "RALBP1," "RP11-319E12.1," chr18~chr4 9525849 58328540 21 ++ 2.28142 21 10 11 21 52 TCGA-PC-A5DM-01A-11R-A27Q-07 RALBP1~RP11-319E12.1 fusion "RALBP1," "RP11-319E12.1," chr18~chr4 9525849 58330391 4 ++ 1.039721 4 1 3 4 34 TCGA-PC-A5DM-01A-11R-A27Q-07 RNF213~AC016182.1 fusion "RNF213," "AC016182.1," chr17~chr17 78237577 76490066 4 ++ 0.562335 4 3 1 4 38 TCGA-PC-A5DM-01A-11R-A27Q-07 RNF213~AC016182.1 fusion "RNF213," "AC016182.1," chr17~chr17 78237577 76490096 7 ++ 1.277034 7 1 6 7 36 TCGA-PC-A5DM-01A-11R-A27Q-07 RP11-288D9.1~PTPRQ fusion "RP11-288D9.1," "PTPRQ," chr12~chr12 80849275 80862489 5 -+ 1.609438 5 3 2 5 4 TCGA-PC-A5DM-01A-11R-A27Q-07 SACS~MYO16 fusion "SACS," "MYO16," chr13~chr13 23985359 109831890 3 -+ 1.098612 3 1 2 3 6 TCGA-PC-A5DM-01A-11R-A27Q-07 SCAF8~Nchr6~95612658 intergenic "SCAF8," "-," chr6~chr6 155099179 95612658 23 ++ 2.38946 18 12 6 18 62 TCGA-PC-A5DM-01A-11R-A27Q-07 SRGAP2P2~Nchr17~67789680 intergenic "SRGAP2P2," "-," chr1~chr17 144014093 67789680 9 +- 1.609438 10 7 2 10 46 TCGA-PC-A5DM-01A-11R-A27Q-07 SS18L1~Nchr9~68357578 intergenic "SS18L1," "-," chr20~chr9 60749700 68357578 4 ++ 1.039721 4 2 2 4 4 TCGA-PC-A5DM-01A-11R-A27Q-07 STXBP5~TNFRSF19 fusion "STXBP5," "TNFRSF19," chr6~chr13 147660520 24247511 3 ++ 1.098612 3 3 0 3 26 TCGA-PC-A5DM-01A-11R-A27Q-07 TFDP2~Nchr3~107853991 intergenic "TFDP2," "-," chr3~chr3 141697362 107853991 3 -+ 1.098612 3 2 1 3 18 TCGA-PC-A5DM-01A-11R-A27Q-07 TRIO~CDH4 fusion "TRIO," "CDH4," chr5~chr20 14359640 60076878 14 ++ 1.970181 13 5 8 13 36 TCGA-PC-A5DM-01A-11R-A27Q-07 TRIO~Nchr9~71911633 intergenic "TRIO," "-," chr5~chr9 14359640 71911633 4 ++ 0.562335 4 4 0 4 10 TCGA-PC-A5DK-01A-11R-A27Q-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 173 -- 2.421163 173 172 1 173 100 TCGA-PC-A5DK-01A-11R-A27Q-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238905 31324034 3 -- 1.098612 1 1 0 1 2 TCGA-PC-A5DK-01A-11R-A27Q-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32486900 32548633 2 -- 0.693147 1 1 0 1 46 TCGA-PC-A5DK-01A-11R-A27Q-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32487941 32548633 25 -- 2.001262 4 0 4 4 10 TCGA-PC-A5DK-01A-11R-A27Q-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 25 -+ 1.94581 9 0 9 9 8 TCGA-PC-A5DK-01A-11R-A27Q-07 Nchr12~24366277~SOX5 intergenic "-," "SOX5," chr12~chr12 24366277 24048958 4 -- 1.039721 2 2 0 2 2 TCGA-PC-A5DK-01A-11R-A27Q-07 Nchr12~95267416~TMCC3 intergenic "-," "TMCC3," chr12~chr12 95267416 94976314 3 -- 0.636514 3 3 0 3 4 TCGA-PC-A5DK-01A-11R-A27Q-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 2 ++ 0.693147 2 0 2 2 2 TCGA-PC-A5DK-01A-11R-A27Q-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 40 ++ 2.245674 1 0 1 1 6 TCGA-PC-A5DK-01A-11R-A27Q-07 SLC35F3~KLHL1 fusion "SLC35F3," "KLHL1," chr1~chr13 234367487 70371094 3 +- 1.098612 3 1 2 3 22 TCGA-MO-A47R-01A-11R-A24X-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 23 -- 2.223413 23 23 0 23 28 TCGA-MO-A47R-01A-11R-A24X-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 69 -- 2.136364 38 6 32 38 4 TCGA-MO-A47R-01A-11R-A24X-07 IGF2~Nchr12~127650986 intergenic "IGF2,IGF2," "-," chr11~chr12 2152933 127650986 7 +- 1.94591 2 0 2 2 6 TCGA-MO-A47R-01A-11R-A24X-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 14 -+ 1.908535 7 0 7 7 24 TCGA-MO-A47R-01A-11R-A24X-07 Nchr15~95399585~GLTSCR2 intergenic "-," "GLTSCR2," chr15~chr19 95399585 48257998 2 +- 0.693147 1 1 0 1 8 TCGA-MO-A47R-01A-11R-A24X-07 Nchr18~37331293~Nchr18~37115579 intergenic "-," "-," chr18~chr18 37331293 37115579 9 -- 2.197225 6 5 1 6 4 TCGA-MO-A47R-01A-11R-A24X-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 7 -- 1.747868 6 0 6 6 16 TCGA-MO-A47P-01A-11R-A24X-07 CTC-535M15.2~Nchr5~165510753 intergenic "CTC-535M15.2," "-," chr5~chr5 165205079 165510753 10 ++ 2.025326 1 0 1 1 4 TCGA-MO-A47P-01A-11R-A24X-07 GAPDH~NchrX~46299827 intergenic "GAPDH," "-," chr12~chrX 6646369 46299827 7 -- 1.549826 2 2 0 2 156 TCGA-MO-A47P-01A-11R-A24X-07 HN1~Nchr2~174296244 intergenic "HN1," "-," chr17~chr2 73143651 174296244 44 -- 1.39888 20 20 0 20 2 TCGA-MO-A47P-01A-11R-A24X-07 Nchr11~42912707~Nchr11~42462263 intergenic "-," "-," chr11~chr11 42912707 42462263 5 -- 0.673012 3 0 3 3 6 TCGA-MO-A47P-01A-11R-A24X-07 Nchr11~65190452~Nchr11~65190687 intergenic "-," "-," chr11~chr11 65190452 65190687 2 -- 0.693147 2 0 2 2 20 TCGA-MO-A47P-01A-11R-A24X-07 Nchr11~65190712~Nchr11~65190684 intergenic "-," "-," chr11~chr11 65190712 65190684 5 ++ 1.05492 5 5 0 5 32 TCGA-MO-A47P-01A-11R-A24X-07 Nchr11~65191447~Nchr11~65191545 intergenic "-," "-," chr11~chr11 65191447 65191545 2 -- 0.693147 1 0 1 1 4 TCGA-MO-A47P-01A-11R-A24X-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 273 -+ 2.577059 131 0 130 131 110 TCGA-MO-A47P-01A-11R-A24X-07 Nchr15~47476615~SEMA6D intergenic "-," "SEMA6D," chr15~chr15 47476615 47704590 7 ++ 1.549826 3 3 0 3 4 TCGA-MO-A47P-01A-11R-A24X-07 Nchr15~55155259~UNC13C intergenic "-," "UNC13C," chr15~chr15 55155259 54908457 5 -- 1.332179 4 2 2 4 6 TCGA-MO-A47P-01A-11R-A24X-07 Nchr15~55155511~UNC13C intergenic "-," "UNC13C," chr15~chr15 55155511 54908457 4 -- 1.039721 2 0 2 2 12 TCGA-MO-A47P-01A-11R-A24X-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 2 ++ 0.693147 2 1 1 2 16 TCGA-MO-A47P-01A-11R-A24X-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 6 ++ 1.56071 5 4 1 5 8 TCGA-MO-A47P-01A-11R-A24X-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 18 -+ 2.06207 17 7 10 17 216 TCGA-MO-A47P-01A-11R-A24X-07 Nchr20~29653686~Nchr9~68422207 intergenic "-," "-," chr20~chr9 29653686 68422207 4 +- 1.386294 4 3 1 4 8 TCGA-MO-A47P-01A-11R-A24X-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 4 ++ 1.386294 2 2 0 2 70 TCGA-MO-A47P-01A-11R-A24X-07 Nchr2~174398067~Nchr2~174675806 intergenic "-," "-," chr2~chr2 174398067 174675806 9 ++ 1.676988 9 4 5 9 2 TCGA-MO-A47P-01A-11R-A24X-07 Nchr2~185090908~Nchr2~185298042 intergenic "-," "-," chr2~chr2 185090908 185298042 3 ++ 1.098612 3 1 2 3 12 TCGA-MO-A47P-01A-11R-A24X-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 22 ++ 1.822436 19 19 0 19 2 TCGA-MO-A47P-01A-11R-A24X-07 Nchr6~77484792~Nchr6~77698014 intergenic "-," "-," chr6~chr6 77484792 77698014 18 ++ 2.293119 18 4 14 18 70 TCGA-MO-A47P-01A-11R-A24X-07 Nchr6~77484983~Nchr6~77698014 intergenic "-," "-," chr6~chr6 77484983 77698014 13 ++ 1.626021 13 4 9 13 138 TCGA-MO-A47P-01A-11R-A24X-07 Nchr6~77484983~Nchr6~77782931 intergenic "-," "-," chr6~chr6 77484983 77782931 23 ++ 1.408564 20 1 19 20 58 TCGA-MO-A47P-01A-11R-A24X-07 Nchr7~140912504~Nchr7~141137408 intergenic "-," "-," chr7~chr7 140912504 141137408 12 ++ 1.979205 8 0 8 8 2 TCGA-MO-A47P-01A-11R-A24X-07 RNF144A~Nchr2~7417235 intergenic "RNF144A," "-," chr2~chr2 7170346 7417235 6 ++ 1.242453 6 5 1 6 2 TCGA-MO-A47P-01A-11R-A24X-07 RP1-34H18.1~NAV3 fusion "RP1-34H18.1," "NAV3," chr12~chr12 77966046 78334099 3 ++ 1.098612 2 2 0 2 4 TCGA-MO-A47P-01A-11R-A24X-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 6 ++ 1.011404 6 5 1 6 38 TCGA-MO-A47P-01A-11R-A24X-07 RP5-1011O1.2~Nchr1~192208920 intergenic "RP5-1011O1.2," "-," chr1~chr1 192536277 192208920 6 -- 1.56071 4 1 3 4 8 TCGA-MO-A47P-01A-11R-A24X-07 ZNF711~NchrX~84398024 intergenic "ZNF711," "-," chrX~chrX 84502657 84398024 7 +- 1.475076 7 6 1 7 10 TCGA-K1-A42X-01A-11R-A24X-07 AAGAB~SMAD3 fusion "AAGAB," "SMAD3," chr15~chr15 67500900 67457233 5 -+ 1.609438 5 3 2 5 36 TCGA-K1-A42X-01A-11R-A24X-07 ATRN~UQCRB fusion "ATRN," "UQCRB," chr20~chr8 3541552 97245455 31 +- 2.486734 26 10 16 26 106 TCGA-K1-A42X-01A-11R-A24X-07 C14orf135~Nchr4~44509387 intergenic "C14orf135," "-," chr14~chr4 60575495 44509387 3 -+ 1.098612 2 2 0 2 2 TCGA-K1-A42X-01A-11R-A24X-07 DAB1~Nchr1~58436537 intergenic "DAB1," "-," chr1~chr1 58715912 58436537 6 -- 1.329661 3 0 3 3 4 TCGA-K1-A42X-01A-11R-A24X-07 HHIPL1~CCNK fusion "HHIPL1," "CCNK," chr14~chr14 100111799 99973413 4 ++ 1.039721 4 3 1 4 8 TCGA-K1-A42X-01A-11R-A24X-07 HHIPL1~CCNK fusion "HHIPL1," "CCNK," chr14~chr14 100112192 99973413 9 ++ 2.043192 7 3 4 7 36 TCGA-K1-A42X-01A-11R-A24X-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 21 -- 2.09541 21 21 0 21 8 TCGA-K1-A42X-01A-11R-A24X-07 KLHL13~NchrX~119628873 intergenic "KLHL13," "-," chrX~chrX 117207205 119628873 8 -- 1.320888 8 1 7 8 46 TCGA-K1-A42X-01A-11R-A24X-07 LATS2~MYLK fusion "LATS2," "MYLK," chr13~chr3 21634333 123386034 29 -- 2.371758 29 10 19 29 52 TCGA-K1-A42X-01A-11R-A24X-07 LATS2~MYLK fusion "LATS2," "MYLK," chr13~chr3 21635485 123386034 109 -- 2.598468 100 22 78 100 328 TCGA-K1-A42X-01A-11R-A24X-07 LATS2~MYLK fusion "LATS2," "MYLK," chr13~chr3 21634269 123386034 2 -- 0.693147 2 0 2 2 46 TCGA-K1-A42X-01A-11R-A24X-07 MYLK~Nchr13~21658894 intergenic "MYLK," "-," chr3~chr13 123375973 21658894 13 -- 2.245035 13 3 10 13 52 TCGA-K1-A42X-01A-11R-A24X-07 MYLK~Nchr13~21665819 intergenic "MYLK," "-," chr3~chr13 123375973 21665819 46 -- 2.744583 49 32 13 49 138 TCGA-K1-A42X-01A-11R-A24X-07 MYLK~Nchr13~21677369 intergenic "MYLK," "-," chr3~chr13 123375973 21677369 6 -- 1.329661 6 5 1 6 30 TCGA-K1-A42X-01A-11R-A24X-07 MYLK~Nchr13~21689034 intergenic "MYLK," "-," chr3~chr13 123375973 21689034 19 -- 2.086769 19 6 13 19 60 TCGA-K1-A42X-01A-11R-A24X-07 MYLK~Nchr13~21689049 intergenic "MYLK," "-," chr3~chr13 123375973 21689049 4 -- 0.693147 2 0 2 2 60 TCGA-K1-A42X-01A-11R-A24X-07 Nchr11~65190797~Nchr11~65190900 intergenic "-," "-," chr11~chr11 65190797 65190900 8 -- 1.906155 8 0 8 8 2 TCGA-K1-A42X-01A-11R-A24X-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 38 -+ 2.614786 18 0 15 18 36 TCGA-K1-A42X-01A-11R-A24X-07 Nchr1~148000671~SEC22B intergenic "-," "SEC22B," chr1~chr1 148000671 145109524 6 -+ 1.329661 6 5 1 6 4 TCGA-K1-A42X-01A-11R-A24X-07 Nchr1~173431463~TNFSF4 intergenic "-," "TNFSF4," chr1~chr1 173431463 173157708 2 -- 0.693147 2 1 1 2 30 TCGA-K1-A42X-01A-11R-A24X-07 Nchr22~41951963~POLR3H intergenic "-," "POLR3H," chr22~chr22 41951963 41940125 23 +- 2.257927 15 13 2 15 14 TCGA-K1-A42X-01A-11R-A24X-07 Nchr2~139258325~Nchr2~139057107 intergenic "-," "-," chr2~chr2 139258325 139057107 3 -- 0.636514 1 1 0 1 10 TCGA-K1-A42X-01A-11R-A24X-07 Nchr3~100887492~ABI3BP intergenic "-," "ABI3BP," chr3~chr3 100887492 100645325 3 -- 1.098612 3 2 1 3 4 TCGA-K1-A42X-01A-11R-A24X-07 Nchr5~113441478~Nchr5~113696642 intergenic "-," "-," chr5~chr5 113441478 113696642 8 ++ 2.043192 9 3 5 9 98 TCGA-K1-A42X-01A-11R-A24X-07 Nchr6~144522018~TPT1 intergenic "-," "TPT1," chr6~chr13 144522018 45914865 3 ++ 0.636514 3 3 0 3 54 TCGA-K1-A42X-01A-11R-A24X-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 15 ++ 2.083766 12 12 0 12 10 TCGA-K1-A42X-01A-11R-A24X-07 Nchr7~10124903~AC060834.3 intergenic "-," "AC060834.3," chr7~chr7 10124903 9799692 9 -- 1.889159 8 5 3 8 20 TCGA-K1-A42X-01A-11R-A24X-07 Nchr7~10124903~Nchr7~9906546 intergenic "-," "-," chr7~chr7 10124903 9906546 16 -- 2.273966 13 10 3 13 18 TCGA-K1-A42X-01A-11R-A24X-07 Nchr9~16410298~Nchr9~16410411 intergenic "-," "-," chr9~chr9 16410298 16410411 3 -- 1.098612 3 3 0 3 2 TCGA-K1-A42X-01A-11R-A24X-07 NchrX~110761576~NchrX~110761708 intergenic "-," "-," chrX~chrX 110761576 110761708 3 -- 1.098612 3 0 3 3 22 TCGA-K1-A42X-01A-11R-A24X-07 NchrX~110764181~NchrX~110764281 intergenic "-," "-," chrX~chrX 110764181 110764281 5 -- 0.950271 5 0 5 5 10 TCGA-K1-A42X-01A-11R-A24X-07 NchrX~110764196~NchrX~110764308 intergenic "-," "-," chrX~chrX 110764196 110764308 3 -- 1.098612 3 0 3 3 6 TCGA-K1-A42X-01A-11R-A24X-07 NchrX~73072109~NchrX~73072006 intergenic "-," "-," chrX~chrX 73072109 73072006 3 ++ 0.636514 3 2 1 3 2 TCGA-K1-A42X-01A-11R-A24X-07 PALM2-AKAP2~Nchr21~41239240 intergenic "PALM2-AKAP2,PALM2,PALM2-AKAP2,PALM2," "-," chr9~chr21 112694308 41239240 2 ++ 0.693147 2 2 0 2 10 TCGA-K1-A42X-01A-11R-A24X-07 PALM2-AKAP2~Nchr21~41239240 intergenic "PALM2-AKAP2,PALM2," "-," chr9~chr21 112705661 41239240 6 ++ 1.56071 6 3 3 6 42 TCGA-K1-A42X-01A-11R-A24X-07 PALM2-AKAP2~PCP4 fusion "PALM2-AKAP2,PALM2,PALM2-AKAP2,PALM2," "PCP4," chr9~chr21 112694308 41300909 2 ++ 0.693147 2 2 0 2 12 TCGA-K1-A42X-01A-11R-A24X-07 PDLIM1~PLCE1 fusion "PDLIM1," "PLCE1," chr10~chr10 97006972 95987063 4 -+ 1.386294 4 1 3 4 12 TCGA-K1-A42X-01A-11R-A24X-07 PMM1~Nchr22~41951872 intergenic "PMM1," "-," chr22~chr22 41985723 41951872 14 -+ 2.106577 4 2 2 4 32 TCGA-K1-A42X-01A-11R-A24X-07 PRR16~CTD-2334D19.1 fusion "PRR16," "CTD-2334D19.1," chr5~chr5 119800340 120125649 3 ++ 1.098612 3 1 2 3 4 TCGA-K1-A42X-01A-11R-A24X-07 RP11-123O10.4~GRIP1 fusion "RP11-123O10.4," "GRIP1," chr12~chr12 67462830 66990707 7 -- 1.549826 3 0 3 3 4 TCGA-K1-A42X-01A-11R-A24X-07 RP11-371M22.1~Nchr5~113696642 intergenic "RP11-371M22.1," "-," chr5~chr5 113392868 113696642 3 ++ 1.098612 3 1 2 3 64 TCGA-K1-A42X-01A-11R-A24X-07 SEC22B~Nchr16~33934424 intergenic "SEC22B," "-," chr1~chr16 145112519 33934424 7 +- 1.747868 5 4 1 5 12 TCGA-K1-A42X-01A-11R-A24X-07 SEC22B~Nchr16~33938108 intergenic "SEC22B," "-," chr1~chr16 145112519 33938108 10 +- 1.886697 6 3 3 6 14 TCGA-K1-A42X-01A-11R-A24X-07 SMAD3~AAGAB fusion "SMAD3," "AAGAB," chr15~chr15 67358698 67495236 12 +- 1.907284 12 1 11 12 72 TCGA-K1-A42X-01A-11R-A24X-07 SMAD3~AAGAB fusion "SMAD3," "AAGAB," chr15~chr15 67358698 67496486 12 +- 2.138333 12 3 9 12 136 TCGA-K1-A42X-01A-11R-A24X-07 SOCS7~Nchr20~48848442 intergenic "SOCS7," "-," chr17~chr20 36523933 48848442 6 ++ 1.56071 6 5 1 6 34 TCGA-K1-A42X-01A-11R-A24X-07 SOCS7~Nchr20~48874895 intergenic "SOCS7," "-," chr17~chr20 36523933 48874895 56 ++ 2.713159 45 26 19 45 66 TCGA-K1-A42X-01A-11R-A24X-07 THOC1~GLI3 fusion "THOC1," "GLI3," chr18~chr7 223440 42262894 11 -- 1.798652 8 6 2 8 18 TCGA-K1-A42X-01A-11R-A24X-07 TOPBP1~SPDEF fusion "TOPBP1," "SPDEF," chr3~chr6 133341935 34512261 10 -- 1.695743 9 1 8 9 30 TCGA-K1-A42X-01A-11R-A24X-07 UHRF1BP1L~Nchr12~98887262 intergenic "UHRF1BP1L," "-," chr12~chr12 100536370 98887262 7 -- 1.277034 7 2 5 7 6 TCGA-K1-A42X-01A-11R-A24X-07 ZDHHC14~ARID1B fusion "ZDHHC14," "ARID1B," chr6~chr6 157803298 157431606 5 ++ 1.332179 5 2 3 5 14 TCGA-K1-A42X-01A-11R-A24X-07 ZDHHC14~ARID1B fusion "ZDHHC14," "ARID1B," chr6~chr6 157867004 157431606 2 ++ 0.693147 2 2 0 2 2 TCGA-K1-A42X-01A-11R-A24X-07 ZNF236~QRSL1 fusion "ZNF236," "QRSL1," chr18~chr6 74563895 107088224 33 ++ 1.914867 32 18 14 32 76 TCGA-KF-A41W-01A-11R-A24X-07 AC096579.13~NchrY~13629437 intergenic "IGKJ2,AC096579.13," "-," chr2~chrY 89161070 13629437 15 ++ 2.338372 7 6 1 7 20 TCGA-KF-A41W-01A-11R-A24X-07 ACBD5~Nchr10~7019984 intergenic "ACBD5," "-," chr10~chr10 27529248 7019984 7 -+ 1.747868 7 7 0 7 40 TCGA-KF-A41W-01A-11R-A24X-07 ATP11A~ADPRHL1 fusion "ATP11A," "ADPRHL1," chr13~chr13 113439571 114088182 9 +- 2.043192 8 2 6 8 38 TCGA-KF-A41W-01A-11R-A24X-07 ATP11A~GRTP1-AS1 fusion "ATP11A," "GRTP1-AS1," chr13~chr13 113477723 114015874 12 ++ 2.094729 12 2 10 12 52 TCGA-KF-A41W-01A-11R-A24X-07 ATP11A~Nchr13~114030957 intergenic "ATP11A," "-," chr13~chr13 113439571 114030957 40 +- 2.861012 35 7 28 35 114 TCGA-KF-A41W-01A-11R-A24X-07 ATP11A~PROZ fusion "ATP11A," "PROZ," chr13~chr13 113516889 113824727 18 ++ 2.033 16 9 7 16 28 TCGA-KF-A41W-01A-11R-A24X-07 CUL4A~F7 fusion "CUL4A," "F7," chr13~chr13 113893865 113771787 15 ++ 2.395908 14 4 10 14 50 TCGA-KF-A41W-01A-11R-A24X-07 DCUN1D2~ATP11A fusion "DCUN1D2," "ATP11A," chr13~chr13 114134890 113439449 22 -+ 2.426984 14 2 11 14 52 TCGA-KF-A41W-01A-11R-A24X-07 DCUN1D2~TFDP1 fusion "DCUN1D2," "TFDP1," chr13~chr13 114128439 114290292 5 -+ 1.05492 5 0 5 5 4 TCGA-KF-A41W-01A-11R-A24X-07 KIAA1328~Nchr18~29065747 intergenic "KIAA1328," "-," chr18~chr18 34424265 29065747 5 +- 1.05492 5 4 1 5 12 TCGA-KF-A41W-01A-11R-A24X-07 LAMP1~F7 fusion "LAMP1," "F7," chr13~chr13 113960921 113765004 2 ++ 0.693147 2 1 1 2 18 TCGA-KF-A41W-01A-11R-A24X-07 MB21D1~Nchr6~74384613 intergenic "MB21D1," "-," chr6~chr6 74149932 74384613 4 -- 0.562335 4 2 2 4 26 TCGA-KF-A41W-01A-11R-A24X-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 69 -+ 2.15583 27 0 27 27 28 TCGA-KF-A41W-01A-11R-A24X-07 Nchr13~114065171~MCF2L intergenic "-," "MCF2L," chr13~chr13 114065171 113669077 8 -+ 1.255482 8 5 3 8 36 TCGA-KF-A41W-01A-11R-A24X-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 12 -+ 1.748155 11 6 5 11 62 TCGA-KF-A41W-01A-11R-A24X-07 Nchr2~81709228~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81709228 82075877 2 ++ 0.693147 2 0 2 2 16 TCGA-KF-A41W-01A-11R-A24X-07 Nchr2~81775871~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81775871 82075877 13 ++ 2.098147 6 4 2 6 22 TCGA-KF-A41W-01A-11R-A24X-07 SLC39A14~IL4I1 fusion "SLC39A14," "IL4I1," chr8~chr19 22224921 50399310 11 +- 1.972247 11 11 0 11 14 TCGA-KF-A41W-01A-11R-A24X-07 SLC39A14~IL4I1 fusion "SLC39A14," "IL4I1," chr8~chr19 22224921 50399439 2 +- 0.693147 2 1 1 2 14 TCGA-KF-A41W-01A-11R-A24X-07 TMCO3~ATP11A fusion "TMCO3," "ATP11A," chr13~chr13 114157903 113439449 3 ++ 1.098612 3 0 3 3 12 TCGA-KF-A41W-01A-11R-A24X-07 TMCO3~ATP11A fusion "TMCO3," "ATP11A," chr13~chr13 114188555 113439449 2 ++ 0.693147 2 1 1 2 22 TCGA-KF-A41W-01A-11R-A24X-07 TMCO3~ATP11A fusion "TMCO3," "ATP11A," chr13~chr13 114193822 113439449 20 ++ 2.345737 13 7 6 13 150 TCGA-KF-A41W-01A-11R-A24X-07 TMCO3~GRTP1 fusion "TMCO3," "GRTP1," chr13~chr13 114193822 113980406 3 +- 1.098612 3 2 1 3 38 TCGA-KF-A41W-01A-11R-A24X-07 TMCO3~MCF2L fusion "TMCO3," "MCF2L," chr13~chr13 114193822 113699585 3 ++ 0.636514 2 2 0 2 12 TCGA-KF-A41W-01A-11R-A24X-07 TMCO3~Nchr13~113372744 intergenic "TMCO3," "-," chr13~chr13 114193822 113372744 4 ++ 1.039721 4 3 1 4 16 TCGA-KF-A41W-01A-11R-A24X-07 TMCO3~Nchr13~113414307 intergenic "TMCO3," "-," chr13~chr13 114193822 113414307 15 ++ 2.083766 15 9 6 15 110 TCGA-KF-A41W-01A-11R-A24X-07 TMCO3~Nchr13~113807942 intergenic "TMCO3," "-," chr13~chr13 114193822 113807942 7 ++ 1.549826 7 3 4 7 20 TCGA-KF-A41W-01A-11R-A24X-07 TMCO3~PRKCZ fusion "TMCO3," "PRKCZ," chr13~chr1 114193822 2100957 5 ++ 1.332179 5 1 4 5 6 TCGA-KF-A41W-01A-11R-A24X-07 TMCO3~RP11-144L2.1 fusion "TMCO3," "RP11-144L2.1," chr13~chr13 114193822 113371636 248 ++ 3.042777 234 80 154 234 1052 TCGA-KF-A41W-01A-11R-A24X-07 TMCO3~RP11-144L2.1 fusion "TMCO3," "RP11-144L2.1," chr13~chr13 114201694 113371636 11 ++ 1.893788 11 1 10 11 1048 TCGA-KF-A41W-01A-11R-A24X-07 TSHZ1~RNASEH2B fusion "TSHZ1," "RNASEH2B," chr18~chr13 72923871 51501543 10 ++ 1.418484 9 9 0 9 18 TCGA-K1-A42X-02A-11R-A24X-07 AAGAB~SMAD3 fusion "AAGAB," "SMAD3," chr15~chr15 67500900 67457233 10 -+ 1.886697 10 6 4 10 16 TCGA-K1-A42X-02A-11R-A24X-07 ABCC4~Nchr13~96003967 intergenic "ABCC4," "-," chr13~chr13 95953495 96003967 4 -- 1.039721 4 2 2 4 6 TCGA-K1-A42X-02A-11R-A24X-07 ATRN~UQCRB fusion "ATRN," "UQCRB," chr20~chr8 3541552 97245455 27 +- 2.345467 25 14 11 25 112 TCGA-K1-A42X-02A-11R-A24X-07 HHIPL1~CCNK fusion "HHIPL1," "CCNK," chr14~chr14 100112192 99973413 6 ++ 1.791759 6 4 2 6 30 TCGA-K1-A42X-02A-11R-A24X-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 60 -- 2.539532 60 60 0 60 8 TCGA-K1-A42X-02A-11R-A24X-07 KLHL13~NchrX~119628873 intergenic "KLHL13," "-," chrX~chrX 117207205 119628873 3 -- 0.636514 3 0 3 3 76 TCGA-K1-A42X-02A-11R-A24X-07 LATS2~MYLK fusion "LATS2," "MYLK," chr13~chr3 21634492 123386034 2 -- 0.693147 2 1 1 2 8 TCGA-K1-A42X-02A-11R-A24X-07 LATS2~MYLK fusion "LATS2," "MYLK," chr13~chr3 21634269 123386034 4 -- 0.562335 4 3 1 4 54 TCGA-K1-A42X-02A-11R-A24X-07 LATS2~MYLK fusion "LATS2," "MYLK," chr13~chr3 21634333 123386034 25 -- 2.490665 23 11 12 23 54 TCGA-K1-A42X-02A-11R-A24X-07 LATS2~MYLK fusion "LATS2," "MYLK," chr13~chr3 21635485 123386034 56 -- 2.554048 52 11 41 52 190 TCGA-K1-A42X-02A-11R-A24X-07 MYLK~Nchr13~21658894 intergenic "MYLK," "-," chr3~chr13 123375973 21658894 10 -- 2.163956 10 5 5 10 22 TCGA-K1-A42X-02A-11R-A24X-07 MYLK~Nchr13~21665819 intergenic "MYLK," "-," chr3~chr13 123375973 21665819 32 -- 2.91868 33 11 21 33 72 TCGA-K1-A42X-02A-11R-A24X-07 MYLK~Nchr13~21665819 intergenic "MYLK," "-," chr3~chr13 123375992 21665819 2 -- 0.693147 2 1 1 2 66 TCGA-K1-A42X-02A-11R-A24X-07 MYLK~Nchr13~21677369 intergenic "MYLK," "-," chr3~chr13 123375973 21677369 3 -- 1.098612 3 3 0 3 26 TCGA-K1-A42X-02A-11R-A24X-07 MYLK~Nchr13~21689034 intergenic "MYLK," "-," chr3~chr13 123375973 21689034 13 -- 1.925121 13 11 2 13 54 TCGA-K1-A42X-02A-11R-A24X-07 MYLK~Nchr13~21689049 intergenic "MYLK," "-," chr3~chr13 123375973 21689049 3 -- 0.636514 3 1 2 3 54 TCGA-K1-A42X-02A-11R-A24X-07 Nchr10~107780563~Nchr10~107433446 intergenic "-," "-," chr10~chr10 107780563 107433446 5 -- 1.609438 4 1 3 4 8 TCGA-K1-A42X-02A-11R-A24X-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 37 -+ 2.457879 20 0 20 20 24 TCGA-K1-A42X-02A-11R-A24X-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 5 ++ 1.332179 4 1 3 4 8 TCGA-K1-A42X-02A-11R-A24X-07 Nchr1~173431463~TNFSF4 intergenic "-," "TNFSF4," chr1~chr1 173431463 173157708 3 -- 1.098612 1 0 1 1 20 TCGA-K1-A42X-02A-11R-A24X-07 Nchr1~173431463~TNFSF4 intergenic "-," "TNFSF4," chr1~chr1 173431463 173176324 3 -- 0.636514 3 1 2 3 32 TCGA-K1-A42X-02A-11R-A24X-07 Nchr1~173445771~TNFSF4 intergenic "-," "TNFSF4," chr1~chr1 173445771 173157708 2 -- 0.693147 2 2 0 2 6 TCGA-K1-A42X-02A-11R-A24X-07 Nchr1~35816322~RPL5 intergenic "-," "RPL5," chr1~chr1 35816322 93297597 3 -+ 1.098612 2 0 2 2 6 TCGA-K1-A42X-02A-11R-A24X-07 Nchr22~41951963~POLR3H intergenic "-," "POLR3H," chr22~chr22 41951963 41940125 19 +- 2.360736 12 11 1 12 32 TCGA-K1-A42X-02A-11R-A24X-07 Nchr2~139258325~Nchr2~139057107 intergenic "-," "-," chr2~chr2 139258325 139057107 7 -- 1.277034 6 6 0 6 6 TCGA-K1-A42X-02A-11R-A24X-07 Nchr2~67095410~AC007392.3 intergenic "-," "AC007392.3," chr2~chr2 67095410 66918804 2 ++ 0.693147 1 1 0 1 4 TCGA-K1-A42X-02A-11R-A24X-07 Nchr5~113441478~Nchr5~113696642 intergenic "-," "-," chr5~chr5 113441478 113696642 8 ++ 1.667462 8 3 5 8 78 TCGA-K1-A42X-02A-11R-A24X-07 Nchr6~29856475~HLA-B intergenic "-," "HLA-B," chr6~chr6 29856475 31323322 2 -- 0.693147 2 1 1 2 20 TCGA-K1-A42X-02A-11R-A24X-07 Nchr6~8558876~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8558876 8784424 7 ++ 1.747868 3 1 2 3 2 TCGA-K1-A42X-02A-11R-A24X-07 Nchr7~10124903~AC060834.3 intergenic "-," "AC060834.3," chr7~chr7 10124903 9799692 6 -- 1.56071 6 2 4 6 4 TCGA-K1-A42X-02A-11R-A24X-07 Nchr7~10124903~Nchr7~9906546 intergenic "-," "-," chr7~chr7 10124903 9906546 16 -- 1.981333 9 3 6 9 8 TCGA-K1-A42X-02A-11R-A24X-07 NchrX~110764207~NchrX~110764427 intergenic "-," "-," chrX~chrX 110764207 110764427 2 -- 0.693147 2 0 2 2 24 TCGA-K1-A42X-02A-11R-A24X-07 NchrX~110765236~NchrX~110765441 intergenic "-," "-," chrX~chrX 110765236 110765441 2 -- 0.693147 2 2 0 2 54 TCGA-K1-A42X-02A-11R-A24X-07 PALM2-AKAP2~Nchr21~41239240 intergenic "PALM2-AKAP2,PALM2,PALM2-AKAP2,PALM2," "-," chr9~chr21 112694308 41239240 3 ++ 1.098612 3 1 2 3 20 TCGA-K1-A42X-02A-11R-A24X-07 PDLIM1~PLCE1 fusion "PDLIM1," "PLCE1," chr10~chr10 97006972 95987063 3 -+ 1.098612 3 1 2 3 20 TCGA-K1-A42X-02A-11R-A24X-07 PMM1~Nchr22~41951872 intergenic "PMM1," "-," chr22~chr22 41985723 41951872 12 -+ 2.138333 2 1 1 2 10 TCGA-K1-A42X-02A-11R-A24X-07 RP11-371M22.1~Nchr5~113659398 intergenic "RP11-371M22.1," "-," chr5~chr5 113392868 113659398 2 ++ 0.693147 2 0 2 2 8 TCGA-K1-A42X-02A-11R-A24X-07 RP11-371M22.1~Nchr5~113696642 intergenic "RP11-371M22.1," "-," chr5~chr5 113392868 113696642 7 ++ 1.747868 7 4 3 7 46 TCGA-K1-A42X-02A-11R-A24X-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 4 ++ 1.039721 4 4 0 4 34 TCGA-K1-A42X-02A-11R-A24X-07 SAMD5~SASH1 fusion "SAMD5," "SASH1," chr6~chr6 147830523 148711270 3 ++ 1.098612 1 0 1 1 2 TCGA-K1-A42X-02A-11R-A24X-07 SEC22B~Nchr16~33934424 intergenic "SEC22B," "-," chr1~chr16 145112519 33934424 4 +- 1.039721 4 2 2 4 14 TCGA-K1-A42X-02A-11R-A24X-07 SEC22B~Nchr16~33938108 intergenic "SEC22B," "-," chr1~chr16 145112519 33938108 5 +- 1.332179 3 2 1 3 6 TCGA-K1-A42X-02A-11R-A24X-07 SMAD3~AAGAB fusion "SMAD3," "AAGAB," chr15~chr15 67358698 67495236 8 +- 1.906155 8 1 7 8 64 TCGA-K1-A42X-02A-11R-A24X-07 SMAD3~AAGAB fusion "SMAD3," "AAGAB," chr15~chr15 67358698 67496486 10 +- 1.886697 10 4 6 10 110 TCGA-K1-A42X-02A-11R-A24X-07 SOCS7~Nchr20~48848442 intergenic "SOCS7," "-," chr17~chr20 36523933 48848442 4 ++ 1.039721 2 0 2 2 52 TCGA-K1-A42X-02A-11R-A24X-07 SOCS7~Nchr20~48874895 intergenic "SOCS7," "-," chr17~chr20 36523933 48874895 43 ++ 2.83416 40 28 12 40 92 TCGA-K1-A42X-02A-11R-A24X-07 TBCA~ACTB fusion "TBCA," "ACTB," chr5~chr7 77080822 5569339 1 -- 0.693147 1 0 0 1 140 TCGA-K1-A42X-02A-11R-A24X-07 TOPBP1~SPDEF fusion "TOPBP1," "SPDEF," chr3~chr6 133341935 34512261 21 -- 2.75555 19 11 8 19 68 TCGA-K1-A42X-02A-11R-A24X-07 ZNF236~QRSL1 fusion "ZNF236," "QRSL1," chr18~chr6 74563895 107088224 25 ++ 2.65702 23 17 6 23 116 TCGA-IF-A4AK-01A-21R-A24X-07 C15orf57~CBX3 fusion "C15orf57," "CBX3," chr15~chr7 40854971 26241389 4 -+ 1.386294 4 3 1 4 4 TCGA-IF-A4AK-01A-21R-A24X-07 C1orf132~CD34 fusion "C1orf132," "CD34," chr1~chr1 207989274 208062966 2 -- 0.693147 2 1 1 2 8 TCGA-IF-A4AK-01A-21R-A24X-07 COX10~Nchr17~10951894 intergenic "COX10," "-," chr17~chr17 14005559 10951894 7 +- 1.747868 7 5 2 7 10 TCGA-IF-A4AK-01A-21R-A24X-07 DES~FLNA fusion "DES," "FLNA," chr2~chrX 220290785 153582525 4 +- 1.039721 2 1 1 2 2 TCGA-IF-A4AK-01A-21R-A24X-07 DOCK7~NMT2 fusion "DOCK7," "NMT2," chr1~chr10 63153898 15183556 4 -- 1.039721 4 0 4 4 6 TCGA-IF-A4AK-01A-21R-A24X-07 EIF4ENIF1~Nchr13~48751472 intergenic "EIF4ENIF1," "-," chr22~chr13 31864161 48751472 34 -- 2.906664 25 8 16 25 52 TCGA-IF-A4AK-01A-21R-A24X-07 FRYL~Nchr13~40214443 intergenic "FRYL," "-," chr4~chr13 48686690 40214443 30 -+ 2.513822 28 19 9 28 100 TCGA-IF-A4AK-01A-21R-A24X-07 FRYL~Nchr13~40214443 intergenic "FRYL," "-," chr4~chr13 48712536 40214443 3 -+ 0.636514 3 1 2 3 38 TCGA-IF-A4AK-01A-21R-A24X-07 GIGYF2~EEF1B2 fusion "GIGYF2," "EEF1B2," chr2~chr2 233594854 207024743 3 ++ 1.098612 1 1 0 1 2 TCGA-IF-A4AK-01A-21R-A24X-07 GRTP1~C21orf56 fusion "GRTP1-AS1,GRTP1," "C21orf56," chr13~chr21 114009638 47581981 4 -- 1.386294 4 3 1 4 22 TCGA-IF-A4AK-01A-21R-A24X-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31236564 31321721 2 -- 0.693147 1 1 0 1 18 TCGA-IF-A4AK-01A-21R-A24X-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31236793 31321968 2 -- 0.693147 2 1 1 2 810 TCGA-IF-A4AK-01A-21R-A24X-07 LSS~EIF4ENIF1 fusion "LSS," "EIF4ENIF1,RP11-247I13.8,RP11-247I13.11," chr21~chr22 47625750 31859953 4 -- 1.386294 3 1 2 3 10 TCGA-IF-A4AK-01A-21R-A24X-07 Nchr11~27603245~RPS25 intergenic "-," "RPS25," chr11~chr11 27603245 118889038 3 -- 1.098612 3 0 3 3 22 TCGA-IF-A4AK-01A-21R-A24X-07 Nchr11~65273331~Nchr11~65273428 intergenic "-," "-," chr11~chr11 65273331 65273428 2 -- 0.693147 2 0 2 2 2 TCGA-IF-A4AK-01A-21R-A24X-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 54 -+ 2.460086 34 0 34 34 12 TCGA-IF-A4AK-01A-21R-A24X-07 Nchr15~21916043~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21916043 20876597 2 -- 0.693147 2 1 1 2 6 TCGA-IF-A4AK-01A-21R-A24X-07 Nchr18~37115422~Nchr18~36788753 intergenic "-," "-," chr18~chr18 37115422 36788753 5 -- 1.332179 4 4 0 4 10 TCGA-IF-A4AK-01A-21R-A24X-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 8 -+ 1.732868 8 5 3 8 64 TCGA-IF-A4AK-01A-21R-A24X-07 Nchr1~207979350~CD34 intergenic "-," "CD34," chr1~chr1 207979350 208062966 8 -- 1.494175 8 8 0 8 28 TCGA-IF-A4AK-01A-21R-A24X-07 Nchr20~29653686~Nchr9~68422207 intergenic "-," "-," chr20~chr9 29653686 68422207 4 +- 1.386294 3 2 1 3 4 TCGA-IF-A4AK-01A-21R-A24X-07 Nchr3~27674740~Nchr3~27674604 intergenic "-," "-," chr3~chr3 27674740 27674604 2 ++ 0.693147 2 2 0 2 2 TCGA-IF-A4AK-01A-21R-A24X-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 39 ++ 2.397781 1 0 1 1 2 TCGA-IF-A4AK-01A-21R-A24X-07 NchrX~124318557~ODZ1 intergenic "-," "ODZ1," chrX~chrX 124318557 124097666 3 -- 1.098612 3 3 0 3 2 TCGA-IF-A4AK-01A-21R-A24X-07 PDLIM5~Nchr4~4051909 intergenic "PDLIM5," "-," chr4~chr4 95497185 4051909 45 +- 2.730321 48 39 3 48 104 TCGA-IF-A4AK-01A-21R-A24X-07 RB1~FRYL fusion "RB1," "FRYL," chr13~chr4 49039504 48636507 4 +- 1.039721 4 3 1 4 12 TCGA-IF-A4AK-01A-21R-A24X-07 RP11-123O10.4~GRIP1 fusion "RP11-123O10.4," "GRIP1," chr12~chr12 67462830 66990707 4 -- 1.039721 3 2 1 3 4 TCGA-IF-A4AK-01A-21R-A24X-07 RP11-371M22.1~Nchr5~113696642 intergenic "RP11-371M22.1," "-," chr5~chr5 113392868 113696642 4 ++ 1.039721 4 4 0 4 12 TCGA-IF-A4AK-01A-21R-A24X-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 3 ++ 1.098612 3 3 0 3 8 TCGA-IF-A4AK-01A-21R-A24X-07 RP4-695O20__B.10~PDLIM5 fusion "RP4-695O20__B.10," "PDLIM5," chr22~chr4 46505788 95506716 3 ++ 1.098612 2 1 1 2 2 TCGA-IF-A4AJ-01A-11R-A24X-07 CPSF4~RP11-762I7.5 fusion "CPSF4," "RP11-762I7.5,SARNP," chr7~chr12 99040711 56184376 6 +- 1.011404 6 5 1 6 14 TCGA-IF-A4AJ-01A-11R-A24X-07 FEN1~Nchr11~61434896 intergenic "FEN1," "-," chr11~chr11 61560500 61434896 3 ++ 0.636514 3 2 1 3 6 TCGA-IF-A4AJ-01A-11R-A24X-07 GAPDH~NchrX~46299827 intergenic "GAPDH," "-," chr12~chrX 6646369 46299827 2 -- 0.693147 1 1 0 1 88 TCGA-IF-A4AJ-01A-11R-A24X-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31236564 31321721 2 -- 0.693147 2 2 0 2 12 TCGA-IF-A4AJ-01A-11R-A24X-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31236793 31321968 2 -- 0.693147 1 0 1 1 1388 TCGA-IF-A4AJ-01A-11R-A24X-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 294 -- 2.033685 291 291 0 291 278 TCGA-IF-A4AJ-01A-11R-A24X-07 HLA-L~Nchr6~29864828 intergenic "HLA-L," "-," chr6~chr6 30229256 29864828 1939 ++ 2.043086 287 283 4 287 8 TCGA-IF-A4AJ-01A-11R-A24X-07 Nchr11~65193536~Nchr11~65193634 intergenic "-," "-," chr11~chr11 65193536 65193634 3 -- 0.636514 3 0 3 3 2 TCGA-IF-A4AJ-01A-11R-A24X-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 42 -+ 2.431922 22 0 22 22 26 TCGA-IF-A4AJ-01A-11R-A24X-07 Nchr12~24366277~SOX5 intergenic "-," "SOX5," chr12~chr12 24366277 24048958 3 -- 1.098612 2 2 0 2 2 TCGA-IF-A4AJ-01A-11R-A24X-07 Nchr12~24430150~SOX5 intergenic "-," "SOX5," chr12~chr12 24430150 24048958 3 -- 0.636514 3 3 0 3 2 TCGA-IF-A4AJ-01A-11R-A24X-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 15 -+ 2.211069 13 7 6 13 150 TCGA-IF-A4AJ-01A-11R-A24X-07 Nchr22~24198619~AGT intergenic "-," "AGT," chr22~chr1 24198619 230840083 2 -- 0.693147 1 1 0 1 6 TCGA-IF-A4AJ-01A-11R-A24X-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 6 ++ 1.56071 5 5 0 5 2 TCGA-IF-A4AJ-01A-11R-A24X-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 92 ++ 2.88568 7 0 7 7 18 TCGA-IF-A4AJ-01A-11R-A24X-07 Nchr9~19200845~RPS6 intergenic "-," "RPS6," chr9~chr9 19200845 19379586 3 -- 0.636514 3 0 3 3 20 TCGA-IF-A4AJ-01A-11R-A24X-07 PDS5B~Nchr13~80830679 intergenic "PDS5B," "-," chr13~chr13 33160730 80830679 3 ++ 1.098612 3 0 3 3 2 TCGA-IF-A4AJ-01A-11R-A24X-07 SMCHD1~NDC80 fusion "SMCHD1," "NDC80," chr18~chr18 2732490 2599018 80 ++ 2.62322 79 49 28 79 196 TCGA-K1-A42W-01A-11R-A24X-07 GAPDH~NchrX~46299827 intergenic "GAPDH," "-," chr12~chrX 6646369 46299827 6 -- 1.242453 2 2 0 2 226 TCGA-K1-A42W-01A-11R-A24X-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31237743 31322442 22 -- 2.200516 17 4 13 17 22 TCGA-K1-A42W-01A-11R-A24X-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 456 -- 2.144517 456 455 1 456 528 TCGA-K1-A42W-01A-11R-A24X-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238854 31324034 2 -- 0.693147 1 1 0 1 6 TCGA-K1-A42W-01A-11R-A24X-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238905 31324034 7 -- 1.351784 5 5 0 5 6 TCGA-K1-A42W-01A-11R-A24X-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 336 -- 2.713672 185 63 122 185 8 TCGA-K1-A42W-01A-11R-A24X-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 80 -+ 2.438305 28 0 28 28 44 TCGA-K1-A42W-01A-11R-A24X-07 Nchr12~9212152~A2M intergenic "-," "A2M," chr12~chr12 9212152 9224972 6 -+ 1.242453 2 1 1 2 1102 TCGA-K1-A42W-01A-11R-A24X-07 Nchr13~76509067~Nchr13~76841631 intergenic "-," "-," chr13~chr13 76509067 76841631 8 ++ 1.073543 8 6 2 8 16 TCGA-K1-A42W-01A-11R-A24X-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 34 -+ 2.649335 31 16 15 31 190 TCGA-K1-A42W-01A-11R-A24X-07 Nchr1~192685339~Nchr1~192685560 intergenic "-," "-," chr1~chr1 192685339 192685560 6 -- 0.450561 6 6 0 6 4 TCGA-K1-A42W-01A-11R-A24X-07 Nchr1~99473933~RPL5 intergenic "-," "RPL5," chr1~chr1 99473933 93306108 5 ++ 1.332179 2 2 0 2 8 TCGA-K1-A42W-01A-11R-A24X-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 4 -- 1.039721 4 4 0 4 8 TCGA-K1-A42W-01A-11R-A24X-07 Nchr7~110514869~IMMP2L intergenic "-," "IMMP2L," chr7~chr7 110514869 110303777 19 -- 1.512137 18 13 5 18 114 TCGA-K1-A42W-01A-11R-A24X-07 PTK2~TRAPPC9 fusion "PTK2," "TRAPPC9," chr8~chr8 141828376 141461482 5 -- 0.500402 5 1 4 5 8 TCGA-K1-A42W-01A-11R-A24X-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 6 ++ 1.098612 6 2 4 6 22 TCGA-IE-A4EJ-01A-11R-A24X-07 AC011497.1~Nchr19~43155239 intergenic "AC011497.1," "-," chr19~chr19 42929356 43155239 4 ++ 1.039721 3 2 1 3 6 TCGA-IE-A4EJ-01A-11R-A24X-07 C4orf14~Nchr7~48868806 intergenic "C4orf14," "-," chr4~chr7 57842608 48868806 69 -+ 2.817157 65 36 29 65 264 TCGA-IE-A4EJ-01A-11R-A24X-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267409 94040447 2 -+ 0.693147 2 1 1 2 4 TCGA-IE-A4EJ-01A-11R-A24X-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94053755 48273026 2 +- 0.693147 1 1 0 1 6 TCGA-IE-A4EJ-01A-11R-A24X-07 DCUN1D4~IKZF1 fusion "DCUN1D4," "IKZF1," chr4~chr7 52758017 50444231 22 ++ 1.963908 22 10 12 22 52 TCGA-IE-A4EJ-01A-11R-A24X-07 GRASP~Nchr5~103500645 intergenic "GRASP," "-," chr12~chr5 52409524 103500645 19 ++ 2.21481 19 10 9 19 68 TCGA-IE-A4EJ-01A-11R-A24X-07 HLA-B~Nchr6~29895877 intergenic "HLA-B," "-," chr6~chr6 31323340 29895877 5 ++ 1.332179 5 1 4 5 10 TCGA-IE-A4EJ-01A-11R-A24X-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 164 -- 2.090127 164 163 1 164 182 TCGA-IE-A4EJ-01A-11R-A24X-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238905 31324034 6 -- 1.791759 2 2 0 2 64 TCGA-IE-A4EJ-01A-11R-A24X-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 64 -- 1.982699 65 0 64 65 36 TCGA-IE-A4EJ-01A-11R-A24X-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 328 -- 2.515881 198 51 147 198 6 TCGA-IE-A4EJ-01A-11R-A24X-07 IGKV5-2~AC096579.7 fusion "IGKV5-2," "IGKC,AC096579.7," chr2~chr2 89197212 89157196 15 +- 2.211069 12 7 5 12 44 TCGA-IE-A4EJ-01A-11R-A24X-07 IKZF1~Nchr7~52483629 intergenic "IKZF1," "-," chr7~chr7 50459561 52483629 5 ++ 1.332179 4 3 1 4 8 TCGA-IE-A4EJ-01A-11R-A24X-07 IKZF1~TMEM130 fusion "IKZF1," "TMEM130," chr7~chr7 50469002 98467475 9 +- 1.581094 3 0 3 3 44 TCGA-IE-A4EJ-01A-11R-A24X-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151282 4 -- 1.386294 3 1 2 3 14 TCGA-IE-A4EJ-01A-11R-A24X-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 18 -- 2.183187 11 3 8 11 14 TCGA-IE-A4EJ-01A-11R-A24X-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 15 -+ 2.306669 14 5 8 14 122 TCGA-IE-A4EJ-01A-11R-A24X-07 Nchr2~177065929~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065929 177065788 3 ++ 1.098612 3 0 3 3 24 TCGA-IE-A4EJ-01A-11R-A24X-07 Nchr2~81775871~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81775871 82075877 2 ++ 0.693147 2 1 1 2 4 TCGA-IE-A4EJ-01A-11R-A24X-07 Nchr6~8438264~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8438264 8784424 3 ++ 0.636514 3 3 0 3 12 TCGA-IE-A4EJ-01A-11R-A24X-07 Nchr9~85111773~Nchr9~85394794 intergenic "-," "-," chr9~chr9 85111773 85394794 4 ++ 0.562335 4 3 1 4 10 TCGA-IE-A4EJ-01A-11R-A24X-07 PIR~ZNF138 fusion "PIR," "ZNF138," chrX~chr7 15415571 64291829 8 -+ 1.494175 8 7 1 8 6 TCGA-IE-A4EJ-01A-11R-A24X-07 POLR2B~Nchr7~53847731 intergenic "POLR2B," "-," chr4~chr7 57861575 53847731 5 +- 0.950271 4 0 4 4 38 TCGA-IE-A4EJ-01A-11R-A24X-07 POLR2B~Nchr7~53847923 intergenic "POLR2B," "-," chr4~chr7 57861575 53847923 8 +- 1.213008 7 5 2 7 54 TCGA-IE-A4EJ-01A-11R-A24X-07 RP11-725D20.1~Nchr7~48868806 intergenic "RP11-725D20.1," "-," chr4~chr7 60491604 48868806 28 ++ 2.533485 12 0 12 12 12 TCGA-IE-A4EJ-01A-11R-A24X-07 SMOC2~Nchr6~169074833 intergenic "SMOC2," "-," chr6~chr6 168949883 169074833 6 +- 1.329661 6 1 5 6 16 TCGA-IE-A4EJ-01A-11R-A24X-07 XYLT1~ABR fusion "XYLT1," "ABR," chr16~chr17 17352845 1028702 6 -- 1.56071 5 2 3 5 8 TCGA-IE-A4EJ-01A-11R-A24X-07 XYLT1~Nchr17~1145485 intergenic "XYLT1," "-," chr16~chr17 17352845 1145485 2 -- 0.693147 2 1 1 2 8 TCGA-IE-A4EJ-01A-11R-A24X-07 XYLT1~Nchr17~1162853 intergenic "XYLT1," "-," chr16~chr17 17352845 1162853 8 -- 1.039721 8 4 4 8 4 TCGA-IE-A4EJ-01A-11R-A24X-07 ZCCHC4~Nchr5~29126868 intergenic "ZCCHC4," "-," chr4~chr5 25335610 29126868 2 +- 0.693147 2 0 2 2 4 TCGA-IE-A4EJ-01A-11R-A24X-07 ZCCHC4~Nchr5~29151435 intergenic "ZCCHC4," "-," chr4~chr5 25335610 29151435 2 +- 0.693147 2 1 1 2 4 TCGA-IE-A4EK-01A-11R-A24X-07 Nchr10~77421091~C10orf11 intergenic "-," "C10orf11," chr10~chr10 77421091 77795766 6 ++ 1.011404 4 0 4 4 22 TCGA-IE-A4EK-01A-11R-A24X-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 49 -+ 2.313432 24 0 24 24 48 TCGA-IE-A4EK-01A-11R-A24X-07 Nchr13~82264413~Nchr13~82264270 intergenic "-," "-," chr13~chr13 82264413 82264270 3 ++ 0.636514 3 1 2 3 2 TCGA-IE-A4EK-01A-11R-A24X-07 Nchr14~90085372~FOXN3 intergenic "-," "FOXN3," chr14~chr14 90085372 89878834 2 -- 0.693147 2 2 0 2 2 TCGA-IE-A4EK-01A-11R-A24X-07 Nchr3~187872040~LPP intergenic "-," "LPP," chr3~chr3 187872040 188123900 7 ++ 1.747868 4 0 4 4 4 TCGA-IE-A4EK-01A-11R-A24X-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 4 ++ 1.039721 4 4 0 4 2 TCGA-IE-A4EK-01A-11R-A24X-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 26 ++ 2.288636 2 0 2 2 2 TCGA-IE-A4EK-01A-11R-A24X-07 TPM2~ACTG1 fusion "TPM2," "ACTG1," chr9~chr17 35685061 79478652 6 -- 1.329661 6 0 6 6 4 TCGA-IE-A4EI-01A-11R-A24X-07 HLA-B~Nchr6~29902006 intergenic "HLA-B," "-," chr6~chr6 31323352 29902006 2 ++ 0.693147 2 2 0 2 40 TCGA-IE-A4EI-01A-11R-A24X-07 HN1~Nchr2~174296244 intergenic "HN1," "-," chr17~chr2 73143651 174296244 14 -- 0.992282 8 8 0 8 2 TCGA-IE-A4EI-01A-11R-A24X-07 HSPB1~Nchr9~74622964 intergenic "HSPB1," "-," chr7~chr9 75932344 74622964 2 -+ 0.693147 1 1 0 1 304 TCGA-IE-A4EI-01A-11R-A24X-07 Nchr19~3468318~Nchr19~3468471 intergenic "-," "-," chr19~chr19 3468318 3468471 2 -- 0.693147 1 1 0 1 4 TCGA-IE-A4EI-01A-11R-A24X-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 5 -+ 1.332179 4 2 2 4 66 TCGA-IE-A4EI-01A-11R-A24X-07 Nchr3~187872040~LPP intergenic "-," "LPP," chr3~chr3 187872040 188123900 3 ++ 1.098612 3 0 3 3 2 TCGA-IE-A4EI-01A-11R-A24X-07 Nchr7~110514869~IMMP2L intergenic "-," "IMMP2L," chr7~chr7 110514869 110303777 3 -- 0.636514 3 2 1 3 8 TCGA-IE-A4EI-01A-11R-A24X-07 Nchr7~140912504~Nchr7~141137408 intergenic "-," "-," chr7~chr7 140912504 141137408 16 ++ 2.187322 7 3 4 7 12 TCGA-IE-A4EI-01A-11R-A24X-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 86 ++ 2.7806 5 3 2 5 2 TCGA-IE-A4EI-01A-11R-A24X-07 RP11-371M22.1~Nchr5~113696642 intergenic "RP11-371M22.1," "-," chr5~chr5 113392868 113696642 3 ++ 1.098612 3 2 1 3 8 TCGA-IE-A4EI-01A-11R-A24X-07 USP9X~LANCL3 fusion "USP9X," "LANCL3," chrX~chrX 41031211 37485807 6 ++ 1.242453 6 4 2 6 22 TCGA-HS-A5N9-01A-11R-A26T-07 DAG1~KPNA6 fusion "DAG1," "KPNA6," chr3~chr1 49507866 32620189 3 ++ 0.636514 2 2 0 2 12 TCGA-HS-A5N9-01A-11R-A26T-07 KIAA1468~Nchr18~60058484 intergenic "KIAA1468," "-," chr18~chr18 59936181 60058484 3 +- 1.098612 3 1 2 3 12 TCGA-HS-A5N9-01A-11R-A26T-07 KPNA6~TRAIP fusion "KPNA6," "TRAIP," chr1~chr3 32573735 49885633 62 +- 2.748663 59 0 59 59 30 TCGA-HS-A5N9-01A-11R-A26T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 76 -+ 2.564267 35 0 33 35 30 TCGA-HS-A5N9-01A-11R-A26T-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 19 -+ 2.37862 18 12 6 18 228 TCGA-HS-A5N9-01A-11R-A26T-07 Nchr2~45223806~KRTCAP2 intergenic "-," "KRTCAP2," chr2~chr1 45223806 155141996 3 -- 1.098612 1 1 0 1 2 TCGA-HS-A5N9-01A-11R-A26T-07 Nchr3~27065268~LRRC3B intergenic "-," "LRRC3B," chr3~chr3 27065268 26715443 4 -- 1.386294 4 4 0 4 8 TCGA-HS-A5N9-01A-11R-A26T-07 Nchr8~128691459~Nchr8~128433208 intergenic "-," "-," chr8~chr8 128691459 128433208 3 -- 0.636514 2 2 0 2 24 TCGA-HS-A5N9-01A-11R-A26T-07 RP11-123O10.4~GRIP1 fusion "RP11-123O10.4," "GRIP1," chr12~chr12 67462830 66990707 5 -- 1.332179 4 1 3 4 8 TCGA-HS-A5N9-01A-11R-A26T-07 RP11-296O14.3~TNFSF4 fusion "RP11-296O14.3," "TNFSF4," chr1~chr1 173411058 173176324 2 -- 0.693147 2 1 1 2 8 TCGA-HS-A5N9-01A-11R-A26T-07 SLC25A13~GTPBP10 fusion "SLC25A13," "GTPBP10," chr7~chr7 95951254 89982130 4 -+ 1.386294 4 2 2 4 14 TCGA-HS-A5N9-01A-11R-A26T-07 SVIL~KIAA1217 fusion "SVIL," "KIAA1217," chr10~chr10 29975482 24508555 4 -+ 1.386294 3 1 2 3 14 TCGA-HS-A5N9-01A-11R-A26T-07 XPC~DAG1 fusion "LSM3,XPC," "DAG1," chr3~chr3 14219966 49547852 19 -+ 1.958727 19 2 17 19 84 TCGA-HS-A5N9-01A-11R-A26T-07 ZNF14~Nchr4~190599264 intergenic "ZNF14," "-," chr19~chr4 19843765 190599264 3 -- 1.098612 2 1 1 2 4 TCGA-HS-A5N9-01A-11R-A26T-07 ZNF69~RAD23A fusion "ZNF69," "RAD23A," chr19~chr19 11998801 13063503 2 ++ 0.693147 2 0 2 2 2 TCGA-HS-A5N9-01A-11R-A26T-07 ZNF763~RAD23A fusion "ZNF763,ZNF700," "RAD23A," chr19~chr19 12036088 13063503 494 ++ 3.262694 477 177 294 477 1070 TCGA-IE-A4EH-01A-11R-A24X-07 ITGA8~FAM188A fusion "ITGA8," "FAM188A," chr10~chr10 15713602 15889942 8 -- 1.732868 8 3 5 8 78 TCGA-IE-A4EH-01A-11R-A24X-07 KCNMA1~Nchr10~77225281 intergenic "KCNMA1," "-," chr10~chr10 79163620 77225281 8 -- 2.079442 5 2 3 5 10 TCGA-IE-A4EH-01A-11R-A24X-07 MYH11~COL1A1 fusion "MYH11," "COL1A1," chr16~chr17 15812208 48263800 2 -- 0.693147 2 0 2 2 2 TCGA-IE-A4EH-01A-11R-A24X-07 NAPA~PLAC1 fusion "NAPA," "PLAC1," chr19~chrX 48018100 133700770 116 -- 3.028572 116 59 57 116 274 TCGA-IE-A4EH-01A-11R-A24X-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 58 -+ 2.184514 18 0 18 18 24 TCGA-IE-A4EH-01A-11R-A24X-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 4 -- 1.386294 4 4 0 4 10 TCGA-IE-A4EH-01A-11R-A24X-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 8 ++ 1.906155 8 8 0 8 16 TCGA-IE-A4EH-01A-11R-A24X-07 Nchr6~8438264~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8438264 8784424 4 ++ 1.039721 4 1 3 4 10 TCGA-IE-A4EH-01A-11R-A24X-07 Nchr9~29212920~Nchr9~28947912 intergenic "-," "-," chr9~chr9 29212920 28947912 6 -- 1.56071 3 0 3 3 4 TCGA-IE-A4EH-01A-11R-A24X-07 Nchr9~92470507~RP5-1050E16.2 intergenic "-," "RP5-1050E16.2," chr9~chr9 92470507 92522698 8 ++ 0.974315 8 0 8 8 32 TCGA-IE-A4EH-01A-11R-A24X-07 RAMP1~Nchr2~239479357 intergenic "RAMP1," "-," chr2~chr2 238786004 239479357 2 ++ 0.693147 2 2 0 2 8 TCGA-IE-A4EH-01A-11R-A24X-07 TNS3~HUS1 fusion "TNS3," "HUS1," chr7~chr7 47384353 48018413 2 -- 0.693147 2 1 1 2 8 TCGA-IE-A4EH-01A-11R-A24X-07 TPM4~Nchr8~70042048 intergenic "TPM4," "-," chr19~chr8 16186932 70042048 2 -+ 0.693147 1 0 1 1 16 TCGA-IE-A4EH-01A-11R-A24X-07 XPO4~ATP5SL fusion "XPO4," "ATP5SL," chr13~chr19 21373304 42001335 12 -- 1.820076 12 6 6 12 16 TCGA-HS-A5NA-01A-11R-A26T-07 C15orf57~CBX3 fusion "C15orf57," "CBX3," chr15~chr7 40854971 26241389 4 -+ 1.386294 4 3 1 4 8 TCGA-HS-A5NA-01A-11R-A26T-07 EFEMP1~Nchr2~62768175 intergenic "EFEMP1," "-," chr2~chr2 56144800 62768175 7 -- 1.747868 7 6 1 7 28 TCGA-HS-A5NA-01A-11R-A26T-07 HADHA~Nchr9~114053817 intergenic "HADHA," "-," chr2~chr9 26453060 114053817 6 -+ 1.747868 7 5 1 7 40 TCGA-HS-A5NA-01A-11R-A26T-07 HADHA~Nchr9~114060432 intergenic "HADHA," "-," chr2~chr9 26453060 114060432 7 -+ 1.549826 6 3 3 6 28 TCGA-HS-A5NA-01A-11R-A26T-07 HSPA4L~AC113607.1 fusion "HSPA4L," "AC113607.1," chr4~chr2 128729284 780877 3 +- 0.636514 3 0 3 3 2 TCGA-HS-A5NA-01A-11R-A26T-07 NACA~RP11-511B23.2 fusion "NACA," "RP11-511B23.2," chr12~chr12 57106873 93518025 2 -- 0.693147 2 2 0 2 2 TCGA-HS-A5NA-01A-11R-A26T-07 NBEA~FNDC3A fusion "NBEA," "FNDC3A," chr13~chr13 35806756 49688791 6 ++ 1.56071 6 3 3 6 16 TCGA-HS-A5NA-01A-11R-A26T-07 Nchr13~82264407~Nchr13~82264266 intergenic "-," "-," chr13~chr13 82264407 82264266 2 ++ 0.693147 2 1 1 2 8 TCGA-HS-A5NA-01A-11R-A26T-07 Nchr15~21916043~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21916043 20876597 14 -- 2.044931 13 9 4 13 40 TCGA-HS-A5NA-01A-11R-A26T-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 2 ++ 0.693147 2 0 2 2 12 TCGA-HS-A5NA-01A-11R-A26T-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 7 -+ 1.747868 7 4 3 7 68 TCGA-HS-A5NA-01A-11R-A26T-07 Nchr1~173431463~TNFSF4 intergenic "-," "TNFSF4," chr1~chr1 173431463 173157708 4 -- 1.039721 3 2 1 3 38 TCGA-HS-A5NA-01A-11R-A26T-07 Nchr1~173431463~TNFSF4 intergenic "-," "TNFSF4," chr1~chr1 173431463 173176324 6 -- 1.242453 6 5 1 6 74 TCGA-HS-A5NA-01A-11R-A26T-07 Nchr1~173445771~TNFSF4 intergenic "-," "TNFSF4," chr1~chr1 173445771 173157708 6 -- 1.242453 6 5 1 6 36 TCGA-HS-A5NA-01A-11R-A26T-07 Nchr1~173445771~TNFSF4 intergenic "-," "TNFSF4," chr1~chr1 173445771 173176324 3 -- 0.636514 3 2 1 3 36 TCGA-HS-A5NA-01A-11R-A26T-07 Nchr1~569174~DES intergenic "-," "DES," chr1~chr2 569174 220291284 2 -+ 0.693147 1 1 0 1 8 TCGA-HS-A5NA-01A-11R-A26T-07 Nchr3~100895863~ABI3BP intergenic "-," "ABI3BP," chr3~chr3 100895863 100645325 3 -- 1.098612 3 1 2 3 12 TCGA-HS-A5NA-01A-11R-A26T-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 4 ++ 1.039721 3 3 0 3 4 TCGA-HS-A5NA-01A-11R-A26T-07 Nchr6~8438264~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8438264 8784424 8 ++ 2.079442 7 4 3 7 10 TCGA-HS-A5NA-01A-11R-A26T-07 NchrX~110763888~NchrX~110763756 intergenic "-," "-," chrX~chrX 110763888 110763756 4 ++ 0.693147 4 0 4 4 2 TCGA-HS-A5NA-01A-11R-A26T-07 PAN3~FLT3 fusion "PAN3," "FLT3," chr13~chr13 28713224 28644749 3 +- 1.098612 3 3 0 3 12 TCGA-HS-A5NA-01A-11R-A26T-07 PPM1G~LPAR1 fusion "PPM1G," "LPAR1," chr2~chr9 27609956 113735838 2 -- 0.693147 2 1 1 2 6 TCGA-HS-A5NA-01A-11R-A26T-07 RP11-296O14.3~TNFSF4 fusion "RP11-296O14.3," "TNFSF4," chr1~chr1 173393013 173157708 9 -- 1.098612 8 8 0 8 36 TCGA-HS-A5NA-01A-11R-A26T-07 RP11-335L9.1~Nchr3~177483365 intergenic "RP11-335L9.1," "-," chr3~chr3 177159898 177483365 3 ++ 0.636514 3 0 3 3 18 TCGA-HS-A5NA-01A-11R-A26T-07 RP11-335L9.1~Nchr3~177483365 intergenic "RP11-335L9.1," "-," chr3~chr3 177257281 177483365 2 ++ 0.693147 1 0 1 1 14 TCGA-HS-A5NA-01A-11R-A26T-07 RP11-335L9.1~RP11-91K9.1 fusion "RP11-335L9.1," "RP11-91K9.1," chr3~chr3 177347343 177613401 3 ++ 0.636514 1 0 1 1 8 TCGA-HS-A5NA-01A-11R-A26T-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 6 ++ 1.329661 5 5 0 5 10 TCGA-HS-A5NA-01A-11R-A26T-07 SGOL2~Nchr21~29668196 intergenic "SGOL2," "-," chr2~chr21 201407387 29668196 36 ++ 2.793725 34 24 10 34 94 TCGA-HS-A5NA-01A-11R-A26T-07 WDR75~AC092684.1 fusion "WDR75," "AC092684.1," chr2~chr2 190320170 164915655 8 +- 1.667462 8 3 5 8 22 TCGA-HS-A5NA-01A-11R-A26T-07 WDR75~AC092684.1 fusion "WDR75," "AC092684.1," chr2~chr2 190320170 164918712 6 +- 0.867563 6 1 5 6 14 TCGA-HB-A43Z-01A-11R-A24X-07 BCL2L11~Nchr2~118459986 intergenic "BCL2L11," "-," chr2~chr2 111881716 118459986 3 +- 1.098612 3 2 1 3 4 TCGA-HB-A43Z-01A-11R-A24X-07 BRAF~DENND2A fusion "BRAF," "DENND2A," chr7~chr7 140534409 140219518 19 -- 2.086769 18 6 12 18 72 TCGA-HB-A43Z-01A-11R-A24X-07 DCBLD2~Nchr18~24247725 intergenic "DCBLD2," "-," chr3~chr18 98600384 24247725 32 -+ 2.771238 31 21 9 31 88 TCGA-HB-A43Z-01A-11R-A24X-07 DCBLD2~Nchr18~24268043 intergenic "DCBLD2," "-," chr3~chr18 98600384 24268043 19 -+ 1.894602 22 13 6 22 44 TCGA-HB-A43Z-01A-11R-A24X-07 DGUOK~ACTG2 fusion "DGUOK," "ACTG2," chr2~chr2 74166149 74129487 4 ++ 1.039721 4 0 4 4 2 TCGA-HB-A43Z-01A-11R-A24X-07 FHL2~Nchr2~106070373 intergenic "FHL2," "-," chr2~chr2 106002818 106070373 6 -- 1.011404 6 3 3 6 12 TCGA-HB-A43Z-01A-11R-A24X-07 FRMPD4~NchrX~12359660 intergenic "FRMPD4," "-," chrX~chrX 12157131 12359660 14 ++ 2.441015 8 7 1 8 28 TCGA-HB-A43Z-01A-11R-A24X-07 KCNMA1~Nchr10~78322868 intergenic "KCNMA1," "-," chr10~chr10 79163620 78322868 5 -- 1.332179 2 1 1 2 30 TCGA-HB-A43Z-01A-11R-A24X-07 LAMA4~Nchr6~112612923 intergenic "LAMA4," "-," chr6~chr6 112457325 112612923 3 -- 0.636514 3 1 2 3 10 TCGA-HB-A43Z-01A-11R-A24X-07 LMAN1~Nchr18~26596077 intergenic "LMAN1," "-," chr18~chr18 57020434 26596077 6 -+ 1.56071 5 3 2 5 8 TCGA-HB-A43Z-01A-11R-A24X-07 LMAN1~Nchr18~26665300 intergenic "LMAN1," "-," chr18~chr18 57020434 26665300 17 -+ 2.363921 14 0 14 14 32 TCGA-HB-A43Z-01A-11R-A24X-07 LMTK2~RBFOX3 fusion "LMTK2," "RBFOX3," chr7~chr17 97788737 77465476 34 +- 2.441396 32 21 11 32 372 TCGA-HB-A43Z-01A-11R-A24X-07 MBNL1~Nchr3~190398880 intergenic "MBNL1," "-," chr3~chr3 152018156 190398880 15 +- 2.303488 15 10 5 15 54 TCGA-HB-A43Z-01A-11R-A24X-07 MBNL1~Nchr3~190441041 intergenic "MBNL1," "-," chr3~chr3 152018156 190441041 47 +- 2.733411 49 7 40 49 294 TCGA-HB-A43Z-01A-11R-A24X-07 MBNL1~Nchr3~190441041 intergenic "MBNL1,MBNL1," "-," chr3~chr3 151986881 190441041 2 +- 0.693147 2 0 2 2 14 TCGA-HB-A43Z-01A-11R-A24X-07 NCAM2~Nchr7~155080574 intergenic "NCAM2," "-," chr21~chr7 22370936 155080574 27 +- 2.372304 27 15 12 27 292 TCGA-HB-A43Z-01A-11R-A24X-07 NCAM2~Nchr7~155080577 intergenic "NCAM2," "-," chr21~chr7 22370936 155080577 39 +- 2.634218 34 20 14 34 296 TCGA-HB-A43Z-01A-11R-A24X-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 48 -+ 2.383913 24 0 24 24 52 TCGA-HB-A43Z-01A-11R-A24X-07 Nchr12~95267416~TMCC3 intergenic "-," "TMCC3," chr12~chr12 95267416 94976314 3 -- 1.098612 3 3 0 3 8 TCGA-HB-A43Z-01A-11R-A24X-07 Nchr13~76509067~Nchr13~76841631 intergenic "-," "-," chr13~chr13 76509067 76841631 2 ++ 0.693147 2 0 2 2 18 TCGA-HB-A43Z-01A-11R-A24X-07 Nchr14~58448631~SLC35F4 intergenic "-," "SLC35F4," chr14~chr14 58448631 58060842 3 -- 0.636514 3 2 1 3 16 TCGA-HB-A43Z-01A-11R-A24X-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 5 ++ 1.332179 5 3 2 5 6 TCGA-HB-A43Z-01A-11R-A24X-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 5 ++ 1.609438 5 3 2 5 18 TCGA-HB-A43Z-01A-11R-A24X-07 Nchr16~85404884~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85404884 85682158 4 ++ 0.562335 4 1 3 4 6 TCGA-HB-A43Z-01A-11R-A24X-07 Nchr18~20500725~Nchr18~20284883 intergenic "-," "-," chr18~chr18 20500725 20284883 3 -- 1.098612 2 0 2 2 4 TCGA-HB-A43Z-01A-11R-A24X-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 14 -+ 2.205598 13 9 4 13 94 TCGA-HB-A43Z-01A-11R-A24X-07 Nchr3~114036340~Nchr3~114036450 intergenic "-," "-," chr3~chr3 114036340 114036450 3 -- 0.636514 3 3 0 3 6 TCGA-HB-A43Z-01A-11R-A24X-07 Nchr3~187872040~LPP intergenic "-," "LPP," chr3~chr3 187872040 188123900 5 ++ 1.609438 4 0 4 4 2 TCGA-HB-A43Z-01A-11R-A24X-07 Nchr5~113441478~Nchr5~113696642 intergenic "-," "-," chr5~chr5 113441478 113696642 2 ++ 0.693147 2 1 1 2 20 TCGA-HB-A43Z-01A-11R-A24X-07 Nchr6~8558876~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8558876 8784424 3 ++ 1.098612 1 0 1 1 4 TCGA-HB-A43Z-01A-11R-A24X-07 Nchr7~140912504~Nchr7~141137408 intergenic "-," "-," chr7~chr7 140912504 141137408 6 ++ 1.242453 2 2 0 2 6 TCGA-HB-A43Z-01A-11R-A24X-07 Nchr8~128691459~Nchr8~128433208 intergenic "-," "-," chr8~chr8 128691459 128433208 5 -- 1.332179 4 4 0 4 12 TCGA-HB-A43Z-01A-11R-A24X-07 Nchr9~35971960~Nchr9~35972158 intergenic "-," "-," chr9~chr9 35971960 35972158 2 -- 0.693147 2 0 2 2 4 TCGA-HB-A43Z-01A-11R-A24X-07 NchrX~124319492~ODZ1 intergenic "-," "ODZ1," chrX~chrX 124319492 124097666 3 -- 0.636514 3 1 2 3 18 TCGA-HB-A43Z-01A-11R-A24X-07 PARD6B~RP4-530I15.6 fusion "PARD6B," "RP4-530I15.6," chr20~chr20 49366377 49262235 17 ++ 2.037405 20 8 9 20 68 TCGA-HB-A43Z-01A-11R-A24X-07 RP1-34H18.1~NAV3 fusion "RP1-34H18.1," "NAV3," chr12~chr12 77966046 78334099 6 ++ 1.56071 6 1 5 6 8 TCGA-HB-A43Z-01A-11R-A24X-07 RP11-123O10.4~GRIP1 fusion "RP11-123O10.4," "GRIP1," chr12~chr12 67462830 66990707 11 -- 2.019815 7 0 7 7 24 TCGA-HB-A43Z-01A-11R-A24X-07 RPL5~Nchr1~99473991 intergenic "RPL5," "-," chr1~chr1 93307360 99473991 3 -- 0.636514 2 0 2 2 10 TCGA-HB-A43Z-01A-11R-A24X-07 RUNDC1~Nchr18~7544210 intergenic "RUNDC1," "-," chr17~chr18 41141556 7544210 5 ++ 1.332179 5 4 1 5 18 TCGA-HB-A43Z-01A-11R-A24X-07 SLC8A1~SRSF7 fusion "SLC8A1," "SRSF7," chr2~chr2 40655613 38977336 7 -- 1.94591 7 2 5 7 10 TCGA-HB-A43Z-01A-11R-A24X-07 TBCD~HLCS fusion "TBCD," "HLCS," chr17~chr21 80888519 38139586 35 +- 2.636307 33 22 11 33 176 TCGA-HB-A43Z-01A-11R-A24X-07 VDAC2~C10orf11 fusion "VDAC2," "C10orf11," chr10~chr10 76973828 77555965 73 ++ 2.7479 16 10 6 16 10 TCGA-HB-A43Z-01A-11R-A24X-07 VDAC2~C10orf11 fusion "VDAC2," "C10orf11," chr10~chr10 76973828 77795766 10 ++ 1.504788 5 3 2 5 48 TCGA-HS-A5N8-01A-11R-A26T-07 ADAM23~Nchr9~18303618 intergenic "ADAM23," "-," chr2~chr9 207346032 18303618 8 +- 1.213008 7 4 3 7 32 TCGA-HS-A5N8-01A-11R-A26T-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 3 +- 1.098612 3 2 1 3 22 TCGA-HS-A5N8-01A-11R-A26T-07 FAM168A~SYT12 fusion "FAM168A," "SYT12," chr11~chr11 73122439 66807282 8 -+ 1.667462 8 7 1 8 22 TCGA-HS-A5N8-01A-11R-A26T-07 MYST4~KIAA1267 fusion "MYST4," "KIAA1267," chr10~chr17 76603236 44111648 3 +- 1.098612 3 2 1 3 54 TCGA-HS-A5N8-01A-11R-A26T-07 MYST4~KIAA1267 fusion "MYST4," "KIAA1267," chr10~chr17 76603236 44111651 15 +- 2.083766 15 10 5 15 56 TCGA-HS-A5N8-01A-11R-A26T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 93 -+ 2.395884 39 0 39 39 30 TCGA-HS-A5N8-01A-11R-A26T-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151282 4 -- 1.386294 4 1 3 4 10 TCGA-HS-A5N8-01A-11R-A26T-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 5 -- 1.332179 3 0 3 3 10 TCGA-HS-A5N8-01A-11R-A26T-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 37 -+ 2.557356 35 16 19 35 100 TCGA-HS-A5N8-01A-11R-A26T-07 RAP1GDS1~Nchr4~99594386 intergenic "RAP1GDS1,RP11-323J4.1," "-," chr4~chr4 99182720 99594386 2 ++ 0.693147 2 0 2 2 42 TCGA-HS-A5N8-01A-11R-A26T-07 RAP1GDS1~Nchr4~99594415 intergenic "RAP1GDS1,RP11-323J4.1," "-," chr4~chr4 99182720 99594415 4 ++ 1.039721 4 1 3 4 42 TCGA-HS-A5N8-01A-11R-A26T-07 RBM39~RP3-477O4.5 fusion "RBM39," "RP3-477O4.5," chr20~chr20 34312492 34108971 8 -- 0.661563 8 5 3 8 4 TCGA-HS-A5N8-01A-11R-A26T-07 USP24~Nchr8~129322621 intergenic "USP24," "-," chr1~chr8 55538459 129322621 29 -+ 2.578075 24 12 12 24 106 TCGA-HS-A5N8-01A-11R-A26T-07 ZFAND6~Nchr15~74061811 intergenic "ZFAND6," "-," chr15~chr15 80352151 74061811 10 ++ 1.220607 10 5 5 10 8 TCGA-DX-A3LY-01B-11R-A27Q-07 ANKRD52~RP11-362K2.2 fusion "ANKRD52," "RP11-362K2.2," chr12~chr12 56638137 59199723 12 -+ 1.86368 12 7 5 12 24 TCGA-DX-A3LY-01B-11R-A27Q-07 ANKRD52~RP11-362K2.2 fusion "ANKRD52," "RP11-362K2.2," chr12~chr12 56638137 59206196 11 -+ 1.46814 11 5 6 11 24 TCGA-DX-A3LY-01B-11R-A27Q-07 ANO2~Nchr12~10516474 intergenic "ANO2," "-," chr12~chr12 5708650 10516474 9 -+ 1.427061 6 3 3 6 30 TCGA-DX-A3LY-01B-11R-A27Q-07 ANO2~RP11-366L20.4 fusion "ANO2," "RP11-366L20.4," chr12~chr12 6054362 66422479 2 -- 0.693147 2 1 1 2 8 TCGA-DX-A3LY-01B-11R-A27Q-07 ARHGAP4~TBC1D30 fusion "NAA10,ARHGAP4,NAA10," "TBC1D30," chrX~chr12 153200337 65258448 5 -+ 1.332179 5 5 0 5 26 TCGA-DX-A3LY-01B-11R-A27Q-07 ARHGAP4~TBC1D30 fusion "NAA10,ARHGAP4,NAA10," "TBC1D30," chrX~chr12 153199830 65258448 4 -+ 1.386294 3 2 1 3 38 TCGA-DX-A3LY-01B-11R-A27Q-07 C9orf95~Nchr4~36926452 intergenic "C9orf95," "-," chr9~chr4 77681673 36926452 5 -- 1.05492 1 0 1 1 6 TCGA-DX-A3LY-01B-11R-A27Q-07 CBX5~Nchr12~54594244 intergenic "CBX5," "-," chr12~chr12 54647883 54594244 5 -+ 0.673012 5 2 3 5 460 TCGA-DX-A3LY-01B-11R-A27Q-07 CBX5~Nchr12~54594244 intergenic "CBX5," "-," chr12~chr12 54651298 54594244 237 -+ 2.932692 218 136 80 218 480 TCGA-DX-A3LY-01B-11R-A27Q-07 CBX5~Nchr12~54605316 intergenic "CBX5," "-," chr12~chr12 54651298 54605316 208 -+ 2.998868 178 73 104 178 356 TCGA-DX-A3LY-01B-11R-A27Q-07 CD55~RGS21 fusion "CD55," "RGS21," chr1~chr1 207512762 192335051 7 ++ 1.004242 7 3 4 7 74 TCGA-DX-A3LY-01B-11R-A27Q-07 CPSF6~GFPT2 fusion "CPSF6," "GFPT2," chr12~chr5 69656342 179728029 2 +- 0.693147 2 0 2 2 30 TCGA-DX-A3LY-01B-11R-A27Q-07 DCTN2~SRGAP1 fusion "DCTN2," "SRGAP1," chr12~chr12 57940811 64377727 457 -+ 2.996734 440 220 220 440 2242 TCGA-DX-A3LY-01B-11R-A27Q-07 DCTN2~SRGAP1 fusion "DCTN2," "SRGAP1," chr12~chr12 57939811 64377727 150 -+ 3.002579 147 72 75 147 2402 TCGA-DX-A3LY-01B-11R-A27Q-07 DDX46~TPO fusion "DDX46," "TPO," chr5~chr2 134113415 1543325 4 ++ 0.562335 4 4 0 4 36 TCGA-DX-A3LY-01B-11R-A27Q-07 DDX46~TPO fusion "DDX46," "TPO," chr5~chr2 134113415 1546193 14 ++ 1.908535 12 3 9 12 70 TCGA-DX-A3LY-01B-11R-A27Q-07 DGKD~NDUFA10 fusion "DGKD,AC019221.4," "NDUFA10," chr2~chr2 234299129 240961757 7 +- 1.351784 7 5 2 7 44 TCGA-DX-A3LY-01B-11R-A27Q-07 DKC1~Nchr12~127722108 intergenic "DKC1," "-," chrX~chr12 154005121 127722108 18 +- 2.245172 15 6 9 15 34 TCGA-DX-A3LY-01B-11R-A27Q-07 DYRK2~Nchr5~180168581 intergenic "DYRK2," "-," chr12~chr5 68051273 180168581 110 ++ 2.827737 112 39 70 112 174 TCGA-DX-A3LY-01B-11R-A27Q-07 ESYT1~Nchr8~13966139 intergenic "ZC3H10,RP11-603J24.6,ZC3H10,ESYT1,ZC3H10," "-," chr12~chr8 56512935 13966139 5 ++ 0.500402 5 4 1 5 134 TCGA-DX-A3LY-01B-11R-A27Q-07 ESYT1~Nchr8~13969556 intergenic "ZC3H10,RP11-603J24.6,ZC3H10,ESYT1,ZC3H10," "-," chr12~chr8 56512935 13969556 49 ++ 2.339926 43 5 38 43 134 TCGA-DX-A3LY-01B-11R-A27Q-07 EXOC4~Nchr7~153225473 intergenic "EXOC4," "-," chr7~chr7 133059756 153225473 3 ++ 0.636514 3 3 0 3 10 TCGA-DX-A3LY-01B-11R-A27Q-07 FRS2~Nchr12~65297690 intergenic "FRS2," "-," chr12~chr12 69925836 65297690 26 +- 2.307646 2 0 2 2 8 TCGA-DX-A3LY-01B-11R-A27Q-07 FRS2~Nchr12~77706010 intergenic "FRS2," "-," chr12~chr12 69925836 77706010 3 +- 1.098612 2 1 1 2 6 TCGA-DX-A3LY-01B-11R-A27Q-07 FRS2~Nchr12~77724262 intergenic "FRS2," "-," chr12~chr12 69925836 77724262 42 +- 2.740706 29 10 17 29 122 TCGA-DX-A3LY-01B-11R-A27Q-07 FRS2~Nchr12~77731832 intergenic "FRS2," "-," chr12~chr12 69925836 77731832 3 +- 0.636514 3 0 3 3 116 TCGA-DX-A3LY-01B-11R-A27Q-07 FXR1~Nchr12~127642014 intergenic "FXR1," "-," chr3~chr12 180675716 127642014 63 ++ 3.234305 60 25 35 60 248 TCGA-DX-A3LY-01B-11R-A27Q-07 FXR1~Nchr12~127649797 intergenic "FXR1," "-," chr3~chr12 180675716 127649797 8 ++ 1.320888 4 2 2 4 48 TCGA-DX-A3LY-01B-11R-A27Q-07 GFPT2~Nchr20~3052213 intergenic "GFPT2," "-," chr5~chr20 179780211 3052213 249 -+ 2.890458 238 176 56 238 778 TCGA-DX-A3LY-01B-11R-A27Q-07 HDX~ERICH1 fusion "HDX," "ERICH1," chrX~chr8 83757350 614676 7 -- 1.351784 7 7 0 7 16 TCGA-DX-A3LY-01B-11R-A27Q-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 208 -- 2.686417 208 208 0 208 188 TCGA-DX-A3LY-01B-11R-A27Q-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32487941 32548633 51 -- 2.159808 10 1 9 10 32 TCGA-DX-A3LY-01B-11R-A27Q-07 LRIG3~Nchr12~62089798 intergenic "LRIG3," "-," chr12~chr12 59307763 62089798 546 -+ 3.253833 538 279 221 538 1918 TCGA-DX-A3LY-01B-11R-A27Q-07 LRIG3~Nchr12~62092119 intergenic "LRIG3," "-," chr12~chr12 59307763 62092119 103 -+ 2.761939 95 37 54 95 2076 TCGA-DX-A3LY-01B-11R-A27Q-07 LRIG3~Nchr12~62093045 intergenic "LRIG3," "-," chr12~chr12 59307763 62093045 93 -+ 2.798129 89 34 55 89 1866 TCGA-DX-A3LY-01B-11R-A27Q-07 LRIG3~Nchr12~67300036 intergenic "LRIG3," "-," chr12~chr12 59307763 67300036 10 -- 1.0889 6 6 0 6 16 TCGA-DX-A3LY-01B-11R-A27Q-07 LRIG3~Nchr12~67328313 intergenic "LRIG3," "-," chr12~chr12 59307763 67328313 7 -- 1.351784 3 3 0 3 24 TCGA-DX-A3LY-01B-11R-A27Q-07 LRIG3~Nchr12~67357945 intergenic "LRIG3," "-," chr12~chr12 59307763 67357945 32 -- 2.587836 17 12 5 17 112 TCGA-DX-A3LY-01B-11R-A27Q-07 LRIG3~Nchr12~67386719 intergenic "LRIG3," "-," chr12~chr12 59307763 67386719 127 -- 2.164664 82 70 12 82 488 TCGA-DX-A3LY-01B-11R-A27Q-07 LRIG3~Nchr12~67386866 intergenic "LRIG3," "-," chr12~chr12 59307763 67386866 2 -- 0.693147 2 2 0 2 2 TCGA-DX-A3LY-01B-11R-A27Q-07 LRIG3~Nchr12~77462306 intergenic "LRIG3," "-," chr12~chr12 59307763 77462306 5 -- 1.05492 3 1 2 3 16 TCGA-DX-A3LY-01B-11R-A27Q-07 LRIG3~Nchr12~77464014 intergenic "LRIG3," "-," chr12~chr12 59307763 77464014 8 -- 1.559581 8 6 2 8 18 TCGA-DX-A3LY-01B-11R-A27Q-07 MARK1~Nchr1~221670638 intergenic "MARK1," "-," chr1~chr1 220832771 221670638 14 -- 1.574097 12 0 12 12 8 TCGA-DX-A3LY-01B-11R-A27Q-07 MDM1~RP11-362K2.2 fusion "MDM1," "RP11-362K2.2," chr12~chr12 68715127 59145087 4 -+ 0.693147 4 0 4 4 28 TCGA-DX-A3LY-01B-11R-A27Q-07 MECP2~Nchr5~180116413 intergenic "MECP2," "-," chrX~chr5 153357642 180116413 90 -- 2.535531 88 27 59 88 350 TCGA-DX-A3LY-01B-11R-A27Q-07 MECP2~Nchr5~180116413 intergenic "MECP2," "-," chrX~chr5 153363061 180116413 9 -- 1.427061 9 7 2 9 90 TCGA-DX-A3LY-01B-11R-A27Q-07 MKRN1~Nchr7~141550637 intergenic "MKRN1," "-," chr7~chr7 140154244 141550637 2 -+ 0.693147 2 2 0 2 124 TCGA-DX-A3LY-01B-11R-A27Q-07 MTMR10~ATR fusion "FAN1,MTMR10," "ATR," chr15~chr3 31235093 142274050 115 -- 2.733914 70 70 0 70 32 TCGA-DX-A3LY-01B-11R-A27Q-07 NTRK1~DYNC2H1 fusion "NTRK1," "DYNC2H1," chr1~chr11 156849949 103306671 5 ++ 0.950271 5 5 0 5 16 TCGA-DX-A3LY-01B-11R-A27Q-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 131 -+ 2.281421 63 0 63 63 68 TCGA-DX-A3LY-01B-11R-A27Q-07 Nchr12~127721946~PLCB1 intergenic "-," "PLCB1," chr12~chr20 127721946 8352029 5 -+ 1.05492 3 0 3 3 10 TCGA-DX-A3LY-01B-11R-A27Q-07 Nchr12~54605487~SRGAP1 intergenic "-," "SRGAP1,RP11-196H14.2," chr12~chr12 54605487 64436720 8 +- 1.667462 6 0 6 6 30 TCGA-DX-A3LY-01B-11R-A27Q-07 Nchr12~58702885~Nchr12~58679941 intergenic "-," "-," chr12~chr12 58702885 58679941 6 -+ 1.011404 2 2 0 2 8 TCGA-DX-A3LY-01B-11R-A27Q-07 Nchr12~58844253~SRGAP1 intergenic "-," "SRGAP1," chr12~chr12 58844253 64379744 19 -- 2.055586 6 0 6 6 42 TCGA-DX-A3LY-01B-11R-A27Q-07 Nchr12~64322508~MUCL1 intergenic "-," "MUCL1," chr12~chr12 64322508 55248900 7 -+ 0.682908 7 7 0 7 42 TCGA-DX-A3LY-01B-11R-A27Q-07 Nchr12~64339810~MUCL1 intergenic "-," "MUCL1," chr12~chr12 64339810 55248900 13 -+ 1.265857 9 4 5 9 14 TCGA-DX-A3LY-01B-11R-A27Q-07 Nchr12~65297595~Nchr12~77724262 intergenic "-," "-," chr12~chr12 65297595 77724262 20 -- 2.220637 11 1 10 11 32 TCGA-DX-A3LY-01B-11R-A27Q-07 Nchr12~67328227~Nchr12~62089798 intergenic "-," "-," chr12~chr12 67328227 62089798 9 -+ 1.427061 4 4 0 4 16 TCGA-DX-A3LY-01B-11R-A27Q-07 Nchr12~67357818~Nchr12~62089798 intergenic "-," "-," chr12~chr12 67357818 62089798 8 -+ 1.494175 7 7 0 7 98 TCGA-DX-A3LY-01B-11R-A27Q-07 Nchr12~67357818~Nchr12~62092119 intergenic "-," "-," chr12~chr12 67357818 62092119 17 -+ 1.801951 14 13 0 14 94 TCGA-DX-A3LY-01B-11R-A27Q-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 6 ++ 1.011404 5 2 3 5 18 TCGA-DX-A3LY-01B-11R-A27Q-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 48 -+ 2.740784 44 25 19 44 484 TCGA-DX-A3LY-01B-11R-A27Q-07 Nchr7~131584181~Nchr7~124084152 intergenic "-," "-," chr7~chr7 131584181 124084152 15 +- 1.547287 15 7 8 15 32 TCGA-DX-A3LY-01B-11R-A27Q-07 Nchr9~33624508~Nchr9~33624745 intergenic "-," "-," chr9~chr9 33624508 33624745 3 -- 0.636514 1 1 0 1 36 TCGA-DX-A3LY-01B-11R-A27Q-07 OSBPL8~Nchr12~58804404 intergenic "OSBPL8," "-," chr12~chr12 76844631 58804404 10 -- 1.695743 7 6 1 7 102 TCGA-DX-A3LY-01B-11R-A27Q-07 OSBPL8~Nchr12~58816253 intergenic "OSBPL8," "-," chr12~chr12 76844631 58816253 21 -- 1.819322 21 11 10 21 74 TCGA-DX-A3LY-01B-11R-A27Q-07 OSBPL8~Nchr12~58834173 intergenic "OSBPL8," "-," chr12~chr12 76844631 58834173 4 -- 0.693147 4 2 2 4 6 TCGA-DX-A3LY-01B-11R-A27Q-07 OSBPL8~Nchr12~58836202 intergenic "OSBPL8," "-," chr12~chr12 76844631 58836202 7 -- 0.59827 7 0 7 7 42 TCGA-DX-A3LY-01B-11R-A27Q-07 OSBPL8~Nchr12~58844357 intergenic "OSBPL8," "-," chr12~chr12 76844631 58844357 127 -- 3.015563 110 46 64 110 478 TCGA-DX-A3LY-01B-11R-A27Q-07 OSBPL8~ZDHHC17 fusion "OSBPL8," "ZDHHC17," chr12~chr12 76953177 77199097 5 -+ 1.05492 5 2 3 5 16 TCGA-DX-A3LY-01B-11R-A27Q-07 PA2G4~MARK1 fusion "PA2G4,PA2G4," "MARK1," chr12~chr1 56498609 220752696 36 ++ 2.281644 36 31 5 36 94 TCGA-DX-A3LY-01B-11R-A27Q-07 PTGS2~GLRX2 fusion "PTGS2," "GLRX2," chr1~chr1 186649371 193070334 2 -- 0.693147 2 0 2 2 6 TCGA-DX-A3LY-01B-11R-A27Q-07 R3HDM2~Nchr12~58702970 intergenic "R3HDM2," "-," chr12~chr12 57789532 58702970 7 -- 1.004242 5 0 5 5 8 TCGA-DX-A3LY-01B-11R-A27Q-07 R3HDM2~Nchr12~70382535 intergenic "R3HDM2," "-," chr12~chr12 57789532 70382535 11 -+ 1.389681 11 0 11 11 276 TCGA-DX-A3LY-01B-11R-A27Q-07 R3HDM2~Nchr12~70385487 intergenic "R3HDM2," "-," chr12~chr12 57789532 70385487 72 -+ 2.835556 84 6 64 84 240 TCGA-DX-A3LY-01B-11R-A27Q-07 R3HDM2~Nchr12~70385490 intergenic "R3HDM2," "-," chr12~chr12 57789532 70385490 17 -+ 1.382343 18 0 17 18 238 TCGA-DX-A3LY-01B-11R-A27Q-07 R3HDM2~Nchr12~70389872 intergenic "R3HDM2," "-," chr12~chr12 57789532 70389872 31 -+ 2.064214 31 14 17 31 42 TCGA-DX-A3LY-01B-11R-A27Q-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 20 +- 1.430562 18 0 18 18 6 TCGA-DX-A3LY-01B-11R-A27Q-07 RUNX1~Nchr5~119179439 intergenic "RUNX1," "-," chr21~chr5 36206707 119179439 9 -- 1.522955 9 5 4 9 46 TCGA-DX-A3LY-01B-11R-A27Q-07 RUNX1~Nchr5~119187433 intergenic "RUNX1," "-," chr21~chr5 36206707 119187433 12 -- 1.660947 11 8 3 11 24 TCGA-DX-A3LY-01B-11R-A27Q-07 SH3RF2~RP11-81H14.2 fusion "SH3RF2," "RP11-81H14.2," chr5~chr12 145317869 68727444 21 +- 2.04228 21 10 11 21 70 TCGA-DX-A3LY-01B-11R-A27Q-07 SMC6~Nchr2~19086238 intergenic "SMC6," "-," chr2~chr2 17927094 19086238 11 -- 1.546599 10 0 10 10 24 TCGA-DX-A3LY-01B-11R-A27Q-07 SPAST~Nchr7~124091153 intergenic "SPAST," "-," chr2~chr7 32323960 124091153 12 ++ 1.632631 12 8 4 12 36 TCGA-DX-A3LY-01B-11R-A27Q-07 SRGAP1~Nchr12~54667397 intergenic "SRGAP1," "-," chr12~chr12 64437355 54667397 210 ++ 2.790927 202 42 160 202 704 TCGA-DX-A3LY-01B-11R-A27Q-07 SRGAP1~RP11-968A15.2 fusion "SRGAP1," "RP11-968A15.2," chr12~chr12 64437355 54672602 6 ++ 0.693147 5 4 1 5 4 TCGA-DX-A3LY-01B-11R-A27Q-07 STK40~OSCP1 fusion "STK40," "OSCP1," chr1~chr1 36851324 36904511 16 -- 1.541976 15 7 8 15 8 TCGA-DX-A3LY-01B-11R-A27Q-07 TAF1B~Nchr2~2724174 intergenic "TAF1B," "-," chr2~chr2 9994550 2724174 46 +- 2.171305 44 11 33 44 62 TCGA-DX-A3LY-01B-11R-A27Q-07 TAF1B~Nchr2~2724345 intergenic "TAF1B," "-," chr2~chr2 9994550 2724345 32 +- 2.053031 31 11 20 31 98 TCGA-DX-A3LY-01B-11R-A27Q-07 TBC1D14~Nchr1~221773685 intergenic "TBC1D14," "-," chr4~chr1 6969151 221773685 8 +- 1.732868 4 2 2 4 8 TCGA-DX-A3LY-01B-11R-A27Q-07 TBC1D14~Nchr1~221773685 intergenic "TBC1D14," "-," chr4~chr1 6989076 221773685 135 +- 2.815451 130 117 13 130 242 TCGA-DX-A3LY-01B-11R-A27Q-07 TBC1D30~Nchr12~77724262 intergenic "TBC1D30," "-," chr12~chr12 65264296 77724262 7 -- 1.277034 3 0 3 3 14 TCGA-DX-A3LY-01B-11R-A27Q-07 TBX22~Nchr1~238362043 intergenic "TBX22," "-," chrX~chr1 79278185 238362043 3 -- 0.636514 3 2 1 3 4 TCGA-DX-A3LY-01B-11R-A27Q-07 TBX22~Nchr1~238362932 intergenic "TBX22," "-," chrX~chr1 79278185 238362932 2 -- 0.693147 2 1 1 2 2 TCGA-DX-A3LY-01B-11R-A27Q-07 TMLHE~Nchr1~221647232 intergenic "TMLHE," "-," chrX~chr1 154842453 221647232 3 -- 0.636514 3 3 0 3 8 TCGA-DX-A3LY-01B-11R-A27Q-07 TMLHE~Nchr1~221665668 intergenic "TMLHE," "-," chrX~chr1 154842453 221665668 14 -- 1.46806 14 13 1 14 108 TCGA-DX-A3LY-01B-11R-A27Q-07 TMLHE~Nchr1~221670638 intergenic "TMLHE," "-," chrX~chr1 154842453 221670638 29 -- 2.250395 27 22 5 27 296 TCGA-DX-A3LY-01B-11R-A27Q-07 TMX4~NchrX~82311557 intergenic "TMX4," "-," chr20~chrX 7976673 82311557 7 -- 0.59827 7 5 2 7 26 TCGA-DX-A3LY-01B-11R-A27Q-07 USP12~NXF3 fusion "USP12," "NXF3," chr13~chrX 27664020 102339423 7 -- 1.475076 7 5 2 7 12 TCGA-DX-A3LY-01B-11R-A27Q-07 USP28~Nchr11~119913991 intergenic "USP28," "-," chr11~chr11 113711320 119913991 23 -- 1.730238 23 13 10 23 54 TCGA-DX-A3LY-01B-11R-A27Q-07 VBP1~IL22 fusion "VBP1," "IL22," chrX~chr12 154444852 68647274 6 +- 1.011404 3 3 0 3 12 TCGA-DX-A3LY-01B-11R-A27Q-07 WDFY2~DLGAP2 fusion "WDFY2," "RP11-666I19.2,DLGAP2," chr13~chr8 52301926 1513904 15 +- 1.968693 15 8 7 15 82 TCGA-DX-A3LY-01B-11R-A27Q-07 WDFY2~Nchr8~1518155 intergenic "WDFY2," "-," chr13~chr8 52301926 1518155 94 +- 2.764711 90 28 62 90 262 TCGA-DX-A23Z-01A-11R-A27Q-07 ADK~Nchr2~65432218 intergenic "ADK," "-," chr10~chr2 75960596 65432218 9 ++ 1.310784 8 2 6 8 42 TCGA-DX-A23Z-01A-11R-A27Q-07 ADK~Nchr6~154678574 intergenic "ADK," "-," chr10~chr6 75960596 154678574 41 ++ 2.058906 28 17 11 28 1424 TCGA-DX-A23Z-01A-11R-A27Q-07 ADK~Nchr6~154679246 intergenic "ADK," "-," chr10~chr6 75960596 154679246 460 ++ 3.034031 438 236 202 438 2080 TCGA-DX-A23Z-01A-11R-A27Q-07 AP3M1~Nchr11~106120596 intergenic "AP3M1," "-," chr10~chr11 75910513 106120596 7 -+ 1.351784 7 0 7 7 24 TCGA-DX-A23Z-01A-11R-A27Q-07 ARFGEF1~CCDC94 fusion "ARFGEF1," "CCDC94," chr8~chr19 68123718 4261991 12 -+ 1.517106 11 10 1 11 20 TCGA-DX-A23Z-01A-11R-A27Q-07 ATAD2~Nchr11~59227775 intergenic "ATAD2," "-," chr8~chr11 124408427 59227775 112 -+ 3.006523 102 89 13 102 290 TCGA-DX-A23Z-01A-11R-A27Q-07 ATAD2~Nchr11~59239964 intergenic "ATAD2," "-," chr8~chr11 124408427 59239964 33 -+ 2.218163 32 22 10 32 138 TCGA-DX-A23Z-01A-11R-A27Q-07 C12orf51~YAP1 fusion "C12orf51," "YAP1," chr12~chr11 112819756 102076624 8 -+ 1.559581 8 7 1 8 20 TCGA-DX-A23Z-01A-11R-A27Q-07 C9orf119~ATG16L2 fusion "C9orf119," "ATG16L2," chr9~chr11 131048312 72553662 14 ++ 1.630799 14 11 3 14 68 TCGA-DX-A23Z-01A-11R-A27Q-07 C9orf119~Nchr12~58653423 intergenic "C9orf119," "-," chr9~chr12 131046910 58653423 131 +- 2.899986 109 57 52 109 266 TCGA-DX-A23Z-01A-11R-A27Q-07 CCT2~Nchr12~67331197 intergenic "CCT2," "-," chr12~chr12 69987393 67331197 13 +- 1.412745 13 3 10 13 40 TCGA-DX-A23Z-01A-11R-A27Q-07 CCT2~Nchr12~67344725 intergenic "CCT2," "-," chr12~chr12 69987393 67344725 174 +- 2.849378 163 88 75 163 804 TCGA-DX-A23Z-01A-11R-A27Q-07 CCT2~Nchr12~67344738 intergenic "CCT2," "-," chr12~chr12 69987393 67344738 49 +- 2.501921 47 26 21 47 884 TCGA-DX-A23Z-01A-11R-A27Q-07 CHORDC1~Nchr6~149025791 intergenic "CHORDC1," "-," chr11~chr6 89951303 149025791 30 -- 1.69955 30 18 12 30 112 TCGA-DX-A23Z-01A-11R-A27Q-07 CHORDC1~Nchr6~149025791 intergenic "CHORDC1," "-," chr11~chr6 89948342 149025791 8 -- 1.559581 7 5 2 7 174 TCGA-DX-A23Z-01A-11R-A27Q-07 CHORDC1~Nchr6~149025791 intergenic "CHORDC1," "-," chr11~chr6 89947186 149025791 300 -- 3.125052 277 127 147 277 654 TCGA-DX-A23Z-01A-11R-A27Q-07 CIZ1~C9orf119 fusion "CIZ1," "C9orf119," chr9~chr9 130947826 131046789 21 -+ 1.594982 21 15 6 21 96 TCGA-DX-A23Z-01A-11R-A27Q-07 CIZ1~DBH fusion "CIZ1," "NCRNA00118,DBH," chr9~chr9 130947826 136521659 75 -- 2.557553 72 52 20 72 124 TCGA-DX-A23Z-01A-11R-A27Q-07 CIZ1~NCRNA00118 fusion "CIZ1," "NCRNA00118," chr9~chr9 130947826 136522356 4 -- 0.562335 4 4 0 4 28 TCGA-DX-A23Z-01A-11R-A27Q-07 CIZ1~Nchr9~136522499 intergenic "CIZ1," "-," chr9~chr9 130947826 136522499 20 -- 1.846451 20 5 15 20 60 TCGA-DX-A23Z-01A-11R-A27Q-07 CIZ1~Nchr9~136527362 intergenic "CIZ1," "-," chr9~chr9 130947826 136527362 191 -- 2.98172 188 121 62 188 812 TCGA-DX-A23Z-01A-11R-A27Q-07 CLASP1~Nchr11~101704590 intergenic "CLASP1," "-," chr2~chr11 122187649 101704590 7 -+ 1.475076 5 0 5 5 4 TCGA-DX-A23Z-01A-11R-A27Q-07 CTDSP2~FRS2 fusion "CTDSP2," "FRS2," chr12~chr12 58240155 69924645 21 -+ 1.591686 7 3 4 7 12 TCGA-DX-A23Z-01A-11R-A27Q-07 CTDSP2~Nchr12~64491438 intergenic "CTDSP2," "-," chr12~chr12 58240155 64491438 16 -- 1.808046 9 0 9 9 68 TCGA-DX-A23Z-01A-11R-A27Q-07 CTDSP2~SRGAP1 fusion "CTDSP2," "SRGAP1,RP11-196H14.2," chr12~chr12 58240155 64436720 27 -- 2.191434 26 2 24 26 42 TCGA-DX-A23Z-01A-11R-A27Q-07 CUL3~Nchr2~207768092 intergenic "CUL3," "-," chr2~chr2 225346609 207768092 30 -- 2.043301 26 16 10 26 104 TCGA-DX-A23Z-01A-11R-A27Q-07 DIXDC1~Nchr11~49110661 intergenic "DIXDC1," "-," chr11~chr11 111864464 49110661 13 +- 1.697734 11 0 11 11 38 TCGA-DX-A23Z-01A-11R-A27Q-07 DIXDC1~Nchr11~89468914 intergenic "DIXDC1," "-," chr11~chr11 111864464 89468914 146 ++ 2.607825 144 48 96 144 774 TCGA-DX-A23Z-01A-11R-A27Q-07 DIXDC1~Nchr11~89469011 intergenic "DIXDC1," "-," chr11~chr11 111864464 89469011 79 ++ 2.713204 79 30 49 79 400 TCGA-DX-A23Z-01A-11R-A27Q-07 DIXDC1~Nchr11~89473917 intergenic "DIXDC1," "-," chr11~chr11 111864464 89473917 1 ++ 0 1 1 0 1 114 TCGA-DX-A23Z-01A-11R-A27Q-07 DIXDC1~Nchr11~89473917 intergenic "DIXDC1," "-," chr11~chr11 111864312 89473917 24 ++ 1.990479 24 16 8 24 74 TCGA-DX-A23Z-01A-11R-A27Q-07 FNDC1~Nchr12~68566074 intergenic "FNDC1," "-," chr6~chr12 159677663 68566074 5 ++ 0.673012 5 3 2 5 56 TCGA-DX-A23Z-01A-11R-A27Q-07 GOLGA2~Nchr12~68243651 intergenic "GOLGA2," "-," chr9~chr12 131038172 68243651 2 -- 0.693147 1 1 0 1 38 TCGA-DX-A23Z-01A-11R-A27Q-07 GOLGA2~Nchr12~68267405 intergenic "GOLGA2," "-," chr9~chr12 131038172 68267405 89 -- 2.69367 75 75 0 75 100 TCGA-DX-A23Z-01A-11R-A27Q-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 364 -- 2.464586 246 28 215 246 62 TCGA-DX-A23Z-01A-11R-A27Q-07 LRRC67~Nchr12~58856070 intergenic "COPS5,LRRC67,COPS5," "-," chr8~chr12 67968754 58856070 10 -- 1.366159 8 5 3 8 58 TCGA-DX-A23Z-01A-11R-A27Q-07 MARCH9~Nchr12~67814937 intergenic "MARCH9," "-," chr12~chr12 58150867 67814937 124 ++ 2.785307 120 36 84 120 326 TCGA-DX-A23Z-01A-11R-A27Q-07 MARCH9~Nchr12~67814937 intergenic "MARCH9," "-," chr12~chr12 58152083 67814937 115 ++ 2.918405 102 48 54 102 382 TCGA-DX-A23Z-01A-11R-A27Q-07 MMP7~Nchr11~123923717 intergenic "MMP7," "-," chr11~chr11 102393971 123923717 125 -- 2.866038 124 57 67 124 490 TCGA-DX-A23Z-01A-11R-A27Q-07 MMP7~Nchr11~123923717 intergenic "MMP7," "-," chr11~chr11 102394085 123923717 3 -- 0.636514 1 0 1 1 268 TCGA-DX-A23Z-01A-11R-A27Q-07 MMP7~Nchr11~123923717 intergenic "MMP7," "-," chr11~chr11 102395667 123923717 35 -- 2.305001 34 28 6 34 226 TCGA-DX-A23Z-01A-11R-A27Q-07 MMP7~Nchr11~123924080 intergenic "MMP7," "-," chr11~chr11 102395667 123924080 40 -- 2.274415 40 24 16 40 138 TCGA-DX-A23Z-01A-11R-A27Q-07 MMP7~Nchr11~123924080 intergenic "MMP7," "-," chr11~chr11 102393971 123924080 33 -- 2.340247 31 15 15 31 260 TCGA-DX-A23Z-01A-11R-A27Q-07 MMP7~Nchr11~123933240 intergenic "MMP7," "-," chr11~chr11 102393971 123933240 2 -- 1.039721 4 0 2 4 202 TCGA-DX-A23Z-01A-11R-A27Q-07 NT5DC1~Nchr11~104214672 intergenic "NT5DC1," "-," chr6~chr11 116439108 104214672 21 +- 1.913548 21 11 10 21 48 TCGA-DX-A23Z-01A-11R-A27Q-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 68 -+ 2.422155 50 0 50 50 46 TCGA-DX-A23Z-01A-11R-A27Q-07 Nchr12~58280311~C11orf61 intergenic "-," "C11orf61," chr12~chr11 58280311 124649035 13 -- 1.603718 16 8 0 16 28 TCGA-DX-A23Z-01A-11R-A27Q-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 13 -+ 1.412745 12 2 10 12 2 TCGA-DX-A23Z-01A-11R-A27Q-07 Nchr9~131102862~DYNC2H1 intergenic "-," "DYNC2H1," chr9~chr11 131102862 103325914 14 ++ 1.232643 14 14 0 14 10 TCGA-DX-A23Z-01A-11R-A27Q-07 Nchr9~131102896~DYNC2H1 intergenic "-," "DYNC2H1," chr9~chr11 131102896 103325914 96 ++ 2.708535 87 85 2 87 80 TCGA-DX-A23Z-01A-11R-A27Q-07 PAAF1~NCR3 fusion "PAAF1," "NCR3," chr11~chr6 73588113 31557676 7 +- 1.351784 7 0 7 7 14 TCGA-DX-A23Z-01A-11R-A27Q-07 PGM2L1~Nchr10~44458256 intergenic "PGM2L1," "-," chr11~chr10 74079537 44458256 18 -- 1.567056 18 14 4 18 56 TCGA-DX-A23Z-01A-11R-A27Q-07 PGM2L1~Nchr10~44467907 intergenic "PGM2L1," "-," chr11~chr10 74079537 44467907 21 -- 1.496697 21 15 6 21 64 TCGA-DX-A23Z-01A-11R-A27Q-07 PGM2L1~Nchr10~44467935 intergenic "PGM2L1," "-," chr11~chr10 74079537 44467935 9 -- 1.368922 9 4 5 9 64 TCGA-DX-A23Z-01A-11R-A27Q-07 PGM2L1~Nchr10~44468029 intergenic "PGM2L1," "-," chr11~chr10 74079537 44468029 15 -- 0.392674 15 2 13 15 80 TCGA-DX-A23Z-01A-11R-A27Q-07 PTPN11~PLAGL1 fusion "PTPN11," "PLAGL1," chr12~chr6 112856929 144290115 19 +- 1.319946 14 0 14 14 14 TCGA-DX-A23Z-01A-11R-A27Q-07 PVRL1~Nchr6~148899445 intergenic "PVRL1," "-," chr11~chr6 119599185 148899445 28 -+ 2.274436 24 0 24 24 64 TCGA-DX-A23Z-01A-11R-A27Q-07 RAB6A~MICA fusion "RAB6A," "MICA," chr11~chr6 73441810 31378320 18 -+ 1.353274 17 8 9 17 70 TCGA-DX-A23Z-01A-11R-A27Q-07 RP11-123O10.4~Nchr11~102172871 intergenic "RP11-123O10.4," "-," chr12~chr11 67462830 102172871 3 -- 1.098612 2 0 2 2 16 TCGA-DX-A23Z-01A-11R-A27Q-07 RP11-745O10.4~Nchr2~204456090 intergenic "TMBIM4,RP11-745O10.4,TMBIM4," "-," chr12~chr2 66563635 204456090 2 -+ 0.693147 2 0 2 2 16 TCGA-DX-A23Z-01A-11R-A27Q-07 RP11-745O10.4~PBX3 fusion "TMBIM4,RP11-745O10.4,TMBIM4," "PBX3," chr12~chr9 66563635 128677965 30 -+ 2.009385 30 2 28 30 96 TCGA-DX-A23Z-01A-11R-A27Q-07 RP11-745O10.4~PBX3 fusion "TMBIM4,RP11-745O10.4,TMBIM4," "PBX3," chr12~chr9 66563635 128691934 37 -+ 2.210182 37 4 33 37 218 TCGA-DX-A23Z-01A-11R-A27Q-07 RSPH3~NOTCH4 fusion "RSPH3," "NOTCH4," chr6~chr6 159420467 32171659 14 -- 1.828841 13 2 11 13 6 TCGA-DX-A23Z-01A-11R-A27Q-07 SASH1~C11orf61 fusion "SASH1," "C11orf61," chr6~chr11 148865954 124649035 5 +- 0.500402 5 4 1 5 12 TCGA-DX-A23Z-01A-11R-A27Q-07 SASH1~Nchr12~58280479 intergenic "SASH1," "-," chr6~chr12 148865954 58280479 8 +- 0.900256 4 1 3 4 80 TCGA-DX-A23Z-01A-11R-A27Q-07 SC5DL~SPA17 fusion "SC5DL," "SPA17," chr11~chr11 121163525 124545134 409 ++ 2.7282 396 9 387 396 360 TCGA-DX-A23Z-01A-11R-A27Q-07 SC5DL~SPA17 fusion "SC5DL," "SPA17," chr11~chr11 121163525 124545143 10 ++ 1.748067 8 0 8 8 312 TCGA-DX-A23Z-01A-11R-A27Q-07 SC5DL~SPA17 fusion "SC5DL," "SPA17," chr11~chr11 121163525 124551285 18 ++ 1.849898 18 0 18 18 68 TCGA-DX-A23Z-01A-11R-A27Q-07 SLC39A7~Nchr12~58689869 intergenic "SLC39A7," "-," chr6~chr12 33170204 58689869 24 ++ 2.291559 27 5 19 27 80 TCGA-DX-A23Z-01A-11R-A27Q-07 SLC39A7~Nchr12~58703694 intergenic "SLC39A7," "-," chr6~chr12 33170204 58703694 91 ++ 2.251673 87 26 61 87 244 TCGA-DX-A23Z-01A-11R-A27Q-07 SRGAP1~Nchr12~58862379 intergenic "SRGAP1," "-," chr12~chr12 64521980 58862379 4 +- 0.562335 4 1 3 4 10 TCGA-DX-A23Z-01A-11R-A27Q-07 SRGAP1~PTPRR fusion "SRGAP1," "PTPRR," chr12~chr12 64238663 71158558 7 +- 1.078992 7 2 5 7 36 TCGA-DX-A23Z-01A-11R-A27Q-07 TAB2~SIK2 fusion "TAB2," "SIK2,PPP2R1B," chr6~chr11 149719198 111600468 8 ++ 1.386294 8 3 5 8 56 TCGA-DX-A23Z-01A-11R-A27Q-07 TAB2~SIK2 fusion "TAB2," "SIK2,PPP2R1B," chr6~chr11 149719198 111600981 210 ++ 2.945442 202 118 84 202 684 TCGA-DX-A23Z-01A-11R-A27Q-07 TAB2~SIK2 fusion "TAB2," "SIK2,PPP2R1B," chr6~chr11 149719198 111600986 18 ++ 1.849898 15 6 9 15 664 TCGA-DX-A23Z-01A-11R-A27Q-07 TNXB~Nchr9~14555734 intergenic "TNXB," "-," chr6~chr9 32035438 14555734 21 -- 2.268535 21 18 3 21 64 TCGA-DX-A23Z-01A-11R-A27Q-07 TRHDE~DPY19L2 fusion "TRHDE," "DPY19L2," chr12~chr12 72680734 63976305 6 +- 1.329661 6 3 3 6 46 TCGA-DX-A23Z-01A-11R-A27Q-07 TRIM27~PTPRR fusion "TRIM27," "PTPRR," chr6~chr12 28879473 71050597 71 -- 2.132926 70 17 53 70 292 TCGA-DX-A23Z-01A-11R-A27Q-07 ZMIZ1~CHST3 fusion "ZMIZ1," "CHST3," chr10~chr10 80878781 73765494 2 ++ 0.693147 2 2 0 2 36 TCGA-DX-A23Y-01A-11R-A27Q-07 AC069214.1~KRR1 fusion "AC069214.1," "KRR1," chr12~chr12 121341648 75902226 9 -- 1.427061 9 9 0 9 30 TCGA-DX-A23Y-01A-11R-A27Q-07 ACSS3~KRT77 fusion "ACSS3," "KRT77," chr12~chr12 81472207 53091680 2 +- 0.693147 2 1 1 2 224 TCGA-DX-A23Y-01A-11R-A27Q-07 ACSS3~KRT77 fusion "ACSS3," "KRT77," chr12~chr12 81503483 53091680 656 +- 3.124284 643 367 270 643 1944 TCGA-DX-A23Y-01A-11R-A27Q-07 ACSS3~KRT77 fusion "ACSS3," "KRT77," chr12~chr12 81503483 53092044 41 +- 2.491593 40 23 17 40 1656 TCGA-DX-A23Y-01A-11R-A27Q-07 BEST3~C12orf28 fusion "BEST3," "C12orf28," chr12~chr12 70092985 70297424 8 -+ 1.320888 8 3 5 8 2 TCGA-DX-A23Y-01A-11R-A27Q-07 C12orf29~Nchr12~70099784 intergenic "C12orf29," "-," chr12~chr12 88429515 70099784 10 +- 1.557113 10 1 9 10 28 TCGA-DX-A23Y-01A-11R-A27Q-07 C12orf29~Nchr12~84454933 intergenic "C12orf29," "-," chr12~chr12 88429515 84454933 39 +- 2.330239 31 9 22 31 64 TCGA-DX-A23Y-01A-11R-A27Q-07 C12orf29~Nchr12~84548411 intergenic "C12orf29," "-," chr12~chr12 88429515 84548411 12 +- 1.198849 11 9 2 11 64 TCGA-DX-A23Y-01A-11R-A27Q-07 C12orf50~Nchr12~89144167 intergenic "C12orf50," "-," chr12~chr12 88420265 89144167 5 -+ 1.332179 3 0 3 3 100 TCGA-DX-A23Y-01A-11R-A27Q-07 C12orf50~Nchr12~89145776 intergenic "C12orf50," "-," chr12~chr12 88420265 89145776 31 -+ 2.472088 29 20 9 29 118 TCGA-DX-A23Y-01A-11R-A27Q-07 C12orf50~Nchr12~89166840 intergenic "C12orf50," "-," chr12~chr12 88420265 89166840 26 -+ 1.682002 23 11 12 23 52 TCGA-DX-A23Y-01A-11R-A27Q-07 C3orf26~Nchr12~53074674 intergenic "C3orf26," "-," chr3~chr12 99536887 53074674 27 +- 2.43557 25 14 11 25 86 TCGA-DX-A23Y-01A-11R-A27Q-07 C6orf1~Nchr6~118645346 intergenic "C6orf1," "-," chr6~chr6 34216447 118645346 4 +- 0.562335 4 0 4 4 22 TCGA-DX-A23Y-01A-11R-A27Q-07 C6orf72~Nchr12~9886039 intergenic "C6orf72," "-," chr6~chr12 149887670 9886039 69 +- 2.793206 69 59 9 69 116 TCGA-DX-A23Y-01A-11R-A27Q-07 CAPS2~Nchr12~115489266 intergenic "CAPS2," "-," chr12~chr12 75706628 115489266 6 -- 0.693147 6 6 0 6 2 TCGA-DX-A23Y-01A-11R-A27Q-07 CAPS2~Nchr12~115512686 intergenic "CAPS2," "-," chr12~chr12 75706628 115512686 15 -- 2.048883 15 5 10 15 32 TCGA-DX-A23Y-01A-11R-A27Q-07 CCT2~DEPDC4 fusion "CCT2," "DEPDC4," chr12~chr12 69987393 100646314 99 +- 2.745302 104 49 49 104 334 TCGA-DX-A23Y-01A-11R-A27Q-07 CDC42BPB~Nchr12~89129463 intergenic "CDC42BPB," "-," chr14~chr12 103447110 89129463 5 -- 1.05492 5 4 1 5 50 TCGA-DX-A23Y-01A-11R-A27Q-07 CDC42BPB~Nchr12~89143301 intergenic "CDC42BPB," "-," chr14~chr12 103447110 89143301 16 -- 2.100679 14 8 6 14 80 TCGA-DX-A23Y-01A-11R-A27Q-07 CEP290~Nchr12~70475719 intergenic "CEP290," "-," chr12~chr12 88500773 70475719 18 -+ 2.419501 23 4 13 23 76 TCGA-DX-A23Y-01A-11R-A27Q-07 CEP290~Nchr12~96525611 intergenic "CEP290," "-," chr12~chr12 88449353 96525611 9 -+ 1.676988 9 4 5 9 14 TCGA-DX-A23Y-01A-11R-A27Q-07 CPSF6~TSPAN31 fusion "CPSF6," "TSPAN31," chr12~chr12 69633486 58139528 387 ++ 3.068742 368 311 57 368 4306 TCGA-DX-A23Y-01A-11R-A27Q-07 CPSF6~TSPAN31 fusion "CPSF6," "TSPAN31," chr12~chr12 69633486 58140372 917 ++ 2.959905 1025 795 70 1025 3056 TCGA-DX-A23Y-01A-11R-A27Q-07 CPSF6~TSPAN31 fusion "CPSF6," "TSPAN31," chr12~chr12 69633486 58140376 52 ++ 2.123765 49 47 2 49 3010 TCGA-DX-A23Y-01A-11R-A27Q-07 CTD-2216M2.1~DSC3 fusion "CTD-2216M2.1," "DSC3," chr11~chr18 123063800 28611138 5 +- 1.332179 2 0 2 2 6 TCGA-DX-A23Y-01A-11R-A27Q-07 DCAF13~DECR1 fusion "DCAF13," "DECR1," chr8~chr8 104439480 91049069 5 ++ 1.05492 1 1 0 1 24 TCGA-DX-A23Y-01A-11R-A27Q-07 ETV6~EPB41L2 fusion "ETV6," "EPB41L2," chr12~chr6 11803094 131222320 5 +- 1.332179 5 2 3 5 22 TCGA-DX-A23Y-01A-11R-A27Q-07 FRS2~CAPS2 fusion "FRS2," "CAPS2," chr12~chr12 69864310 75715356 2 +- 0.693147 2 1 1 2 2 TCGA-DX-A23Y-01A-11R-A27Q-07 FRS2~CAPS2 fusion "FRS2," "CAPS2," chr12~chr12 69864310 75720307 3 +- 0.636514 3 2 1 3 8 TCGA-DX-A23Y-01A-11R-A27Q-07 FRS2~Nchr6~105926570 intergenic "FRS2," "-," chr12~chr6 69864310 105926570 33 ++ 2.688072 27 13 13 27 98 TCGA-DX-A23Y-01A-11R-A27Q-07 FRS2~Nchr6~106035234 intergenic "FRS2," "-," chr12~chr6 69864310 106035234 5 ++ 0.950271 5 3 2 5 14 TCGA-DX-A23Y-01A-11R-A27Q-07 GTF2F2~Nchr13~66867453 intergenic "GTF2F2," "-," chr13~chr13 45710941 66867453 2 ++ 0.693147 2 1 1 2 2 TCGA-DX-A23Y-01A-11R-A27Q-07 GTF2F2~PCDH9-AS1 fusion "GTF2F2," "PCDH9-AS1," chr13~chr13 45710941 66897306 16 ++ 2.100679 15 5 10 15 30 TCGA-DX-A23Y-01A-11R-A27Q-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31236793 31321968 2 -- 0.693147 2 1 1 2 66 TCGA-DX-A23Y-01A-11R-A27Q-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31237288 31323156 16 -- 0.86474 14 10 4 14 14 TCGA-DX-A23Y-01A-11R-A27Q-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31239047 31324166 4 -- 1.039721 4 4 0 4 86 TCGA-DX-A23Y-01A-11R-A27Q-07 HVCN1~CPM fusion "HVCN1," "CPM," chr12~chr12 111126430 69279669 5 -- 0.500402 3 1 2 3 6 TCGA-DX-A23Y-01A-11R-A27Q-07 HVCN1~Nchr12~89015224 intergenic "HVCN1," "-," chr12~chr12 111126430 89015224 8 -- 1.255482 8 5 3 8 12 TCGA-DX-A23Y-01A-11R-A27Q-07 LONP2~IKBIP fusion "LONP2," "IKBIP," chr16~chr12 48330076 99008118 3 +- 0.636514 3 2 1 3 8 TCGA-DX-A23Y-01A-11R-A27Q-07 LONP2~Nchr6~116223342 intergenic "LONP2," "-," chr16~chr6 48330076 116223342 2 +- 0.693147 2 1 1 2 8 TCGA-DX-A23Y-01A-11R-A27Q-07 LYRM4~NchrY~23458106 intergenic "LYRM4," "-," chr6~chrY 5216851 23458106 7 -- 1.078992 4 0 4 4 2 TCGA-DX-A23Y-01A-11R-A27Q-07 MDM2~C12orf50 fusion "MDM2," "C12orf50," chr12~chr12 69207408 88424014 7 +- 1.277034 7 2 5 7 62 TCGA-DX-A23Y-01A-11R-A27Q-07 MDM2~Nchr12~58703694 intergenic "MDM2," "-," chr12~chr12 69207408 58703694 14 ++ 1.668174 14 6 8 14 14 TCGA-DX-A23Y-01A-11R-A27Q-07 MDM2~Nchr12~58719622 intergenic "MDM2," "-," chr12~chr12 69207408 58719622 3 ++ 0.636514 3 2 1 3 14 TCGA-DX-A23Y-01A-11R-A27Q-07 MDM2~Nchr12~58733475 intergenic "MDM2," "-," chr12~chr12 69207408 58733475 80 ++ 2.475122 40 8 32 40 154 TCGA-DX-A23Y-01A-11R-A27Q-07 MDM2~Nchr12~58733475 intergenic "MDM2," "-," chr12~chr12 69203072 58733475 8 ++ 1.494175 1 0 1 1 96 TCGA-DX-A23Y-01A-11R-A27Q-07 MDM2~Nchr12~58748961 intergenic "MDM2," "-," chr12~chr12 69207408 58748961 4 ++ 1.386294 2 0 2 2 46 TCGA-DX-A23Y-01A-11R-A27Q-07 MDM2~Nchr12~76138321 intergenic "MDM2," "-," chr12~chr12 69207408 76138321 5 ++ 0.673012 5 3 2 5 2 TCGA-DX-A23Y-01A-11R-A27Q-07 MDM2~Nchr12~76154167 intergenic "MDM2," "-," chr12~chr12 69207408 76154167 2 ++ 0.693147 1 1 0 1 42 TCGA-DX-A23Y-01A-11R-A27Q-07 MDM2~Nchr19~28613261 intergenic "MDM2," "-," chr12~chr19 69203072 28613261 2 +- 0.693147 2 1 1 2 20 TCGA-DX-A23Y-01A-11R-A27Q-07 MDM2~Nchr19~28613418 intergenic "MDM2," "-," chr12~chr19 69203072 28613418 2 +- 0.693147 2 1 1 2 14 TCGA-DX-A23Y-01A-11R-A27Q-07 MDM2~Nchr19~28617015 intergenic "MDM2," "-," chr12~chr19 69203072 28617015 6 +- 1.56071 6 0 6 6 42 TCGA-DX-A23Y-01A-11R-A27Q-07 MDM2~Nchr3~106168944 intergenic "MDM2," "-," chr12~chr3 69203072 106168944 4 +- 1.039721 4 0 4 4 14 TCGA-DX-A23Y-01A-11R-A27Q-07 MDM2~Nchr3~106176476 intergenic "MDM2," "-," chr12~chr3 69203072 106176476 2 +- 0.693147 2 2 0 2 10 TCGA-DX-A23Y-01A-11R-A27Q-07 MDM2~Nchr6~125865110 intergenic "MDM2," "-," chr12~chr6 69230529 125865110 63 ++ 2.654546 57 16 41 57 180 TCGA-DX-A23Y-01A-11R-A27Q-07 MDM2~PPFIA2 fusion "MDM2," "PPFIA2," chr12~chr12 69207408 82070623 10 +- 1.886697 7 7 0 7 2 TCGA-DX-A23Y-01A-11R-A27Q-07 MRPS18A~TRAF3IP2 fusion "MRPS18A," "TRAF3IP2," chr6~chr6 43643231 111894186 2 -- 0.693147 2 1 1 2 24 TCGA-DX-A23Y-01A-11R-A27Q-07 NDUFA12~IGHV3-9 fusion "NDUFA12," "IGHV3-9," chr12~chr14 95387946 106552592 11 -- 1.84622 11 6 5 11 40 TCGA-DX-A23Y-01A-11R-A27Q-07 NHSL1~PRDM1 fusion "NHSL1," "PRDM1," chr6~chr6 138817356 106536076 178 -+ 3.156971 171 81 90 171 430 TCGA-DX-A23Y-01A-11R-A27Q-07 NT5E~MDM2 fusion "NT5E," "MDM2," chr6~chr12 86160196 69207334 8 ++ 1.732868 8 6 2 8 94 TCGA-DX-A23Y-01A-11R-A27Q-07 NUP37~Nchr12~116163864 intergenic "NUP37," "-," chr12~chr12 102492884 116163864 11 -+ 1.720193 11 8 3 11 32 TCGA-DX-A23Y-01A-11R-A27Q-07 NUP93~Nchr12~87860577 intergenic "NUP93," "-," chr16~chr12 56832450 87860577 5 ++ 1.332179 4 2 2 4 14 TCGA-DX-A23Y-01A-11R-A27Q-07 NUP93~Nchr12~87887915 intergenic "NUP93," "-," chr16~chr12 56832450 87887915 35 ++ 2.353806 29 16 13 29 50 TCGA-DX-A23Y-01A-11R-A27Q-07 Nchr11~47213097~RPS20 intergenic "-," "RPS20," chr11~chr8 47213097 56986962 3 +- 1.098612 2 0 2 2 26 TCGA-DX-A23Y-01A-11R-A27Q-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 16 -+ 1.977006 8 0 8 8 8 TCGA-DX-A23Y-01A-11R-A27Q-07 Nchr12~58733547~Nchr12~131638811 intergenic "-," "-," chr12~chr12 58733547 131638811 16 ++ 2.220025 10 0 10 10 50 TCGA-DX-A23Y-01A-11R-A27Q-07 Nchr12~70016145~UHRF1BP1L intergenic "-," "UHRF1BP1L," chr12~chr12 70016145 100520189 15 ++ 2.02623 14 8 6 14 36 TCGA-DX-A23Y-01A-11R-A27Q-07 Nchr12~70018730~Nchr12~108283233 intergenic "-," "-," chr12~chr12 70018730 108283233 5 ++ 0.673012 4 4 0 4 40 TCGA-DX-A23Y-01A-11R-A27Q-07 Nchr12~70018730~Nchr12~108283236 intergenic "-," "-," chr12~chr12 70018730 108283236 4 ++ 1.039721 3 3 0 3 44 TCGA-DX-A23Y-01A-11R-A27Q-07 Nchr12~70018730~UHRF1BP1L intergenic "-," "UHRF1BP1L," chr12~chr12 70018730 100520189 26 ++ 2.084036 13 7 6 13 84 TCGA-DX-A23Y-01A-11R-A27Q-07 Nchr12~70019427~UHRF1BP1L intergenic "-," "UHRF1BP1L," chr12~chr12 70019427 100520189 10 ++ 1.643418 10 10 0 10 66 TCGA-DX-A23Y-01A-11R-A27Q-07 Nchr12~70023890~UHRF1BP1L intergenic "-," "UHRF1BP1L," chr12~chr12 70023890 100520189 37 ++ 2.455355 33 18 14 33 152 TCGA-DX-A23Y-01A-11R-A27Q-07 Nchr12~79849095~CCDC59 intergenic "-," "CCDC59," chr12~chr12 79849095 82617473 22 -- 2.311098 12 6 6 12 18 TCGA-DX-A23Y-01A-11R-A27Q-07 Nchr12~89257215~ECHDC1 intergenic "-," "ECHDC1," chr12~chr6 89257215 127648147 5 ++ 1.05492 5 2 3 5 2 TCGA-DX-A23Y-01A-11R-A27Q-07 Nchr12~90694155~ACSS3 intergenic "-," "ACSS3," chr12~chr12 90694155 81390084 6 +- 1.56071 4 1 3 4 22 TCGA-DX-A23Y-01A-11R-A27Q-07 Nchr12~90694155~ACSS3 intergenic "-," "ACSS3," chr12~chr12 90694155 81403594 11 +- 1.720193 10 1 9 10 60 TCGA-DX-A23Y-01A-11R-A27Q-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 3 ++ 1.098612 2 0 2 2 26 TCGA-DX-A23Y-01A-11R-A27Q-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 32 -+ 2.46678 32 15 15 32 290 TCGA-DX-A23Y-01A-11R-A27Q-07 Nchr1~48459706~RP11-543D5.3 intergenic "-," "RP11-543D5.3," chr1~chr1 48459706 48244216 3 -- 0.636514 3 2 1 3 2 TCGA-DX-A23Y-01A-11R-A27Q-07 Nchr4~138228524~RP11-138I17.1 intergenic "-," "RP11-138I17.1," chr4~chr4 138228524 138010754 9 -- 1.368922 5 0 5 5 10 TCGA-DX-A23Y-01A-11R-A27Q-07 Nchr6~153603745~Nchr6~153603655 intergenic "-," "-," chr6~chr6 153603745 153603655 2 ++ 0.693147 2 2 0 2 4 TCGA-DX-A23Y-01A-11R-A27Q-07 Nchr6~40993556~GFRAL intergenic "-," "GFRAL," chr6~chr6 40993556 55263978 23 -+ 2.177913 22 12 10 22 86 TCGA-DX-A23Y-01A-11R-A27Q-07 Nchr7~122851497~Nchr7~123096679 intergenic "-," "-," chr7~chr7 122851497 123096679 12 ++ 1.748155 12 1 11 12 74 TCGA-DX-A23Y-01A-11R-A27Q-07 Nchr7~155001607~Nchr22~38801186 intergenic "-," "-," chr7~chr22 155001607 38801186 4 -+ 0.693147 3 2 1 3 4 TCGA-DX-A23Y-01A-11R-A27Q-07 Nchr7~155001607~Nchr22~38804351 intergenic "-," "-," chr7~chr22 155001607 38804351 29 -+ 2.518554 13 10 3 13 50 TCGA-DX-A23Y-01A-11R-A27Q-07 Nchr7~155001607~RP3-434P1.6 intergenic "-," "RP3-434P1.6," chr7~chr22 155001607 38820818 7 -+ 1.475076 1 1 0 1 6 TCGA-DX-A23Y-01A-11R-A27Q-07 NchrY~23383009~PPFIA2 intergenic "-," "PPFIA2," chrY~chr12 23383009 82070623 6 -- 1.011404 2 0 2 2 2 TCGA-DX-A23Y-01A-11R-A27Q-07 ORC6~SHCBP1 fusion "ORC6," "SHCBP1," chr16~chr16 46729997 46655321 5 +- 1.332179 5 3 2 5 36 TCGA-DX-A23Y-01A-11R-A27Q-07 ORC6~SHCBP1 fusion "ORC6," "SHCBP1," chr16~chr16 46729997 46655324 13 +- 1.95126 12 2 10 12 38 TCGA-DX-A23Y-01A-11R-A27Q-07 POLH~C12orf71 fusion "POLH,GTPBP2," "C12orf71," chr6~chr12 43573056 27234400 15 +- 2.245952 14 6 8 14 26 TCGA-DX-A23Y-01A-11R-A27Q-07 PPARD~Nchr6~118645346 intergenic "PPARD," "-," chr6~chr6 35314927 118645346 17 +- 2.08443 3 0 3 3 10 TCGA-DX-A23Y-01A-11R-A27Q-07 PPARD~Nchr6~118646350 intergenic "PPARD," "-," chr6~chr6 35316780 118646350 3 +- 1.098612 3 0 3 3 4 TCGA-DX-A23Y-01A-11R-A27Q-07 PPARD~Nchr6~118646350 intergenic "PPARD," "-," chr6~chr6 35314927 118646350 4 +- 0.562335 4 0 4 4 10 TCGA-DX-A23Y-01A-11R-A27Q-07 PPFIA2~MRPL14 fusion "PPFIA2," "MRPL14," chr12~chr6 82070570 44084366 18 -- 1.842207 14 0 14 14 4 TCGA-DX-A23Y-01A-11R-A27Q-07 PPIL4~CLEC4A fusion "PPIL4," "CLEC4A," chr6~chr12 149846279 8288181 13 -+ 2.031759 12 7 5 12 86 TCGA-DX-A23Y-01A-11R-A27Q-07 PPIL4~CLEC4A fusion "PPIL4," "CLEC4A," chr6~chr12 149846279 8289384 3 -+ 1.098612 3 2 1 3 30 TCGA-DX-A23Y-01A-11R-A27Q-07 PPP1CC~KCNC2 fusion "PPP1CC," "KCNC2,RP11-81K13.1," chr12~chr12 111180458 75434986 18 -- 1.688174 18 18 0 18 60 TCGA-DX-A23Y-01A-11R-A27Q-07 PPP1CC~KCNC2 fusion "PPP1CC," "KCNC2,RP11-81K13.1," chr12~chr12 111180458 75435228 5 -- 1.332179 5 5 0 5 18 TCGA-DX-A23Y-01A-11R-A27Q-07 PPP1CC~KCNC2 fusion "PPP1CC," "KCNC2,RP11-81K13.1,KCNC2," chr12~chr12 111180458 75436154 5 -- 1.332179 5 5 0 5 62 TCGA-DX-A23Y-01A-11R-A27Q-07 PPP1CC~KCNC2 fusion "PPP1CC," "KCNC2,RP11-81K13.1,KCNC2," chr12~chr12 111180458 75437021 9 -- 1.14906 9 8 1 9 12 TCGA-DX-A23Y-01A-11R-A27Q-07 PPP1CC~KCNC2 fusion "PPP1CC," "KCNC2," chr12~chr12 111180458 75437593 7 -- 1.747868 7 4 3 7 20 TCGA-DX-A23Y-01A-11R-A27Q-07 PPP1CC~Nchr12~70015882 intergenic "PPP1CC," "-," chr12~chr12 111180458 70015882 29 -+ 2.452708 27 25 2 27 92 TCGA-DX-A23Y-01A-11R-A27Q-07 PPP1CC~Nchr12~70018637 intergenic "PPP1CC," "-," chr12~chr12 111180458 70018637 8 -+ 1.559581 1 1 0 1 12 TCGA-DX-A23Y-01A-11R-A27Q-07 PRDM1~Nchr6~126625927 intergenic "PRDM1," "-," chr6~chr6 106547427 126625927 10 +- 1.834372 8 2 6 8 98 TCGA-DX-A23Y-01A-11R-A27Q-07 PRDM1~Nchr6~126793740 intergenic "PRDM1," "-," chr6~chr6 106547427 126793740 176 +- 2.983026 111 73 38 111 292 TCGA-DX-A23Y-01A-11R-A27Q-07 PRDM4~TSFM fusion "RP11-864J10.4,PRDM4," "TSFM," chr12~chr12 108133441 58196338 2 ++ 0.693147 2 1 1 2 18 TCGA-DX-A23Y-01A-11R-A27Q-07 PTK7~CNOT2 fusion "PTK7," "CNOT2," chr6~chr12 43044305 70747609 18 ++ 2.028047 19 13 5 19 50 TCGA-DX-A23Y-01A-11R-A27Q-07 RSPH9~TRAF3IP2 fusion "RSPH9,MRPS18A," "TRAF3IP2," chr6~chr6 43639577 111894186 37 -- 2.648304 35 18 17 35 186 TCGA-DX-A23Y-01A-11R-A27Q-07 TFDP2~LONP2 fusion "TFDP2," "LONP2," chr3~chr16 141868025 48296689 8 -+ 1.906155 8 4 4 8 8 TCGA-DX-A23Y-01A-11R-A27Q-07 TFDP2~LONP2 fusion "TFDP2," "LONP2," chr3~chr16 141868025 48337083 3 -+ 1.098612 3 2 1 3 10 TCGA-DX-A23Y-01A-11R-A27Q-07 TFEB~Nchr6~119777540 intergenic "TFEB," "-," chr6~chr6 41703088 119777540 3 -- 1.098612 3 1 2 3 8 TCGA-DX-A23Y-01A-11R-A27Q-07 TFEB~Nchr6~119778349 intergenic "TFEB," "-," chr6~chr6 41703884 119778349 3 -- 0.636514 3 0 3 3 32 TCGA-DX-A23Y-01A-11R-A27Q-07 TFEB~Nchr6~119778349 intergenic "TFEB," "-," chr6~chr6 41703088 119778349 6 -- 1.242453 3 0 3 3 10 TCGA-DX-A23Y-01A-11R-A27Q-07 TFEB~Nchr6~119793621 intergenic "TFEB," "-," chr6~chr6 41703884 119793621 6 -- 1.329661 5 0 5 5 22 TCGA-DX-A23Y-01A-11R-A27Q-07 TFEB~Nchr6~119793621 intergenic "TFEB," "-," chr6~chr6 41703088 119793621 7 -- 1.004242 7 0 7 7 20 TCGA-DX-A23Y-01A-11R-A27Q-07 TMTC3~Nchr12~114709026 intergenic "TMTC3," "-," chr12~chr12 88568504 114709026 9 +- 1.21489 9 9 0 9 34 TCGA-DX-A23Y-01A-11R-A27Q-07 TMTC3~Nchr12~114714392 intergenic "TMTC3," "-," chr12~chr12 88568504 114714392 13 +- 1.884871 13 8 5 13 20 TCGA-DX-A23Y-01A-11R-A27Q-07 TRMT61A~NDUFA12 fusion "TRMT61A," "NDUFA12," chr14~chr12 103999185 95365396 3 +- 0.636514 3 2 1 3 58 TCGA-DX-A23Y-01A-11R-A27Q-07 TRMT61A~NDUFA12 fusion "TRMT61A," "NDUFA12," chr14~chr12 103999185 95388033 63 +- 3.135677 61 23 38 61 152 TCGA-DX-A23Y-01A-11R-A27Q-07 TRMT61A~NDUFA12 fusion "TRMT61A," "NDUFA12," chr14~chr12 103999185 95391186 9 +- 1.581094 9 7 2 9 158 TCGA-DX-A23Y-01A-11R-A27Q-07 TSFM~FRS2 fusion "TSFM," "FRS2," chr12~chr12 58186856 69879982 20 ++ 2.154783 20 9 11 20 28 TCGA-DX-A23Y-01A-11R-A27Q-07 TTK~TMEM63B fusion "TTK," "TMEM63B," chr6~chr6 80721265 44119583 19 ++ 2.479122 16 8 8 16 52 TCGA-DX-A23Y-01A-11R-A27Q-07 UHRF1BP1L~Nchr12~115489266 intergenic "UHRF1BP1L," "-," chr12~chr12 100491143 115489266 26 -- 2.166644 32 19 7 32 120 TCGA-DX-A23Y-01A-11R-A27Q-07 UHRF1BP1L~Nchr6~80793403 intergenic "UHRF1BP1L," "-," chr12~chr6 100536370 80793403 2 -- 0.693147 2 1 1 2 22 TCGA-DX-A23Y-01A-11R-A27Q-07 VPS35~Nchr8~73603146 intergenic "VPS35," "-," chr16~chr8 46705617 73603146 2 -- 0.693147 1 1 0 1 28 TCGA-DX-A23Y-01A-11R-A27Q-07 ZBTB10~Nchr16~48535507 intergenic "ZBTB10," "-," chr8~chr16 81412617 48535507 3 ++ 0.636514 3 1 2 3 12 TCGA-DX-A23Y-01A-11R-A27Q-07 ZC3H14~Nchr14~90076394 intergenic "ZC3H14," "-," chr14~chr14 89034497 90076394 5 ++ 1.332179 4 3 1 4 28 TCGA-DX-A23Y-01A-11R-A27Q-07 ZNF354C~PRSS3 fusion "ZNF354C," "PRSS3," chr5~chr9 178489096 33796641 11 ++ 1.46814 11 2 9 11 12 TCGA-DX-A23R-01A-11R-A26T-07 AC011497.1~Nchr19~43155239 intergenic "AC011497.1," "-," chr19~chr19 42929356 43155239 3 ++ 0.636514 3 2 1 3 4 TCGA-DX-A23R-01A-11R-A26T-07 ACVR1B~Nchr12~92037554 intergenic "ACVR1B," "-," chr12~chr12 52346555 92037554 4 ++ 0.693147 4 2 2 4 10 TCGA-DX-A23R-01A-11R-A26T-07 ACVR1B~Nchr12~92055792 intergenic "ACVR1B," "-," chr12~chr12 52345618 92055792 50 ++ 2.655414 37 6 31 37 244 TCGA-DX-A23R-01A-11R-A26T-07 ACVR1B~Nchr12~92067977 intergenic "ACVR1B," "-," chr12~chr12 52345618 92067977 5 ++ 0.950271 3 2 1 3 100 TCGA-DX-A23R-01A-11R-A26T-07 ADAMTS7~AC087465.1 fusion "ADAMTS7," "AC087465.1," chr15~chr15 79080573 77407661 24 -- 2.570223 27 12 12 27 28 TCGA-DX-A23R-01A-11R-A26T-07 ARHGEF7~EXOC4 fusion "ARHGEF7," "EXOC4," chr13~chr7 111768038 133580352 11 ++ 1.767761 9 2 7 9 16 TCGA-DX-A23R-01A-11R-A26T-07 BTBD1~FAH fusion "BTBD1," "FAH," chr15~chr15 83698888 80450402 2 -+ 0.693147 2 1 1 2 24 TCGA-DX-A23R-01A-11R-A26T-07 C12orf63~Nchr12~69494876 intergenic "C12orf63," "-," chr12~chr12 96983341 69494876 6 ++ 1.56071 6 2 4 6 30 TCGA-DX-A23R-01A-11R-A26T-07 C1orf21~Nchr1~200381781 intergenic "C1orf21," "-," chr1~chr1 184476816 200381781 10 +- 2.163956 5 0 5 5 34 TCGA-DX-A23R-01A-11R-A26T-07 C5orf17~Nchr5~24200305 intergenic "C5orf17," "-," chr5~chr5 23976159 24200305 6 ++ 0.867563 5 1 4 5 12 TCGA-DX-A23R-01A-11R-A26T-07 CACNA1C~EEA1 fusion "CACNA1C," "EEA1," chr12~chr12 2229596 93213287 15 +- 2.306669 16 4 11 16 64 TCGA-DX-A23R-01A-11R-A26T-07 CACNA1C~EEA1 fusion "CACNA1C," "EEA1," chr12~chr12 2229596 93220061 49 +- 2.73916 47 13 34 47 188 TCGA-DX-A23R-01A-11R-A26T-07 CACNA1C~Nchr12~2300632 intergenic "CACNA1C," "-," chr12~chr12 2162777 2300632 22 +- 2.473208 21 11 10 21 58 TCGA-DX-A23R-01A-11R-A26T-07 CACNA1C~Nchr12~92991836 intergenic "CACNA1C," "-," chr12~chr12 2229596 92991836 23 +- 2.499065 24 14 9 24 44 TCGA-DX-A23R-01A-11R-A26T-07 CACNA1C~Nchr12~93004675 intergenic "CACNA1C," "-," chr12~chr12 2229596 93004675 3 +- 0.636514 3 1 2 3 10 TCGA-DX-A23R-01A-11R-A26T-07 CACNA1C~Nchr16~49213023 intergenic "CACNA1C," "-," chr12~chr16 2229596 49213023 7 ++ 1.277034 7 1 6 7 40 TCGA-DX-A23R-01A-11R-A26T-07 CACNA1C~SLC6A15 fusion "CACNA1C," "SLC6A15," chr12~chr12 2229596 85264449 20 +- 2.23327 18 12 6 18 52 TCGA-DX-A23R-01A-11R-A26T-07 CACNA1C~TSPAN8 fusion "CACNA1C," "TSPAN8," chr12~chr12 2229596 71676599 11 +- 1.972247 7 5 2 7 28 TCGA-DX-A23R-01A-11R-A26T-07 CDC73~SWT1 fusion "CDC73," "SWT1," chr1~chr1 193205486 185153375 13 ++ 1.925121 12 2 10 12 42 TCGA-DX-A23R-01A-11R-A26T-07 CHD4~CPM fusion "CHD4," "CPM," chr12~chr12 6699451 69265736 3 -- 0.636514 3 0 3 3 1030 TCGA-DX-A23R-01A-11R-A26T-07 CHD4~CPM fusion "CHD4," "CPM," chr12~chr12 6700632 69265736 403 -- 3.175708 394 97 294 394 1080 TCGA-DX-A23R-01A-11R-A26T-07 CHD4~CPM fusion "CHD4," "CPM," chr12~chr12 6700632 69269131 9 -- 1.676988 8 1 7 8 684 TCGA-DX-A23R-01A-11R-A26T-07 CHD4~CPM fusion "CHD4," "CPM," chr12~chr12 6700632 69270452 13 -- 2.098147 13 6 7 13 22 TCGA-DX-A23R-01A-11R-A26T-07 CNOT2~Nchr12~72603760 intergenic "CNOT2," "-," chr12~chr12 70679366 72603760 2 +- 0.693147 2 0 2 2 2 TCGA-DX-A23R-01A-11R-A26T-07 CNOT2~Nchr12~72603760 intergenic "CNOT2," "-," chr12~chr12 70672054 72603760 4 +- 1.386294 2 1 1 2 38 TCGA-DX-A23R-01A-11R-A26T-07 CNOT2~Nchr12~72610374 intergenic "CNOT2," "-," chr12~chr12 70672054 72610374 4 +- 1.039721 3 3 0 3 24 TCGA-DX-A23R-01A-11R-A26T-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94047811 3 -+ 0.636514 3 2 1 3 22 TCGA-DX-A23R-01A-11R-A26T-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272593 94047811 2 -+ 0.693147 2 2 0 2 18 TCGA-DX-A23R-01A-11R-A26T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272828 189870095 3 -+ 1.098612 3 1 2 3 2 TCGA-DX-A23R-01A-11R-A26T-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94049717 189859456 3 ++ 1.098612 1 0 1 1 10 TCGA-DX-A23R-01A-11R-A26T-07 COL3A1~IGF2 fusion "COL3A1," "IGF2,IGF2," chr2~chr11 189868157 2152403 3 +- 0.636514 2 0 2 2 12 TCGA-DX-A23R-01A-11R-A26T-07 COL3A1~Nchr2~191619285 intergenic "COL3A1," "-," chr2~chr2 189870183 191619285 4 +- 0.562335 4 3 1 4 12 TCGA-DX-A23R-01A-11R-A26T-07 COL3A1~Nchr2~191619853 intergenic "COL3A1," "-," chr2~chr2 189870183 191619853 7 +- 1.351784 7 2 5 7 26 TCGA-DX-A23R-01A-11R-A26T-07 COPZ1~Nchr12~57400888 intergenic "COPZ1," "-," chr12~chr12 54737100 57400888 14 ++ 2.242973 14 4 10 14 52 TCGA-DX-A23R-01A-11R-A26T-07 CPM~Nchr12~92049691 intergenic "CPM," "-," chr12~chr12 69252703 92049691 24 -- 2.325778 21 14 7 21 550 TCGA-DX-A23R-01A-11R-A26T-07 CPM~Nchr12~92051215 intergenic "CPM," "-," chr12~chr12 69252703 92051215 128 -- 2.996998 130 69 39 130 148 TCGA-DX-A23R-01A-11R-A26T-07 CRADD~GRIP1 fusion "CRADD," "GRIP1," chr12~chr12 94072848 66859202 18 +- 2.183187 14 6 8 14 44 TCGA-DX-A23R-01A-11R-A26T-07 CTDSP2~CPM fusion "CTDSP2," "CPM," chr12~chr12 58240155 69252851 6 -- 1.56071 5 0 5 5 12 TCGA-DX-A23R-01A-11R-A26T-07 CTDSP2~LRP1 fusion "CTDSP2," "LRP1," chr12~chr12 58240155 57559588 7 -+ 1.747868 7 6 1 7 18 TCGA-DX-A23R-01A-11R-A26T-07 CTDSP2~NFE2 fusion "CTDSP2," "NFE2," chr12~chr12 58240155 54689088 11 -- 1.84622 8 7 1 8 28 TCGA-DX-A23R-01A-11R-A26T-07 CTDSP2~Nchr12~69409459 intergenic "CTDSP2," "-," chr12~chr12 58240155 69409459 4 -- 1.039721 4 0 4 4 10 TCGA-DX-A23R-01A-11R-A26T-07 CTDSP2~Nchr12~69418576 intergenic "CTDSP2," "-," chr12~chr12 58240155 69418576 4 -- 1.386294 4 0 4 4 10 TCGA-DX-A23R-01A-11R-A26T-07 CTDSP2~Nchr12~69418896 intergenic "CTDSP2," "-," chr12~chr12 58240155 69418896 3 -- 0.636514 3 0 3 3 4 TCGA-DX-A23R-01A-11R-A26T-07 CTDSP2~Nchr12~69423557 intergenic "CTDSP2," "-," chr12~chr12 58240155 69423557 3 -- 0.636514 3 0 3 3 20 TCGA-DX-A23R-01A-11R-A26T-07 CTDSP2~Nchr12~69465962 intergenic "CTDSP2," "-," chr12~chr12 58240155 69465962 4 -- 1.386294 4 0 4 4 4 TCGA-DX-A23R-01A-11R-A26T-07 DCTN2~EEA1 fusion "DCTN2," "EEA1," chr12~chr12 57939811 93258763 2 -- 0.693147 2 1 1 2 16 TCGA-DX-A23R-01A-11R-A26T-07 DCTN2~NAV3 fusion "DCTN2," "NAV3," chr12~chr12 57939811 78522486 28 -+ 2.59921 27 12 15 27 124 TCGA-DX-A23R-01A-11R-A26T-07 DCTN2~Nchr12~82575826 intergenic "DCTN2," "-," chr12~chr12 57939811 82575826 14 -- 1.767195 3 3 0 3 10 TCGA-DX-A23R-01A-11R-A26T-07 DCTN2~Nchr12~82581990 intergenic "DCTN2," "-," chr12~chr12 57939811 82581990 30 -- 2.29092 27 13 14 27 98 TCGA-DX-A23R-01A-11R-A26T-07 DCTN2~Nchr12~92180776 intergenic "DCTN2," "-," chr12~chr12 57939811 92180776 3 -- 0.636514 3 2 1 3 10 TCGA-DX-A23R-01A-11R-A26T-07 DERA~DNAJA2 fusion "DERA," "DNAJA2," chr12~chr16 16064348 47005867 7 +- 1.549826 7 0 7 7 14 TCGA-DX-A23R-01A-11R-A26T-07 EEA1~Nchr12~75030157 intergenic "EEA1," "-," chr12~chr12 93213084 75030157 16 -+ 1.559581 16 14 2 16 336 TCGA-DX-A23R-01A-11R-A26T-07 EEA1~Nchr12~75039310 intergenic "EEA1," "-," chr12~chr12 93213084 75039310 13 -+ 2.143952 14 5 8 14 300 TCGA-DX-A23R-01A-11R-A26T-07 EPHB3~PAX2 fusion "EPHB3," "PAX2," chr3~chr10 184290964 102566187 6 ++ 1.791759 6 3 3 6 20 TCGA-DX-A23R-01A-11R-A26T-07 FRS2~PLEKHG7 fusion "FRS2," "PLEKHG7," chr12~chr12 69864310 93134629 27 ++ 2.608982 17 8 9 17 160 TCGA-DX-A23R-01A-11R-A26T-07 FRS2~PLEKHG7 fusion "FRS2," "PLEKHG7," chr12~chr12 69867988 93134629 7 ++ 1.747868 5 3 2 5 12 TCGA-DX-A23R-01A-11R-A26T-07 GRIP1~Nchr16~49175444 intergenic "GRIP1," "-," chr12~chr16 66786088 49175444 3 -+ 0.636514 3 3 0 3 24 TCGA-DX-A23R-01A-11R-A26T-07 GRIP1~Nchr16~49193548 intergenic "GRIP1," "-," chr12~chr16 66786088 49193548 5 -+ 0.950271 5 0 5 5 6 TCGA-DX-A23R-01A-11R-A26T-07 HIBCH~PHKA1 fusion "HIBCH," "PHKA1," chr2~chrX 191109613 71873380 2 -- 0.693147 1 1 0 1 6 TCGA-DX-A23R-01A-11R-A26T-07 HNRNPC~NDRG2 fusion "HNRNPC," "NDRG2," chr14~chr14 21698478 21490038 10 -- 1.834372 10 8 2 10 16 TCGA-DX-A23R-01A-11R-A26T-07 HNRNPC~NDRG2 fusion "HNRNPC," "NDRG2," chr14~chr14 21698478 21491480 19 -- 2.278118 15 3 12 15 14 TCGA-DX-A23R-01A-11R-A26T-07 IGF2~SQSTM1 fusion "IGF2,IGF2," "C5orf45,SQSTM1,C5orf45," chr11~chr5 2152672 179263778 2 -- 0.693147 2 1 1 2 2 TCGA-DX-A23R-01A-11R-A26T-07 KDM4C~Nchr9~10616617 intergenic "KDM4C," "-," chr9~chr9 6814745 10616617 3 ++ 1.098612 3 0 3 3 6 TCGA-DX-A23R-01A-11R-A26T-07 KIF5A~Nchr12~92262317 intergenic "KIF5A," "-," chr12~chr12 57958756 92262317 2 ++ 0.693147 2 0 2 2 38 TCGA-DX-A23R-01A-11R-A26T-07 LDLRAD3~PRR5L fusion "LDLRAD3," "PRR5L," chr11~chr11 36120011 36415396 2 ++ 0.693147 2 1 1 2 8 TCGA-DX-A23R-01A-11R-A26T-07 LIMK1~Nchr12~47049423 intergenic "LIMK1," "-," chr7~chr12 73513568 47049423 2 +- 0.693147 2 0 2 2 12 TCGA-DX-A23R-01A-11R-A26T-07 LIN7A~Nchr17~27531467 intergenic "LIN7A," "-," chr12~chr17 81239509 27531467 9 -- 1.676988 9 1 8 9 2 TCGA-DX-A23R-01A-11R-A26T-07 LRP1~MARS fusion "LRP1," "MARS," chr12~chr12 57567763 57908503 9 ++ 1.889159 8 3 5 8 46 TCGA-DX-A23R-01A-11R-A26T-07 MAP4K4~Nchr2~102581162 intergenic "MAP4K4," "-," chr2~chr2 102315000 102581162 5 ++ 1.609438 5 1 4 5 44 TCGA-DX-A23R-01A-11R-A26T-07 MAP4K4~Nchr2~102600154 intergenic "MAP4K4," "-," chr2~chr2 102315000 102600154 31 ++ 2.623124 31 5 26 31 74 TCGA-DX-A23R-01A-11R-A26T-07 MDM2~ATF7 fusion "MDM2," "ATF7," chr12~chr12 69210725 53994805 8 +- 1.667462 8 5 3 8 16 TCGA-DX-A23R-01A-11R-A26T-07 MKRN1~NLGN1 fusion "MKRN1," "NLGN1," chr7~chr3 140171683 173993105 8 -+ 1.559581 6 6 0 6 36 TCGA-DX-A23R-01A-11R-A26T-07 N4BP1~NAV3 fusion "N4BP1," "NAV3," chr16~chr12 48594665 78510552 14 -+ 1.908535 13 2 11 13 10 TCGA-DX-A23R-01A-11R-A26T-07 NAV3~Nchr12~47046173 intergenic "NAV3," "-," chr12~chr12 78225484 47046173 3 ++ 1.098612 3 2 1 3 8 TCGA-DX-A23R-01A-11R-A26T-07 NAV3~SLC6A15 fusion "NAV3," "SLC6A15," chr12~chr12 78574825 85279340 18 +- 2.216102 18 11 7 18 58 TCGA-DX-A23R-01A-11R-A26T-07 NUP107~Nchr12~74626980 intergenic "NUP107," "-," chr12~chr12 69121169 74626980 52 +- 2.52805 52 23 28 52 148 TCGA-DX-A23R-01A-11R-A26T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 22 -+ 2.2243 9 0 9 9 8 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~34058204~DCN intergenic "-," "DCN," chr12~chr12 34058204 91572362 2 -- 0.693147 2 0 2 2 16 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~34058204~RP11-366L20.2 intergenic "-," "RP11-366L20.2," chr12~chr12 34058204 66260734 4 -- 0.562335 2 0 2 2 26 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~34058204~RP11-366L20.3 intergenic "-," "RP11-366L20.3," chr12~chr12 34058204 66328909 22 -- 2.500138 10 2 8 10 48 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~34058204~RP11-366L20.3 intergenic "-," "RP11-366L20.3," chr12~chr12 34058204 66336473 5 -- 1.791759 5 0 4 5 54 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~52205093~CPM intergenic "-," "CPM," chr12~chr12 52205093 69252851 11 -- 1.972247 10 2 8 10 54 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~52207038~CPM intergenic "-," "CPM," chr12~chr12 52207038 69252851 13 -- 1.991509 10 3 7 10 38 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~57824848~Nchr16~49248795 intergenic "-," "-," chr12~chr16 57824848 49248795 5 -- 1.332179 4 1 3 4 8 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~68100262~NUP107 intergenic "-," "NUP107," chr12~chr12 68100262 69113121 4 -+ 0.562335 4 0 4 4 6 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~73092000~Nchr12~92339078 intergenic "-," "-," chr12~chr12 73092000 92339078 3 -- 0.636514 2 0 2 2 10 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~73557013~SLC6A15 intergenic "-," "SLC6A15," chr12~chr12 73557013 85255988 46 ++ 2.715473 26 0 26 26 26 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~74544782~Nchr12~21016263 intergenic "-," "-," chr12~chr12 74544782 21016263 4 -- 0.562335 4 3 1 4 16 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~77473518~PPHLN1 intergenic "-," "PPHLN1," chr12~chr12 77473518 42768665 4 ++ 1.386294 3 2 1 3 12 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~77587776~E2F7 intergenic "-," "E2F7," chr12~chr12 77587776 77438573 18 ++ 1.955984 12 8 4 12 30 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~77587776~E2F7 intergenic "-," "E2F7," chr12~chr12 77587776 77444167 4 ++ 1.039721 3 2 1 3 4 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~77587776~Nchr12~86096659 intergenic "-," "-," chr12~chr12 77587776 86096659 5 ++ 1.332179 2 1 1 2 30 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~77587776~Nchr16~49213023 intergenic "-," "-," chr12~chr16 77587776 49213023 48 ++ 2.433388 22 8 14 22 82 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~77587776~TSPAN8 intergenic "-," "TSPAN8," chr12~chr12 77587776 71676599 8 +- 1.255482 2 2 0 2 16 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~80489626~Nchr12~34078274 intergenic "-," "-," chr12~chr12 80489626 34078274 3 -- 0.636514 3 3 0 3 8 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~82575767~NAV3 intergenic "-," "NAV3," chr12~chr12 82575767 78522486 29 -+ 2.548315 18 13 5 18 100 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~82575767~NAV3 intergenic "-," "NAV3," chr12~chr12 82575767 78530957 3 -+ 0.636514 1 1 0 1 18 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~82581803~NAV3 intergenic "-," "NAV3," chr12~chr12 82581803 78522486 11 -+ 2.145842 6 4 2 6 62 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~91976163~Nchr12~80118285 intergenic "-," "-," chr12~chr12 91976163 80118285 3 +- 0.636514 3 3 0 3 6 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~91981781~Nchr12~80118285 intergenic "-," "-," chr12~chr12 91981781 80118285 10 +- 1.695743 9 8 1 9 10 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~92046645~RP11-23J18.1 intergenic "-," "RP11-23J18.1," chr12~chr12 92046645 47529717 3 -- 1.098612 2 1 1 2 144 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~92046645~RP11-23J18.1 intergenic "-," "RP11-23J18.1," chr12~chr12 92046645 47529728 145 -- 3.136429 154 93 17 154 142 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~92087962~MDM2 intergenic "-," "MDM2," chr12~chr12 92087962 69202988 17 ++ 2.282374 16 7 9 16 88 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~92087962~Nchr12~92067977 intergenic "-," "-," chr12~chr12 92087962 92067977 5 ++ 1.05492 5 1 4 5 2 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~92087962~SMARCD1 intergenic "-," "SMARCD1," chr12~chr12 92087962 50479944 10 ++ 1.609438 9 2 7 9 26 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~92154836~SLC35E3 intergenic "-," "AC124890.1,SLC35E3," chr12~chr12 92154836 69187068 2 ++ 0.693147 2 1 1 2 4 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~95252845~SLC6A15 intergenic "-," "SLC6A15," chr12~chr12 95252845 85267043 8 +- 1.559581 3 2 1 3 30 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~95252845~SLC6A15 intergenic "-," "SLC6A15," chr12~chr12 95252845 85267107 8 +- 1.732868 7 6 1 7 28 TCGA-DX-A23R-01A-11R-A26T-07 Nchr12~95267416~Nchr16~48460560 intergenic "-," "-," chr12~chr16 95267416 48460560 5 -+ 1.332179 5 0 5 5 6 TCGA-DX-A23R-01A-11R-A26T-07 Nchr14~28125544~Nchr14~27791347 intergenic "-," "-," chr14~chr14 28125544 27791347 6 -- 1.94591 7 5 1 7 54 TCGA-DX-A23R-01A-11R-A26T-07 Nchr14~28125649~Nchr14~27791347 intergenic "-," "-," chr14~chr14 28125649 27791347 13 -- 2.031759 12 8 4 12 40 TCGA-DX-A23R-01A-11R-A26T-07 Nchr16~48657514~LTA4H intergenic "-," "LTA4H," chr16~chr12 48657514 96400187 8 +- 1.039721 8 8 0 8 86 TCGA-DX-A23R-01A-11R-A26T-07 Nchr16~48657514~LTA4H intergenic "-," "LTA4H," chr16~chr12 48657514 96402926 5 +- 0.950271 5 4 1 5 92 TCGA-DX-A23R-01A-11R-A26T-07 Nchr16~49248684~ANKRD33 intergenic "-," "ANKRD33," chr16~chr12 49248684 52282352 6 -+ 1.56071 6 5 1 6 12 TCGA-DX-A23R-01A-11R-A26T-07 Nchr16~79619777~Nchr16~79246798 intergenic "-," "-," chr16~chr16 79619777 79246798 6 -- 1.791759 5 4 1 5 20 TCGA-DX-A23R-01A-11R-A26T-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 8 ++ 1.732868 5 2 3 5 50 TCGA-DX-A23R-01A-11R-A26T-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 14 ++ 2.341994 11 4 7 11 60 TCGA-DX-A23R-01A-11R-A26T-07 Nchr18~37115422~Nchr18~36788753 intergenic "-," "-," chr18~chr18 37115422 36788753 4 -- 1.386294 3 2 1 3 20 TCGA-DX-A23R-01A-11R-A26T-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 5 -- 1.332179 2 1 1 2 26 TCGA-DX-A23R-01A-11R-A26T-07 Nchr21~17882762~Nchr21~17979453 intergenic "-," "-," chr21~chr21 17882762 17979453 2 -- 0.693147 1 1 0 1 22 TCGA-DX-A23R-01A-11R-A26T-07 Nchr2~12823899~TRIB2 intergenic "-," "TRIB2," chr2~chr2 12823899 12882417 6 -- 1.56071 6 1 5 6 46 TCGA-DX-A23R-01A-11R-A26T-07 Nchr2~81775871~Nchr2~82024942 intergenic "-," "-," chr2~chr2 81775871 82024942 6 ++ 1.242453 6 4 2 6 4 TCGA-DX-A23R-01A-11R-A26T-07 Nchr4~85891029~ARHGAP24 intergenic "-," "ARHGAP24," chr4~chr4 85891029 86844801 2 ++ 0.693147 2 2 0 2 4 TCGA-DX-A23R-01A-11R-A26T-07 Nchr5~166500361~Nchr5~166711769 intergenic "-," "-," chr5~chr5 166500361 166711769 3 ++ 0.636514 2 2 0 2 4 TCGA-DX-A23R-01A-11R-A26T-07 OS9~TMTC2 fusion "OS9," "TMTC2," chr12~chr12 58090156 83134241 7 ++ 1.747868 6 4 2 6 4 TCGA-DX-A23R-01A-11R-A26T-07 PAWR~Nchr12~34058327 intergenic "PAWR," "-," chr12~chr12 80083509 34058327 34 -- 2.338537 12 5 7 12 48 TCGA-DX-A23R-01A-11R-A26T-07 PAWR~Nchr12~80490658 intergenic "PAWR," "-," chr12~chr12 80083509 80490658 40 -- 2.462054 28 12 15 28 82 TCGA-DX-A23R-01A-11R-A26T-07 PAWR~Nchr12~91623014 intergenic "PAWR," "-," chr12~chr12 80083509 91623014 3 -- 0.636514 3 2 1 3 8 TCGA-DX-A23R-01A-11R-A26T-07 PAWR~RP11-366L20.3 fusion "PAWR," "RP11-366L20.3," chr12~chr12 80083509 66328909 16 -- 1.890363 16 10 6 16 40 TCGA-DX-A23R-01A-11R-A26T-07 PAWR~RP11-366L20.3 fusion "PAWR," "RP11-366L20.3," chr12~chr12 80083509 66336473 5 -- 1.05492 5 5 0 5 18 TCGA-DX-A23R-01A-11R-A26T-07 PHKB~SCN8A fusion "PHKB," "SCN8A," chr16~chr12 47730399 52077958 27 ++ 2.309864 27 21 6 27 126 TCGA-DX-A23R-01A-11R-A26T-07 PLEKHG7~MRPL42 fusion "PLEKHG7," "MRPL42," chr12~chr12 93135368 93894952 34 ++ 2.31368 26 10 16 26 150 TCGA-DX-A23R-01A-11R-A26T-07 POLE4~Nchr2~75503636 intergenic "POLE4," "-," chr2~chr2 75187273 75503636 8 ++ 1.386294 8 6 2 8 6 TCGA-DX-A23R-01A-11R-A26T-07 PPHLN1~TBC1D15 fusion "PPHLN1," "TBC1D15," chr12~chr12 42792796 72265850 2 ++ 0.693147 2 1 1 2 10 TCGA-DX-A23R-01A-11R-A26T-07 PTPRG~Nchr9~18012817 intergenic "PTPRG," "-," chr3~chr9 61989171 18012817 9 +- 1.889159 9 7 2 9 30 TCGA-DX-A23R-01A-11R-A26T-07 PTPRG~Nchr9~18037828 intergenic "PTPRG," "-," chr3~chr9 61989171 18037828 5 +- 0.950271 5 4 1 5 28 TCGA-DX-A23R-01A-11R-A26T-07 PTPRG~Nchr9~18048386 intergenic "PTPRG," "-," chr3~chr9 61989171 18048386 3 +- 1.098612 3 2 1 3 26 TCGA-DX-A23R-01A-11R-A26T-07 PTPRG~Nchr9~18049933 intergenic "PTPRG," "-," chr3~chr9 61989171 18049933 6 +- 1.242453 5 4 1 5 28 TCGA-DX-A23R-01A-11R-A26T-07 PTPRK~PEX5L fusion "PTPRK," "PEX5L," chr6~chr3 128505577 179605572 2 -- 0.693147 2 1 1 2 8 TCGA-DX-A23R-01A-11R-A26T-07 R3HDM2~Nchr16~49248795 intergenic "R3HDM2," "-," chr12~chr16 57824503 49248795 65 -- 2.844024 55 0 53 55 56 TCGA-DX-A23R-01A-11R-A26T-07 RIMKLB~Nchr12~78939019 intergenic "RIMKLB," "-," chr12~chr12 8866637 78939019 4 ++ 1.039721 4 2 2 4 2 TCGA-DX-A23R-01A-11R-A26T-07 RIMKLB~Nchr12~78944740 intergenic "RIMKLB," "-," chr12~chr12 8866637 78944740 8 ++ 1.494175 8 3 5 8 44 TCGA-DX-A23R-01A-11R-A26T-07 RIMKLB~Nchr12~79013883 intergenic "RIMKLB," "-," chr12~chr12 8866637 79013883 12 ++ 1.979205 12 9 3 12 70 TCGA-DX-A23R-01A-11R-A26T-07 RIMKLB~Nchr12~79013886 intergenic "RIMKLB," "-," chr12~chr12 8866637 79013886 15 ++ 2.245952 15 5 10 15 70 TCGA-DX-A23R-01A-11R-A26T-07 RIMKLB~Nchr12~79013916 intergenic "RIMKLB," "-," chr12~chr12 8866637 79013916 3 ++ 1.098612 3 2 1 3 52 TCGA-DX-A23R-01A-11R-A26T-07 RIMKLB~Nchr12~79027892 intergenic "RIMKLB," "-," chr12~chr12 8866637 79027892 3 ++ 1.098612 3 2 1 3 60 TCGA-DX-A23R-01A-11R-A26T-07 RIMKLB~Nchr12~79030442 intergenic "RIMKLB," "-," chr12~chr12 8866637 79030442 19 ++ 2.595309 18 8 8 18 64 TCGA-DX-A23R-01A-11R-A26T-07 RIMKLB~Nchr12~79123090 intergenic "RIMKLB," "-," chr12~chr12 8866637 79123090 3 ++ 1.098612 1 0 1 1 26 TCGA-DX-A23R-01A-11R-A26T-07 RIMKLB~Nchr12~79187907 intergenic "RIMKLB," "-," chr12~chr12 8866637 79187907 3 ++ 0.636514 3 0 3 3 4 TCGA-DX-A23R-01A-11R-A26T-07 RP1-45C12.1~Nchr1~170776745 intergenic "RP1-45C12.1," "-," chr1~chr1 171137243 170776745 9 -- 1.303092 1 1 0 1 6 TCGA-DX-A23R-01A-11R-A26T-07 RP11-114H23.1~Nchr4~68264438 intergenic "RP11-114H23.1," "-," chr12~chr4 75998917 68264438 30 -+ 2.340309 19 17 2 19 12 TCGA-DX-A23R-01A-11R-A26T-07 RP11-366L20.2~Nchr12~91623014 intergenic "RP11-366L20.2," "-," chr12~chr12 66260584 91623014 5 -- 1.332179 4 1 3 4 8 TCGA-DX-A23R-01A-11R-A26T-07 RP11-366L20.2~Nchr12~91652336 intergenic "RP11-366L20.2," "-," chr12~chr12 66260584 91652336 4 -- 1.039721 1 1 0 1 4 TCGA-DX-A23R-01A-11R-A26T-07 RP11-43N5.1~NUP107 fusion "RP11-43N5.1," "NUP107," chr12~chr12 68104296 69113121 3 -+ 0.636514 3 2 1 3 2 TCGA-DX-A23R-01A-11R-A26T-07 RP11-571M6.15~Nchr12~73481197 intergenic "METTL21B,RP11-571M6.15," "-," chr12~chr12 58166911 73481197 12 ++ 2.094729 5 2 3 5 8 TCGA-DX-A23R-01A-11R-A26T-07 RP11-571M6.15~Nchr12~73498939 intergenic "METTL21B,RP11-571M6.15," "-," chr12~chr12 58166911 73498939 15 ++ 1.93381 4 1 3 4 2 TCGA-DX-A23R-01A-11R-A26T-07 RP11-571M6.15~Nchr12~73556974 intergenic "METTL21B,RP11-571M6.15," "-," chr12~chr12 58166911 73556974 267 ++ 3.129221 92 82 8 92 50 TCGA-DX-A23R-01A-11R-A26T-07 RP11-571M6.15~Nchr12~73556974 intergenic "METTL21B,RP11-571M6.15," "-," chr12~chr12 58166856 73556974 17 ++ 2.445468 7 5 2 7 34 TCGA-DX-A23R-01A-11R-A26T-07 RP11-962G15.1~Nchr8~36284582 intergenic "RP11-962G15.1," "-," chr8~chr8 36559339 36284582 16 -- 2.014036 10 9 1 10 14 TCGA-DX-A23R-01A-11R-A26T-07 RP11-96H19.1~Nchr12~73092084 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 73092084 3 +- 1.098612 1 1 0 1 10 TCGA-DX-A23R-01A-11R-A26T-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 6 +- 0.867563 5 0 5 5 2 TCGA-DX-A23R-01A-11R-A26T-07 SCAPER~Nchr13~73971040 intergenic "SCAPER," "-," chr15~chr13 77134075 73971040 10 -+ 1.557113 10 6 4 10 40 TCGA-DX-A23R-01A-11R-A26T-07 SCAPER~Nchr13~73973167 intergenic "SCAPER," "-," chr15~chr13 77134075 73973167 2 -+ 0.693147 2 1 1 2 30 TCGA-DX-A23R-01A-11R-A26T-07 SCN8A~Nchr12~57824993 intergenic "SCN8A," "-," chr12~chr12 52115692 57824993 6 +- 1.791759 6 6 0 6 10 TCGA-DX-A23R-01A-11R-A26T-07 SLC35E3~COPZ1 fusion "SLC35E3," "COPZ1," chr12~chr12 69145970 54735990 4 ++ 1.386294 4 2 2 4 24 TCGA-DX-A23R-01A-11R-A26T-07 STX1A~Nchr12~80118285 intergenic "STX1A," "-," chr7~chr12 73133932 80118285 6 -- 1.56071 6 6 0 6 14 TCGA-DX-A23R-01A-11R-A26T-07 SWT1~Nchr1~188113028 intergenic "SWT1," "-," chr1~chr1 185200840 188113028 18 ++ 2.370135 15 10 5 15 50 TCGA-DX-A23R-01A-11R-A26T-07 SYT1~PHKB fusion "SYT1," "PHKB," chr12~chr16 79258889 47722952 32 ++ 2.460534 29 7 22 29 86 TCGA-DX-A23R-01A-11R-A26T-07 TCF4~Nchr5~14044 intergenic "TCF4," "-," chr18~chr5 53017590 14044 7 -+ 1.906155 3 1 1 3 24 TCGA-DX-A23R-01A-11R-A26T-07 TCF4~Nchr5~29463 intergenic "TCF4," "-," chr18~chr5 53017590 29463 14 -+ 2.242973 12 6 6 12 30 TCGA-DX-A23R-01A-11R-A26T-07 TKT~Nchr3~43809202 intergenic "TKT," "-," chr3~chr3 53289852 43809202 2 -- 0.693147 2 1 1 2 32 TCGA-DX-A23R-01A-11R-A26T-07 TKT~Nchr3~43838730 intergenic "TKT," "-," chr3~chr3 53289852 43838730 23 -- 2.16013 23 11 12 23 62 TCGA-DX-A23R-01A-11R-A26T-07 TM9SF2~CPM fusion "TM9SF2," "CPM," chr13~chr12 100154031 69252851 4 +- 1.039721 4 4 0 4 14 TCGA-DX-A23R-01A-11R-A26T-07 TM9SF2~Nchr22~47786666 intergenic "TM9SF2," "-," chr13~chr22 100154031 47786666 7 +- 1.747868 7 4 3 7 18 TCGA-DX-A23R-01A-11R-A26T-07 TMTC2~DNAJA2 fusion "TMTC2," "DNAJA2," chr12~chr16 83150905 47005867 13 +- 2.138397 9 0 9 9 8 TCGA-DX-A23R-01A-11R-A26T-07 TSFM~Nchr12~72611183 intergenic "TSFM," "-," chr12~chr12 58176682 72611183 3 +- 1.098612 2 1 1 2 8 TCGA-DX-A23R-01A-11R-A26T-07 TSFM~Nchr12~92991836 intergenic "TSFM," "-," chr12~chr12 58186856 92991836 3 +- 1.098612 3 2 1 3 10 TCGA-DX-A23R-01A-11R-A26T-07 TSPAN3~MDM2 fusion "TSPAN3," "MDM2," chr15~chr12 77344727 69207334 6 -+ 1.329661 5 3 2 5 14 TCGA-DX-A23R-01A-11R-A26T-07 UBE2N~Nchr12~56109259 intergenic "UBE2N," "-," chr12~chr12 93835631 56109259 3 -+ 0.636514 3 2 1 3 2 TCGA-DX-A23R-01A-11R-A26T-07 UBE2N~Nchr12~56109774 intergenic "UBE2N," "-," chr12~chr12 93835631 56109774 4 -+ 1.039721 4 4 0 4 12 TCGA-DX-A23R-01A-11R-A26T-07 UGGT2~Nchr13~108120900 intergenic "UGGT2," "-," chr13~chr13 96485181 108120900 13 -- 1.778233 12 11 1 12 32 TCGA-DX-A23R-01A-11R-A26T-07 VDR~Nchr12~69409219 intergenic "VDR," "-," chr12~chr12 48298738 69409219 5 -+ 1.332179 5 1 4 5 6 TCGA-DX-A23R-01A-11R-A26T-07 ZNF385A~NAV3 fusion "ZNF385A," "NAV3," chr12~chr12 54778212 78552983 13 -+ 1.925121 13 10 3 13 40 TCGA-DX-A23T-01A-11R-A26T-07 AIM1~Nchr16~1939116 intergenic "AIM1," "-," chr6~chr16 106808956 1939116 8 ++ 0.693147 8 8 0 8 16 TCGA-DX-A23T-01A-11R-A26T-07 C6orf62~POLR3D fusion "C6orf62," "POLR3D," chr6~chr8 24705954 22104734 16 -+ 1.353591 16 5 11 16 46 TCGA-DX-A23T-01A-11R-A26T-07 CPSF6~CPM fusion "CPSF6," "CPM," chr12~chr12 69633486 69252851 610 +- 2.760522 598 575 22 598 1134 TCGA-DX-A23T-01A-11R-A26T-07 GBF1~CTDSP2 fusion "GBF1," "CTDSP2," chr10~chr12 104005538 58218102 130 +- 2.709334 129 51 78 129 442 TCGA-DX-A23T-01A-11R-A26T-07 GBF1~TRPC6 fusion "GBF1," "TRPC6," chr10~chr11 104005538 101375529 39 +- 2.343371 38 20 18 38 162 TCGA-DX-A23T-01A-11R-A26T-07 GLI3~Nchr6~145588008 intergenic "GLI3," "-," chr7~chr6 42187825 145588008 6 -+ 0.636514 6 2 4 6 712 TCGA-DX-A23T-01A-11R-A26T-07 GLI3~Nchr6~145596300 intergenic "GLI3," "-," chr7~chr6 42187825 145596300 136 -+ 2.627489 116 50 66 116 778 TCGA-DX-A23T-01A-11R-A26T-07 GLI3~PGC fusion "GLI3," "PGC," chr7~chr6 42187825 41704742 9 -- 0.636514 9 6 3 9 74 TCGA-DX-A23T-01A-11R-A26T-07 GNS~RASSF3 fusion "GNS," "RASSF3," chr12~chr12 65133148 65078567 12 -+ 1.236685 11 0 11 11 670 TCGA-DX-A23T-01A-11R-A26T-07 GNS~RASSF3 fusion "GNS," "RASSF3," chr12~chr12 65133161 65078567 21 -+ 1.700178 12 0 12 12 404 TCGA-DX-A23T-01A-11R-A26T-07 GNS~RASSF3 fusion "GNS," "RASSF3," chr12~chr12 65136921 65078567 598 -+ 2.988288 335 20 315 335 756 TCGA-DX-A23T-01A-11R-A26T-07 GS1-410F4.4~OS9 fusion "GS1-410F4.4," "OS9," chr12~chr12 68323167 58109543 10 ++ 0.943348 10 6 4 10 40 TCGA-DX-A23T-01A-11R-A26T-07 GUCY1A2~Nchr8~29401405 intergenic "GUCY1A2," "-," chr11~chr8 106810186 29401405 38 -+ 1.605515 38 35 3 38 188 TCGA-DX-A23T-01A-11R-A26T-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 259 -- 2.026219 259 258 1 259 156 TCGA-DX-A23T-01A-11R-A26T-07 HMGA2~Nchr11~104489945 intergenic "HMGA2," "-," chr12~chr11 66232349 104489945 45 +- 2.082583 42 16 26 42 70 TCGA-DX-A23T-01A-11R-A26T-07 IRAK3~Nchr12~57376933 intergenic "IRAK3," "-," chr12~chr12 66583212 57376933 28 ++ 1.776858 27 26 1 27 318 TCGA-DX-A23T-01A-11R-A26T-07 IRAK3~Nchr12~68855984 intergenic "IRAK3," "-," chr12~chr12 66583212 68855984 8 +- 0.974315 3 0 3 3 28 TCGA-DX-A23T-01A-11R-A26T-07 KDELR2~Nchr7~49639753 intergenic "KDELR2," "-," chr7~chr7 6502584 49639753 5 -- 1.05492 2 2 0 2 2 TCGA-DX-A23T-01A-11R-A26T-07 NDUFA4L2~Nchr12~60260890 intergenic "NDUFA4L2," "-," chr12~chr12 57629532 60260890 8 -+ 0.562335 8 6 2 8 18 TCGA-DX-A23T-01A-11R-A26T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 46 -+ 1.783189 34 0 34 34 52 TCGA-DX-A23T-01A-11R-A26T-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 2 ++ 0.693147 2 0 2 2 34 TCGA-DX-A23T-01A-11R-A26T-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 58 -+ 1.857925 44 33 11 44 152 TCGA-DX-A23T-01A-11R-A26T-07 Nchr8~1287714~RP11-535K1.1 intergenic "-," "RP11-535K1.1," chr8~chr6 1287714 40304856 15 ++ 1.529248 15 14 1 15 130 TCGA-DX-A23T-01A-11R-A26T-07 Nchr8~1287714~RP11-535K1.1 intergenic "-," "RP11-535K1.1," chr8~chr6 1287714 40347021 31 ++ 1.836745 31 9 20 31 120 TCGA-DX-A23T-01A-11R-A26T-07 Nchr8~1660783~RP11-535K1.1 intergenic "-," "RP11-535K1.1," chr8~chr6 1660783 40347021 15 -+ 0.729871 14 3 11 14 28 TCGA-DX-A23T-01A-11R-A26T-07 Nchr8~29495504~Nchr11~106297303 intergenic "-," "-," chr8~chr11 29495504 106297303 18 +- 1.301481 18 18 0 18 24 TCGA-DX-A23T-01A-11R-A26T-07 POLR3D~Nchr8~41781952 intergenic "POLR3D," "-," chr8~chr8 22103191 41781952 25 -+ 1.085245 15 1 14 15 116 TCGA-DX-A23T-01A-11R-A26T-07 PPP3CC~Nchr12~64331625 intergenic "PPP3CC," "-," chr8~chr12 22390531 64331625 3 ++ 0.636514 3 0 3 3 16 TCGA-DX-A23T-01A-11R-A26T-07 PSD3~FGL1 fusion "PSD3," "FGL1," chr8~chr8 18708761 17743080 12 -- 0.867563 12 2 10 12 104 TCGA-DX-A23T-01A-11R-A26T-07 PSD3~FGL1 fusion "PSD3," "FGL1," chr8~chr8 18711608 17743080 55 -- 2.077998 54 13 41 54 386 TCGA-DX-A23T-01A-11R-A26T-07 RASSF3~Nchr11~101084739 intergenic "RASSF3," "-," chr12~chr11 65078674 101084739 7 ++ 1.078992 3 3 0 3 6 TCGA-DX-A23T-01A-11R-A26T-07 RASSF3~Nchr11~101134913 intergenic "RASSF3," "-," chr12~chr11 65078674 101134913 16 ++ 1.370502 16 16 0 16 54 TCGA-DX-A23T-01A-11R-A26T-07 RASSF3~RP11-788M5.3 fusion "RASSF3," "RP11-788M5.3," chr12~chr11 65078674 101071702 84 ++ 2.302535 40 39 1 40 170 TCGA-DX-A23T-01A-11R-A26T-07 RASSF3~RP11-788M5.3 fusion "RASSF3," "RP11-788M5.3," chr12~chr11 65079016 101071702 18 ++ 1.508918 15 15 0 15 170 TCGA-DX-A23T-01A-11R-A26T-07 RASSF3~RP11-788M5.3 fusion "RASSF3," "RP11-788M5.3," chr12~chr11 65078674 101080074 385 ++ 2.865916 259 245 14 259 532 TCGA-DX-A23T-01A-11R-A26T-07 RASSF3~RP11-788M5.3 fusion "RASSF3," "RP11-788M5.3," chr12~chr11 65079016 101080074 9 ++ 1.060857 7 3 4 7 552 TCGA-DX-A23T-01A-11R-A26T-07 RFX3~Nchr11~106302834 intergenic "RFX3," "-," chr9~chr11 3330259 106302834 41 -- 1.434517 36 18 18 36 62 TCGA-DX-A23T-01A-11R-A26T-07 RP11-745O10.4~Nchr8~17956890 intergenic "TMBIM4,RP11-745O10.4,TMBIM4," "-," chr12~chr8 66563635 17956890 14 -- 1.27209 13 0 13 13 22 TCGA-DX-A23T-01A-11R-A26T-07 TAB2~Nchr11~101223099 intergenic "TAB2," "-," chr6~chr11 149700654 101223099 128 +- 2.189252 111 57 51 111 318 TCGA-DX-A23T-01A-11R-A26T-07 TAB2~Nchr11~101223151 intergenic "TAB2," "-," chr6~chr11 149700654 101223151 12 +- 0.562335 12 12 0 12 322 TCGA-DX-A23T-01A-11R-A26T-07 TBPL1~RP11-535K1.1 fusion "TBPL1," "RP11-535K1.1," chr6~chr6 134304018 40347021 28 ++ 2.038379 28 5 23 28 62 TCGA-DX-A23T-01A-11R-A26T-07 TRPC6~Nchr12~57376933 intergenic "TRPC6," "-," chr11~chr12 101353680 57376933 19 -+ 1.367738 19 3 16 19 134 TCGA-DX-A23T-01A-11R-A26T-07 TRPC6~Nchr12~68855984 intergenic "TRPC6," "-," chr11~chr12 101353680 68855984 5 -- 0.673012 5 2 3 5 34 TCGA-DX-A23T-01A-11R-A26T-07 UST~BIRC3 fusion "UST," "BIRC3," chr6~chr11 149068813 102207491 6 ++ 1.011404 5 2 3 5 40 TCGA-DX-A23T-01A-11R-A26T-07 UTRN~HEBP2 fusion "UTRN," "HEBP2," chr6~chr6 144613043 138726282 61 ++ 2.169075 60 25 35 60 142 TCGA-DX-A23T-01A-11R-A26T-07 YAP1~RNF130 fusion "YAP1," "RNF130," chr11~chr5 101985125 179467647 45 +- 1.639438 45 25 20 45 132 TCGA-DX-A23T-01A-11R-A26T-07 YEATS4~Nchr21~23231306 intergenic "YEATS4," "-," chr12~chr21 69756687 23231306 17 ++ 1.00274 8 8 0 8 56 TCGA-DX-A23T-01A-11R-A26T-07 YEATS4~Nchr21~23231306 intergenic "YEATS4," "-," chr12~chr21 69759664 23231306 52 ++ 1.955841 52 52 0 52 162 TCGA-DX-A23T-01A-11R-A26T-07 YEATS4~RP11-335O4.1 fusion "YEATS4," "RP11-335O4.1," chr12~chr12 69759664 67965085 8 +- 0.661563 8 8 0 8 176 TCGA-DX-A23T-01A-11R-A26T-07 YEATS4~RP11-335O4.1 fusion "YEATS4," "RP11-335O4.1," chr12~chr12 69759479 67965085 13 +- 0.690186 6 6 0 6 92 TCGA-DX-A23T-01A-11R-A26T-07 YEATS4~RP11-335O4.1 fusion "YEATS4," "RP11-335O4.1," chr12~chr12 69756687 67965085 11 +- 1.263654 11 9 2 11 84 TCGA-DX-A23T-01A-11R-A26T-07 YEATS4~RP11-335O4.1 fusion "YEATS4," "RP11-335O4.1," chr12~chr12 69756687 67981086 15 +- 1.268094 12 7 5 12 76 TCGA-DX-A23T-01A-11R-A26T-07 YEATS4~RP11-335O4.1 fusion "YEATS4," "RP11-335O4.1," chr12~chr12 69759664 67981086 33 +- 1.494257 33 8 25 33 118 TCGA-DX-A1L3-01A-11R-A24X-07 ATXN1~DNM3 fusion "ATXN1," "DNM3," chr6~chr1 16486203 172348158 101 -+ 2.831243 71 43 25 71 228 TCGA-DX-A1L3-01A-11R-A24X-07 ATXN1~SLC24A1 fusion "ATXN1," "SLC24A1," chr6~chr15 16486203 65911218 56 -+ 2.806876 42 25 15 42 228 TCGA-DX-A1L3-01A-11R-A24X-07 ATXN1~SLC24A1 fusion "ATXN1," "SLC24A1," chr6~chr15 16486203 65916293 17 -+ 2.068513 16 9 7 16 142 TCGA-DX-A1L3-01A-11R-A24X-07 AVEN~Nchr12~74336041 intergenic "AVEN," "-," chr15~chr12 34295233 74336041 29 -- 2.354715 18 8 10 18 84 TCGA-DX-A1L3-01A-11R-A24X-07 AVEN~Nchr12~74442360 intergenic "AVEN," "-," chr15~chr12 34295233 74442360 7 -- 1.549826 7 2 5 7 36 TCGA-DX-A1L3-01A-11R-A24X-07 C15orf44~NchrX~131089504 intergenic "C15orf44," "-," chr15~chrX 65903436 131089504 2 -+ 0.693147 2 1 1 2 2 TCGA-DX-A1L3-01A-11R-A24X-07 C1orf9~C12orf28 fusion "C1orf9," "C12orf28,AC025263.3," chr1~chr12 172502637 70219103 2 ++ 0.693147 2 1 1 2 18 TCGA-DX-A1L3-01A-11R-A24X-07 C1orf9~C12orf28 fusion "C1orf9," "AC025263.3,C12orf28," chr1~chr12 172502637 70249060 17 ++ 2.200828 16 8 8 16 48 TCGA-DX-A1L3-01A-11R-A24X-07 C1orf9~CDH18 fusion "C1orf9," "CDH18," chr1~chr5 172502637 19981283 8 +- 1.494175 7 3 4 7 176 TCGA-DX-A1L3-01A-11R-A24X-07 C1orf9~CDH18 fusion "C1orf9," "CDH18," chr1~chr5 172502637 19981287 67 +- 2.617697 33 15 18 33 176 TCGA-DX-A1L3-01A-11R-A24X-07 C1orf9~Nchr12~89015224 intergenic "C1orf9," "-," chr1~chr12 172560211 89015224 3 +- 1.098612 3 1 2 3 4 TCGA-DX-A1L3-01A-11R-A24X-07 C1orf9~Nchr1~165129020 intergenic "C1orf9," "-," chr1~chr1 172560211 165129020 8 +- 1.386294 8 3 5 8 56 TCGA-DX-A1L3-01A-11R-A24X-07 C1orf9~Nchr1~165143381 intergenic "C1orf9," "-," chr1~chr1 172560211 165143381 59 +- 3.025356 81 22 32 81 244 TCGA-DX-A1L3-01A-11R-A24X-07 C1orf9~Nchr1~165147909 intergenic "C1orf9," "-," chr1~chr1 172560211 165147909 8 +- 1.470808 10 0 8 10 210 TCGA-DX-A1L3-01A-11R-A24X-07 C1orf9~RP11-362K2.2 fusion "C1orf9," "RP11-362K2.2," chr1~chr12 172502637 59206196 18 ++ 1.750158 18 4 14 18 74 TCGA-DX-A1L3-01A-11R-A24X-07 CDH18~RP11-362K2.2 fusion "CDH18," "RP11-362K2.2," chr5~chr12 19981169 59195042 3 -+ 0.636514 2 2 0 2 88 TCGA-DX-A1L3-01A-11R-A24X-07 CDH18~RP11-362K2.2 fusion "CDH18," "RP11-362K2.2," chr5~chr12 19981169 59199723 22 -+ 2.176732 8 3 5 8 188 TCGA-DX-A1L3-01A-11R-A24X-07 CDH18~RP11-362K2.2 fusion "CDH18," "RP11-362K2.2," chr5~chr12 19981169 59206196 39 -+ 2.506194 28 25 3 28 184 TCGA-DX-A1L3-01A-11R-A24X-07 CNOT2~CRADD fusion "CNOT2,CNOT2,CNOT2," "CRADD," chr12~chr12 70637260 94243746 54 ++ 2.049986 53 1 52 53 32 TCGA-DX-A1L3-01A-11R-A24X-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266264 189856240 5 -+ 1.05492 4 3 1 4 2 TCGA-DX-A1L3-01A-11R-A24X-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049717 48269241 4 +- 0.693147 3 2 1 3 10 TCGA-DX-A1L3-01A-11R-A24X-07 CTDSP2~RP5-1116C7.1 fusion "CTDSP2," "RP5-1116C7.1," chr12~chr1 58220129 172113577 7 -- 0.410116 7 3 4 7 14 TCGA-DX-A1L3-01A-11R-A24X-07 DNM3~UHRF1 fusion "DNM3," "UHRF1," chr1~chr19 171890961 4941540 19 ++ 1.849996 8 0 8 8 24 TCGA-DX-A1L3-01A-11R-A24X-07 DROSHA~Nchr12~59217482 intergenic "DROSHA," "-," chr5~chr12 31529147 59217482 6 -- 1.56071 4 2 2 4 6 TCGA-DX-A1L3-01A-11R-A24X-07 DSC2~Nchr5~10909809 intergenic "DSC2," "-," chr18~chr5 28681866 10909809 5 -- 0.500402 5 0 5 5 8 TCGA-DX-A1L3-01A-11R-A24X-07 ELK3~DROSHA fusion "ELK3," "DROSHA," chr12~chr5 96641512 31529212 9 +- 1.310784 8 8 0 8 2 TCGA-DX-A1L3-01A-11R-A24X-07 ELK3~KCNC2 fusion "ELK3," "KCNC2,RP11-81K13.1," chr12~chr12 96641512 75434738 6 ++ 1.56071 6 1 5 6 24 TCGA-DX-A1L3-01A-11R-A24X-07 ELK3~Nchr5~10836245 intergenic "ELK3," "-," chr12~chr5 96588483 10836245 12 ++ 1.473502 11 4 7 11 80 TCGA-DX-A1L3-01A-11R-A24X-07 FAM78B~RAB3IP fusion "FAM78B," "RAB3IP,AC025263.3,RAB3IP," chr1~chr12 166135223 70206558 4 -+ 1.039721 4 0 4 4 122 TCGA-DX-A1L3-01A-11R-A24X-07 FAM78B~RAB3IP fusion "FAM78B," "RAB3IP,RAB3IP,AC025263.3," chr1~chr12 166135223 70206744 10 -+ 1.973001 10 0 10 10 134 TCGA-DX-A1L3-01A-11R-A24X-07 FBXL7~CCT5 fusion "FBXL7," "CCT5," chr5~chr5 15616181 10254257 40 ++ 2.460383 29 27 2 29 38 TCGA-DX-A1L3-01A-11R-A24X-07 FBXL7~Nchr5~10197181 intergenic "FBXL7," "-," chr5~chr5 15616181 10197181 21 ++ 2.017364 15 7 8 15 42 TCGA-DX-A1L3-01A-11R-A24X-07 FMO3~RP11-1060G2.1 fusion "FMO3," "RP11-1060G2.1," chr1~chr12 171077362 94289141 5 +- 0.950271 4 3 1 4 24 TCGA-DX-A1L3-01A-11R-A24X-07 FRS2~ATXN1 fusion "FRS2," "ATXN1," chr12~chr6 69864310 16486340 3 +- 0.636514 2 2 0 2 292 TCGA-DX-A1L3-01A-11R-A24X-07 FRS2~ATXN1 fusion "FRS2," "ATXN1," chr12~chr6 69864310 16522919 50 +- 2.673479 35 15 20 35 450 TCGA-DX-A1L3-01A-11R-A24X-07 FRS2~Nchr12~58512500 intergenic "FRS2," "-," chr12~chr12 69864310 58512500 27 +- 1.782833 27 16 11 27 188 TCGA-DX-A1L3-01A-11R-A24X-07 FRS2~Nchr12~85116552 intergenic "FRS2," "-," chr12~chr12 69864310 85116552 37 ++ 2.064838 14 12 2 14 104 TCGA-DX-A1L3-01A-11R-A24X-07 FRS2~Nchr12~89143301 intergenic "FRS2," "-," chr12~chr12 69931763 89143301 9 +- 1.427061 7 4 3 7 38 TCGA-DX-A1L3-01A-11R-A24X-07 FRS2~Nchr12~89143301 intergenic "FRS2," "-," chr12~chr12 69925836 89143301 5 +- 1.332179 4 1 3 4 32 TCGA-DX-A1L3-01A-11R-A24X-07 FRS2~RP11-362K2.2 fusion "FRS2," "RP11-362K2.2," chr12~chr12 69864310 58937907 255 ++ 3.163179 100 0 100 100 34 TCGA-DX-A1L3-01A-11R-A24X-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31237288 31323156 5 -- 1.05492 5 0 5 5 4 TCGA-DX-A1L3-01A-11R-A24X-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238180 31324034 2 -- 0.693147 2 2 0 2 2 TCGA-DX-A1L3-01A-11R-A24X-07 IQCH~CTNND2 fusion "IQCH," "CTNND2," chr15~chr5 67553732 11199773 22 +- 2.110573 14 11 3 14 16 TCGA-DX-A1L3-01A-11R-A24X-07 JARID2~DNM3 fusion "JARID2," "DNM3," chr6~chr1 15246815 171890888 11 ++ 1.46814 6 0 6 6 34 TCGA-DX-A1L3-01A-11R-A24X-07 KCNC2~RAB3IP fusion "KCNC2," "RAB3IP,AC025263.3,RAB3IP," chr12~chr12 75517790 70206558 3 -+ 0.636514 3 3 0 3 32 TCGA-DX-A1L3-01A-11R-A24X-07 KIFAP3~C1orf112 fusion "KIFAP3," "C1orf112," chr1~chr1 169985603 169806068 3 -+ 0.636514 3 1 2 3 50 TCGA-DX-A1L3-01A-11R-A24X-07 LRIG3~Nchr12~58284096 intergenic "LRIG3," "-," chr12~chr12 59313781 58284096 1724 -+ 3.330487 1691 1256 431 1691 5524 TCGA-DX-A1L3-01A-11R-A24X-07 LRIG3~Nchr12~58284096 intergenic "LRIG3," "-," chr12~chr12 59313576 58284096 3 -+ 0.636514 3 3 0 3 18 TCGA-DX-A1L3-01A-11R-A24X-07 LRIG3~Nchr12~58284096 intergenic "LRIG3," "-," chr12~chr12 59313208 58284096 96 -+ 2.848601 94 78 16 94 330 TCGA-DX-A1L3-01A-11R-A24X-07 MAP2K5~C12orf28 fusion "MAP2K5," "C12orf28," chr15~chr12 67893087 70272808 43 ++ 2.466727 36 26 10 36 116 TCGA-DX-A1L3-01A-11R-A24X-07 MDM2~FMO6P fusion "MDM2," "FMO6P," chr12~chr1 69229764 171112320 48 ++ 2.350663 45 17 27 45 142 TCGA-DX-A1L3-01A-11R-A24X-07 MDM2~Nchr12~85155133 intergenic "MDM2," "-," chr12~chr12 69202271 85155133 10 +- 1.834372 8 5 3 8 82 TCGA-DX-A1L3-01A-11R-A24X-07 NTN4~KIFAP3 fusion "NTN4," "KIFAP3," chr12~chr1 96180717 169930376 14 -- 1.932807 14 11 3 14 76 TCGA-DX-A1L3-01A-11R-A24X-07 NTN4~SNRPF fusion "NTN4," "SNRPF," chr12~chr12 96180717 96254946 3 -+ 1.098612 3 2 1 3 18 TCGA-DX-A1L3-01A-11R-A24X-07 NUP107~Nchr12~73756853 intergenic "NUP107," "-," chr12~chr12 69096564 73756853 19 ++ 2.059229 18 7 11 18 60 TCGA-DX-A1L3-01A-11R-A24X-07 NUP155~RP11-536G4.1 fusion "NUP155," "RP11-536G4.1," chr5~chr12 37326003 96216867 24 -+ 2.427144 23 19 4 23 178 TCGA-DX-A1L3-01A-11R-A24X-07 Nchr12~104659086~Nchr12~104659189 intergenic "-," "-," chr12~chr12 104659086 104659189 4 -- 0.693147 4 4 0 4 14 TCGA-DX-A1L3-01A-11R-A24X-07 Nchr12~47009717~CRADD intergenic "-," "CRADD," chr12~chr12 47009717 94131976 4 ++ 1.039721 3 1 2 3 18 TCGA-DX-A1L3-01A-11R-A24X-07 Nchr12~47009717~CRADD intergenic "-," "CRADD," chr12~chr12 47009717 94243746 154 ++ 3.038223 132 63 69 132 742 TCGA-DX-A1L3-01A-11R-A24X-07 Nchr12~47009717~RP11-887P2.5 intergenic "-," "RP11-887P2.5," chr12~chr12 47009717 94106682 94 ++ 2.873888 84 57 27 84 322 TCGA-DX-A1L3-01A-11R-A24X-07 Nchr12~47009739~CRADD intergenic "-," "CRADD," chr12~chr12 47009739 94243746 16 ++ 1.721402 14 11 3 14 812 TCGA-DX-A1L3-01A-11R-A24X-07 Nchr12~47009739~RP11-887P2.5 intergenic "-," "RP11-887P2.5," chr12~chr12 47009739 94106682 15 ++ 1.337861 15 12 3 15 366 TCGA-DX-A1L3-01A-11R-A24X-07 Nchr12~69409415~RAB3IP intergenic "-," "RAB3IP," chr12~chr12 69409415 70149164 91 ++ 2.544179 74 0 74 74 148 TCGA-DX-A1L3-01A-11R-A24X-07 Nchr12~74335897~SYT1 intergenic "-," "SYT1," chr12~chr12 74335897 79701879 25 -- 2.269615 22 2 18 22 56 TCGA-DX-A1L3-01A-11R-A24X-07 Nchr12~85116647~ATXN1 intergenic "-," "ATXN1," chr12~chr6 85116647 16522919 101 +- 2.539747 36 0 36 36 66 TCGA-DX-A1L3-01A-11R-A24X-07 Nchr19~7455462~Nchr12~96559209 intergenic "-," "-," chr19~chr12 7455462 96559209 45 -- 2.46986 39 28 11 39 180 TCGA-DX-A1L3-01A-11R-A24X-07 Nchr1~166134976~RAB3IP intergenic "-," "RAB3IP,RAB3IP,AC025263.3," chr1~chr12 166134976 70206744 6 -+ 1.011404 6 0 6 6 2 TCGA-DX-A1L3-01A-11R-A24X-07 Nchr2~154265755~Nchr2~154589282 intergenic "-," "-," chr2~chr2 154265755 154589282 9 ++ 1.310784 4 4 0 4 2 TCGA-DX-A1L3-01A-11R-A24X-07 Nchr6~29856480~HLA-B intergenic "-," "HLA-B," chr6~chr6 29856480 31324034 4 -- 1.039721 2 0 2 2 56 TCGA-DX-A1L3-01A-11R-A24X-07 PBX1~ELK3 fusion "PBX1," "RP11-394J1.2,ELK3," chr1~chr12 164790863 96617343 2 ++ 0.693147 2 0 2 2 2 TCGA-DX-A1L3-01A-11R-A24X-07 PDZD2~KIFAP3 fusion "PDZD2," "KIFAP3," chr5~chr1 31855274 169930376 5 +- 1.05492 5 2 3 5 16 TCGA-DX-A1L3-01A-11R-A24X-07 PLEKHA5~CPM fusion "PLEKHA5," "CPM," chr12~chr12 19475601 69351047 58 +- 2.635678 57 24 33 57 188 TCGA-DX-A1L3-01A-11R-A24X-07 PLEKHA5~CPM fusion "PLEKHA5," "CPM," chr12~chr12 19475601 69351096 6 +- 0.867563 3 3 0 3 232 TCGA-DX-A1L3-01A-11R-A24X-07 PLEKHA5~CPM fusion "PLEKHA5," "CPM," chr12~chr12 19475601 69351458 79 +- 2.606516 80 30 49 80 372 TCGA-DX-A1L3-01A-11R-A24X-07 PLEKHA5~CPM fusion "PLEKHA5," "CPM," chr12~chr12 19480147 69356132 4 +- 1.039721 3 2 1 3 8 TCGA-DX-A1L3-01A-11R-A24X-07 PLEKHA5~RP11-620J15.3 fusion "PLEKHA5," "RP11-620J15.3," chr12~chr12 19285384 58325520 4 +- 1.386294 4 3 1 4 710 TCGA-DX-A1L3-01A-11R-A24X-07 PLEKHA5~RP11-620J15.3 fusion "PLEKHA5," "RP11-620J15.3," chr12~chr12 19285384 58329336 601 +- 3.164532 571 330 238 571 1542 TCGA-DX-A1L3-01A-11R-A24X-07 POU2F1~Nchr12~76086772 intergenic "POU2F1," "-," chr1~chr12 167190195 76086772 11 +- 1.46814 11 0 11 11 4 TCGA-DX-A1L3-01A-11R-A24X-07 POU2F1~RP11-114H23.1 fusion "POU2F1," "RP11-114H23.1," chr1~chr12 167190195 76057586 4 +- 1.039721 3 0 3 3 2 TCGA-DX-A1L3-01A-11R-A24X-07 POU2F1~RP11-114H23.2 fusion "POU2F1," "RP11-114H23.2," chr1~chr12 167190195 76088550 4 +- 1.039721 3 0 3 3 98 TCGA-DX-A1L3-01A-11R-A24X-07 POU2F1~RP11-114H23.2 fusion "POU2F1," "RP11-114H23.2," chr1~chr12 167190195 76088727 17 +- 1.843861 17 0 17 17 164 TCGA-DX-A1L3-01A-11R-A24X-07 POU2F1~RP11-114H23.2 fusion "POU2F1," "RP11-114H23.2," chr1~chr12 167190195 76088755 87 +- 2.921555 85 0 85 85 186 TCGA-DX-A1L3-01A-11R-A24X-07 RAB3IP~KCNC2 fusion "RAB3IP," "KCNC2," chr12~chr12 70150443 75445097 6 +- 1.242453 3 1 2 3 32 TCGA-DX-A1L3-01A-11R-A24X-07 RAB3IP~Nchr12~85992326 intergenic "RAB3IP," "-," chr12~chr12 70150443 85992326 12 +- 1.979205 10 2 8 10 40 TCGA-DX-A1L3-01A-11R-A24X-07 SLC35E3~C12orf28 fusion "SLC35E3," "C12orf28," chr12~chr12 69145970 70345893 2 ++ 0.693147 2 1 1 2 18 TCGA-DX-A1L3-01A-11R-A24X-07 SLC6A18~Nchr12~69549948 intergenic "SLC6A18," "-," chr5~chr12 1240607 69549948 8 -- 1.494175 5 5 0 5 26 TCGA-DX-A1L3-01A-11R-A24X-07 SYT1~Nchr12~74300720 intergenic "SYT1," "-," chr12~chr12 79693331 74300720 12 ++ 1.632631 12 5 7 12 38 TCGA-DX-A1L3-01A-11R-A24X-07 SYT1~Nchr12~74312978 intergenic "SYT1," "-," chr12~chr12 79693331 74312978 5 ++ 1.332179 5 2 3 5 22 TCGA-DX-A1L3-01A-11R-A24X-07 TBC1D30~Nchr18~25912279 intergenic "TBC1D30," "-," chr12~chr18 65179825 25912279 18 +- 2.183187 18 13 5 18 86 TCGA-DX-A1L3-01A-11R-A24X-07 TBC1D30~SYT1 fusion "TBC1D30," "SYT1," chr12~chr12 65179825 79371579 18 ++ 1.923069 15 15 0 15 52 TCGA-DX-A1L3-01A-11R-A24X-07 TRIO~Nchr12~69463787 intergenic "TRIO," "-," chr5~chr12 14406781 69463787 7 +- 1.475076 6 4 2 6 62 TCGA-DX-A1L3-01A-11R-A24X-07 TRIO~Nchr12~69465962 intergenic "TRIO," "-," chr5~chr12 14406781 69465962 6 +- 0.693147 6 3 3 6 58 TCGA-DX-A1L3-01A-11R-A24X-07 TRIO~TERT fusion "TRIO," "TERT," chr5~chr5 14420130 1282739 74 +- 2.749449 73 41 32 73 280 TCGA-DX-A1L3-01A-11R-A24X-07 ZDHHC17~Nchr12~58284096 intergenic "ZDHHC17," "-," chr12~chr12 77158592 58284096 37 ++ 2.367664 29 11 18 29 136 TCGA-DX-A1L3-01A-11R-A24X-07 ZDHHC17~Nchr12~58284096 intergenic "ZDHHC17," "-," chr12~chr12 77158525 58284096 21 ++ 2.202521 20 11 9 20 102 TCGA-DX-A1L3-01A-11R-A24X-07 ZDHHC17~Nchr12~58284096 intergenic "ZDHHC17," "-," chr12~chr12 77158191 58284096 19 ++ 2.360736 19 16 3 19 9392 TCGA-DX-A1L3-01A-11R-A24X-07 ZDHHC17~Nchr12~58284096 intergenic "ZDHHC17," "-," chr12~chr12 77158109 58284096 2679 ++ 2.909364 2626 2477 142 2626 9356 TCGA-DX-A1L3-01A-11R-A24X-07 ZDHHC17~RAB3IP fusion "ZDHHC17," "RAB3IP," chr12~chr12 77158109 70149164 15 ++ 1.93381 15 11 4 15 128 TCGA-DX-A1L3-01A-11R-A24X-07 ZNF557~Nchr1~165131685 intergenic "ZNF557," "-," chr19~chr1 7070664 165131685 10 ++ 1.834372 7 4 3 7 76 TCGA-DX-A1L3-01A-11R-A24X-07 ZNF557~Nchr1~165148156 intergenic "ZNF557," "-," chr19~chr1 7070664 165148156 7 ++ 1.153742 7 2 5 7 22 TCGA-DX-A1L2-01A-22R-A24X-07 ARHGEF11~CD48 fusion "ARHGEF11," "CD48,CD48," chr1~chr1 157014091 160654979 31 -- 2.480816 31 19 12 31 132 TCGA-DX-A1L2-01A-22R-A24X-07 ARMCX5~NchrX~102188582 intergenic "ARMCX5," "-," chrX~chrX 101860581 102188582 5 +- 0.950271 5 3 2 5 2 TCGA-DX-A1L2-01A-22R-A24X-07 ATG7~Nchr3~14681649 intergenic "ATG7," "-," chr3~chr3 11468400 14681649 5 ++ 0.950271 4 1 3 4 14 TCGA-DX-A1L2-01A-22R-A24X-07 BBS9~Nchr7~33900207 intergenic "BBS9," "-," chr7~chr7 33644587 33900207 4 ++ 1.039721 4 1 3 4 26 TCGA-DX-A1L2-01A-22R-A24X-07 BTD~BCAS3 fusion "BTD," "BCAS3," chr3~chr17 15686438 59445688 5 ++ 1.05492 5 0 5 5 10 TCGA-DX-A1L2-01A-22R-A24X-07 CALU~Nchr1~160501317 intergenic "CALU," "-," chr7~chr1 128379486 160501317 18 ++ 1.796494 16 16 0 16 32 TCGA-DX-A1L2-01A-22R-A24X-07 CALU~Nchr1~164501972 intergenic "CALU," "-," chr7~chr1 128379486 164501972 56 +- 2.360731 18 16 2 18 26 TCGA-DX-A1L2-01A-22R-A24X-07 CCDC136~Nchr1~146854981 intergenic "CCDC136," "-," chr7~chr1 128437237 146854981 3 ++ 1.098612 2 1 1 2 22 TCGA-DX-A1L2-01A-22R-A24X-07 CDH12~ZDHHC11 fusion "CDH12," "ZDHHC11," chr5~chr5 22212607 825366 10 -- 1.366159 10 5 5 10 16 TCGA-DX-A1L2-01A-22R-A24X-07 COPA~Nchr1~164396933 intergenic "COPA," "-," chr1~chr1 160261286 164396933 29 +- 2.353715 28 17 11 28 34 TCGA-DX-A1L2-01A-22R-A24X-07 CRTC2~Nchr1~162458061 intergenic "CRTC2," "-," chr1~chr1 153930821 162458061 17 -- 1.921336 12 4 8 12 26 TCGA-DX-A1L2-01A-22R-A24X-07 DCAF6~Nchr1~164946908 intergenic "DCAF6," "-," chr1~chr1 168014465 164946908 42 +- 2.525885 40 23 17 40 186 TCGA-DX-A1L2-01A-22R-A24X-07 DCAF6~Nchr1~164997494 intergenic "DCAF6," "-," chr1~chr1 168014465 164997494 4 +- 1.039721 4 3 1 4 32 TCGA-DX-A1L2-01A-22R-A24X-07 DNM3~Nchr1~157345682 intergenic "DNM3," "-," chr1~chr1 171956945 157345682 10 ++ 1.227529 7 2 5 7 28 TCGA-DX-A1L2-01A-22R-A24X-07 DNM3~Nchr1~157353091 intergenic "DNM3," "-," chr1~chr1 171956945 157353091 4 ++ 1.039721 3 3 0 3 22 TCGA-DX-A1L2-01A-22R-A24X-07 EXOC7~Nchr3~5871575 intergenic "EXOC7," "-," chr17~chr3 74093877 5871575 14 -- 1.965237 14 7 7 14 36 TCGA-DX-A1L2-01A-22R-A24X-07 FLNC~Nchr7~128552847 intergenic "FLNC," "-," chr7~chr7 128498490 128552847 4 -- 0.693147 4 4 0 4 10 TCGA-DX-A1L2-01A-22R-A24X-07 GATAD2B~GRM8 fusion "GATAD2B," "GRM8," chr1~chr7 153895209 126086320 11 -- 1.972247 11 1 10 11 326 TCGA-DX-A1L2-01A-22R-A24X-07 GATAD2B~GRM8 fusion "GATAD2B," "GRM8," chr1~chr7 153895209 126086426 257 -- 3.086419 259 65 184 259 596 TCGA-DX-A1L2-01A-22R-A24X-07 GPRASP1~NchrX~102195563 intergenic "GPRASP1," "-," chrX~chrX 101906523 102195563 7 +- 1.351784 7 0 7 7 4 TCGA-DX-A1L2-01A-22R-A24X-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 207 -- 2.540618 207 207 0 207 236 TCGA-DX-A1L2-01A-22R-A24X-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32487941 32548633 17 -- 2.200828 6 3 3 6 4 TCGA-DX-A1L2-01A-22R-A24X-07 HP1BP3~ZMYM4 fusion "HP1BP3," "RP4-765A10.2,ZMYM4," chr1~chr1 21103090 35824526 2 -+ 0.693147 2 0 2 2 36 TCGA-DX-A1L2-01A-22R-A24X-07 INPP4A~EEF1E1 fusion "INPP4A," "EEF1E1," chr2~chr6 99193606 8080263 28 +- 2.483974 26 18 8 26 40 TCGA-DX-A1L2-01A-22R-A24X-07 IRF5~Nchr1~146854981 intergenic "IRF5," "-," chr7~chr1 128577888 146854981 6 ++ 1.011404 6 1 5 6 14 TCGA-DX-A1L2-01A-22R-A24X-07 KIAA1797~Nchr4~182397182 intergenic "KIAA1797," "-," chr9~chr4 20976547 182397182 4 +- 1.386294 4 3 1 4 6 TCGA-DX-A1L2-01A-22R-A24X-07 KIAA1797~Nchr4~182397182 intergenic "KIAA1797," "-," chr9~chr4 20978453 182397182 4 +- 1.039721 4 4 0 4 20 TCGA-DX-A1L2-01A-22R-A24X-07 LPCAT1~MED13 fusion "LPCAT1," "MED13," chr5~chr17 1501576 60024378 6 -- 1.011404 5 5 0 5 30 TCGA-DX-A1L2-01A-22R-A24X-07 MKLN1~DNM3 fusion "MKLN1,AC018642.1," "DNM3," chr7~chr1 131012756 171956796 11 ++ 1.720193 4 3 1 4 42 TCGA-DX-A1L2-01A-22R-A24X-07 MKLN1~Nchr1~163955917 intergenic "MKLN1," "-," chr7~chr1 130827700 163955917 7 ++ 0.682908 7 0 7 7 30 TCGA-DX-A1L2-01A-22R-A24X-07 MKLN1~Nchr1~163959217 intergenic "MKLN1," "-," chr7~chr1 130827700 163959217 9 ++ 1.735126 8 2 6 8 76 TCGA-DX-A1L2-01A-22R-A24X-07 MTOR~ZMYM4 fusion "MTOR," "RP4-765A10.2,ZMYM4," chr1~chr1 11217209 35824769 10 -- 1.279854 10 0 10 10 36 TCGA-DX-A1L2-01A-22R-A24X-07 Nchr11~27603245~RPS25 intergenic "-," "RPS25," chr11~chr11 27603245 118889038 9 -- 1.581094 7 2 5 7 80 TCGA-DX-A1L2-01A-22R-A24X-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 26 -+ 2.411006 14 0 14 14 12 TCGA-DX-A1L2-01A-22R-A24X-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 30 -+ 2.580747 28 14 14 28 500 TCGA-DX-A1L2-01A-22R-A24X-07 Nchr1~157372799~FMO2 intergenic "-," "FMO2," chr1~chr1 157372799 171173004 10 ++ 1.748067 9 1 8 9 8 TCGA-DX-A1L2-01A-22R-A24X-07 Nchr1~158520214~FMO3 intergenic "-," "FMO3," chr1~chr1 158520214 171061794 4 ++ 1.039721 4 0 4 4 4 TCGA-DX-A1L2-01A-22R-A24X-07 Nchr1~164501897~GRM8 intergenic "-," "GRM8," chr1~chr7 164501897 126278312 17 -+ 1.773106 8 0 8 8 16 TCGA-DX-A1L2-01A-22R-A24X-07 Nchr1~164501897~SPTA1 intergenic "-," "SPTA1," chr1~chr1 164501897 158604259 20 -+ 2.137793 13 13 0 13 2 TCGA-DX-A1L2-01A-22R-A24X-07 Nchr2~84318969~Nchr2~84110674 intergenic "-," "-," chr2~chr2 84318969 84110674 5 -- 1.332179 5 4 1 5 68 TCGA-DX-A1L2-01A-22R-A24X-07 Nchr2~84318969~Nchr2~84117899 intergenic "-," "-," chr2~chr2 84318969 84117899 6 -- 1.329661 6 5 1 6 68 TCGA-DX-A1L2-01A-22R-A24X-07 Nchr5~25964059~FAM19A5 intergenic "-," "FAM19A5," chr5~chr22 25964059 49042409 4 ++ 1.039721 3 1 2 3 8 TCGA-DX-A1L2-01A-22R-A24X-07 Nchr7~128173784~Nchr7~113482925 intergenic "-," "-," chr7~chr7 128173784 113482925 10 ++ 1.470808 6 6 0 6 12 TCGA-DX-A1L2-01A-22R-A24X-07 Nchr7~128512630~ARHGAP30 intergenic "-," "ARHGAP30," chr7~chr1 128512630 161019479 7 -- 1.351784 7 3 4 7 12 TCGA-DX-A1L2-01A-22R-A24X-07 Nchr7~130737184~C1orf61 intergenic "-," "C1orf61," chr7~chr1 130737184 156374393 76 -- 2.695662 64 50 14 64 278 TCGA-DX-A1L2-01A-22R-A24X-07 Nchr7~130737184~C1orf61 intergenic "-," "C1orf61," chr7~chr1 130737184 156384545 25 -- 2.532525 22 20 2 22 280 TCGA-DX-A1L2-01A-22R-A24X-07 Nchr7~130737184~C1orf61 intergenic "-," "C1orf61," chr7~chr1 130737184 156399340 72 -- 2.759601 58 33 25 58 400 TCGA-DX-A1L2-01A-22R-A24X-07 Nchr7~130737184~C1orf61 intergenic "-," "C1orf61," chr7~chr1 130737184 156399911 42 -- 2.68352 37 27 10 37 206 TCGA-DX-A1L2-01A-22R-A24X-07 Nchr7~130737184~CCT3 intergenic "-," "CCT3," chr7~chr1 130737184 156305679 42 -- 2.396622 36 31 5 36 52 TCGA-DX-A1L2-01A-22R-A24X-07 Nchr7~130737184~FMO3 intergenic "-," "FMO3," chr7~chr1 130737184 171061794 45 -+ 2.680138 30 14 16 30 200 TCGA-DX-A1L2-01A-22R-A24X-07 Nchr7~130737184~FMO3 intergenic "-," "FMO3," chr7~chr1 130737184 171072926 19 -+ 2.692311 14 9 4 14 104 TCGA-DX-A1L2-01A-22R-A24X-07 Nchr7~130737184~FMO3 intergenic "-," "FMO3," chr7~chr1 130737184 171076816 9 -+ 1.273028 8 5 3 8 44 TCGA-DX-A1L2-01A-22R-A24X-07 Nchr7~130737184~Nchr1~158520165 intergenic "-," "-," chr7~chr1 130737184 158520165 4 -+ 1.039721 2 2 0 2 34 TCGA-DX-A1L2-01A-22R-A24X-07 Nchr7~130737184~Nchr1~158556546 intergenic "-," "-," chr7~chr1 130737184 158556546 15 -+ 1.617053 9 7 2 9 44 TCGA-DX-A1L2-01A-22R-A24X-07 Nchr7~130737184~OR10Z1 intergenic "-," "OR10Z1," chr7~chr1 130737184 158565786 13 -+ 1.524707 9 1 8 9 36 TCGA-DX-A1L2-01A-22R-A24X-07 Nchr7~130792479~C1orf61 intergenic "-," "C1orf61," chr7~chr1 130792479 156374393 2 -- 0.693147 2 2 0 2 56 TCGA-DX-A1L2-01A-22R-A24X-07 Nchr7~130792479~C1orf61 intergenic "-," "C1orf61," chr7~chr1 130792479 156399911 7 -- 0.59827 7 7 0 7 80 TCGA-DX-A1L2-01A-22R-A24X-07 Nchr7~130792479~FMO3 intergenic "-," "FMO3," chr7~chr1 130792479 171061794 5 -+ 1.332179 5 1 4 5 44 TCGA-DX-A1L2-01A-22R-A24X-07 OR10Z1~C1orf129 fusion "OR10Z1," "C1orf129," chr1~chr1 158567840 171031273 3 ++ 0.636514 3 3 0 3 6 TCGA-DX-A1L2-01A-22R-A24X-07 OR10Z1~C1orf129 fusion "OR10Z1," "C1orf129," chr1~chr1 158566358 171031273 7 ++ 1.475076 7 3 4 7 46 TCGA-DX-A1L2-01A-22R-A24X-07 OR10Z1~COPG2 fusion "OR10Z1," "COPG2," chr1~chr7 158575191 130337788 5 +- 1.332179 5 4 1 5 26 TCGA-DX-A1L2-01A-22R-A24X-07 OR10Z1~FMO3 fusion "OR10Z1," "FMO3," chr1~chr1 158566358 171061794 6 ++ 1.242453 6 0 6 6 20 TCGA-DX-A1L2-01A-22R-A24X-07 POU2F1~ATP6V1F fusion "POU2F1," "ATP6V1F," chr1~chr7 167190195 128505431 6 ++ 1.56071 4 0 4 4 32 TCGA-DX-A1L2-01A-22R-A24X-07 POU2F1~COPA fusion "POU2F1," "COPA," chr1~chr1 167190195 160261286 6 +- 1.011404 6 6 0 6 16 TCGA-DX-A1L2-01A-22R-A24X-07 PPOX~Nchr1~162458061 intergenic "PPOX," "-," chr1~chr1 161136724 162458061 3 +- 1.098612 1 1 0 1 20 TCGA-DX-A1L2-01A-22R-A24X-07 RBMS3~LPCAT1 fusion "RBMS3," "LPCAT1," chr3~chr5 29323247 1501718 5 +- 1.05492 2 2 0 2 22 TCGA-DX-A1L2-01A-22R-A24X-07 SECTM1~RP11-94H18.1 fusion "SECTM1," "RP11-94H18.1," chr17~chr8 80282458 29692416 14 -- 2.007556 13 1 12 13 32 TCGA-DX-A1L2-01A-22R-A24X-07 SLC38A10~TMEM207 fusion "SLC38A10," "TMEM207," chr17~chr3 79244718 190147520 11 -- 1.672625 11 5 6 11 74 TCGA-DX-A1L2-01A-22R-A24X-07 TANC2~Nchr5~26003360 intergenic "TANC2," "-," chr17~chr5 61151375 26003360 8 +- 1.494175 5 0 5 5 18 TCGA-DX-A1L2-01A-22R-A24X-07 TBCD~Nchr8~13594092 intergenic "TBCD," "-," chr17~chr8 80726442 13594092 2 +- 0.693147 2 0 2 2 36 TCGA-DX-A1L2-01A-22R-A24X-07 TBX19~PCP4L1 fusion "TBX19," "PCP4L1," chr1~chr1 168278115 161253458 7 ++ 1.277034 4 4 0 4 20 TCGA-DX-A1L2-01A-22R-A24X-07 TGFBR2~Nchr3~14263828 intergenic "TGFBR2," "-," chr3~chr3 30648469 14263828 16 +- 1.960095 15 10 5 15 38 TCGA-DX-A1L2-01A-22R-A24X-07 TGFBR2~Nchr3~14264359 intergenic "TGFBR2," "-," chr3~chr3 30648469 14264359 12 +- 1.767195 11 6 3 11 36 TCGA-DX-A1L2-01A-22R-A24X-07 TGFBR2~XPC fusion "TGFBR2," "XPC," chr3~chr3 30648469 14214562 79 +- 2.9628 76 63 13 76 196 TCGA-DX-A1L2-01A-22R-A24X-07 TPST1~GS1-124K5.4 fusion "TPST1," "GS1-124K5.4," chr7~chr7 65751696 65960242 4 ++ 0.562335 4 3 1 4 12 TCGA-DX-A1L2-01A-22R-A24X-07 UCK2~TBX19 fusion "UCK2," "TBX19," chr1~chr1 165797169 168277980 7 ++ 1.004242 3 3 0 3 6 TCGA-DX-A1L2-01A-22R-A24X-07 UHMK1~PEX19 fusion "UHMK1," "DCAF8,PEX19," chr1~chr1 162492435 160201197 10 +- 1.313834 10 3 7 10 62 TCGA-DX-A1L2-01A-22R-A24X-07 USF1~Nchr1~146854981 intergenic "USF1," "-," chr1~chr1 161015648 146854981 4 -+ 1.039721 4 2 2 4 42 TCGA-DX-A1L2-01A-22R-A24X-07 USP15~STAT6 fusion "USP15," "STAT6," chr12~chr12 62654284 57502082 2 +- 0.693147 2 2 0 2 14 TCGA-DX-A1L1-01A-11R-A24X-07 ABI1~Nchr10~27656348 intergenic "ABI1," "-," chr10~chr10 27112067 27656348 4 -+ 1.039721 4 0 4 4 6 TCGA-DX-A1L1-01A-11R-A24X-07 ALPK1~Nchr4~115203687 intergenic "ALPK1," "-," chr4~chr4 113303708 115203687 4 +- 1.039721 4 3 1 4 2 TCGA-DX-A1L1-01A-11R-A24X-07 ANKRD33B~Nchr14~45799116 intergenic "ANKRD33B," "-," chr5~chr14 10564945 45799116 17 +- 2.170048 16 12 4 16 28 TCGA-DX-A1L1-01A-11R-A24X-07 ATRX~NchrX~75878709 intergenic "ATRX," "-," chrX~chrX 76812922 75878709 3 -- 1.098612 3 0 3 3 6 TCGA-DX-A1L1-01A-11R-A24X-07 AUTS2~SEMA3A fusion "AUTS2," "SEMA3A," chr7~chr7 70163606 83689874 4 +- 1.386294 4 3 1 4 38 TCGA-DX-A1L1-01A-11R-A24X-07 CANX~TBC1D9B fusion "CANX," "TBC1D9B," chr5~chr5 179126103 179331812 6 +- 1.329661 6 0 6 6 8 TCGA-DX-A1L1-01A-11R-A24X-07 CYP20A1~Nchr2~214531132 intergenic "CYP20A1," "-," chr2~chr2 204110618 214531132 20 +- 2.085468 20 11 9 20 110 TCGA-DX-A1L1-01A-11R-A24X-07 CYP20A1~Nchr2~214531132 intergenic "CYP20A1," "-," chr2~chr2 204111644 214531132 19 +- 1.840341 19 10 9 19 88 TCGA-DX-A1L1-01A-11R-A24X-07 CYP20A1~Nchr2~214531132 intergenic "CYP20A1," "-," chr2~chr2 204103857 214531132 5 +- 1.332179 5 0 5 5 86 TCGA-DX-A1L1-01A-11R-A24X-07 EDF1~Nchr9~139760751 intergenic "EDF1," "-," chr9~chr9 139758307 139760751 5 +- 1.332179 5 5 0 5 44 TCGA-DX-A1L1-01A-11R-A24X-07 FGF2~FREM3 fusion "FGF2," "FREM3," chr4~chr4 123748507 144548913 29 +- 2.87122 27 2 25 27 84 TCGA-DX-A1L1-01A-11R-A24X-07 GIGYF2~EEF1B2 fusion "GIGYF2," "EEF1B2," chr2~chr2 233594854 207024743 6 ++ 1.791759 3 3 0 3 4 TCGA-DX-A1L1-01A-11R-A24X-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 540 -- 2.212301 541 540 0 541 408 TCGA-DX-A1L1-01A-11R-A24X-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 362 -- 2.294983 379 2 358 379 238 TCGA-DX-A1L1-01A-11R-A24X-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 1987 -- 2.720011 1119 315 784 1119 12 TCGA-DX-A1L1-01A-11R-A24X-07 HLA-E~HLA-C fusion "HLA-E," "HLA-C," chr6~chr6 30460360 31236950 2 +- 0.693147 1 1 0 1 8 TCGA-DX-A1L1-01A-11R-A24X-07 IGHJ6~IGHG2 fusion "IGHJ6," "IGHG2," chr14~chr14 106329408 106110440 3 -- 1.098612 2 2 0 2 2 TCGA-DX-A1L1-01A-11R-A24X-07 IGHV3-9~IGHG1 fusion "IGHV3-9," "IGHG1," chr14~chr14 106552684 106209407 3 -- 1.098612 3 2 1 3 10 TCGA-DX-A1L1-01A-11R-A24X-07 KDM4C~RP11-370B11.3 fusion "KDM4C," "RP11-370B11.3," chr9~chr9 6893232 22767174 2 ++ 0.693147 2 0 2 2 14 TCGA-DX-A1L1-01A-11R-A24X-07 NUB1~Nchr7~159000903 intergenic "NUB1," "-," chr7~chr7 151057333 159000903 4 ++ 1.386294 4 2 2 4 38 TCGA-DX-A1L1-01A-11R-A24X-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 45 -+ 2.242833 17 0 17 17 16 TCGA-DX-A1L1-01A-11R-A24X-07 Nchr14~45066112~Nchr14~44862941 intergenic "-," "-," chr14~chr14 45066112 44862941 3 -- 1.098612 1 1 0 1 10 TCGA-DX-A1L1-01A-11R-A24X-07 Nchr16~69790871~Nchr16~69790950 intergenic "-," "-," chr16~chr16 69790871 69790950 5 -- 0.950271 5 3 2 5 2 TCGA-DX-A1L1-01A-11R-A24X-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151282 6 -- 0.867563 5 3 2 5 18 TCGA-DX-A1L1-01A-11R-A24X-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 6 -- 1.242453 4 1 3 4 18 TCGA-DX-A1L1-01A-11R-A24X-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 65 -+ 2.919661 59 28 27 59 418 TCGA-DX-A1L1-01A-11R-A24X-07 Nchr1~171639784~Nchr1~171639676 intergenic "-," "-," chr1~chr1 171639784 171639676 2 ++ 0.693147 2 2 0 2 14 TCGA-DX-A1L1-01A-11R-A24X-07 Nchr6~29856480~HLA-B intergenic "-," "HLA-B," chr6~chr6 29856480 31324034 5 -- 1.609438 2 2 0 2 8 TCGA-DX-A1L1-01A-11R-A24X-07 Nchr7~140912504~Nchr7~141137408 intergenic "-," "-," chr7~chr7 140912504 141137408 11 ++ 1.84622 8 3 5 8 8 TCGA-DX-A1L1-01A-11R-A24X-07 SIK3~Nchr11~123211189 intergenic "SIK3," "-," chr11~chr11 116746090 123211189 3 -- 0.636514 3 1 2 3 6 TCGA-DX-A1L1-01A-11R-A24X-07 TMEM50A~Nchr10~54891870 intergenic "TMEM50A," "-," chr1~chr10 25669564 54891870 3 +- 0.636514 3 3 0 3 10 TCGA-DX-A1KY-01A-11R-A24X-07 ABCF2~WDR86 fusion "ABCF2," "WDR86," chr7~chr7 150911965 151093282 4 -- 1.039721 4 4 0 4 60 TCGA-DX-A1KY-01A-11R-A24X-07 AC069513.3~Nchr3~193565797 intergenic "AC069513.3," "-," chr3~chr3 195435712 193565797 3 ++ 1.098612 2 0 2 2 18 TCGA-DX-A1KY-01A-11R-A24X-07 AC092162.1~Nchr2~174834480 intergenic "AC092162.1," "-," chr2~chr2 177626188 174834480 2 -- 0.693147 1 1 0 1 6 TCGA-DX-A1KY-01A-11R-A24X-07 ARHGAP24~STAC fusion "ARHGAP24," "STAC," chr4~chr3 86396712 36570188 19 ++ 2.305657 19 14 5 19 64 TCGA-DX-A1KY-01A-11R-A24X-07 ARHGAP44~SHMT1 fusion "ARHGAP44," "SHMT1," chr17~chr17 12799828 18259314 7 +- 1.549826 3 0 3 3 4 TCGA-DX-A1KY-01A-11R-A24X-07 ARHGEF2~Nchr1~159140450 intergenic "ARHGEF2," "-," chr1~chr1 155952898 159140450 10 -- 1.886697 9 3 6 9 22 TCGA-DX-A1KY-01A-11R-A24X-07 ARHGEF2~NchrX~37174404 intergenic "ARHGEF2," "-," chr1~chrX 155952898 37174404 2 -- 0.693147 2 0 2 2 4 TCGA-DX-A1KY-01A-11R-A24X-07 ARMC9~PARD3B fusion "ARMC9," "PARD3B," chr2~chr2 232104754 206305094 14 ++ 2.069202 12 5 7 12 22 TCGA-DX-A1KY-01A-11R-A24X-07 ARMC9~PARD3B fusion "ARMC9," "PARD3B," chr2~chr2 232100094 206305094 2 ++ 0.693147 2 1 1 2 22 TCGA-DX-A1KY-01A-11R-A24X-07 ASH1L~SELL fusion "RP11-29H23.1,ASH1L," "SELL," chr1~chr1 155531944 169660943 10 -- 1.834372 10 5 5 10 156 TCGA-DX-A1KY-01A-11R-A24X-07 ASH1L~SELL fusion "RP11-29H23.1,ASH1L," "SELL," chr1~chr1 155531944 169665694 23 -- 2.16665 22 18 3 22 154 TCGA-DX-A1KY-01A-11R-A24X-07 ATG7~Nchr3~28264963 intergenic "ATG7," "-," chr3~chr3 11468400 28264963 13 ++ 1.839297 12 8 4 12 50 TCGA-DX-A1KY-01A-11R-A24X-07 ATG7~Nchr3~28282221 intergenic "ATG7," "-," chr3~chr3 11468400 28282221 16 ++ 2.339372 14 8 6 14 68 TCGA-DX-A1KY-01A-11R-A24X-07 ATP2B2~Nchr3~8540535 intergenic "ATP2B2," "-," chr3~chr3 10491029 8540535 2 -- 0.693147 1 0 1 1 6 TCGA-DX-A1KY-01A-11R-A24X-07 C1orf196~KAZN fusion "C1orf196," "KAZN," chr1~chr1 14507087 14925479 4 ++ 1.039721 2 0 2 2 2 TCGA-DX-A1KY-01A-11R-A24X-07 C1orf9~CXorf21 fusion "C1orf9," "CXorf21," chr1~chrX 172526934 30594983 93 +- 3.111805 92 53 38 92 526 TCGA-DX-A1KY-01A-11R-A24X-07 C7orf70~SCGB1A1 fusion "C7orf70," "CTD-2531D15.4,SCGB1A1," chr7~chr11 6388204 62189693 97 -+ 2.795856 104 58 38 104 418 TCGA-DX-A1KY-01A-11R-A24X-07 CEP350~NchrX~27050215 intergenic "CEP350," "-," chr1~chrX 180023637 27050215 3 ++ 1.098612 3 1 2 3 40 TCGA-DX-A1KY-01A-11R-A24X-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48268777 94047107 2 -+ 0.693147 2 1 1 2 26 TCGA-DX-A1KY-01A-11R-A24X-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271491 94050330 2 -+ 0.693147 1 0 1 1 22 TCGA-DX-A1KY-01A-11R-A24X-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266738 94053648 2 -+ 0.693147 2 1 1 2 64 TCGA-DX-A1KY-01A-11R-A24X-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272408 94055062 2 -+ 0.693147 2 1 1 2 12 TCGA-DX-A1KY-01A-11R-A24X-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271304 94055762 2 -+ 0.693147 2 2 0 2 4 TCGA-DX-A1KY-01A-11R-A24X-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266264 189856240 4 -+ 1.039721 3 3 0 3 2 TCGA-DX-A1KY-01A-11R-A24X-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265891 189868137 5 -+ 1.332179 1 1 0 1 10 TCGA-DX-A1KY-01A-11R-A24X-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94053755 48266371 22 +- 0.845465 19 1 18 19 88 TCGA-DX-A1KY-01A-11R-A24X-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047143 48272416 5 +- 1.332179 3 2 1 3 22 TCGA-DX-A1KY-01A-11R-A24X-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94038135 48272981 2 +- 0.693147 2 1 1 2 22 TCGA-DX-A1KY-01A-11R-A24X-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48273560 9 +- 1.735126 6 1 5 6 122 TCGA-DX-A1KY-01A-11R-A24X-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94053755 48273889 3 +- 1.098612 2 1 1 2 38 TCGA-DX-A1KY-01A-11R-A24X-07 CRK~ABR fusion "CRK," "ABR," chr17~chr17 1340084 1028702 21 -- 2.463281 17 6 11 17 46 TCGA-DX-A1KY-01A-11R-A24X-07 CRK~Nchr17~1133787 intergenic "CRK," "-," chr17~chr17 1339914 1133787 4 -- 1.386294 4 0 4 4 2 TCGA-DX-A1KY-01A-11R-A24X-07 CYB5D2~Nchr9~7962332 intergenic "CYB5D2," "-," chr17~chr9 4058154 7962332 10 +- 1.834372 10 5 5 10 52 TCGA-DX-A1KY-01A-11R-A24X-07 CYB5D2~Nchr9~7964596 intergenic "CYB5D2," "-," chr17~chr9 4058154 7964596 2 +- 0.693147 2 1 1 2 4 TCGA-DX-A1KY-01A-11R-A24X-07 CYB5D2~Nchr9~7987657 intergenic "CYB5D2," "-," chr17~chr9 4058154 7987657 2 +- 0.693147 2 1 1 2 2 TCGA-DX-A1KY-01A-11R-A24X-07 CYB5D2~Nchr9~8019385 intergenic "CYB5D2," "-," chr17~chr9 4058154 8019385 4 +- 1.386294 2 2 0 2 4 TCGA-DX-A1KY-01A-11R-A24X-07 DCAF12~Nchr12~19069319 intergenic "DCAF12," "-," chr9~chr12 34125021 19069319 9 -+ 2.043192 9 3 6 9 20 TCGA-DX-A1KY-01A-11R-A24X-07 DCPS~Nchr2~134520019 intergenic "DCPS," "-," chr11~chr2 126176639 134520019 4 +- 1.386294 3 2 1 3 6 TCGA-DX-A1KY-01A-11R-A24X-07 DMD~LIX1L fusion "DMD," "LIX1L," chrX~chr1 31279072 145487304 8 -+ 1.732868 8 3 5 8 12 TCGA-DX-A1KY-01A-11R-A24X-07 FAM190A~Nchr4~96703444 intergenic "FAM190A," "-," chr4~chr4 91389505 96703444 5 ++ 1.609438 4 2 2 4 4 TCGA-DX-A1KY-01A-11R-A24X-07 FAM38B~Nchr14~106750401 intergenic "FAM38B," "-," chr18~chr14 10979533 106750401 10 -- 2.163956 5 5 0 5 30 TCGA-DX-A1KY-01A-11R-A24X-07 FBXW7~Nchr3~86711402 intergenic "FBXW7," "-," chr4~chr3 153249360 86711402 15 -- 2.512659 15 7 7 15 68 TCGA-DX-A1KY-01A-11R-A24X-07 FBXW7~Nchr3~86711420 intergenic "FBXW7," "-," chr4~chr3 153249360 86711420 2 -- 0.693147 2 2 0 2 64 TCGA-DX-A1KY-01A-11R-A24X-07 FHOD3~Nchr18~38244401 intergenic "FHOD3," "-," chr18~chr18 33952707 38244401 6 +- 1.56071 5 2 3 5 14 TCGA-DX-A1KY-01A-11R-A24X-07 FOXP1~RP13-578N3.3 fusion "FOXP1," "RP13-578N3.3," chr3~chr4 71064700 144660128 3 -+ 1.098612 2 1 1 2 10 TCGA-DX-A1KY-01A-11R-A24X-07 FREM3~Nchr3~74158563 intergenic "FREM3," "-," chr4~chr3 144506997 74158563 17 -+ 2.3947 5 1 4 5 2 TCGA-DX-A1KY-01A-11R-A24X-07 FREM3~Nchr3~74215285 intergenic "FREM3," "-," chr4~chr3 144506997 74215285 40 -+ 3.010992 27 16 11 27 114 TCGA-DX-A1KY-01A-11R-A24X-07 GALT~WDR72 fusion "GALT," "WDR72," chr9~chr15 34649561 53889471 6 +- 1.791759 5 1 4 5 10 TCGA-DX-A1KY-01A-11R-A24X-07 GALT~WDR72 fusion "GALT," "WDR72," chr9~chr15 34648453 53889471 6 +- 1.791759 6 0 6 6 16 TCGA-DX-A1KY-01A-11R-A24X-07 GOLGA4~Nchr4~158529390 intergenic "GOLGA4," "-," chr3~chr4 37285113 158529390 2 +- 0.693147 1 1 0 1 10 TCGA-DX-A1KY-01A-11R-A24X-07 GOLGA4~Nchr7~153236096 intergenic "GOLGA4," "-," chr3~chr7 37285113 153236096 19 +- 2.479122 18 9 9 18 74 TCGA-DX-A1KY-01A-11R-A24X-07 GOLGA4~Nchr7~153276251 intergenic "GOLGA4," "-," chr3~chr7 37285113 153276251 3 +- 1.098612 3 2 1 3 120 TCGA-DX-A1KY-01A-11R-A24X-07 GOLGA4~Nchr7~153276373 intergenic "GOLGA4," "-," chr3~chr7 37285113 153276373 12 +- 2.253858 12 3 9 12 190 TCGA-DX-A1KY-01A-11R-A24X-07 GPD1L~Nchr3~30566195 intergenic "GPD1L," "-," chr3~chr3 32148250 30566195 7 ++ 1.747868 6 6 0 6 36 TCGA-DX-A1KY-01A-11R-A24X-07 GRIP1~DAZL fusion "GRIP1," "DAZL," chr12~chr3 66770797 16633655 2 -- 0.693147 2 2 0 2 70 TCGA-DX-A1KY-01A-11R-A24X-07 GRIP1~DAZL fusion "GRIP1," "DAZL," chr12~chr3 66770954 16633655 19 -- 2.086769 19 8 11 19 62 TCGA-DX-A1KY-01A-11R-A24X-07 GUCY1B3~PTPRG fusion "GUCY1B3," "PTPRG," chr4~chr3 156681012 61975299 2 ++ 0.693147 2 2 0 2 4 TCGA-DX-A1KY-01A-11R-A24X-07 IGF2~COL3A1 fusion "IGF2,IGF2," "COL3A1," chr11~chr2 2152361 189859456 2 -+ 0.693147 2 2 0 2 2 TCGA-DX-A1KY-01A-11R-A24X-07 IL11RA~WDR72 fusion "IL11RA," "WDR72," chr9~chr15 34657146 53889471 4 +- 1.386294 3 0 3 3 44 TCGA-DX-A1KY-01A-11R-A24X-07 IL11RA~WDR72 fusion "IL11RA," "WDR72," chr9~chr15 34653996 53889471 4 +- 0.562335 1 1 0 1 24 TCGA-DX-A1KY-01A-11R-A24X-07 IL11RA~WDR72 fusion "IL11RA," "WDR72," chr9~chr15 34652230 53889471 10 +- 2.163956 5 5 0 5 4 TCGA-DX-A1KY-01A-11R-A24X-07 IQCA1~GPR1 fusion "IQCA1," "GPR1," chr2~chr2 237395472 207082685 2 -- 0.693147 2 1 1 2 2 TCGA-DX-A1KY-01A-11R-A24X-07 ITGBL1~Nchr13~84547762 intergenic "ITGBL1,RP11-397O8.4," "-," chr13~chr13 102369992 84547762 8 +- 1.494175 4 3 1 4 8 TCGA-DX-A1KY-01A-11R-A24X-07 LIN7A~GRIP1 fusion "LIN7A," "GRIP1," chr12~chr12 81283030 66859202 5 -- 1.332179 5 2 3 5 36 TCGA-DX-A1KY-01A-11R-A24X-07 LMX1A~Nchr1~170629340 intergenic "LMX1A," "-," chr1~chr1 165218645 170629340 2 -+ 0.693147 1 1 0 1 4 TCGA-DX-A1KY-01A-11R-A24X-07 LRBA~Nchr3~42361608 intergenic "LRBA," "-," chr4~chr3 151271144 42361608 2 -+ 0.693147 1 1 0 1 10 TCGA-DX-A1KY-01A-11R-A24X-07 MEF2A~SV2B fusion "MEF2A," "SV2B," chr15~chr15 100230633 91795049 6 ++ 1.791759 5 4 1 5 28 TCGA-DX-A1KY-01A-11R-A24X-07 MEF2A~SV2B fusion "MEF2A," "SV2B," chr15~chr15 100215663 91795049 4 ++ 1.039721 3 2 1 3 12 TCGA-DX-A1KY-01A-11R-A24X-07 MEF2D~NchrX~35075673 intergenic "MEF2D," "-," chr1~chrX 156470278 35075673 19 -+ 2.479122 6 3 3 6 22 TCGA-DX-A1KY-01A-11R-A24X-07 METAP1~Nchr4~101689776 intergenic "METAP1," "-," chr4~chr4 99966461 101689776 6 +- 1.791759 6 4 2 6 16 TCGA-DX-A1KY-01A-11R-A24X-07 METTL13~NUP210L fusion "METTL13," "NUP210L," chr1~chr1 171783163 153984846 3 +- 0.636514 3 2 1 3 22 TCGA-DX-A1KY-01A-11R-A24X-07 METTL8~AC092162.1 fusion "METTL8," "AC092162.1," chr2~chr2 172216932 177626426 2 -- 0.693147 1 1 0 1 8 TCGA-DX-A1KY-01A-11R-A24X-07 MUC20~Nchr3~193565797 intergenic "MUC20,MUC20," "-," chr3~chr3 195453443 193565797 6 ++ 1.329661 6 3 3 6 22 TCGA-DX-A1KY-01A-11R-A24X-07 NALCN~Nchr13~85862214 intergenic "NALCN," "-," chr13~chr13 102047534 85862214 12 -- 1.126929 12 5 7 12 44 TCGA-DX-A1KY-01A-11R-A24X-07 NUF2~PHEX fusion "NUF2," "PHEX," chr1~chrX 163310216 22151640 39 ++ 2.961354 37 25 12 37 140 TCGA-DX-A1KY-01A-11R-A24X-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 103 -+ 2.50385 62 0 57 62 94 TCGA-DX-A1KY-01A-11R-A24X-07 Nchr12~73701238~PTPRQ intergenic "-," "PTPRQ," chr12~chr12 73701238 80865884 21 ++ 2.227438 7 0 7 7 88 TCGA-DX-A1KY-01A-11R-A24X-07 Nchr14~28125649~Nchr14~27791347 intergenic "-," "-," chr14~chr14 28125649 27791347 2 -- 0.693147 2 1 1 2 12 TCGA-DX-A1KY-01A-11R-A24X-07 Nchr15~69992224~SMCHD1 intergenic "-," "SMCHD1," chr15~chr18 69992224 2784448 4 ++ 1.039721 4 0 4 4 4 TCGA-DX-A1KY-01A-11R-A24X-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 7 ++ 1.475076 6 2 4 6 18 TCGA-DX-A1KY-01A-11R-A24X-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 27 ++ 2.621567 24 4 20 24 52 TCGA-DX-A1KY-01A-11R-A24X-07 Nchr18~37331293~Nchr18~37115579 intergenic "-," "-," chr18~chr18 37331293 37115579 4 -- 1.386294 2 1 1 2 12 TCGA-DX-A1KY-01A-11R-A24X-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 3 ++ 1.098612 3 0 3 3 8 TCGA-DX-A1KY-01A-11R-A24X-07 Nchr19~8941994~LASS4 intergenic "-," "LASS4," chr19~chr19 8941994 8326572 12 -+ 2.094729 10 5 5 10 60 TCGA-DX-A1KY-01A-11R-A24X-07 Nchr19~8941994~LASS4 intergenic "-," "LASS4," chr19~chr19 8941994 8326814 8 -+ 1.732868 7 4 3 7 42 TCGA-DX-A1KY-01A-11R-A24X-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 50 -+ 2.597771 50 27 21 50 420 TCGA-DX-A1KY-01A-11R-A24X-07 Nchr1~162392115~PRRC2C intergenic "-," "PRRC2C," chr1~chr1 162392115 171501482 2 -+ 0.693147 2 0 2 2 6 TCGA-DX-A1KY-01A-11R-A24X-07 Nchr1~162392444~PRRC2C intergenic "-," "PRRC2C," chr1~chr1 162392444 171501482 2 -+ 0.693147 2 2 0 2 2 TCGA-DX-A1KY-01A-11R-A24X-07 Nchr1~173431463~TNFSF4 intergenic "-," "TNFSF4," chr1~chr1 173431463 173176324 3 -- 1.098612 2 2 0 2 12 TCGA-DX-A1KY-01A-11R-A24X-07 Nchr3~194682086~MUC20 intergenic "-," "MUC20," chr3~chr3 194682086 195456519 6 ++ 1.56071 4 1 3 4 42 TCGA-DX-A1KY-01A-11R-A24X-07 Nchr3~37247475~Nchr3~83608697 intergenic "-," "-," chr3~chr3 37247475 83608697 8 ++ 1.667462 5 5 0 5 46 TCGA-DX-A1KY-01A-11R-A24X-07 Nchr3~86691272~Nchr3~87325952 intergenic "-," "-," chr3~chr3 86691272 87325952 2 -- 0.693147 2 1 1 2 2 TCGA-DX-A1KY-01A-11R-A24X-07 Nchr4~158529313~Nchr7~153276373 intergenic "-," "-," chr4~chr7 158529313 153276373 6 -- 1.56071 4 0 4 4 8 TCGA-DX-A1KY-01A-11R-A24X-07 Nchr4~24473998~Nchr4~24259890 intergenic "-," "-," chr4~chr4 24473998 24259890 4 -- 1.039721 1 0 1 1 2 TCGA-DX-A1KY-01A-11R-A24X-07 Nchr6~8438264~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8438264 8784424 3 ++ 1.098612 3 3 0 3 18 TCGA-DX-A1KY-01A-11R-A24X-07 Nchr7~157483244~FREM3 intergenic "-," "FREM3," chr7~chr4 157483244 144507146 30 -- 2.748145 9 9 0 9 8 TCGA-DX-A1KY-01A-11R-A24X-07 NchrX~124318557~ODZ1 intergenic "-," "ODZ1," chrX~chrX 124318557 124097666 5 -- 1.05492 3 3 0 3 10 TCGA-DX-A1KY-01A-11R-A24X-07 NchrX~22418914~GLT25D2 intergenic "-," "GLT25D2," chrX~chr1 22418914 183944348 8 +- 1.732868 8 4 4 8 12 TCGA-DX-A1KY-01A-11R-A24X-07 NchrX~28084180~NchrX~35075673 intergenic "-," "-," chrX~chrX 28084180 35075673 10 ++ 1.557113 6 2 4 6 14 TCGA-DX-A1KY-01A-11R-A24X-07 NchrX~35075750~SYAP1 intergenic "-," "SYAP1," chrX~chrX 35075750 16773068 22 ++ 2.476354 15 15 0 15 32 TCGA-DX-A1KY-01A-11R-A24X-07 NchrX~36982319~NchrX~36698022 intergenic "-," "-," chrX~chrX 36982319 36698022 2 -- 0.693147 2 1 1 2 14 TCGA-DX-A1KY-01A-11R-A24X-07 OPA1~AC069513.3 fusion "OPA1," "AC069513.3," chr3~chr3 193385069 195435005 19 ++ 2.37862 12 5 7 12 54 TCGA-DX-A1KY-01A-11R-A24X-07 PBX1~KIAA1045 fusion "PBX1," "KIAA1045," chr1~chr9 164532548 34971292 2 ++ 0.693147 2 1 1 2 18 TCGA-DX-A1KY-01A-11R-A24X-07 PDK3~EIF2S3 fusion "PDK3," "EIF2S3," chrX~chrX 24483678 24073732 4 ++ 1.039721 3 1 2 3 4 TCGA-DX-A1KY-01A-11R-A24X-07 PEX3~RP1-230L10.1 fusion "PEX3," "RP1-230L10.1," chr6~chr6 143800335 164130392 11 ++ 1.767761 11 5 6 11 62 TCGA-DX-A1KY-01A-11R-A24X-07 PLCL2~Nchr12~73290319 intergenic "PLCL2," "-," chr3~chr12 17056403 73290319 5 +- 1.332179 5 3 2 5 48 TCGA-DX-A1KY-01A-11R-A24X-07 PLCL2~Nchr12~73324572 intergenic "PLCL2," "-," chr3~chr12 17056403 73324572 20 +- 2.458204 19 10 9 19 84 TCGA-DX-A1KY-01A-11R-A24X-07 PLCL2~Nchr12~73345803 intergenic "PLCL2," "-," chr3~chr12 17056403 73345803 3 +- 1.098612 3 2 1 3 14 TCGA-DX-A1KY-01A-11R-A24X-07 PLCL2~Nchr12~80419377 intergenic "PLCL2," "-," chr3~chr12 17056403 80419377 3 ++ 1.386294 4 2 1 4 72 TCGA-DX-A1KY-01A-11R-A24X-07 PLCL2~Nchr12~80422665 intergenic "PLCL2," "-," chr3~chr12 17056403 80422665 38 ++ 2.757204 38 27 11 38 116 TCGA-DX-A1KY-01A-11R-A24X-07 PPP4R2~FBXW7 fusion "PPP4R2," "FBXW7," chr3~chr4 73047309 153333681 12 +- 1.791759 12 5 7 12 86 TCGA-DX-A1KY-01A-11R-A24X-07 PRDX6~FAM78B fusion "PRDX6," "FAM78B," chr1~chr1 173446631 166040000 12 +- 2.022809 12 8 4 12 46 TCGA-DX-A1KY-01A-11R-A24X-07 PTPRG~Nchr3~27065361 intergenic "PTPRG," "-," chr3~chr3 61989171 27065361 3 +- 1.098612 3 0 3 3 8 TCGA-DX-A1KY-01A-11R-A24X-07 PTPRS~ERLEC1 fusion "PTPRS," "ERLEC1," chr19~chr2 5340675 54028850 3 -+ 1.098612 3 0 3 3 10 TCGA-DX-A1KY-01A-11R-A24X-07 PVRL1~Nchr11~119722826 intergenic "PVRL1," "-," chr11~chr11 119599185 119722826 3 -- 1.098612 3 0 3 3 14 TCGA-DX-A1KY-01A-11R-A24X-07 RAB5A~PLCL2 fusion "RAB5A," "PLCL2," chr3~chr3 19992553 17051166 57 ++ 3.009414 55 27 25 55 228 TCGA-DX-A1KY-01A-11R-A24X-07 RABGAP1L~Nchr1~182739197 intergenic "RABGAP1L," "-," chr1~chr1 174363283 182739197 3 ++ 1.098612 3 3 0 3 110 TCGA-DX-A1KY-01A-11R-A24X-07 RABGAP1L~Nchr1~182740676 intergenic "RABGAP1L," "-," chr1~chr1 174363283 182740676 20 ++ 2.345737 18 9 9 18 140 TCGA-DX-A1KY-01A-11R-A24X-07 RAF1~AC099754.1 fusion "RAF1," "AC099754.1," chr3~chr3 12705312 26660997 11 -- 2.145842 6 5 1 6 64 TCGA-DX-A1KY-01A-11R-A24X-07 RAF1~AC099754.1 fusion "RAF1," "AC099754.1," chr3~chr3 12705312 26661339 29 -- 2.544928 28 17 11 28 118 TCGA-DX-A1KY-01A-11R-A24X-07 RAF1~AC099754.1 fusion "RAF1," "AC099754.1," chr3~chr3 12705312 26662463 3 -- 1.098612 3 2 1 3 70 TCGA-DX-A1KY-01A-11R-A24X-07 RAF1~Nchr3~26548497 intergenic "RAF1," "-," chr3~chr3 12705312 26548497 18 -- 2.293119 17 6 11 17 132 TCGA-DX-A1KY-01A-11R-A24X-07 RARB~PRDM8 fusion "RARB," "PRDM8," chr3~chr4 25216066 81112626 2 ++ 0.693147 2 2 0 2 10 TCGA-DX-A1KY-01A-11R-A24X-07 RBBP7~TTC24 fusion "RBBP7," "TTC24," chrX~chr1 16888161 156551153 3 -+ 0.636514 3 1 2 3 10 TCGA-DX-A1KY-01A-11R-A24X-07 RBBP7~TTC24 fusion "RBBP7," "TTC24," chrX~chr1 16888161 156552023 22 -+ 2.689178 21 15 6 21 44 TCGA-DX-A1KY-01A-11R-A24X-07 RGL1~NchrX~23216434 intergenic "RGL1," "-," chr1~chrX 183835207 23216434 5 ++ 1.05492 5 2 3 5 8 TCGA-DX-A1KY-01A-11R-A24X-07 RP11-123O10.4~GRIP1 fusion "RP11-123O10.4," "GRIP1," chr12~chr12 67462830 66990707 5 -- 1.609438 3 0 3 3 10 TCGA-DX-A1KY-01A-11R-A24X-07 RP11-268G12.1~NchrX~35077371 intergenic "RP11-268G12.1," "-," chrX~chrX 27247452 35077371 18 +- 2.351257 14 10 4 14 54 TCGA-DX-A1KY-01A-11R-A24X-07 RP11-268G12.1~SYAP1 fusion "RP11-268G12.1," "SYAP1," chrX~chrX 27241029 16773068 3 -+ 1.098612 2 2 0 2 12 TCGA-DX-A1KY-01A-11R-A24X-07 RP11-466L17.1~RP11-90C4.1 fusion "RP11-466L17.1," "RP11-90C4.1," chr1~chr1 56080675 56297937 2 ++ 0.693147 2 2 0 2 12 TCGA-DX-A1KY-01A-11R-A24X-07 RP11-543A18.1~Nchr4~166692218 intergenic "RP11-543A18.1," "-," chr3~chr4 65164406 166692218 4 -+ 0.562335 3 0 3 3 10 TCGA-DX-A1KY-01A-11R-A24X-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 2 ++ 0.693147 2 2 0 2 6 TCGA-DX-A1KY-01A-11R-A24X-07 RSPO1~IGF2 fusion "RSPO1," "IGF2,IGF2," chr1~chr11 38077349 2151401 4 -- 1.039721 2 0 2 2 6 TCGA-DX-A1KY-01A-11R-A24X-07 SEPT2~AC009502.3 fusion "SEPT2," "AC009502.3," chr2~chr2 242274627 220602176 4 ++ 1.039721 3 1 2 3 14 TCGA-DX-A1KY-01A-11R-A24X-07 SEPT2~AC009502.4 fusion "SEPT2," "AC009502.4," chr2~chr2 242275513 220572752 93 ++ 2.952139 91 48 41 91 346 TCGA-DX-A1KY-01A-11R-A24X-07 SERPINE2~Nchr2~237862626 intergenic "SERPINE2," "-," chr2~chr2 224856520 237862626 42 -- 2.602422 43 26 14 43 134 TCGA-DX-A1KY-01A-11R-A24X-07 SERPINE2~Nchr2~237868483 intergenic "SERPINE2," "-," chr2~chr2 224856520 237868483 2 -- 1.098612 3 1 1 3 110 TCGA-DX-A1KY-01A-11R-A24X-07 SLC7A2~Nchr8~23838138 intergenic "SLC7A2," "-," chr8~chr8 17359811 23838138 12 +- 1.748155 12 1 11 12 18 TCGA-DX-A1KY-01A-11R-A24X-07 SLC7A2~Nchr8~23873216 intergenic "SLC7A2," "-," chr8~chr8 17359811 23873216 2 +- 0.693147 2 1 1 2 10 TCGA-DX-A1KY-01A-11R-A24X-07 SMARCA2~Nchr17~6991249 intergenic "SMARCA2," "-," chr9~chr17 2060986 6991249 39 ++ 2.711216 38 15 23 38 158 TCGA-DX-A1KY-01A-11R-A24X-07 SMARCA4~CARM1 fusion "SMARCA4," "CARM1," chr19~chr19 11071850 11015627 2 ++ 0.693147 1 1 0 1 8 TCGA-DX-A1KY-01A-11R-A24X-07 SP3~CYBRD1 fusion "SP3," "CYBRD1," chr2~chr2 174828489 172409856 57 -+ 3.016154 55 55 0 55 14 TCGA-DX-A1KY-01A-11R-A24X-07 SP3~Nchr2~172447152 intergenic "SP3," "-," chr2~chr2 174828489 172447152 6 -+ 1.56071 6 6 0 6 2 TCGA-DX-A1KY-01A-11R-A24X-07 STAC~Nchr3~32141590 intergenic "STAC," "-," chr3~chr3 36485132 32141590 2 ++ 0.693147 1 1 0 1 18 TCGA-DX-A1KY-01A-11R-A24X-07 TBC1D15~SLC6A6 fusion "TBC1D15," "SLC6A6," chr12~chr3 72265948 14485132 2 ++ 0.693147 2 1 1 2 22 TCGA-DX-A1KY-01A-11R-A24X-07 TMEM150C~TYW1 fusion "TMEM150C," "TYW1," chr4~chr7 83483059 66548417 4 -+ 1.386294 4 0 4 4 18 TCGA-DX-A1KY-01A-11R-A24X-07 TTBK2~Nchr15~50123114 intergenic "TTBK2," "-," chr15~chr15 43211957 50123114 3 -+ 0.636514 3 1 2 3 6 TCGA-DX-A1KY-01A-11R-A24X-07 WDFY1~PARD3B fusion "WDFY1," "PARD3B," chr2~chr2 224809865 206364620 21 -+ 2.51641 11 5 6 11 52 TCGA-DX-A1KY-01A-11R-A24X-07 WNT5B~CD163 fusion "WNT5B," "CD163," chr12~chr12 1755463 7623993 7 +- 1.747868 7 4 3 7 8 TCGA-DX-A1KY-01A-11R-A24X-07 ZDBF2~PSMD1 fusion "ZDBF2," "PSMD1," chr2~chr2 207146633 232003450 50 ++ 2.543126 49 19 30 49 188 TCGA-DX-A1KY-01A-11R-A24X-07 ZDBF2~PSMD1 fusion "ZDBF2," "PSMD1," chr2~chr2 207146633 232010954 7 ++ 1.277034 6 1 5 6 84 TCGA-DX-A1KY-01A-11R-A24X-07 ZFX~NchrX~28083459 intergenic "ZFX," "-," chrX~chrX 24170947 28083459 3 ++ 1.098612 2 1 1 2 4 TCGA-DX-A1L0-01A-11R-A24X-07 ANKH~DNAH5 fusion "ANKH," "DNAH5," chr5~chr5 14871461 13736041 14 -- 1.833786 14 14 0 14 14 TCGA-DX-A1L0-01A-11R-A24X-07 ANKH~DNAH5 fusion "ANKH," "DNAH5," chr5~chr5 14871461 13737604 11 -- 1.499031 11 11 0 11 20 TCGA-DX-A1L0-01A-11R-A24X-07 ATP5J~AP000235.2 fusion "ATP5J," "AP000235.2," chr21~chr21 27101942 26427747 8 -+ 1.320888 8 4 4 8 28 TCGA-DX-A1L0-01A-11R-A24X-07 ATP9B~ATRX fusion "ATP9B," "ATRX," chr18~chrX 76856649 76909690 9 +- 1.581094 6 1 5 6 44 TCGA-DX-A1L0-01A-11R-A24X-07 ATP9B~LUC7L fusion "ATP9B," "LUC7L," chr18~chr16 76953263 258187 10 +- 2.025326 10 7 3 10 68 TCGA-DX-A1L0-01A-11R-A24X-07 ATRX~Nchr6~5918845 intergenic "ATRX," "-," chrX~chr6 76944311 5918845 7 -+ 1.004242 7 4 3 7 36 TCGA-DX-A1L0-01A-11R-A24X-07 ATRX~Nchr6~5995906 intergenic "ATRX," "-," chrX~chr6 76944311 5995906 7 -+ 0.9557 7 6 1 7 8 TCGA-DX-A1L0-01A-11R-A24X-07 AVIL~GRIP1 fusion "AVIL," "GRIP1," chr12~chr12 58205966 67087291 12 -- 1.86368 7 7 0 7 16 TCGA-DX-A1L0-01A-11R-A24X-07 C1orf21~INTS7 fusion "C1orf21," "INTS7," chr1~chr1 184567595 212126043 27 +- 2.467535 17 7 10 17 46 TCGA-DX-A1L0-01A-11R-A24X-07 CCDC9~Nchr9~5310975 intergenic "CCDC9," "-," chr19~chr9 47774906 5310975 3 ++ 1.098612 3 1 2 3 20 TCGA-DX-A1L0-01A-11R-A24X-07 CNOT2~Nchr12~59797091 intergenic "CNOT2,CNOT2,CNOT2," "-," chr12~chr12 70637260 59797091 103 +- 2.554421 89 88 1 89 2 TCGA-DX-A1L0-01A-11R-A24X-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48270358 94049718 2 -+ 0.693147 2 2 0 2 10 TCGA-DX-A1L0-01A-11R-A24X-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268836 189862999 3 -+ 0.636514 3 2 1 3 2 TCGA-DX-A1L0-01A-11R-A24X-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94053755 48266371 17 +- 0.80827 12 0 12 12 14 TCGA-DX-A1L0-01A-11R-A24X-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94052430 48266636 3 +- 1.098612 2 1 1 2 18 TCGA-DX-A1L0-01A-11R-A24X-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94049756 189868460 4 ++ 0.562335 2 0 2 2 8 TCGA-DX-A1L0-01A-11R-A24X-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189863444 48268285 5 +- 0.500402 2 0 2 2 4 TCGA-DX-A1L0-01A-11R-A24X-07 CPM~MON2 fusion "CPM," "MON2," chr12~chr12 69326458 62926218 21 -+ 2.014067 20 9 11 20 94 TCGA-DX-A1L0-01A-11R-A24X-07 CPSF6~CHMP1A fusion "CPSF6," "CHMP1A," chr12~chr16 69656342 89713739 4 +- 0.562335 4 1 3 4 8 TCGA-DX-A1L0-01A-11R-A24X-07 DDR2~Nchr1~163127653 intergenic "DDR2," "-," chr1~chr1 162731244 163127653 2 ++ 0.693147 2 1 1 2 16 TCGA-DX-A1L0-01A-11R-A24X-07 DIAPH2~RAB3IP fusion "DIAPH2," "RAB3IP," chrX~chr12 95940189 70149164 18 ++ 2.245172 15 10 5 15 28 TCGA-DX-A1L0-01A-11R-A24X-07 DNAH5~Nchr5~53794632 intergenic "DNAH5," "-," chr5~chr5 13830706 53794632 4 -- 0.562335 4 1 3 4 46 TCGA-DX-A1L0-01A-11R-A24X-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 5 +- 1.332179 5 5 0 5 32 TCGA-DX-A1L0-01A-11R-A24X-07 EML1~BASP1 fusion "EML1," "BASP1," chr14~chr5 100317372 17275317 2 ++ 0.693147 2 0 2 2 32 TCGA-DX-A1L0-01A-11R-A24X-07 EVL~Nchr14~99112564 intergenic "EVL," "-," chr14~chr14 100563995 99112564 56 +- 2.580325 52 28 24 52 274 TCGA-DX-A1L0-01A-11R-A24X-07 EVL~Nchr14~99634701 intergenic "EVL," "-," chr14~chr14 100563995 99634701 11 +- 1.366711 10 1 9 10 18 TCGA-DX-A1L0-01A-11R-A24X-07 GTF2A1~Nchr9~22384068 intergenic "GTF2A1," "-," chr14~chr9 81651875 22384068 5 -+ 1.332179 5 1 4 5 10 TCGA-DX-A1L0-01A-11R-A24X-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 146 -- 2.44766 146 146 0 146 52 TCGA-DX-A1L0-01A-11R-A24X-07 HMBOX1~BNIP3L fusion "HMBOX1," "PNMA2,BNIP3L," chr8~chr8 28876430 26362823 70 ++ 3.08477 68 31 37 68 276 TCGA-DX-A1L0-01A-11R-A24X-07 HMBOX1~Nchr8~26356191 intergenic "HMBOX1," "-," chr8~chr8 28876430 26356191 5 ++ 1.332179 5 3 2 5 44 TCGA-DX-A1L0-01A-11R-A24X-07 HMGA2~ARFGAP2 fusion "HMGA2," "ARFGAP2," chr12~chr11 66219161 47193884 12 +- 2.210254 12 7 5 12 46 TCGA-DX-A1L0-01A-11R-A24X-07 HMGA2~Nchr12~61138066 intergenic "HMGA2," "-," chr12~chr12 66221867 61138066 49 ++ 2.749056 49 29 19 49 180 TCGA-DX-A1L0-01A-11R-A24X-07 HMGA2~Nchr12~61161484 intergenic "HMGA2," "-," chr12~chr12 66221867 61161484 3 ++ 0.636514 3 2 1 3 4 TCGA-DX-A1L0-01A-11R-A24X-07 KCNMB4~Nchr6~140465107 intergenic "KCNMB4," "-," chr12~chr6 70760850 140465107 5 +- 1.05492 5 0 5 5 14 TCGA-DX-A1L0-01A-11R-A24X-07 KIAA1614~F11R fusion "KIAA1614," "F11R," chr1~chr1 180897709 160970138 15 +- 2.061113 15 8 7 15 44 TCGA-DX-A1L0-01A-11R-A24X-07 LGR5~TSPAN8 fusion "LGR5," "TSPAN8," chr12~chr12 71834072 71676599 32 +- 2.024807 19 10 9 19 54 TCGA-DX-A1L0-01A-11R-A24X-07 MARS~MSRB3 fusion "MARS," "MSRB3," chr12~chr12 57898082 65881784 11 ++ 1.366711 11 3 8 11 78 TCGA-DX-A1L0-01A-11R-A24X-07 MARS~Nchr12~58375398 intergenic "MARS," "-," chr12~chr12 57898082 58375398 12 ++ 2.022809 12 10 2 12 36 TCGA-DX-A1L0-01A-11R-A24X-07 MARS~Nchr12~66144965 intergenic "MARS," "-," chr12~chr12 57898082 66144965 8 +- 1.559581 8 2 6 8 16 TCGA-DX-A1L0-01A-11R-A24X-07 MON2~Nchr12~61243702 intergenic "MON2," "-," chr12~chr12 62979281 61243702 64 ++ 2.939719 57 42 15 57 208 TCGA-DX-A1L0-01A-11R-A24X-07 MON2~Nchr12~61243702 intergenic "MON2," "-," chr12~chr12 62979262 61243702 2 ++ 0.693147 2 0 2 2 174 TCGA-DX-A1L0-01A-11R-A24X-07 MON2~Nchr12~61388417 intergenic "MON2," "-," chr12~chr12 62949972 61388417 2 ++ 0.693147 2 2 0 2 18 TCGA-DX-A1L0-01A-11R-A24X-07 MON2~Nchr12~61488650 intergenic "MON2," "-," chr12~chr12 62949972 61488650 3 ++ 0.636514 3 3 0 3 10 TCGA-DX-A1L0-01A-11R-A24X-07 MON2~Nchr12~61816793 intergenic "MON2," "-," chr12~chr12 62902260 61816793 4 ++ 1.386294 2 0 2 2 12 TCGA-DX-A1L0-01A-11R-A24X-07 MON2~Nchr12~72194750 intergenic "MON2," "-," chr12~chr12 62960230 72194750 3 ++ 0.636514 3 2 1 3 456 TCGA-DX-A1L0-01A-11R-A24X-07 MON2~Nchr12~72194772 intergenic "MON2," "-," chr12~chr12 62960230 72194772 2 ++ 0.693147 2 0 2 2 456 TCGA-DX-A1L0-01A-11R-A24X-07 MON2~Nchr12~72194776 intergenic "MON2," "-," chr12~chr12 62960230 72194776 208 ++ 2.976081 174 63 102 174 466 TCGA-DX-A1L0-01A-11R-A24X-07 MON2~TBC1D15 fusion "MON2," "TBC1D15," chr12~chr12 62960230 72265850 17 ++ 2.119281 15 8 7 15 78 TCGA-DX-A1L0-01A-11R-A24X-07 MOXD1~Nchr10~61241209 intergenic "MOXD1," "-," chr6~chr10 132636774 61241209 6 -- 1.011404 6 5 1 6 26 TCGA-DX-A1L0-01A-11R-A24X-07 MVK~Nchr12~54175472 intergenic "MVK," "-," chr12~chr12 110029162 54175472 11 +- 1.46814 10 6 4 10 20 TCGA-DX-A1L0-01A-11R-A24X-07 NFIC~IL4I1 fusion "NFIC," "IL4I1," chr19~chr19 3382241 50394364 14 +- 1.673118 13 4 9 13 38 TCGA-DX-A1L0-01A-11R-A24X-07 NHSL1~C16orf5 fusion "NHSL1," "C16orf5," chr6~chr16 138866760 4564665 135 -- 2.937587 131 112 19 131 440 TCGA-DX-A1L0-01A-11R-A24X-07 NHSL1~RP11-272B17.2 fusion "NHSL1," "RP11-272B17.2," chr6~chr12 138794443 59917933 23 -- 2.364678 33 12 8 33 136 TCGA-DX-A1L0-01A-11R-A24X-07 NIPBL~Nchr14~100206797 intergenic "NIPBL," "-," chr5~chr14 36877280 100206797 3 +- 0.636514 3 0 3 3 2 TCGA-DX-A1L0-01A-11R-A24X-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 41 -+ 2.027554 23 0 22 23 26 TCGA-DX-A1L0-01A-11R-A24X-07 Nchr12~29178578~C16orf5 intergenic "-," "C16orf5," chr12~chr16 29178578 4574303 6 -- 1.242453 1 0 1 1 8 TCGA-DX-A1L0-01A-11R-A24X-07 Nchr12~58375543~MSRB3 intergenic "-," "MSRB3," chr12~chr12 58375543 65881784 6 ++ 1.242453 4 2 2 4 12 TCGA-DX-A1L0-01A-11R-A24X-07 Nchr12~59796410~FAM19A2 intergenic "-," "FAM19A2," chr12~chr12 59796410 62449683 9 -+ 1.735126 8 5 3 8 72 TCGA-DX-A1L0-01A-11R-A24X-07 Nchr12~59796410~FAM19A2 intergenic "-," "FAM19A2," chr12~chr12 59796410 62461765 5 -+ 1.609438 5 4 1 5 70 TCGA-DX-A1L0-01A-11R-A24X-07 Nchr12~59796410~FAM19A2 intergenic "-," "FAM19A2," chr12~chr12 59796410 62477131 6 -+ 1.011404 1 0 1 1 8 TCGA-DX-A1L0-01A-11R-A24X-07 Nchr12~61245435~FAM19A2 intergenic "-," "FAM19A2," chr12~chr12 61245435 62461765 5 ++ 0.500402 5 0 5 5 32 TCGA-DX-A1L0-01A-11R-A24X-07 Nchr12~61245435~Nchr12~61542871 intergenic "-," "-," chr12~chr12 61245435 61542871 17 ++ 2.476247 12 10 2 12 100 TCGA-DX-A1L0-01A-11R-A24X-07 Nchr12~61543064~Nchr12~58410870 intergenic "-," "-," chr12~chr12 61543064 58410870 4 +- 0.562335 4 4 0 4 14 TCGA-DX-A1L0-01A-11R-A24X-07 Nchr12~61543064~TBC1D30 intergenic "-," "TBC1D30," chr12~chr12 61543064 65191726 4 +- 1.039721 4 2 2 4 22 TCGA-DX-A1L0-01A-11R-A24X-07 Nchr12~61543064~TBC1D30 intergenic "-," "TBC1D30," chr12~chr12 61543064 65219962 4 +- 1.039721 1 0 1 1 32 TCGA-DX-A1L0-01A-11R-A24X-07 Nchr12~61665712~BEST3 intergenic "-," "BEST3," chr12~chr12 61665712 70070848 13 -- 2.245035 2 1 1 2 26 TCGA-DX-A1L0-01A-11R-A24X-07 Nchr12~66444643~TMEM19 intergenic "-," "TMEM19," chr12~chr12 66444643 72094658 18 +- 1.981208 17 5 12 17 46 TCGA-DX-A1L0-01A-11R-A24X-07 Nchr12~71833099~TSPAN8 intergenic "-," "TSPAN8," chr12~chr12 71833099 71676599 3 +- 0.636514 2 2 0 2 18 TCGA-DX-A1L0-01A-11R-A24X-07 Nchr12~77545894~FRS2 intergenic "-," "FRS2," chr12~chr12 77545894 69955960 8 ++ 1.494175 3 3 0 3 24 TCGA-DX-A1L0-01A-11R-A24X-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 2 ++ 0.693147 2 2 0 2 12 TCGA-DX-A1L0-01A-11R-A24X-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 4 ++ 1.039721 1 0 1 1 6 TCGA-DX-A1L0-01A-11R-A24X-07 Nchr5~44395451~Nchr5~44615143 intergenic "-," "-," chr5~chr5 44395451 44615143 2 ++ 0.693147 2 1 1 2 4 TCGA-DX-A1L0-01A-11R-A24X-07 Nchr6~134089969~Nchr6~133889386 intergenic "-," "-," chr6~chr6 134089969 133889386 34 -- 2.171758 7 6 1 7 16 TCGA-DX-A1L0-01A-11R-A24X-07 POU2F1~Nchr12~69533591 intergenic "POU2F1," "-," chr1~chr12 167190195 69533591 5 ++ 1.332179 5 0 5 5 6 TCGA-DX-A1L0-01A-11R-A24X-07 POU2F1~Nchr12~69559916 intergenic "POU2F1," "-," chr1~chr12 167190195 69559916 11 ++ 1.168518 4 0 4 4 8 TCGA-DX-A1L0-01A-11R-A24X-07 POU2F1~Nchr12~69585235 intergenic "POU2F1," "-," chr1~chr12 167190195 69585235 8 ++ 1.732868 1 0 1 1 6 TCGA-DX-A1L0-01A-11R-A24X-07 RAB21~FRS2 fusion "RAB21," "FRS2," chr12~chr12 72167802 69955960 9 ++ 1.581094 9 3 6 9 54 TCGA-DX-A1L0-01A-11R-A24X-07 RAB21~Nchr12~77545801 intergenic "RAB21," "-," chr12~chr12 72167802 77545801 6 ++ 1.56071 3 2 1 3 2 TCGA-DX-A1L0-01A-11R-A24X-07 REV3L~TRAF3IP2 fusion "REV3L," "TRAF3IP2," chr6~chr6 111793216 111897024 6 -- 1.329661 6 2 4 6 72 TCGA-DX-A1L0-01A-11R-A24X-07 REV3L~TRAF3IP2 fusion "REV3L," "TRAF3IP2," chr6~chr6 111803953 111897024 12 -- 1.979205 11 3 8 11 52 TCGA-DX-A1L0-01A-11R-A24X-07 RFWD2~Nchr1~175614001 intergenic "RFWD2," "-," chr1~chr1 175956079 175614001 6 -- 1.329661 6 2 4 6 34 TCGA-DX-A1L0-01A-11R-A24X-07 RP1-34H18.1~RP11-781A6.1 fusion "RP1-34H18.1," "RP11-781A6.1," chr12~chr12 77966046 78177043 6 ++ 1.011404 6 3 3 6 14 TCGA-DX-A1L0-01A-11R-A24X-07 RP11-123O10.4~RP11-611E13.2 fusion "RP11-123O10.4," "RP11-611E13.2," chr12~chr12 67462830 70298199 10 -- 1.748067 10 4 6 10 38 TCGA-DX-A1L0-01A-11R-A24X-07 RP11-324P9.1~Nchr12~69494876 intergenic "RP11-324P9.1," "-," chr12~chr12 69616391 69494876 24 ++ 2.163765 18 18 0 18 50 TCGA-DX-A1L0-01A-11R-A24X-07 RP11-872D17.8~Nchr8~2761547 intergenic "SLC43A3,RP11-872D17.8," "-," chr11~chr8 57182088 2761547 5 -+ 1.332179 5 2 3 5 20 TCGA-DX-A1L0-01A-11R-A24X-07 RP11-872D17.8~Nchr8~2762224 intergenic "SLC43A3,RP11-872D17.8," "-," chr11~chr8 57182088 2762224 6 -+ 1.011404 6 4 2 6 18 TCGA-DX-A1L0-01A-11R-A24X-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 3 ++ 0.636514 2 2 0 2 12 TCGA-DX-A1L0-01A-11R-A24X-07 RPS12~Nchr6~151547054 intergenic "RPS12," "-," chr6~chr6 133135904 151547054 3 -- 0.636514 3 2 1 3 6 TCGA-DX-A1L0-01A-11R-A24X-07 SLC16A7~NUP107 fusion "SLC16A7," "NUP107," chr12~chr12 59990017 69127232 218 ++ 3.134786 209 55 154 209 654 TCGA-DX-A1L0-01A-11R-A24X-07 SLC16A7~NUP107 fusion "SLC16A7," "NUP107," chr12~chr12 60036407 69127232 7 ++ 1.549826 7 2 5 7 506 TCGA-DX-A1L0-01A-11R-A24X-07 SLC16A7~Nchr12~69494876 intergenic "SLC16A7," "-," chr12~chr12 60169256 69494876 15 ++ 2.176186 15 12 3 15 64 TCGA-DX-A1L0-01A-11R-A24X-07 SLC16A7~RP11-522D2.1 fusion "SLC16A7," "RP11-522D2.1," chr12~chr1 59990017 180531340 4 ++ 1.039721 4 0 4 4 20 TCGA-DX-A1L0-01A-11R-A24X-07 SLC9A8~B4GALT5 fusion "SLC9A8," "B4GALT5," chr20~chr20 48431726 48273239 2 +- 0.693147 2 2 0 2 24 TCGA-DX-A1L0-01A-11R-A24X-07 SLFN5~TBC1D15 fusion "SLFN5," "TBC1D15," chr17~chr12 33570162 72307606 98 ++ 2.759975 92 91 1 92 276 TCGA-DX-A1L0-01A-11R-A24X-07 STX7~Nchr6~137431997 intergenic "STX7," "-," chr6~chr6 132834146 137431997 16 -- 2.067976 13 0 13 13 32 TCGA-DX-A1L0-01A-11R-A24X-07 TBC1D15~SLC16A7 fusion "TBC1D15," "SLC16A7," chr12~chr12 72266783 60165000 25 ++ 2.546117 25 7 18 25 116 TCGA-DX-A1L0-01A-11R-A24X-07 TBC1D15~SLC16A7 fusion "TBC1D15," "SLC16A7," chr12~chr12 72265948 60165000 3 ++ 0.636514 3 3 0 3 80 TCGA-DX-A1L0-01A-11R-A24X-07 TBC1D30~Nchr12~61562155 intergenic "TBC1D30," "-," chr12~chr12 65221676 61562155 8 +- 1.559581 4 4 0 4 20 TCGA-DX-A1L0-01A-11R-A24X-07 TIAM2~RP11-307P5.1 fusion "TIAM2," "RP11-307P5.1," chr6~chr6 155486543 148054865 8 ++ 1.320888 8 1 7 8 14 TCGA-DX-A1L0-01A-11R-A24X-07 TIAM2~RP11-307P5.1 fusion "TIAM2," "RP11-307P5.1," chr6~chr6 155486543 148058453 8 ++ 0.974315 8 4 4 8 6 TCGA-DX-A1L0-01A-11R-A24X-07 TMEM19~Nchr12~66444643 intergenic "TMEM19," "-," chr12~chr12 72094805 66444643 4 +- 1.039721 4 1 3 4 8 TCGA-DX-A1L0-01A-11R-A24X-07 USP15~PRRC2C fusion "USP15," "PRRC2C," chr12~chr1 62654284 171501482 4 ++ 1.039721 4 4 0 4 14 TCGA-DX-A1L0-01A-11R-A24X-07 XPR1~Nchr12~61875397 intergenic "XPR1," "-," chr1~chr12 180756990 61875397 4 +- 1.386294 3 0 3 3 12 TCGA-DX-A1L0-01A-11R-A24X-07 XPR1~TNR fusion "XPR1," "TNR," chr1~chr1 180601406 175497505 9 +- 1.735126 5 0 5 5 16 TCGA-DX-A1L0-01A-11R-A24X-07 ZFC3H1~MON2 fusion "ZFC3H1," "MON2," chr12~chr12 72050665 62972225 72 -+ 2.753899 75 34 38 75 238 TCGA-DX-A1L0-01A-11R-A24X-07 ZFC3H1~MON2 fusion "ZFC3H1," "MON2," chr12~chr12 72050665 62974077 6 -+ 1.011404 6 3 3 6 172 TCGA-DX-A1KZ-01A-11R-A24X-07 AC010226.4~Nchr6~120296347 intergenic "AC010226.4," "-," chr5~chr6 114938853 120296347 4 +- 1.039721 3 0 3 3 14 TCGA-DX-A1KZ-01A-11R-A24X-07 ADCY2~HSDL2 fusion "ADCY2," "HSDL2," chr5~chr9 7773214 115179121 4 ++ 1.386294 4 1 3 4 14 TCGA-DX-A1KZ-01A-11R-A24X-07 ADK~Nchr10~83554361 intergenic "ADK," "-," chr10~chr10 76360251 83554361 9 +- 1.676988 7 1 6 7 24 TCGA-DX-A1KZ-01A-11R-A24X-07 ANKH~RP11-127H5.1 fusion "ANKH," "RP11-127H5.1," chr5~chr8 14871461 105727074 3 -+ 1.098612 2 1 1 2 4 TCGA-DX-A1KZ-01A-11R-A24X-07 ANKH~STEAP3 fusion "ANKH," "AC016736.2,STEAP3," chr5~chr2 14871461 120003065 20 -+ 2.607805 20 10 7 20 60 TCGA-DX-A1KZ-01A-11R-A24X-07 ANKRD33B~Nchr19~378580 intergenic "ANKRD33B," "-," chr5~chr19 10564945 378580 3 +- 0.636514 3 0 3 3 10 TCGA-DX-A1KZ-01A-11R-A24X-07 ATP1B3~Nchr12~58249345 intergenic "ATP1B3," "-," chr3~chr12 141640905 58249345 159 ++ 2.846975 145 105 40 145 250 TCGA-DX-A1KZ-01A-11R-A24X-07 ATP1B3~Nchr12~58260410 intergenic "ATP1B3," "-," chr3~chr12 141640905 58260410 5 ++ 0.950271 3 2 1 3 40 TCGA-DX-A1KZ-01A-11R-A24X-07 ATP1B3~Nchr12~58260410 intergenic "ATP1B3," "-," chr3~chr12 141626116 58260410 2 ++ 0.693147 2 2 0 2 4 TCGA-DX-A1KZ-01A-11R-A24X-07 ATP1B3~Nchr12~58260566 intergenic "ATP1B3," "-," chr3~chr12 141640905 58260566 29 ++ 2.430791 28 11 16 28 456 TCGA-DX-A1KZ-01A-11R-A24X-07 ATP1B3~Nchr12~58284096 intergenic "ATP1B3," "-," chr3~chr12 141640905 58284096 557 ++ 3.053318 539 299 239 539 1424 TCGA-DX-A1KZ-01A-11R-A24X-07 ATP1B3~Nchr12~58284096 intergenic "ATP1B3," "-," chr3~chr12 141626116 58284096 18 ++ 2.322188 17 5 12 17 114 TCGA-DX-A1KZ-01A-11R-A24X-07 ATP1B3~Nchr12~58284096 intergenic "ATP1B3," "-," chr3~chr12 141632678 58284096 10 ++ 1.504788 8 5 3 8 540 TCGA-DX-A1KZ-01A-11R-A24X-07 ATP1B3~Nchr12~58284096 intergenic "ATP1B3," "-," chr3~chr12 141634862 58284096 51 ++ 2.834627 45 25 20 45 678 TCGA-DX-A1KZ-01A-11R-A24X-07 ATP1B3~Nchr12~58289435 intergenic "ATP1B3," "-," chr3~chr12 141640905 58289435 17 ++ 2.014123 17 8 8 17 28 TCGA-DX-A1KZ-01A-11R-A24X-07 B4GALNT1~Nchr12~71506333 intergenic "B4GALNT1," "-," chr12~chr12 58025698 71506333 8 -+ 1.494175 8 6 2 8 100 TCGA-DX-A1KZ-01A-11R-A24X-07 BBS9~Nchr7~33900207 intergenic "BBS9," "-," chr7~chr7 33573788 33900207 7 ++ 1.277034 6 5 1 6 34 TCGA-DX-A1KZ-01A-11R-A24X-07 C10orf18~OAZ1 fusion "C10orf18," "OAZ1," chr10~chr19 5727138 2271781 2 ++ 0.693147 2 1 1 2 8 TCGA-DX-A1KZ-01A-11R-A24X-07 C12orf11~Nchr12~73824209 intergenic "C12orf11," "-," chr12~chr12 27070285 73824209 5 -+ 1.609438 4 1 3 4 20 TCGA-DX-A1KZ-01A-11R-A24X-07 C19orf29~Nchr12~33437903 intergenic "C19orf29," "-," chr19~chr12 3623686 33437903 5 -+ 0.673012 5 2 3 5 6 TCGA-DX-A1KZ-01A-11R-A24X-07 CCT5~SVEP1 fusion "CCT5," "SVEP1," chr5~chr9 10258647 113198784 3 +- 1.098612 2 2 0 2 14 TCGA-DX-A1KZ-01A-11R-A24X-07 CDH4~Nchr12~7864008 intergenic "CDH4," "-," chr20~chr12 60448956 7864008 3 ++ 1.098612 2 2 0 2 10 TCGA-DX-A1KZ-01A-11R-A24X-07 CELF2~GABRR1 fusion "CELF2," "GABRR1," chr10~chr6 11060126 89895169 3 +- 0.636514 3 0 3 3 4 TCGA-DX-A1KZ-01A-11R-A24X-07 CELF2~GABRR1 fusion "CELF2," "GABRR1," chr10~chr6 11060126 89910984 4 +- 0.562335 4 0 4 4 10 TCGA-DX-A1KZ-01A-11R-A24X-07 COL14A1~MRPL13 fusion "COL14A1," "MRPL13," chr8~chr8 121357802 121408364 3 +- 0.636514 3 1 2 3 6 TCGA-DX-A1KZ-01A-11R-A24X-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265237 189858764 5 -+ 1.609438 1 1 0 1 2 TCGA-DX-A1KZ-01A-11R-A24X-07 CPSF6~RP11-532N4.2 fusion "CPSF6," "RP11-532N4.2," chr12~chr6 69633486 123789961 9 ++ 0.964963 9 0 9 9 12 TCGA-DX-A1KZ-01A-11R-A24X-07 CTD-2021H9.2~Nchr12~75243337 intergenic "CTD-2021H9.2," "-," chr12~chr12 71440458 75243337 12 -+ 1.445186 11 3 8 11 32 TCGA-DX-A1KZ-01A-11R-A24X-07 CTD-2021H9.2~Nchr12~75255326 intergenic "CTD-2021H9.2," "-," chr12~chr12 71440458 75255326 13 -+ 2.204785 9 0 9 9 32 TCGA-DX-A1KZ-01A-11R-A24X-07 CTD-2021H9.3~PTPRR fusion "CTD-2021H9.3," "PTPRR," chr12~chr12 71509630 71158558 10 -- 1.220607 10 4 6 10 6 TCGA-DX-A1KZ-01A-11R-A24X-07 CTDSP2~LGR5 fusion "CTDSP2," "LGR5," chr12~chr12 58217687 71946853 73 -+ 2.835736 70 30 40 70 312 TCGA-DX-A1KZ-01A-11R-A24X-07 CTDSP2~LGR5 fusion "CTDSP2," "LGR5," chr12~chr12 58217661 71946853 16 -+ 1.927392 16 2 14 16 304 TCGA-DX-A1KZ-01A-11R-A24X-07 CTDSP2~LGR5 fusion "CTDSP2," "LGR5," chr12~chr12 58217687 71950399 8 -+ 1.559581 8 5 3 8 6 TCGA-DX-A1KZ-01A-11R-A24X-07 DAB2~OTOGL fusion "DAB2," "OTOGL," chr5~chr12 39375434 80772549 4 -+ 1.386294 3 2 1 3 62 TCGA-DX-A1KZ-01A-11R-A24X-07 DBC1~Nchr5~2103324 intergenic "DBC1," "-," chr9~chr5 122075416 2103324 2 -- 0.693147 1 1 0 1 4 TCGA-DX-A1KZ-01A-11R-A24X-07 DCAF13~Nchr5~2270975 intergenic "DCAF13,DCAF13," "-," chr8~chr5 104427744 2270975 2 +- 0.693147 2 1 1 2 34 TCGA-DX-A1KZ-01A-11R-A24X-07 DCTN2~Nchr5~116194797 intergenic "DCTN2," "-," chr12~chr5 57939811 116194797 10 -- 1.557113 9 7 2 9 10 TCGA-DX-A1KZ-01A-11R-A24X-07 DGKA~Nchr12~3178913 intergenic "DGKA," "-," chr12~chr12 56325907 3178913 6 ++ 1.329661 6 6 0 6 2 TCGA-DX-A1KZ-01A-11R-A24X-07 DMXL1~NANS fusion "DMXL1," "NANS," chr5~chr9 118407351 100843098 7 ++ 1.153742 7 0 7 7 44 TCGA-DX-A1KZ-01A-11R-A24X-07 DMXL1~Nchr12~18378593 intergenic "DMXL1," "-," chr5~chr12 118407351 18378593 5 ++ 1.05492 5 5 0 5 22 TCGA-DX-A1KZ-01A-11R-A24X-07 DMXL1~Nchr12~75209094 intergenic "DMXL1," "-," chr5~chr12 118407351 75209094 28 ++ 2.266298 30 10 18 30 132 TCGA-DX-A1KZ-01A-11R-A24X-07 DMXL1~Nchr12~75209094 intergenic "DMXL1," "-," chr5~chr12 118417392 75209094 17 ++ 2.088502 12 3 9 12 212 TCGA-DX-A1KZ-01A-11R-A24X-07 DSE~PLEKHG1 fusion "DSE," "PLEKHG1," chr6~chr6 116720825 151130241 38 ++ 2.828345 38 11 27 38 140 TCGA-DX-A1KZ-01A-11R-A24X-07 DSE~PLEKHG1 fusion "DSE," "PLEKHG1," chr6~chr6 116720829 151130241 15 ++ 2.430791 14 7 7 14 146 TCGA-DX-A1KZ-01A-11R-A24X-07 EBF3~Nchr8~129800886 intergenic "EBF3," "-," chr10~chr8 131755522 129800886 31 -+ 2.516807 29 18 11 29 162 TCGA-DX-A1KZ-01A-11R-A24X-07 EBF3~Nchr8~144063918 intergenic "EBF3," "-," chr10~chr8 131755522 144063918 21 -- 2.017364 21 19 2 21 62 TCGA-DX-A1KZ-01A-11R-A24X-07 ELF4~NchrX~82594849 intergenic "ELF4," "-," chrX~chrX 129244300 82594849 2 -- 0.693147 2 1 1 2 16 TCGA-DX-A1KZ-01A-11R-A24X-07 EPB41L5~FZR1 fusion "EPB41L5," "FZR1," chr2~chr19 120799686 3522954 7 ++ 1.277034 7 5 2 7 16 TCGA-DX-A1KZ-01A-11R-A24X-07 EYA4~Nchr6~140972698 intergenic "EYA4," "-," chr6~chr6 133595951 140972698 4 +- 1.039721 1 1 0 1 6 TCGA-DX-A1KZ-01A-11R-A24X-07 FAM134B~Nchr12~73290319 intergenic "FAM134B," "-," chr5~chr12 16565872 73290319 4 -- 1.039721 3 2 1 3 10 TCGA-DX-A1KZ-01A-11R-A24X-07 FAM91A1~Nchr11~82266773 intergenic "FAM91A1," "-," chr8~chr11 124822591 82266773 24 ++ 2.416616 22 13 9 22 46 TCGA-DX-A1KZ-01A-11R-A24X-07 FBXL7~MRPL51 fusion "FBXL7," "MRPL51," chr5~chr12 15500822 6601633 5 +- 1.332179 5 1 4 5 60 TCGA-DX-A1KZ-01A-11R-A24X-07 FBXL7~MRPL51 fusion "FBXL7," "MRPL51," chr5~chr12 15500822 6602138 55 +- 2.824266 54 40 14 54 158 TCGA-DX-A1KZ-01A-11R-A24X-07 FGFR1OP2~C12orf11 fusion "FGFR1OP2," "C12orf11," chr12~chr12 27091643 27081838 10 +- 1.609438 10 7 3 10 72 TCGA-DX-A1KZ-01A-11R-A24X-07 FHL1~TM7SF4 fusion "FHL1," "TM7SF4," chrX~chr8 135252139 105352034 8 ++ 1.732868 4 4 0 4 28 TCGA-DX-A1KZ-01A-11R-A24X-07 FHL1~TSPAN31 fusion "FHL1," "TSPAN31," chrX~chr12 135252139 58139528 2 ++ 0.693147 2 2 0 2 18 TCGA-DX-A1KZ-01A-11R-A24X-07 FHL1~TSPAN31 fusion "FHL1," "TSPAN31," chrX~chr12 135252139 58140372 19 ++ 1.986267 19 18 1 19 32 TCGA-DX-A1KZ-01A-11R-A24X-07 FKBP4~GAPDH fusion "FKBP4," "GAPDH," chr12~chr12 2907037 6643976 9 ++ 1.581094 9 4 5 9 38 TCGA-DX-A1KZ-01A-11R-A24X-07 FOXM1~Nchr5~12014355 intergenic "FOXM1," "-," chr12~chr5 2986086 12014355 4 -- 1.039721 2 0 2 2 8 TCGA-DX-A1KZ-01A-11R-A24X-07 GALNT12~ROR2 fusion "GALNT12," "ROR2," chr9~chr9 101570351 94325611 5 +- 1.332179 5 5 0 5 18 TCGA-DX-A1KZ-01A-11R-A24X-07 GNAQ~Nchr8~86214896 intergenic "GNAQ," "-," chr9~chr8 80537077 86214896 6 -- 1.56071 5 1 4 5 26 TCGA-DX-A1KZ-01A-11R-A24X-07 GRIN2B~MYF5 fusion "GRIN2B," "MYF5," chr12~chr12 14132862 81110819 11 -+ 1.84622 11 5 6 11 36 TCGA-DX-A1KZ-01A-11R-A24X-07 GRIN2B~MYF6 fusion "GRIN2B," "MYF6," chr12~chr12 14132862 81101634 34 -+ 2.827447 34 10 23 34 154 TCGA-DX-A1KZ-01A-11R-A24X-07 GRIN2B~Nchr12~81092768 intergenic "GRIN2B," "-," chr12~chr12 14132862 81092768 8 -+ 1.494175 6 1 5 6 40 TCGA-DX-A1KZ-01A-11R-A24X-07 GRIN2B~Nchr12~81120488 intergenic "GRIN2B," "-," chr12~chr12 14132862 81120488 8 -+ 1.255482 8 4 4 8 2 TCGA-DX-A1KZ-01A-11R-A24X-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 176 -- 2.044612 176 176 0 176 248 TCGA-DX-A1KZ-01A-11R-A24X-07 HSF2~Nchr6~121027536 intergenic "HSF2," "-," chr6~chr6 122720975 121027536 7 ++ 1.549826 5 1 4 5 48 TCGA-DX-A1KZ-01A-11R-A24X-07 HSF2~Nchr6~121027539 intergenic "HSF2," "-," chr6~chr6 122720975 121027539 8 ++ 1.213008 8 3 5 8 46 TCGA-DX-A1KZ-01A-11R-A24X-07 ISCA1~WWP1 fusion "ISCA1," "WWP1," chr9~chr8 88897293 87447681 26 -+ 2.611213 24 9 15 24 52 TCGA-DX-A1KZ-01A-11R-A24X-07 ITPR2~Nchr12~108897720 intergenic "ITPR2," "-," chr12~chr12 26943090 108897720 15 -+ 2.211069 9 0 9 9 6 TCGA-DX-A1KZ-01A-11R-A24X-07 ITPR2~Nchr5~160406782 intergenic "ITPR2," "-," chr12~chr5 26943090 160406782 5 -- 1.332179 1 0 1 1 6 TCGA-DX-A1KZ-01A-11R-A24X-07 ITPR2~NchrX~116163330 intergenic "ITPR2," "-," chr12~chrX 26943090 116163330 12 -+ 1.519383 9 0 8 9 6 TCGA-DX-A1KZ-01A-11R-A24X-07 KATNA1~RALYL fusion "KATNA1," "RALYL," chr6~chr8 149969605 85441534 4 -+ 0.562335 1 1 0 1 8 TCGA-DX-A1KZ-01A-11R-A24X-07 KIAA1467~Nchr12~18081997 intergenic "KIAA1467," "-," chr12~chr12 13229077 18081997 6 ++ 1.329661 6 3 3 6 52 TCGA-DX-A1KZ-01A-11R-A24X-07 LAMP2~LGR5 fusion "LAMP2," "LGR5," chrX~chr12 119602757 71946853 8 -+ 1.494175 7 7 0 7 8 TCGA-DX-A1KZ-01A-11R-A24X-07 LGR5~Nchr10~16316681 intergenic "LGR5," "-," chr12~chr10 71966701 16316681 4 +- 0.693147 2 2 0 2 18 TCGA-DX-A1KZ-01A-11R-A24X-07 LGR5~RP3-399L15.1 fusion "LGR5," "RP3-399L15.1," chr12~chr6 71898465 114809913 32 +- 2.387579 20 0 20 20 10 TCGA-DX-A1KZ-01A-11R-A24X-07 MCM6~Nchr2~124484000 intergenic "MCM6," "-," chr2~chr2 136622583 124484000 2 -+ 0.693147 2 2 0 2 4 TCGA-DX-A1KZ-01A-11R-A24X-07 MCM6~Nchr2~124485099 intergenic "MCM6," "-," chr2~chr2 136622583 124485099 10 -+ 1.19355 10 1 9 10 18 TCGA-DX-A1KZ-01A-11R-A24X-07 MDM2~SPATS2 fusion "MDM2," "SPATS2," chr12~chr12 69233581 49883248 163 ++ 3.256412 160 89 68 160 594 TCGA-DX-A1KZ-01A-11R-A24X-07 MDM2~SPATS2 fusion "MDM2," "SPATS2," chr12~chr12 69229764 49883248 4 ++ 1.039721 4 3 1 4 10 TCGA-DX-A1KZ-01A-11R-A24X-07 MED21~Nchr12~74771412 intergenic "MED21," "-," chr12~chr12 27175554 74771412 9 +- 1.060857 1 0 1 1 6 TCGA-DX-A1KZ-01A-11R-A24X-07 MED21~Nchr12~75158445 intergenic "MED21," "-," chr12~chr12 27175554 75158445 45 +- 2.427673 11 0 11 11 2 TCGA-DX-A1KZ-01A-11R-A24X-07 MED21~PIP5K1C fusion "MED21," "PIP5K1C," chr12~chr19 27175554 3661999 16 +- 1.808046 15 0 15 15 22 TCGA-DX-A1KZ-01A-11R-A24X-07 METTL1~Nchr12~70099784 intergenic "METTL1," "-," chr12~chr12 58163348 70099784 12 -- 1.539654 12 7 5 12 36 TCGA-DX-A1KZ-01A-11R-A24X-07 METTL1~Nchr12~70109367 intergenic "METTL1," "-," chr12~chr12 58163348 70109367 4 -- 1.039721 4 2 2 4 30 TCGA-DX-A1KZ-01A-11R-A24X-07 METTL1~Nchr12~70119169 intergenic "METTL1," "-," chr12~chr12 58163348 70119169 4 -- 0.562335 4 4 0 4 28 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr10~111221764~LGR5 intergenic "-," "LGR5," chr10~chr12 111221764 71965294 11 -+ 1.033562 5 3 2 5 4 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 51 -+ 2.608049 20 0 20 20 38 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr12~10931684~B4GALNT1 intergenic "-," "B4GALNT1,SLC26A10," chr12~chr12 10931684 58017771 84 -+ 2.656199 86 61 23 86 228 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr12~11343026~CTD-2021H9.2 intergenic "-," "CTD-2021H9.2," chr12~chr12 11343026 71463410 16 +- 1.803719 16 6 10 16 22 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr12~11343026~MGAT4C intergenic "-," "MGAT4C," chr12~chr12 11343026 86863245 13 ++ 1.818483 13 7 6 13 42 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr12~113828395~Nchr12~113828610 intergenic "-," "-," chr12~chr12 113828395 113828610 2 -- 0.693147 2 1 1 2 4 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr12~27015627~Nchr12~75255326 intergenic "-," "-," chr12~chr12 27015627 75255326 5 ++ 0.500402 4 4 0 4 12 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr12~27016195~Nchr12~75255326 intergenic "-," "-," chr12~chr12 27016195 75255326 8 ++ 1.494175 8 8 0 8 40 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr12~58248686~Nchr12~58284096 intergenic "-," "-," chr12~chr12 58248686 58284096 12 -+ 1.704551 4 0 4 4 16 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr12~58288134~Nchr12~68277694 intergenic "-," "-," chr12~chr12 58288134 68277694 8 ++ 1.906155 8 3 5 8 28 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr12~69164176~Nchr12~69594594 intergenic "-," "-," chr12~chr12 69164176 69594594 16 -+ 2.393312 16 14 2 16 76 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr12~69517910~Nchr12~14248756 intergenic "-," "-," chr12~chr12 69517910 14248756 16 ++ 1.509273 13 10 3 13 40 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr12~69517910~Nchr12~18827786 intergenic "-," "-," chr12~chr12 69517910 18827786 8 ++ 1.559581 2 0 2 2 6 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr12~69598304~Nchr12~32932789 intergenic "-," "-," chr12~chr12 69598304 32932789 2 +- 0.693147 2 0 2 2 8 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr12~69600554~Nchr12~32932789 intergenic "-," "-," chr12~chr12 69600554 32932789 8 +- 1.732868 8 4 4 8 38 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr12~70551103~Nchr12~27015500 intergenic "-," "-," chr12~chr12 70551103 27015500 14 ++ 1.809514 4 3 1 4 12 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr12~73318675~GUCY2F intergenic "-," "GUCY2F," chr12~chrX 73318675 108616228 2 +- 0.693147 2 0 2 2 2 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr12~73871154~Nchr12~70550646 intergenic "-," "-," chr12~chr12 73871154 70550646 6 ++ 1.56071 6 5 1 6 34 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr12~74678805~Nchr12~69162551 intergenic "-," "-," chr12~chr12 74678805 69162551 52 -- 2.794646 29 10 19 29 96 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr12~74678805~PRMT8 intergenic "-," "PRMT8," chr12~chr12 74678805 3619916 13 -+ 1.844621 13 4 9 13 40 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr12~74678805~TSPAN8 intergenic "-," "TSPAN8," chr12~chr12 74678805 71523194 117 -- 2.902263 111 65 46 111 274 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr12~74733445~Nchr12~18378593 intergenic "-," "-," chr12~chr12 74733445 18378593 3 -+ 1.098612 2 1 1 2 16 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr12~75158334~Nchr12~74771412 intergenic "-," "-," chr12~chr12 75158334 74771412 17 -- 2.200828 10 9 1 10 38 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 41 -+ 2.762797 41 19 22 41 274 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145013721 3 -+ 1.098612 3 3 0 3 18 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr2~122051781~TNKS intergenic "-," "TNKS," chr2~chr8 122051781 9591488 3 +- 1.098612 3 3 0 3 32 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr2~60962196~Nchr12~58249345 intergenic "-," "-," chr2~chr12 60962196 58249345 22 -+ 2.113719 22 0 22 22 208 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr2~60962196~Nchr12~58260566 intergenic "-," "-," chr2~chr12 60962196 58260566 3 -+ 0.636514 3 0 3 3 228 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr2~60962196~Nchr12~58284096 intergenic "-," "-," chr2~chr12 60962196 58284096 108 -+ 2.885869 108 0 108 108 958 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr5~16121052~TAPBPL intergenic "-," "TAPBPL," chr5~chr12 16121052 6562233 9 ++ 1.676988 9 6 3 9 30 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr5~16121052~TAPBPL intergenic "-," "TAPBPL," chr5~chr12 16121052 6562613 10 ++ 1.332179 10 6 4 10 16 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr6~119484897~C12orf76 intergenic "-," "C12orf76," chr6~chr12 119484897 110480264 8 -- 1.320888 5 3 2 5 26 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr6~119484949~C12orf76 intergenic "-," "C12orf76," chr6~chr12 119484949 110480264 4 -- 1.039721 4 4 0 4 12 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr6~140972615~RP11-307P5.1 intergenic "-," "RP11-307P5.1," chr6~chr6 140972615 148054865 10 -+ 1.748067 4 3 1 4 18 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr9~67340724~Nchr9~87135977 intergenic "-," "-," chr9~chr9 67340724 87135977 8 ++ 1.320888 6 1 5 6 42 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr9~87136140~Nchr12~74551664 intergenic "-," "-," chr9~chr12 87136140 74551664 13 +- 1.524707 5 3 2 5 26 TCGA-DX-A1KZ-01A-11R-A24X-07 Nchr9~87153998~Nchr12~74551664 intergenic "-," "-," chr9~chr12 87153998 74551664 9 +- 1.676988 4 0 4 4 26 TCGA-DX-A1KZ-01A-11R-A24X-07 NchrX~115085294~ENOX2 intergenic "-," "ENOX2," chrX~chrX 115085294 129909539 3 -+ 1.098612 2 1 1 2 10 TCGA-DX-A1KZ-01A-11R-A24X-07 NchrX~115085294~ENOX2 intergenic "-," "ENOX2," chrX~chrX 115085294 129937243 3 -+ 0.636514 3 2 1 3 14 TCGA-DX-A1KZ-01A-11R-A24X-07 NchrX~115085294~ENOX2 intergenic "-," "ENOX2," chrX~chrX 115085294 129969824 6 -+ 1.56071 6 2 4 6 10 TCGA-DX-A1KZ-01A-11R-A24X-07 NchrX~82579428~APLN intergenic "-," "APLN," chrX~chrX 82579428 128785500 4 -+ 0.562335 3 1 2 3 32 TCGA-DX-A1KZ-01A-11R-A24X-07 NchrX~82579428~NchrX~128777277 intergenic "-," "-," chrX~chrX 82579428 128777277 16 -+ 2.133382 15 4 11 15 42 TCGA-DX-A1KZ-01A-11R-A24X-07 NchrX~82579481~APLN intergenic "-," "APLN," chrX~chrX 82579481 128785500 6 -+ 0.693147 6 0 6 6 18 TCGA-DX-A1KZ-01A-11R-A24X-07 NchrX~82579481~NchrX~128777277 intergenic "-," "-," chrX~chrX 82579481 128777277 2 -+ 0.693147 2 1 1 2 44 TCGA-DX-A1KZ-01A-11R-A24X-07 PALM2-AKAP2~Nchr12~67537848 intergenic "PALM2-AKAP2,PALM2,PALM2-AKAP2,PALM2," "-," chr9~chr12 112642961 67537848 5 +- 1.332179 3 0 3 3 16 TCGA-DX-A1KZ-01A-11R-A24X-07 PALM2-AKAP2~Nchr12~67568736 intergenic "PALM2-AKAP2,PALM2,PALM2-AKAP2,PALM2," "-," chr9~chr12 112642961 67568736 4 ++ 1.039721 4 3 1 4 4 TCGA-DX-A1KZ-01A-11R-A24X-07 PDE10A~Nchr2~122639426 intergenic "PDE10A," "-," chr6~chr2 165792683 122639426 22 -- 2.563151 22 9 13 22 52 TCGA-DX-A1KZ-01A-11R-A24X-07 PGGT1B~Nchr8~97187141 intergenic "PGGT1B," "-," chr5~chr8 114588834 97187141 5 -- 0.500402 2 2 0 2 18 TCGA-DX-A1KZ-01A-11R-A24X-07 PGGT1B~Nchr8~97187141 intergenic "PGGT1B," "-," chr5~chr8 114588830 97187141 6 -- 0.867563 5 5 0 5 18 TCGA-DX-A1KZ-01A-11R-A24X-07 PHACTR3~RP11-236B18.2 fusion "PHACTR3," "RP11-236B18.2," chr20~chr10 58152672 92765902 11 ++ 1.414279 11 10 1 11 20 TCGA-DX-A1KZ-01A-11R-A24X-07 PIK3C2G~CTDSP2 fusion "PIK3C2G," "CTDSP2," chr12~chr12 18435693 58218102 18 +- 1.736121 17 8 9 17 24 TCGA-DX-A1KZ-01A-11R-A24X-07 PIP4K2C~Nchr12~69494876 intergenic "PIP4K2C," "-," chr12~chr12 57985213 69494876 5 ++ 0.500402 5 5 0 5 144 TCGA-DX-A1KZ-01A-11R-A24X-07 PIP4K2C~Nchr12~69494876 intergenic "PIP4K2C," "-," chr12~chr12 57985246 69494876 48 ++ 2.801061 47 21 24 47 168 TCGA-DX-A1KZ-01A-11R-A24X-07 PIP5K1C~PPM1H fusion "PIP5K1C," "PPM1H," chr19~chr12 3700295 63226059 3 -- 0.636514 2 2 0 2 22 TCGA-DX-A1KZ-01A-11R-A24X-07 PLBD1~Nchr12~58248751 intergenic "PLBD1," "-," chr12~chr12 14706127 58248751 8 -- 1.906155 5 5 0 5 4 TCGA-DX-A1KZ-01A-11R-A24X-07 PLBD1~Nchr12~58284096 intergenic "PLBD1," "-," chr12~chr12 14720516 58284096 10 -+ 0.940448 10 0 10 10 12 TCGA-DX-A1KZ-01A-11R-A24X-07 PLBD1~Nchr12~58284096 intergenic "PLBD1," "-," chr12~chr12 14706127 58284096 102 -+ 2.995639 101 43 58 101 304 TCGA-DX-A1KZ-01A-11R-A24X-07 PLEKHB2~GABRR1 fusion "PLEKHB2," "GABRR1," chr2~chr6 131862971 89899966 2 +- 0.693147 2 0 2 2 6 TCGA-DX-A1KZ-01A-11R-A24X-07 PLEKHB2~GABRR1 fusion "PLEKHB2," "GABRR1," chr2~chr6 131862971 89910984 30 +- 2.376159 28 0 28 28 56 TCGA-DX-A1KZ-01A-11R-A24X-07 PLEKHB2~GABRR1 fusion "PLEKHB2," "GABRR1," chr2~chr6 131862971 89913204 8 +- 1.732868 7 1 6 7 58 TCGA-DX-A1KZ-01A-11R-A24X-07 PLEKHB2~Nchr2~133374386 intergenic "PLEKHB2," "-," chr2~chr2 131884359 133374386 18 +- 1.873511 18 9 9 18 132 TCGA-DX-A1KZ-01A-11R-A24X-07 PLEKHB2~Nchr2~133374386 intergenic "PLEKHB2," "-," chr2~chr2 131884623 133374386 8 +- 1.494175 8 4 4 8 78 TCGA-DX-A1KZ-01A-11R-A24X-07 PLEKHG1~Nchr8~48655039 intergenic "PLEKHG1," "-," chr6~chr8 151140910 48655039 4 ++ 1.039721 4 1 3 4 40 TCGA-DX-A1KZ-01A-11R-A24X-07 PLEKHG1~Nchr8~48676878 intergenic "PLEKHG1," "-," chr6~chr8 151140910 48676878 16 ++ 2.100679 16 8 8 16 64 TCGA-DX-A1KZ-01A-11R-A24X-07 PPIL4~DCTN2 fusion "PPIL4," "DCTN2," chr6~chr12 149842196 57929628 4 -- 1.039721 4 1 3 4 14 TCGA-DX-A1KZ-01A-11R-A24X-07 PRMT8~TSPAN8 fusion "PRMT8," "TSPAN8," chr12~chr12 3620256 71523194 11 +- 1.46814 11 6 5 11 22 TCGA-DX-A1KZ-01A-11R-A24X-07 PRPF40B~CDH4 fusion "PRPF40B," "CDH4," chr12~chr20 49962506 60448784 21 ++ 2.37235 15 8 7 15 20 TCGA-DX-A1KZ-01A-11R-A24X-07 PSAT1~Nchr9~103755610 intergenic "PSAT1," "-," chr9~chr9 80912186 103755610 3 +- 0.636514 3 0 3 3 12 TCGA-DX-A1KZ-01A-11R-A24X-07 PTCH1~CENPP fusion "PTCH1," "CENPP,IPPK," chr9~chr9 98268689 95381847 11 -- 1.342113 10 6 4 10 34 TCGA-DX-A1KZ-01A-11R-A24X-07 PTPN3~SEMA5A fusion "PTPN3," "SEMA5A," chr9~chr5 112260499 9437964 2 -- 0.693147 2 2 0 2 6 TCGA-DX-A1KZ-01A-11R-A24X-07 PTPRR~Nchr12~74269121 intergenic "PTPRR," "-," chr12~chr12 71158445 74269121 6 -+ 1.011404 3 0 3 3 6 TCGA-DX-A1KZ-01A-11R-A24X-07 PTPRR~Nchr12~74312978 intergenic "PTPRR," "-," chr12~chr12 71158445 74312978 10 -+ 1.834372 6 1 5 6 18 TCGA-DX-A1KZ-01A-11R-A24X-07 PTPRS~Nchr12~67569522 intergenic "PTPRS," "-," chr19~chr12 5273453 67569522 4 -- 1.386294 2 2 0 2 106 TCGA-DX-A1KZ-01A-11R-A24X-07 PTPRS~Nchr12~67586281 intergenic "PTPRS," "-," chr19~chr12 5273453 67586281 286 -- 2.888026 302 101 176 302 598 TCGA-DX-A1KZ-01A-11R-A24X-07 PTPRS~Nchr12~67586281 intergenic "PTPRS," "-," chr19~chr12 5273521 67586281 5 -- 0.673012 5 0 5 5 276 TCGA-DX-A1KZ-01A-11R-A24X-07 PTPRS~Nchr5~173683466 intergenic "PTPRS," "-," chr19~chr5 5273453 173683466 16 -- 1.840749 15 4 11 15 42 TCGA-DX-A1KZ-01A-11R-A24X-07 RASSF8~Nchr12~7909713 intergenic "RASSF8," "-," chr12~chr12 26112081 7909713 8 ++ 1.732868 8 8 0 8 8 TCGA-DX-A1KZ-01A-11R-A24X-07 RP11-123O10.4~Nchr12~73711586 intergenic "RP11-123O10.4," "-," chr12~chr12 67462830 73711586 2 -- 0.693147 2 2 0 2 20 TCGA-DX-A1KZ-01A-11R-A24X-07 RP11-513G19.1~C12orf69 fusion "RP11-513G19.1," "C12orf69," chr12~chr12 26471937 14959630 2 +- 0.693147 2 2 0 2 12 TCGA-DX-A1KZ-01A-11R-A24X-07 RP11-571M6.15~Nchr12~71385831 intergenic "METTL21B,RP11-571M6.15," "-," chr12~chr12 58166911 71385831 2 ++ 0.693147 2 0 2 2 2 TCGA-DX-A1KZ-01A-11R-A24X-07 RP11-571M6.15~PTPRR fusion "METTL21B,RP11-571M6.15," "PTPRR," chr12~chr12 58166856 71158558 6 +- 1.56071 5 4 1 5 74 TCGA-DX-A1KZ-01A-11R-A24X-07 RP11-571M6.15~PTPRR fusion "METTL21B,RP11-571M6.15," "PTPRR," chr12~chr12 58166911 71158558 42 +- 2.603399 34 12 22 34 132 TCGA-DX-A1KZ-01A-11R-A24X-07 RP11-571M6.15~PTPRR fusion "METTL21B,RP11-571M6.15," "PTPRR," chr12~chr12 58166911 71167377 2 +- 0.693147 2 0 2 2 4 TCGA-DX-A1KZ-01A-11R-A24X-07 RP3-399L15.1~Nchr6~119485047 intergenic "RP3-399L15.1," "-," chr6~chr6 114809752 119485047 3 -- 0.636514 2 2 0 2 12 TCGA-DX-A1KZ-01A-11R-A24X-07 SENP6~Nchr6~154021266 intergenic "SENP6," "-," chr6~chr6 76407233 154021266 3 +- 0.636514 1 0 1 1 18 TCGA-DX-A1KZ-01A-11R-A24X-07 SIPA1~Nchr2~120487951 intergenic "SIPA1," "-," chr11~chr2 65405653 120487951 7 +- 1.153742 7 0 7 7 20 TCGA-DX-A1KZ-01A-11R-A24X-07 SIRT1~C10orf100 fusion "SIRT1," "C10orf100," chr10~chr10 69647291 83990121 9 +- 1.889159 9 3 6 9 14 TCGA-DX-A1KZ-01A-11R-A24X-07 SPATS2~Nchr12~73433395 intergenic "SPATS2," "-," chr12~chr12 49893988 73433395 58 ++ 2.634015 56 48 8 56 334 TCGA-DX-A1KZ-01A-11R-A24X-07 SPATS2~Nchr12~74243523 intergenic "SPATS2," "-," chr12~chr12 49893988 74243523 3 +- 0.636514 3 2 1 3 16 TCGA-DX-A1KZ-01A-11R-A24X-07 SSPN~Nchr12~103163246 intergenic "SSPN," "-," chr12~chr12 26377312 103163246 9 ++ 1.464816 9 3 6 9 46 TCGA-DX-A1KZ-01A-11R-A24X-07 SSPN~Nchr12~103163246 intergenic "SSPN," "-," chr12~chr12 26378156 103163246 3 ++ 0.636514 3 2 1 3 8 TCGA-DX-A1KZ-01A-11R-A24X-07 SSPN~Nchr12~103164141 intergenic "SSPN," "-," chr12~chr12 26377312 103164141 4 ++ 1.039721 3 0 3 3 34 TCGA-DX-A1KZ-01A-11R-A24X-07 STX8~Nchr17~12254018 intergenic "STX8," "-," chr17~chr17 9471688 12254018 8 -- 1.732868 7 1 6 7 80 TCGA-DX-A1KZ-01A-11R-A24X-07 TBC1D15~CPM fusion "TBC1D15," "CPM," chr12~chr12 72233591 69252851 166 +- 2.975332 161 159 0 161 4 TCGA-DX-A1KZ-01A-11R-A24X-07 TBC1D15~CPM fusion "TBC1D15," "CPM," chr12~chr12 72235011 69252851 2 +- 0.693147 2 1 1 2 16 TCGA-DX-A1KZ-01A-11R-A24X-07 TEAD4~MAP3K12 fusion "TEAD4," "MAP3K12," chr12~chr12 3069206 53880929 6 +- 1.329661 6 1 5 6 36 TCGA-DX-A1KZ-01A-11R-A24X-07 TH1L~Nchr8~17282321 intergenic "TH1L," "-," chr20~chr8 57564695 17282321 7 +- 0.410116 7 6 1 7 12 TCGA-DX-A1KZ-01A-11R-A24X-07 TH1L~Nchr8~17301201 intergenic "TH1L," "-," chr20~chr8 57564695 17301201 3 +- 0.636514 3 1 2 3 4 TCGA-DX-A1KZ-01A-11R-A24X-07 TH1L~Nchr8~17303438 intergenic "TH1L," "-," chr20~chr8 57564695 17303438 7 +- 1.277034 7 1 6 7 26 TCGA-DX-A1KZ-01A-11R-A24X-07 TM7SF3~KCNC2 fusion "TM7SF3," "KCNC2," chr12~chr12 27148170 75445097 3 -- 1.098612 3 2 1 3 46 TCGA-DX-A1KZ-01A-11R-A24X-07 TM7SF3~KCNC2 fusion "TM7SF3," "KCNC2," chr12~chr12 27143383 75445097 31 -- 2.133088 31 14 17 31 146 TCGA-DX-A1KZ-01A-11R-A24X-07 TM7SF3~Nchr12~69516890 intergenic "TM7SF3," "-," chr12~chr12 27143383 69516890 20 -+ 2.345737 17 13 4 17 56 TCGA-DX-A1KZ-01A-11R-A24X-07 TM7SF3~Nchr12~69517839 intergenic "TM7SF3," "-," chr12~chr12 27143383 69517839 37 -+ 2.744209 20 19 1 20 18 TCGA-DX-A1KZ-01A-11R-A24X-07 TM7SF3~Nchr12~74776791 intergenic "TM7SF3," "-," chr12~chr12 27152459 74776791 32 -+ 2.636891 31 15 16 31 180 TCGA-DX-A1KZ-01A-11R-A24X-07 TM7SF3~Nchr12~74814670 intergenic "TM7SF3," "-," chr12~chr12 27152459 74814670 2 -+ 0.693147 2 0 2 2 6 TCGA-DX-A1KZ-01A-11R-A24X-07 TM7SF3~Nchr12~74819102 intergenic "TM7SF3," "-," chr12~chr12 27152459 74819102 5 -+ 1.329661 6 2 3 6 24 TCGA-DX-A1KZ-01A-11R-A24X-07 TM7SF3~Nchr12~74819102 intergenic "TM7SF3," "-," chr12~chr12 27167011 74819102 11 -+ 1.414279 11 3 8 11 18 TCGA-DX-A1KZ-01A-11R-A24X-07 TM7SF3~Nchr12~74819102 intergenic "TM7SF3," "-," chr12~chr12 27156169 74819102 9 -+ 1.907284 12 5 4 12 36 TCGA-DX-A1KZ-01A-11R-A24X-07 TM7SF3~Nchr12~7832211 intergenic "TM7SF3," "-," chr12~chr12 27167011 7832211 6 -+ 1.011404 6 6 0 6 16 TCGA-DX-A1KZ-01A-11R-A24X-07 TM7SF3~RP1-137K24.1 fusion "TM7SF3," "RP1-137K24.1," chr12~chr5 27167011 15243876 2 -- 0.693147 1 0 1 1 4 TCGA-DX-A1KZ-01A-11R-A24X-07 TM7SF4~TSPAN31 fusion "TM7SF4," "TSPAN31," chr8~chr12 105352668 58139528 3 ++ 0.636514 3 3 0 3 42 TCGA-DX-A1KZ-01A-11R-A24X-07 TM7SF4~TSPAN31 fusion "TM7SF4," "TSPAN31," chr8~chr12 105352668 58140372 7 ++ 1.747868 6 3 3 6 36 TCGA-DX-A1KZ-01A-11R-A24X-07 TMEM41B~Nchr9~10722270 intergenic "TMEM41B," "-," chr11~chr9 9314877 10722270 2 -+ 0.693147 2 0 2 2 8 TCGA-DX-A1KZ-01A-11R-A24X-07 TNKS~Nchr2~122050665 intergenic "TNKS," "-," chr8~chr2 9590954 122050665 10 +- 2.025326 10 0 10 10 20 TCGA-DX-A1KZ-01A-11R-A24X-07 TRIO~Nchr5~15492750 intergenic "TRIO," "-," chr5~chr5 14304701 15492750 6 ++ 1.329661 6 2 4 6 2 TCGA-DX-A1KZ-01A-11R-A24X-07 TRIO~Nchr5~15495163 intergenic "TRIO," "-," chr5~chr5 14304701 15495163 125 ++ 2.955247 128 53 72 128 436 TCGA-DX-A1KZ-01A-11R-A24X-07 TRIO~Nchr5~15560654 intergenic "TRIO," "-," chr5~chr5 14304701 15560654 7 ++ 1.004242 7 3 4 7 4 TCGA-DX-A1KZ-01A-11R-A24X-07 TRIO~RP11-64P14.7 fusion "TRIO," "RP11-64P14.7," chr5~chr9 14271008 125399382 2 ++ 0.693147 2 1 1 2 16 TCGA-DX-A1KZ-01A-11R-A24X-07 TRIO~RP11-64P14.7 fusion "TRIO," "RP11-64P14.7," chr5~chr9 14271008 125399385 7 ++ 1.475076 6 0 6 6 16 TCGA-DX-A1KZ-01A-11R-A24X-07 TSFM~DOCK2 fusion "TSFM," "DOCK2," chr12~chr5 58186856 169174400 5 ++ 1.609438 3 2 1 3 18 TCGA-DX-A1KZ-01A-11R-A24X-07 TSFM~Nchr12~81082052 intergenic "TSFM," "-," chr12~chr12 58180945 81082052 37 +- 2.441867 36 15 21 36 314 TCGA-DX-A1KZ-01A-11R-A24X-07 TSPAN14~Nchr10~82436742 intergenic "TSPAN14," "-," chr10~chr10 82269227 82436742 11 +- 1.84622 11 7 4 11 14 TCGA-DX-A1KZ-01A-11R-A24X-07 TSPAN31~ITPR2 fusion "TSPAN31," "ITPR2," chr12~chr12 58140503 26648193 11 +- 2.271869 11 6 5 11 82 TCGA-DX-A1KZ-01A-11R-A24X-07 TSPAN31~ITPR2 fusion "TSPAN31," "ITPR2," chr12~chr12 58140539 26648193 17 +- 2.099293 15 6 9 15 90 TCGA-DX-A1KZ-01A-11R-A24X-07 TSPAN31~ITPR2 fusion "TSPAN31," "ITPR2," chr12~chr12 58140551 26648193 6 +- 1.791759 6 4 2 6 86 TCGA-DX-A1KZ-01A-11R-A24X-07 TSPAN9~Nchr12~58576860 intergenic "TSPAN9," "-," chr12~chr12 3192885 58576860 3 +- 1.098612 3 2 1 3 32 TCGA-DX-A1KZ-01A-11R-A24X-07 TSPAN9~Nchr12~58626879 intergenic "TSPAN9," "-," chr12~chr12 3192885 58626879 2 +- 0.693147 2 2 0 2 12 TCGA-DX-A1KZ-01A-11R-A24X-07 TSPAN9~Nchr12~58655839 intergenic "TSPAN9," "-," chr12~chr12 3192885 58655839 8 +- 1.386294 8 8 0 8 60 TCGA-DX-A1KZ-01A-11R-A24X-07 TSPAN9~Nchr12~58677492 intergenic "TSPAN9," "-," chr12~chr12 3186619 58677492 11 +- 1.972247 8 0 8 8 44 TCGA-DX-A1KZ-01A-11R-A24X-07 TSPAN9~Nchr12~58677492 intergenic "TSPAN9," "-," chr12~chr12 3192885 58677492 58 +- 2.684205 32 12 20 32 228 TCGA-DX-A1KZ-01A-11R-A24X-07 TULP3~CTD-2021H9.3 fusion "TULP3," "CTD-2021H9.3," chr12~chr12 3000154 71441459 49 +- 2.430876 48 9 39 48 524 TCGA-DX-A1KZ-01A-11R-A24X-07 TULP3~FAM190B fusion "TULP3," "FAM190B," chr12~chr10 3043727 86177527 10 ++ 1.834372 10 8 2 10 32 TCGA-DX-A1KZ-01A-11R-A24X-07 TULP3~Nchr12~71442394 intergenic "TULP3," "-," chr12~chr12 3000154 71442394 8 +- 1.386294 7 0 7 7 526 TCGA-DX-A1KZ-01A-11R-A24X-07 TULP3~UGCG fusion "TULP3," "UGCG," chr12~chr9 3043727 114676885 3 ++ 1.098612 3 2 1 3 8 TCGA-DX-A1KZ-01A-11R-A24X-07 USP54~ADK fusion "USP54," "ADK," chr10~chr10 75385695 76349040 7 -+ 1.549826 5 2 3 5 6 TCGA-DX-A1KZ-01A-11R-A24X-07 VAMP1~MARCH11 fusion "VAMP1," "MARCH11," chr12~chr5 6574056 16067902 2 -- 0.693147 2 1 1 2 2 TCGA-DX-A1KZ-01A-11R-A24X-07 VAMP1~MARCH11 fusion "VAMP1," "MARCH11," chr12~chr5 6574056 16091190 4 -- 1.039721 4 1 3 4 4 TCGA-DX-A1KZ-01A-11R-A24X-07 WBP11~LGR5 fusion "WBP11," "LGR5," chr12~chr12 14956286 71898394 30 -+ 2.574632 22 12 10 22 20 TCGA-DX-A1KZ-01A-11R-A24X-07 WBP11~LGR5 fusion "WBP11," "LGR5," chr12~chr12 14954254 71898394 14 -+ 2.007556 11 8 3 11 38 TCGA-DX-A1KZ-01A-11R-A24X-07 WBP11~LGR5 fusion "WBP11," "LGR5," chr12~chr12 14953686 71898394 15 -+ 2.211069 13 10 3 13 54 TCGA-DX-A1KZ-01A-11R-A24X-07 WWP1~Nchr12~58265871 intergenic "WWP1," "-," chr8~chr12 87455007 58265871 13 +- 1.524707 13 11 2 13 24 TCGA-DX-A1KZ-01A-11R-A24X-07 WWP1~Nchr12~58266759 intergenic "WWP1," "-," chr8~chr12 87455007 58266759 2 +- 0.693147 2 2 0 2 8 TCGA-DX-A1KZ-01A-11R-A24X-07 WWP1~Nchr12~58270010 intergenic "WWP1," "-," chr8~chr12 87455007 58270010 6 +- 1.56071 6 4 2 6 30 TCGA-DX-A1KZ-01A-11R-A24X-07 WWP1~Nchr12~58280559 intergenic "WWP1," "-," chr8~chr12 87455007 58280559 4 +- 1.039721 4 1 3 4 20 TCGA-DX-A1KZ-01A-11R-A24X-07 ZNF622~Nchr8~2517491 intergenic "ZNF622," "-," chr5~chr8 16458626 2517491 2 -- 0.693147 2 1 1 2 4 TCGA-DX-A1KU-01A-32R-A24X-07 ADAMTS17~Nchr15~94573630 intergenic "ADAMTS17," "-," chr15~chr15 100739523 94573630 11 -- 1.499031 11 11 0 11 6 TCGA-DX-A1KU-01A-32R-A24X-07 ASPM~Nchr12~65963828 intergenic "ASPM," "-," chr1~chr12 197091045 65963828 7 -- 1.549826 7 3 4 7 10 TCGA-DX-A1KU-01A-32R-A24X-07 ASPM~Nchr12~66007057 intergenic "ASPM," "-," chr1~chr12 197091045 66007057 8 -- 1.906155 7 3 4 7 4 TCGA-DX-A1KU-01A-32R-A24X-07 ASPM~PIGC fusion "ASPM," "PIGC," chr1~chr1 197115271 172384514 14 -- 1.94591 14 10 4 14 62 TCGA-DX-A1KU-01A-32R-A24X-07 ATHL1~Nchr5~2248484 intergenic "ATHL1," "-," chr11~chr5 292997 2248484 7 ++ 1.475076 7 4 3 7 42 TCGA-DX-A1KU-01A-32R-A24X-07 BEST1~Nchr11~77445551 intergenic "BEST1,FTH1," "-," chr11~chr11 61732197 77445551 4 -- 1.039721 1 1 0 1 122 TCGA-DX-A1KU-01A-32R-A24X-07 BLZF1~Nchr12~69371801 intergenic "BLZF1," "-," chr1~chr12 169356447 69371801 8 +- 1.732868 8 5 3 8 18 TCGA-DX-A1KU-01A-32R-A24X-07 C18orf10~Nchr18~38468121 intergenic "C18orf10," "-," chr18~chr18 34378412 38468121 31 -+ 2.595284 31 18 13 31 66 TCGA-DX-A1KU-01A-32R-A24X-07 C1orf49~Nchr12~69465962 intergenic "C1orf49,AL513013.1,C1orf220," "-," chr1~chr12 178516298 69465962 3 +- 1.098612 3 1 2 3 20 TCGA-DX-A1KU-01A-32R-A24X-07 C1orf9~Nchr12~75727730 intergenic "C1orf9," "-," chr1~chr12 172548407 75727730 4 ++ 1.039721 4 4 0 4 22 TCGA-DX-A1KU-01A-32R-A24X-07 C1orf9~Nchr12~75727730 intergenic "C1orf9," "-," chr1~chr12 172555088 75727730 55 ++ 2.752574 55 24 30 55 208 TCGA-DX-A1KU-01A-32R-A24X-07 CCT5~Nchr5~3191853 intergenic "CCT5," "-," chr5~chr5 10254317 3191853 5 ++ 0.950271 5 3 2 5 6 TCGA-DX-A1KU-01A-32R-A24X-07 CFH~ASPM fusion "CFH," "ASPM," chr1~chr1 196696070 197111559 6 +- 1.56071 6 3 3 6 44 TCGA-DX-A1KU-01A-32R-A24X-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266738 94038082 3 -+ 1.098612 2 1 1 2 2 TCGA-DX-A1KU-01A-32R-A24X-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271304 94055762 2 -+ 0.693147 2 2 0 2 8 TCGA-DX-A1KU-01A-32R-A24X-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266103 189864568 3 -+ 1.098612 2 2 0 2 4 TCGA-DX-A1KU-01A-32R-A24X-07 COPA~MDM2 fusion "COPA," "MDM2," chr1~chr12 160309699 69202988 4 -+ 1.039721 4 1 3 4 8 TCGA-DX-A1KU-01A-32R-A24X-07 CPM~CCT2 fusion "CPM," "CCT2," chr12~chr12 69279572 69986756 44 -+ 2.459126 44 28 16 44 178 TCGA-DX-A1KU-01A-32R-A24X-07 CTDSP2~Nchr2~120977966 intergenic "CTDSP2," "-," chr12~chr2 58240155 120977966 7 -+ 1.747868 5 1 4 5 20 TCGA-DX-A1KU-01A-32R-A24X-07 CTDSP2~RALB fusion "CTDSP2," "RALB," chr12~chr2 58240155 121036191 6 -+ 1.56071 6 0 6 6 52 TCGA-DX-A1KU-01A-32R-A24X-07 CTDSP2~RALB fusion "CTDSP2," "RALB," chr12~chr2 58240155 121036194 18 -+ 1.731026 18 1 16 18 52 TCGA-DX-A1KU-01A-32R-A24X-07 CTDSP2~RP5-1116C7.1 fusion "CTDSP2," "RP5-1116C7.1," chr12~chr1 58220129 172113577 3 -- 0.636514 3 0 3 3 12 TCGA-DX-A1KU-01A-32R-A24X-07 DENND1B~TSPAN31 fusion "DENND1B," "TSPAN31," chr1~chr12 197741998 58139528 7 -+ 1.277034 7 4 3 7 38 TCGA-DX-A1KU-01A-32R-A24X-07 DENND1B~TSPAN31 fusion "DENND1B," "TSPAN31," chr1~chr12 197741998 58140372 43 -+ 2.758864 41 13 28 41 234 TCGA-DX-A1KU-01A-32R-A24X-07 DLGAP1~METTL4 fusion "DLGAP1," "METTL4," chr18~chr18 3814059 2567653 4 -- 1.039721 3 0 3 3 20 TCGA-DX-A1KU-01A-32R-A24X-07 DSG2~Nchr18~10203397 intergenic "DSG2," "-," chr18~chr18 29078259 10203397 4 ++ 0.693147 4 4 0 4 2 TCGA-DX-A1KU-01A-32R-A24X-07 EIF3M~UEVLD fusion "EIF3M," "UEVLD," chr11~chr11 32617593 18591924 29 +- 2.575688 29 20 9 29 208 TCGA-DX-A1KU-01A-32R-A24X-07 FKTN~Nchr9~110705421 intergenic "FKTN," "-," chr9~chr9 108337418 110705421 38 +- 2.60142 36 13 21 36 114 TCGA-DX-A1KU-01A-32R-A24X-07 GALNTL4~PARVA fusion "GALNTL4," "PARVA," chr11~chr11 11642906 12549396 5 -+ 1.332179 5 3 2 5 16 TCGA-DX-A1KU-01A-32R-A24X-07 GXYLT1~ACP6 fusion "GXYLT1," "ACP6," chr12~chr1 42538228 147122041 3 -- 1.098612 3 3 0 3 2 TCGA-DX-A1KU-01A-32R-A24X-07 HBG2~Nchr11~15697039 intergenic "AC104389.28,HBG2,AC104389.28," "-," chr11~chr11 5367003 15697039 4 -- 1.386294 3 1 2 3 12 TCGA-DX-A1KU-01A-32R-A24X-07 HMCN1~Nchr1~170855997 intergenic "HMCN1," "-," chr1~chr1 185992285 170855997 4 ++ 1.386294 4 2 2 4 20 TCGA-DX-A1KU-01A-32R-A24X-07 HMGA2~RP11-81H14.2 fusion "HMGA2," "RP11-81H14.2," chr12~chr12 66232349 68835921 5 +- 1.05492 4 0 4 4 22 TCGA-DX-A1KU-01A-32R-A24X-07 HMGA2~RP11-81H14.2 fusion "HMGA2," "RP11-81H14.2," chr12~chr12 66232349 68845332 2 +- 0.693147 1 1 0 1 32 TCGA-DX-A1KU-01A-32R-A24X-07 IRAK3~Nchr1~185624135 intergenic "IRAK3," "-," chr12~chr1 66611015 185624135 7 ++ 1.549826 7 2 5 7 12 TCGA-DX-A1KU-01A-32R-A24X-07 IRAK3~Nchr1~185648581 intergenic "IRAK3," "-," chr12~chr1 66611015 185648581 2 ++ 0.693147 2 1 1 2 8 TCGA-DX-A1KU-01A-32R-A24X-07 KIFAP3~RP11-150C16.1 fusion "KIFAP3," "RP11-150C16.1," chr1~chr12 170001027 59396535 8 -+ 1.494175 7 3 4 7 14 TCGA-DX-A1KU-01A-32R-A24X-07 LRIG3~SLC16A7 fusion "LRIG3," "SLC16A7," chr12~chr12 59267837 60141328 11 -+ 1.263654 11 9 2 11 18 TCGA-DX-A1KU-01A-32R-A24X-07 LRIG3~SLC16A7 fusion "LRIG3," "SLC16A7," chr12~chr12 59267837 60154906 5 -+ 1.609438 5 0 5 5 80 TCGA-DX-A1KU-01A-32R-A24X-07 LRIG3~SLC16A7 fusion "LRIG3," "SLC16A7," chr12~chr12 59267837 60165000 23 -+ 2.510008 23 9 14 23 92 TCGA-DX-A1KU-01A-32R-A24X-07 MARCH6~GALNTL4 fusion "MARCH6," "GALNTL4," chr5~chr11 10411649 11400811 12 +- 1.704551 12 10 2 12 32 TCGA-DX-A1KU-01A-32R-A24X-07 MARCH6~GALNTL4 fusion "MARCH6," "GALNTL4," chr5~chr11 10411649 11401663 5 +- 0.950271 5 0 5 5 6 TCGA-DX-A1KU-01A-32R-A24X-07 MDM1~CCDC41 fusion "MDM1," "CCDC41," chr12~chr12 68726008 94818202 9 -- 1.310784 9 0 9 9 42 TCGA-DX-A1KU-01A-32R-A24X-07 MDM1~Nchr12~73399085 intergenic "MDM1," "-," chr12~chr12 68724887 73399085 3 -- 0.636514 1 0 1 1 294 TCGA-DX-A1KU-01A-32R-A24X-07 MDM1~Nchr12~73399106 intergenic "MDM1," "-," chr12~chr12 68724887 73399106 87 -- 2.667896 63 20 43 63 360 TCGA-DX-A1KU-01A-32R-A24X-07 MDM1~RAP1B fusion "MDM1," "RAP1B," chr12~chr12 68707223 69044180 14 -+ 1.772139 9 6 3 9 12 TCGA-DX-A1KU-01A-32R-A24X-07 MDM1~RBMS2 fusion "MDM1," "RBMS2," chr12~chr12 68726008 56974968 17 -+ 1.925408 17 16 1 17 66 TCGA-DX-A1KU-01A-32R-A24X-07 MDM2~Nchr12~63703011 intergenic "MDM2," "-," chr12~chr12 69222711 63703011 66 ++ 2.66335 67 35 30 67 1262 TCGA-DX-A1KU-01A-32R-A24X-07 MDM2~Nchr12~63718177 intergenic "MDM2," "-," chr12~chr12 69222711 63718177 19 ++ 1.689245 17 5 12 17 720 TCGA-DX-A1KU-01A-32R-A24X-07 MDM2~Nchr12~63721822 intergenic "MDM2," "-," chr12~chr12 69222711 63721822 492 ++ 3.068116 477 246 231 477 1578 TCGA-DX-A1KU-01A-32R-A24X-07 MDM2~Nchr12~63721822 intergenic "MDM2," "-," chr12~chr12 69218431 63721822 6 ++ 1.329661 6 4 2 6 196 TCGA-DX-A1KU-01A-32R-A24X-07 MDM2~Nchr12~63740649 intergenic "MDM2," "-," chr12~chr12 69222711 63740649 4 ++ 1.386294 4 2 2 4 18 TCGA-DX-A1KU-01A-32R-A24X-07 MICAL2~NELL1 fusion "MICAL2," "NELL1," chr11~chr11 12183966 21392399 25 ++ 2.487896 17 13 4 17 24 TCGA-DX-A1KU-01A-32R-A24X-07 MICB~MICA fusion "MICB," "MICA," chr6~chr6 31474914 31380102 4 ++ 1.039721 2 2 0 2 2 TCGA-DX-A1KU-01A-32R-A24X-07 MR1~Nchr1~185415718 intergenic "MR1," "-," chr1~chr1 181019785 185415718 56 ++ 2.95257 56 39 17 56 156 TCGA-DX-A1KU-01A-32R-A24X-07 NCKAP5L~Nchr9~110620380 intergenic "NCKAP5L," "-," chr12~chr9 50222105 110620380 26 -- 2.651462 26 2 24 26 186 TCGA-DX-A1KU-01A-32R-A24X-07 NCKAP5L~Nchr9~110620380 intergenic "NCKAP5L," "-," chr12~chr9 50210689 110620380 3 -- 0.636514 3 3 0 3 186 TCGA-DX-A1KU-01A-32R-A24X-07 NCKAP5L~Nchr9~110620395 intergenic "NCKAP5L," "-," chr12~chr9 50222105 110620395 5 -- 1.791759 6 0 5 6 190 TCGA-DX-A1KU-01A-32R-A24X-07 NELL1~Nchr11~20296902 intergenic "NELL1," "-," chr11~chr11 20699606 20296902 5 +- 0.950271 5 1 4 5 2 TCGA-DX-A1KU-01A-32R-A24X-07 NME7~C1orf114 fusion "NME7," "C1orf114," chr1~chr1 169336946 169394188 4 -- 1.039721 4 0 4 4 16 TCGA-DX-A1KU-01A-32R-A24X-07 NUP107~Nchr12~69440775 intergenic "NUP107," "-," chr12~chr12 69115932 69440775 19 ++ 2.083126 19 7 12 19 54 TCGA-DX-A1KU-01A-32R-A24X-07 NUP98~Nchr11~12983191 intergenic "NUP98," "-," chr11~chr11 3774546 12983191 23 -- 1.907271 23 8 15 23 72 TCGA-DX-A1KU-01A-32R-A24X-07 Nchr11~22859910~RP11-266A24.1 intergenic "-," "RP11-266A24.1," chr11~chr11 22859910 23224544 2 ++ 0.693147 2 1 1 2 10 TCGA-DX-A1KU-01A-32R-A24X-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 12 -+ 1.632631 8 0 8 8 20 TCGA-DX-A1KU-01A-32R-A24X-07 Nchr12~57824848~RAP1B intergenic "-," "RAP1B," chr12~chr12 57824848 69044180 5 -+ 1.05492 3 0 3 3 4 TCGA-DX-A1KU-01A-32R-A24X-07 Nchr12~65911388~RAP1B intergenic "-," "RAP1B," chr12~chr12 65911388 69044180 114 -+ 2.871897 55 0 55 55 116 TCGA-DX-A1KU-01A-32R-A24X-07 Nchr12~65915642~RAP1B intergenic "-," "RAP1B," chr12~chr12 65915642 69044180 6 -+ 1.329661 6 0 6 6 10 TCGA-DX-A1KU-01A-32R-A24X-07 Nchr12~73398935~PPM1H intergenic "-," "PPM1H," chr12~chr12 73398935 63118064 8 -+ 2.043192 7 3 3 7 186 TCGA-DX-A1KU-01A-32R-A24X-07 Nchr12~73398935~PPM1H intergenic "-," "PPM1H," chr12~chr12 73398935 63118995 6 -+ 1.011404 6 1 5 6 158 TCGA-DX-A1KU-01A-32R-A24X-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 7 -- 1.549826 1 0 1 1 4 TCGA-DX-A1KU-01A-32R-A24X-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 18 -+ 2.128549 17 9 7 17 194 TCGA-DX-A1KU-01A-32R-A24X-07 Nchr1~147102866~MDN1 intergenic "-," "MDN1," chr1~chr6 147102866 90431046 56 +- 2.689207 51 0 51 51 248 TCGA-DX-A1KU-01A-32R-A24X-07 Nchr1~147104176~MDN1 intergenic "-," "MDN1," chr1~chr6 147104176 90431046 17 +- 1.823873 17 0 17 17 16 TCGA-DX-A1KU-01A-32R-A24X-07 Nchr1~147106227~MDN1 intergenic "-," "MDN1," chr1~chr6 147106227 90431046 13 +- 1.95126 13 0 13 13 84 TCGA-DX-A1KU-01A-32R-A24X-07 Nchr1~168869719~CCT2 intergenic "-," "CCT2," chr1~chr12 168869719 69986756 10 -+ 0.610864 7 4 3 7 6 TCGA-DX-A1KU-01A-32R-A24X-07 Nchr1~173835666~Nchr1~147102866 intergenic "-," "-," chr1~chr1 173835666 147102866 112 -- 2.511717 114 77 35 114 424 TCGA-DX-A1KU-01A-32R-A24X-07 Nchr1~173835666~Nchr1~147104176 intergenic "-," "-," chr1~chr1 173835666 147104176 15 -- 2.211069 14 5 9 14 32 TCGA-DX-A1KU-01A-32R-A24X-07 Nchr1~173835666~Nchr1~147106227 intergenic "-," "-," chr1~chr1 173835666 147106227 40 -- 2.094811 40 29 11 40 150 TCGA-DX-A1KU-01A-32R-A24X-07 Nchr3~112316463~Nchr3~112316311 intergenic "-," "-," chr3~chr3 112316463 112316311 5 ++ 0.673012 2 0 2 2 8 TCGA-DX-A1KU-01A-32R-A24X-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 6 ++ 1.329661 6 6 0 6 4 TCGA-DX-A1KU-01A-32R-A24X-07 Nchr7~122851497~Nchr7~123096679 intergenic "-," "-," chr7~chr7 122851497 123096679 44 ++ 2.141672 43 0 43 43 144 TCGA-DX-A1KU-01A-32R-A24X-07 Nchr7~140912504~Nchr7~141137408 intergenic "-," "-," chr7~chr7 140912504 141137408 2 ++ 0.693147 1 0 1 1 4 TCGA-DX-A1KU-01A-32R-A24X-07 PARVA~AC104389.28 fusion "PARVA," "AC104389.28," chr11~chr11 12399330 5368140 7 +- 1.549826 4 4 0 4 18 TCGA-DX-A1KU-01A-32R-A24X-07 PARVA~HBG2 fusion "PARVA," "AC104389.28,HBG2,AC104389.28," chr11~chr11 12399330 5367129 3 +- 1.098612 2 0 2 2 4 TCGA-DX-A1KU-01A-32R-A24X-07 PARVA~Nchr11~15697039 intergenic "PARVA," "-," chr11~chr11 12399330 15697039 5 +- 1.332179 3 0 3 3 8 TCGA-DX-A1KU-01A-32R-A24X-07 PARVA~RP11-531H8.2 fusion "PARVA," "RP11-531H8.2," chr11~chr11 12399330 15593946 6 +- 1.329661 6 0 6 6 20 TCGA-DX-A1KU-01A-32R-A24X-07 PBX1~Nchr1~171320470 intergenic "PBX1," "-," chr1~chr1 164532548 171320470 11 +- 1.84622 8 6 2 8 22 TCGA-DX-A1KU-01A-32R-A24X-07 PBX1~Nchr1~171391170 intergenic "PBX1," "-," chr1~chr1 164532548 171391170 62 +- 2.68068 61 29 32 61 308 TCGA-DX-A1KU-01A-32R-A24X-07 PDE4DIP~COPA fusion "PDE4DIP," "COPA," chr1~chr1 145039590 160283915 10 -- 1.886697 10 5 5 10 28 TCGA-DX-A1KU-01A-32R-A24X-07 PEX19~CD1C fusion "DCAF8,PEX19," "CD1C," chr1~chr1 160206925 158260924 14 -+ 1.932807 14 4 10 14 24 TCGA-DX-A1KU-01A-32R-A24X-07 PIK3C2A~Nchr11~5902659 intergenic "PIK3C2A," "-," chr11~chr11 17225854 5902659 6 -- 1.011404 6 6 0 6 12 TCGA-DX-A1KU-01A-32R-A24X-07 PPP5C~Nchr19~46732762 intergenic "PPP5C," "-," chr19~chr19 46857246 46732762 5 ++ 0.673012 5 2 3 5 14 TCGA-DX-A1KU-01A-32R-A24X-07 PRRG4~ZNF215 fusion "PRRG4," "ZNF215," chr11~chr11 32861785 6953325 14 ++ 2.242973 13 11 2 13 80 TCGA-DX-A1KU-01A-32R-A24X-07 QSER1~RP11-222N13.1 fusion "QSER1," "RP11-222N13.1," chr11~chr11 32914880 15944830 3 ++ 0.636514 3 1 2 3 10 TCGA-DX-A1KU-01A-32R-A24X-07 R3HDM2~RAP1B fusion "R3HDM2," "RAP1B," chr12~chr12 57804274 69044180 3 -+ 0.636514 1 1 0 1 12 TCGA-DX-A1KU-01A-32R-A24X-07 R3HDM2~RAP1B fusion "R3HDM2," "RAP1B," chr12~chr12 57824327 69044180 13 -+ 1.991509 7 0 7 7 12 TCGA-DX-A1KU-01A-32R-A24X-07 R3HDM2~RAP1B fusion "R3HDM2," "RAP1B," chr12~chr12 57824503 69044180 442 -+ 3.068718 242 0 242 242 188 TCGA-DX-A1KU-01A-32R-A24X-07 RAP1B~DPT fusion "RAP1B," "DPT," chr12~chr1 69004823 168683584 204 +- 3.003293 193 188 4 193 332 TCGA-DX-A1KU-01A-32R-A24X-07 RAP1B~DPT fusion "RAP1B," "DPT," chr12~chr1 69004832 168683584 66 +- 2.848619 61 54 7 61 464 TCGA-DX-A1KU-01A-32R-A24X-07 RAP1B~Nchr12~58655839 intergenic "RAP1B," "-," chr12~chr12 69004823 58655839 16 +- 2.220025 13 13 0 13 16 TCGA-DX-A1KU-01A-32R-A24X-07 RAP1B~Nchr12~65911483 intergenic "RAP1B," "-," chr12~chr12 69004832 65911483 28 +- 2.366266 3 2 1 3 38 TCGA-DX-A1KU-01A-32R-A24X-07 RAP1B~Nchr12~65911483 intergenic "RAP1B," "-," chr12~chr12 69004823 65911483 28 +- 2.632506 1 0 1 1 32 TCGA-DX-A1KU-01A-32R-A24X-07 RAP1B~Nchr12~65913322 intergenic "RAP1B," "-," chr12~chr12 69004823 65913322 4 +- 1.386294 2 2 0 2 34 TCGA-DX-A1KU-01A-32R-A24X-07 RAP1B~RP11-366L20.2 fusion "RAP1B," "RP11-366L20.2," chr12~chr12 69004832 66260734 5 +- 0.673012 5 5 0 5 6 TCGA-DX-A1KU-01A-32R-A24X-07 RAP1B~RP11-366L20.2 fusion "RAP1B," "RP11-366L20.2," chr12~chr12 69004823 66260734 6 +- 1.329661 6 6 0 6 4 TCGA-DX-A1KU-01A-32R-A24X-07 RAP1B~RP11-366L20.2 fusion "RAP1B," "RP11-366L20.2," chr12~chr12 69004823 66270912 6 +- 0.636514 6 6 0 6 24 TCGA-DX-A1KU-01A-32R-A24X-07 RAP1B~RP11-366L20.2 fusion "RAP1B," "RP11-366L20.2," chr12~chr12 69004832 66270912 2 +- 0.693147 2 2 0 2 36 TCGA-DX-A1KU-01A-32R-A24X-07 RASAL2~Nchr12~74336041 intergenic "RASAL2," "-," chr1~chr12 178063829 74336041 2 +- 0.693147 1 0 1 1 8 TCGA-DX-A1KU-01A-32R-A24X-07 RP11-357C3.3~NchrX~62479694 intergenic "RP11-357C3.3," "-," chrX~chrX 62780712 62479694 6 -- 1.329661 5 2 3 5 2 TCGA-DX-A1KU-01A-32R-A24X-07 RP11-576I22.2~ATP1B1 fusion "RP11-576I22.2," "ATP1B1," chr1~chr1 170480525 169100530 6 -+ 1.329661 5 3 2 5 34 TCGA-DX-A1KU-01A-32R-A24X-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 6 ++ 1.329661 6 3 3 6 20 TCGA-DX-A1KU-01A-32R-A24X-07 RUNX1~Nchr21~36467420 intergenic "RUNX1," "-," chr21~chr21 36421139 36467420 4 -+ 1.039721 4 1 3 4 24 TCGA-DX-A1KU-01A-32R-A24X-07 RXRG~RP11-81H14.2 fusion "RXRG," "RP11-81H14.2," chr1~chr12 165414082 68727444 14 -- 1.965237 14 11 3 14 60 TCGA-DX-A1KU-01A-32R-A24X-07 SERGEF~HBE1 fusion "SERGEF," "HBE1," chr11~chr11 18010144 5291386 3 -- 0.636514 2 1 1 2 6 TCGA-DX-A1KU-01A-32R-A24X-07 SLC16A7~Nchr12~67991390 intergenic "SLC16A7," "-," chr12~chr12 60098799 67991390 11 ++ 1.84622 10 9 1 10 76 TCGA-DX-A1KU-01A-32R-A24X-07 SLC16A7~RP11-542B15.1 fusion "SLC16A7," "RP11-542B15.1," chr12~chr12 60098799 67939162 6 ++ 1.011404 6 1 5 6 32 TCGA-DX-A1KU-01A-32R-A24X-07 SLC16A7~RP11-542B15.1 fusion "SLC16A7," "RP11-542B15.1," chr12~chr12 60098799 67942903 6 ++ 1.242453 5 3 2 5 134 TCGA-DX-A1KU-01A-32R-A24X-07 SLC38A1~Nchr2~126927827 intergenic "SLC38A1," "-," chr12~chr2 46662309 126927827 4 -- 1.386294 4 0 4 4 22 TCGA-DX-A1KU-01A-32R-A24X-07 SLC38A1~Nchr2~127148304 intergenic "SLC38A1," "-," chr12~chr2 46636983 127148304 4 -- 0.562335 4 4 0 4 32 TCGA-DX-A1KU-01A-32R-A24X-07 SLC38A1~Nchr2~127148304 intergenic "SLC38A1," "-," chr12~chr2 46662309 127148304 2 -- 0.693147 2 2 0 2 10 TCGA-DX-A1KU-01A-32R-A24X-07 SLC38A1~Nchr2~127148308 intergenic "SLC38A1," "-," chr12~chr2 46636983 127148308 18 -- 2.322188 16 10 6 16 30 TCGA-DX-A1KU-01A-32R-A24X-07 SLC38A1~Nchr2~127148308 intergenic "SLC38A1," "-," chr12~chr2 46662648 127148308 3 -- 1.098612 2 0 2 2 10 TCGA-DX-A1KU-01A-32R-A24X-07 SLC38A1~Nchr2~127148308 intergenic "SLC38A1," "-," chr12~chr2 46662309 127148308 8 -- 1.559581 8 5 3 8 10 TCGA-DX-A1KU-01A-32R-A24X-07 SLC38A1~Nchr2~127180384 intergenic "SLC38A1," "-," chr12~chr2 46636983 127180384 51 -- 2.590776 45 24 21 45 220 TCGA-DX-A1KU-01A-32R-A24X-07 SLC38A1~Nchr2~127184856 intergenic "SLC38A1," "-," chr12~chr2 46636983 127184856 2 -- 0.693147 2 1 1 2 196 TCGA-DX-A1KU-01A-32R-A24X-07 SMARCC2~Nchr1~166527698 intergenic "SMARCC2," "-," chr12~chr1 56563560 166527698 7 -- 0.9557 7 3 4 7 10 TCGA-DX-A1KU-01A-32R-A24X-07 SMARCC2~Nchr1~166547069 intergenic "SMARCC2," "-," chr12~chr1 56563560 166547069 6 -- 1.329661 5 2 3 5 14 TCGA-DX-A1KU-01A-32R-A24X-07 SMARCC2~Nchr1~166660952 intergenic "SMARCC2," "-," chr12~chr1 56563560 166660952 14 -- 2.242973 14 9 5 14 68 TCGA-DX-A1KU-01A-32R-A24X-07 STX6~Nchr1~179789584 intergenic "STX6," "-," chr1~chr1 180991775 179789584 44 -- 2.075304 43 37 6 43 104 TCGA-DX-A1KU-01A-32R-A24X-07 STX6~Nchr1~179805538 intergenic "STX6," "-," chr1~chr1 180991775 179805538 24 -- 2.011207 26 24 0 26 96 TCGA-DX-A1KU-01A-32R-A24X-07 SULF2~Nchr20~47947917 intergenic "SULF2," "-," chr20~chr20 46291814 47947917 8 -+ 0.974315 7 4 3 7 30 TCGA-DX-A1KU-01A-32R-A24X-07 TCF4~Nchr18~10421494 intergenic "TCF4," "-," chr18~chr18 52921728 10421494 14 -+ 1.67499 16 12 1 16 22 TCGA-DX-A1KU-01A-32R-A24X-07 TPX2~Nchr1~97443410 intergenic "TPX2," "-," chr20~chr1 30347982 97443410 16 ++ 1.749779 14 7 7 14 18 TCGA-DX-A1KU-01A-32R-A24X-07 TRHDE~Nchr1~161842237 intergenic "TPH2,TRHDE,TPH2," "-," chr12~chr1 72499532 161842237 8 +- 1.732868 6 4 2 6 2 TCGA-DX-A1KU-01A-32R-A24X-07 UCHL5~C1orf112 fusion "UCHL5," "C1orf112," chr1~chr1 192990227 169818641 13 -+ 1.778233 12 5 7 12 66 TCGA-DX-A1KU-01A-32R-A24X-07 UEVLD~PRMT3 fusion "UEVLD," "PRMT3," chr11~chr11 18610160 20473676 66 -+ 2.672163 63 0 63 63 160 TCGA-DX-A1KU-01A-32R-A24X-07 USP15~Nchr12~74239811 intergenic "USP15," "-," chr12~chr12 62699839 74239811 21 ++ 1.908871 19 13 6 19 1298 TCGA-DX-A1KU-01A-32R-A24X-07 USP15~Nchr12~74239811 intergenic "USP15," "-," chr12~chr12 62696701 74239811 317 ++ 2.679506 307 206 101 307 1420 TCGA-DX-A1KU-01A-32R-A24X-07 USP15~Nchr1~161842237 intergenic "USP15," "-," chr12~chr1 62696701 161842237 3 +- 0.636514 3 2 1 3 16 TCGA-DX-A1KU-01A-32R-A24X-07 YEATS4~NME7 fusion "YEATS4," "NME7," chr12~chr1 69756687 169102055 35 +- 2.701402 35 19 16 35 250 TCGA-DX-A1KU-01A-32R-A24X-07 YEATS4~NME7 fusion "YEATS4," "NME7," chr12~chr1 69759479 169102055 10 +- 1.834372 10 4 6 10 452 TCGA-DX-A1KU-01A-32R-A24X-07 YEATS4~NME7 fusion "YEATS4," "NME7," chr12~chr1 69759664 169102055 151 +- 3.112696 143 61 82 143 936 TCGA-DX-A1KU-01A-32R-A24X-07 YEATS4~NME7 fusion "YEATS4," "NME7," chr12~chr1 69759664 169128452 32 +- 2.400861 31 11 20 31 124 TCGA-DX-A1KU-01A-32R-A24X-07 ZBTB37~Nchr1~187755360 intergenic "ZBTB37," "-," chr1~chr1 173862749 187755360 14 +- 2.242973 14 7 7 14 20 TCGA-DX-A1KU-01A-32R-A24X-07 ZNF331~Nchr19~46546100 intergenic "ZNF331," "-," chr19~chr19 54069275 46546100 17 ++ 2.165976 16 9 7 16 24 TCGA-DX-A1KU-01A-32R-A24X-07 ZNF717~Nchr1~172211014 intergenic "ZNF717," "-," chr3~chr1 75832457 172211014 2 -- 0.693147 2 1 1 2 58 TCGA-DX-A1KU-01A-32R-A24X-07 ZNF717~Nchr1~172216386 intergenic "ZNF717," "-," chr3~chr1 75832457 172216386 29 -- 2.691724 27 19 8 27 92 TCGA-DX-A1KU-01A-32R-A24X-07 ZNF717~RP5-1116C7.1 fusion "ZNF717," "RP5-1116C7.1," chr3~chr1 75832457 172113577 4 -- 1.039721 2 2 0 2 36 TCGA-K1-A3PN-01A-11R-A22K-07 C15orf57~CBX3 fusion "C15orf57," "CBX3," chr15~chr7 40854971 26241389 3 -+ 1.098612 3 1 2 3 2 TCGA-K1-A3PN-01A-11R-A22K-07 DST~Nchr6~53244924 intergenic "DST," "-," chr6~chr6 56707853 53244924 6 -- 1.011404 6 5 1 6 36 TCGA-K1-A3PN-01A-11R-A22K-07 DST~RP11-96J19.3 fusion "DST," "RP11-96J19.3," chr6~chr6 56707853 53247385 2 -- 0.693147 2 0 2 2 10 TCGA-K1-A3PN-01A-11R-A22K-07 GIGYF2~EEF1B2 fusion "GIGYF2," "EEF1B2," chr2~chr2 233594854 207024743 4 ++ 1.039721 2 2 0 2 18 TCGA-K1-A3PN-01A-11R-A22K-07 GRLF1~SAE1 fusion "GRLF1," "SAE1," chr19~chr19 47440665 47646751 2 ++ 0.693147 2 2 0 2 14 TCGA-K1-A3PN-01A-11R-A22K-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31237987 31323000 2 -- 0.693147 1 0 1 1 6 TCGA-K1-A3PN-01A-11R-A22K-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 48 -- 2.184498 48 48 0 48 60 TCGA-K1-A3PN-01A-11R-A22K-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 38 -- 1.634509 37 0 37 37 12 TCGA-K1-A3PN-01A-11R-A22K-07 Nchr15~21916043~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21916043 20876597 3 -- 0.636514 3 1 2 3 12 TCGA-K1-A3PN-01A-11R-A22K-07 Nchr17~16343551~Nchr17~16344712 intergenic "-," "-," chr17~chr17 16343551 16344712 4 -+ 1.386294 1 1 0 1 194 TCGA-K1-A3PN-01A-11R-A22K-07 Nchr18~20500725~Nchr18~20284883 intergenic "-," "-," chr18~chr18 20500725 20284883 2 -- 0.693147 2 0 2 2 8 TCGA-K1-A3PN-01A-11R-A22K-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 13 -+ 2.138397 13 4 9 13 58 TCGA-K1-A3PN-01A-11R-A22K-07 Nchr2~19844520~OSR1 intergenic "-," "OSR1," chr2~chr2 19844520 19553598 2 -- 0.693147 2 2 0 2 30 TCGA-K1-A3PN-01A-11R-A22K-07 Nchr4~33748483~Nchr4~33507522 intergenic "-," "-," chr4~chr4 33748483 33507522 2 -- 0.693147 2 2 0 2 8 TCGA-K1-A3PN-01A-11R-A22K-07 Nchr7~110514869~IMMP2L intergenic "-," "IMMP2L," chr7~chr7 110514869 110303777 4 -- 0.693147 4 4 0 4 4 TCGA-K1-A3PN-01A-11R-A22K-07 NchrX~117355164~KLHL13 intergenic "-," "KLHL13," chrX~chrX 117355164 117079538 3 -- 0.636514 3 0 3 3 22 TCGA-K1-A3PN-01A-11R-A22K-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 11 ++ 1.798652 11 7 4 11 58 TCGA-K1-A3PN-01A-11R-A22K-07 RP11-96H19.1~Nchr12~47270358 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47270358 5 ++ 0.500402 5 4 1 5 4 TCGA-K1-A3PN-01A-11R-A22K-07 TPM2~ACTG1 fusion "TPM2," "ACTG1," chr9~chr17 35685061 79478652 5 -- 1.332179 5 1 4 5 8 TCGA-K1-A3PN-01A-11R-A22K-07 TPM2~Nchr5~163136512 intergenic "TPM2," "-," chr9~chr5 35685277 163136512 2 -- 0.693147 1 0 1 1 46 TCGA-K1-A3PO-11A-12R-A21T-07 ACTG2~ACTA2 fusion "ACTG2," "RP11-399O19.5,ACTA2," chr2~chr10 74140773 90699455 7 +- 0.682908 7 4 3 7 8 TCGA-K1-A3PO-11A-12R-A21T-07 EEF2~SMARCA4 fusion "EEF2," "SMARCA4," chr19~chr19 3982805 11151983 7 -+ 1.475076 7 6 1 7 34 TCGA-K1-A3PO-11A-12R-A21T-07 MYL9~DES fusion "MYL9," "DES," chr20~chr2 35178037 220290679 2 ++ 0.693147 2 1 1 2 62 TCGA-K1-A3PO-11A-12R-A21T-07 NOP56~Nchr12~79952582 intergenic "NOP56,NOP56," "-," chr20~chr12 2637857 79952582 5 ++ 1.05492 4 0 4 4 2 TCGA-K1-A3PO-11A-12R-A21T-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 49 -+ 2.760906 45 30 14 45 918 TCGA-K1-A3PO-11A-12R-A21T-07 Nchr1~35816902~RPL5 intergenic "-," "RPL5," chr1~chr1 35816902 93303106 4 -- 0.693147 4 0 4 4 14 TCGA-K1-A3PO-11A-12R-A21T-07 Nchr1~99473933~RPL5 intergenic "-," "RPL5," chr1~chr1 99473933 93303175 5 ++ 0.673012 2 2 0 2 8 TCGA-K1-A3PO-11A-12R-A21T-07 Nchr5~163136438~TPM2 intergenic "-," "TPM2," chr5~chr9 163136438 35685538 2 +- 0.693147 2 0 2 2 84 TCGA-K1-A3PO-11A-12R-A21T-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 5 -- 1.332179 3 3 0 3 4 TCGA-K1-A3PO-11A-12R-A21T-07 Nchr6~29896012~HLA-B intergenic "-," "HLA-B," chr6~chr6 29896012 31323168 4 -- 1.386294 2 1 1 2 12 TCGA-K1-A3PO-11A-12R-A21T-07 PCSK7~DES fusion "TAGLN,PCSK7,TAGLN," "DES," chr11~chr2 117075282 220285297 3 ++ 1.098612 1 0 1 1 16 TCGA-K1-A3PO-11A-12R-A21T-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 7 ++ 1.549826 7 5 2 7 24 TCGA-K1-A3PO-01A-11R-A21T-07 CALM2~TTC7A fusion "CALM2," "TTC7A," chr2~chr2 47397873 47233061 29 -+ 1.96835 18 3 15 18 248 TCGA-K1-A3PO-01A-11R-A21T-07 DOT1L~Nchr7~39874157 intergenic "DOT1L," "-," chr19~chr7 2164264 39874157 2 ++ 0.693147 1 0 1 1 68 TCGA-K1-A3PO-01A-11R-A21T-07 DOT1L~SSBP3 fusion "DOT1L," "SSBP3," chr19~chr1 2164264 54694499 50 +- 2.625625 34 33 1 34 68 TCGA-K1-A3PO-01A-11R-A21T-07 EEF2~SMARCA4 fusion "EEF2," "SMARCA4," chr19~chr19 3982805 11151983 2007 -+ 3.105205 1960 963 985 1960 7518 TCGA-K1-A3PO-01A-11R-A21T-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 634 -- 2.394889 634 634 0 634 256 TCGA-K1-A3PO-01A-11R-A21T-07 KIAA0090~Nchr1~25566495 intergenic "KIAA0090," "-," chr1~chr1 19561624 25566495 30 -+ 2.609516 30 18 12 30 164 TCGA-K1-A3PO-01A-11R-A21T-07 KIAA0090~Nchr1~25566497 intergenic "KIAA0090," "-," chr1~chr1 19561624 25566497 8 -+ 1.386294 8 3 5 8 140 TCGA-K1-A3PO-01A-11R-A21T-07 Nchr16~55801363~CES1 intergenic "-," "CES1," chr16~chr16 55801363 55862727 3 -- 0.636514 3 2 1 3 24 TCGA-K1-A3PO-01A-11R-A21T-07 Nchr17~62400585~Nchr17~62400475 intergenic "-," "-," chr17~chr17 62400585 62400475 2 ++ 0.693147 2 2 0 2 2 TCGA-K1-A3PO-01A-11R-A21T-07 Nchr17~62401167~Nchr17~62407078 intergenic "-," "-," chr17~chr17 62401167 62407078 2 +- 0.693147 1 1 0 1 22 TCGA-K1-A3PO-01A-11R-A21T-07 Nchr1~25559170~Nchr2~47098959 intergenic "-," "-," chr1~chr2 25559170 47098959 3 ++ 0.636514 3 0 3 3 2 TCGA-K1-A3PO-01A-11R-A21T-07 Nchr1~25559170~Nchr2~47101982 intergenic "-," "-," chr1~chr2 25559170 47101982 12 ++ 1.87116 13 0 11 13 2 TCGA-K1-A3PO-01A-11R-A21T-07 Nchr20~33104213~DYNLRB1 intergenic "-," "DYNLRB1," chr20~chr20 33104213 33114109 3 -+ 1.098612 3 3 0 3 18 TCGA-K1-A3PO-01A-11R-A21T-07 Nchr2~47445730~THRB intergenic "-," "THRB," chr2~chr3 47445730 24279549 3 ++ 1.098612 3 2 1 3 6 TCGA-K1-A3PO-01A-11R-A21T-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 12 ++ 1.42413 12 12 0 12 6 TCGA-K1-A3PO-01A-11R-A21T-07 Nchr6~29855732~HLA-C intergenic "-," "HLA-C," chr6~chr6 29855732 31239486 4 -- 1.039721 2 0 2 2 24 TCGA-K1-A3PO-01A-11R-A21T-07 Nchr8~28096433~PDLIM7 intergenic "-," "PDLIM7," chr8~chr5 28096433 176916833 8 +- 1.732868 4 4 0 4 2 TCGA-K1-A3PO-01A-11R-A21T-07 PRKD3~TMEM51 fusion "PRKD3," "TMEM51," chr2~chr1 37520276 15536986 10 -+ 1.470808 6 0 6 6 14 TCGA-K1-A3PO-01A-11R-A21T-07 RBM6~TTC7A fusion "RBM6," "TTC7A," chr3~chr2 50106197 47287908 10 ++ 1.220607 6 4 2 6 18 TCGA-K1-A3PO-01A-11R-A21T-07 SCMH1~CASP9 fusion "SCMH1," "CASP9," chr1~chr1 41707731 15844890 25 -- 2.064051 23 23 0 23 24 TCGA-K1-A3PO-01A-11R-A21T-07 SPSB1~TAF12 fusion "SPSB1," "TAF12," chr1~chr1 9353130 28948677 34 +- 2.404694 33 0 33 33 20 TCGA-K1-A3PO-01A-11R-A21T-07 SPSB1~TAF12 fusion "SPSB1," "TAF12," chr1~chr1 9376331 28948677 4 +- 1.039721 4 3 1 4 14 TCGA-K1-A3PO-01A-11R-A21T-07 TFRC~Nchr1~41968278 intergenic "TFRC," "-," chr3~chr1 195781951 41968278 6 -+ 1.329661 6 3 3 6 224 TCGA-K1-A3PO-01A-11R-A21T-07 TFRC~Nchr1~42035605 intergenic "TFRC," "-," chr3~chr1 195781951 42035605 3 -+ 1.098612 3 1 2 3 4 TCGA-K1-A3PO-01A-11R-A21T-07 TTC7A~AC016722.2 fusion "TTC7A," "AC016722.2," chr2~chr2 47288110 47083062 2 ++ 0.693147 1 1 0 1 20 TCGA-K1-A3PO-01A-11R-A21T-07 TTC7A~Nchr2~47445298 intergenic "TTC7A," "-," chr2~chr2 47233198 47445298 74 ++ 2.933027 51 10 39 51 170 TCGA-IW-A3M6-01A-11R-A21T-07 ACTG2~ALK fusion "ACTG2," "ALK," chr2~chr2 74128564 29449891 9 +- 2.197225 9 7 2 9 1802 TCGA-IW-A3M6-01A-11R-A21T-07 ACTG2~ALK fusion "ACTG2," "ALK," chr2~chr2 74128607 29449940 17 +- 2.200828 17 2 15 17 2596 TCGA-IW-A3M6-01A-11R-A21T-07 ACTG2~ALK fusion "ACTG2," "ALK," chr2~chr2 74128564 29449940 714 +- 3.095431 665 367 298 665 2718 TCGA-IW-A3M6-01A-11R-A21T-07 COPB2~Nchr3~139408190 intergenic "COPB2," "-," chr3~chr3 139085410 139408190 7 -- 1.94591 7 4 3 7 20 TCGA-IW-A3M6-01A-11R-A21T-07 COPB2~Nchr3~139408208 intergenic "COPB2," "-," chr3~chr3 139085410 139408208 2 -- 0.693147 2 1 1 2 22 TCGA-IW-A3M6-01A-11R-A21T-07 COPB2~Nchr3~139416008 intergenic "COPB2," "-," chr3~chr3 139085410 139416008 8 -- 1.494175 6 3 3 6 10 TCGA-IW-A3M6-01A-11R-A21T-07 COPB2~RP11-442N1.1 fusion "COPB2," "RP11-442N1.1," chr3~chr3 139085410 139407640 4 -- 1.039721 4 3 1 4 4 TCGA-IW-A3M6-01A-11R-A21T-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31237270 31322303 3 -- 1.098612 1 0 1 1 22 TCGA-IW-A3M6-01A-11R-A21T-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 237 -- 2.725556 237 237 0 237 222 TCGA-IW-A3M6-01A-11R-A21T-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32487941 32548633 100 -- 2.302744 59 0 59 59 14 TCGA-IW-A3M6-01A-11R-A21T-07 NUP205~SERPINA12 fusion "NUP205," "SERPINA12," chr7~chr14 135282166 94964767 27 +- 2.415776 28 16 11 28 110 TCGA-IW-A3M6-01A-11R-A21T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 84 -+ 2.546511 42 0 42 42 50 TCGA-IW-A3M6-01A-11R-A21T-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 28 -+ 2.580523 22 14 8 22 260 TCGA-IW-A3M6-01A-11R-A21T-07 Nchr2~29413955~Nchr2~29414256 intergenic "-," "-," chr2~chr2 29413955 29414256 3 -- 1.098612 3 3 0 3 12 TCGA-IW-A3M6-01A-11R-A21T-07 Nchr2~91843394~Nchr2~98671078 intergenic "-," "-," chr2~chr2 91843394 98671078 2 -- 0.693147 2 2 0 2 28 TCGA-IW-A3M6-01A-11R-A21T-07 Nchr3~27065268~LRRC3B intergenic "-," "LRRC3B," chr3~chr3 27065268 26715443 5 -- 1.332179 4 4 0 4 6 TCGA-IW-A3M6-01A-11R-A21T-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 3 -- 0.636514 3 3 0 3 8 TCGA-IW-A3M6-01A-11R-A21T-07 NchrX~56757835~NchrX~56844004 intergenic "-," "-," chrX~chrX 56757835 56844004 22 -- 0.548118 21 5 16 21 952 TCGA-IW-A3M6-01A-11R-A21T-07 PPIG~Nchr2~177972178 intergenic "PPIG," "-," chr2~chr2 170471234 177972178 51 ++ 2.601955 40 16 24 40 194 TCGA-IW-A3M6-01A-11R-A21T-07 PPIG~Nchr2~177998402 intergenic "PPIG," "-," chr2~chr2 170471234 177998402 14 ++ 2.242973 9 9 0 9 112 TCGA-IW-A3M6-01A-11R-A21T-07 RP11-14N7.2~Nchr2~98671078 intergenic "RP11-14N7.2," "-," chr1~chr2 148932920 98671078 10 +- 1.748067 8 0 8 8 20 TCGA-IW-A3M6-01A-11R-A21T-07 RUNX1~Nchr18~25912279 intergenic "RUNX1," "-," chr21~chr18 36231771 25912279 6 -- 1.242453 5 0 5 5 14 TCGA-IW-A3M6-01A-11R-A21T-07 SERF2~Nchr12~58284096 intergenic "SERF2," "-," chr15~chr12 44085281 58284096 24 ++ 2.477263 24 12 12 24 68 TCGA-IW-A3M6-01A-11R-A21T-07 TMEM106A~Nchr17~41400158 intergenic "TMEM106A," "-," chr17~chr17 41369331 41400158 4 +- 1.039721 4 4 0 4 10 TCGA-IW-A3M6-01A-11R-A21T-07 TPM2~ACTG1 fusion "TPM2," "ACTG1," chr9~chr17 35685061 79478652 3 -- 1.098612 3 1 2 3 16 TCGA-IW-A3M6-01A-11R-A21T-07 TPM4~Nchr3~27674690 intergenic "TPM4," "-," chr19~chr3 16186932 27674690 2 -+ 0.693147 1 1 0 1 150 TCGA-IW-A3M5-01A-22R-A21T-07 ANKRD11~NAALADL2 fusion "ANKRD11," "NAALADL2," chr16~chr3 89357033 174951721 3 -+ 0.636514 3 2 1 3 4 TCGA-IW-A3M5-01A-22R-A21T-07 ASH1L~RIT1 fusion "ASH1L," "RIT1," chr1~chr1 155307380 155874293 4 -- 0.562335 4 1 3 4 10 TCGA-IW-A3M5-01A-22R-A21T-07 AUTS2~Nchr2~119130156 intergenic "AUTS2," "-," chr7~chr2 69364484 119130156 15 +- 1.5227 5 3 2 5 48 TCGA-IW-A3M5-01A-22R-A21T-07 COL11A1~RP11-202K23.1 fusion "COL11A1," "RP11-202K23.1," chr1~chr1 103348755 102692155 3 -- 1.098612 3 1 2 3 42 TCGA-IW-A3M5-01A-22R-A21T-07 LANCL2~Nchr7~56259623 intergenic "LANCL2," "-," chr7~chr7 55479782 56259623 4 ++ 1.039721 4 1 3 4 6 TCGA-IW-A3M5-01A-22R-A21T-07 LATS1~Nchr6~150815787 intergenic "LATS1," "-," chr6~chr6 149997396 150815787 4 -- 1.386294 4 1 3 4 54 TCGA-IW-A3M5-01A-22R-A21T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 103 -+ 2.379538 48 0 48 48 24 TCGA-IW-A3M5-01A-22R-A21T-07 Nchr12~23124028~Nchr12~23559990 intergenic "-," "-," chr12~chr12 23124028 23559990 21 +- 1.806437 13 4 9 13 10 TCGA-IW-A3M5-01A-22R-A21T-07 Nchr14~28125649~Nchr14~27791347 intergenic "-," "-," chr14~chr14 28125649 27791347 5 -- 0.500402 5 5 0 5 6 TCGA-IW-A3M5-01A-22R-A21T-07 Nchr14~45066112~Nchr14~44862941 intergenic "-," "-," chr14~chr14 45066112 44862941 21 -- 2.040899 11 9 2 11 22 TCGA-IW-A3M5-01A-22R-A21T-07 Nchr14~45267133~Nchr14~44862941 intergenic "-," "-," chr14~chr14 45267133 44862941 6 -- 1.329661 6 1 5 6 34 TCGA-IW-A3M5-01A-22R-A21T-07 Nchr14~45267133~Nchr14~45066216 intergenic "-," "-," chr14~chr14 45267133 45066216 13 -- 1.517152 2 0 2 2 18 TCGA-IW-A3M5-01A-22R-A21T-07 Nchr16~89118869~Nchr3~192830250 intergenic "-," "-," chr16~chr3 89118869 192830250 3 -- 0.636514 3 2 1 3 16 TCGA-IW-A3M5-01A-22R-A21T-07 Nchr18~53560673~AC006305.1 intergenic "-," "AC006305.1," chr18~chr18 53560673 53763306 11 ++ 1.748155 11 5 5 11 176 TCGA-IW-A3M5-01A-22R-A21T-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 7 ++ 1.549826 7 3 4 7 22 TCGA-IW-A3M5-01A-22R-A21T-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 46 -+ 2.798885 45 21 24 45 388 TCGA-IW-A3M5-01A-22R-A21T-07 Nchr1~147775634~RP11-495P10.6 intergenic "-," "RP11-495P10.6," chr1~chr1 147775634 147745213 8 +- 1.073543 8 1 7 8 18 TCGA-IW-A3M5-01A-22R-A21T-07 Nchr1~147775662~RP11-495P10.6 intergenic "-," "RP11-495P10.6," chr1~chr1 147775662 147744165 6 +- 0.450561 6 0 6 6 6 TCGA-IW-A3M5-01A-22R-A21T-07 Nchr1~171639696~Nchr1~171639868 intergenic "-," "-," chr1~chr1 171639696 171639868 6 -- 0.636514 6 4 2 6 8 TCGA-IW-A3M5-01A-22R-A21T-07 Nchr22~48082955~Nchr22~48409499 intergenic "-," "-," chr22~chr22 48082955 48409499 3 ++ 0.636514 3 1 2 3 4 TCGA-IW-A3M5-01A-22R-A21T-07 Nchr2~176459302~Nchr2~176697339 intergenic "-," "-," chr2~chr2 176459302 176697339 3 ++ 1.098612 2 1 1 2 14 TCGA-IW-A3M5-01A-22R-A21T-07 Nchr2~45223806~KRTCAP2 intergenic "-," "KRTCAP2," chr2~chr1 45223806 155141996 12 -- 1.86368 2 2 0 2 4 TCGA-IW-A3M5-01A-22R-A21T-07 Nchr5~93018536~NPM1 intergenic "-," "NPM1," chr5~chr5 93018536 170837597 3 -- 0.636514 3 3 0 3 14 TCGA-IW-A3M5-01A-22R-A21T-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 3 -- 0.636514 3 3 0 3 8 TCGA-IW-A3M5-01A-22R-A21T-07 Nchr6~82767656~RP11-379B8.1 intergenic "-," "RP11-379B8.1," chr6~chr6 82767656 82555626 10 -- 1.695743 5 4 1 5 10 TCGA-IW-A3M5-01A-22R-A21T-07 RP13-188A5.1~NchrX~56231406 intergenic "RP13-188A5.1," "-," chrX~chrX 55935233 56231406 2 ++ 0.693147 2 2 0 2 2 TCGA-IW-A3M5-01A-22R-A21T-07 RPL13~Nchr17~17286921 intergenic "RPL13," "-," chr16~chr17 89628780 17286921 2 -- 0.693147 1 0 1 1 114 TCGA-IW-A3M5-01A-22R-A21T-07 ZNF568~Nchr7~52867152 intergenic "ZNF568," "-," chr19~chr7 37428144 52867152 4 ++ 1.039721 4 0 4 4 2 TCGA-K1-A3PN-02A-11R-A22K-07 CALD1~EXOC4 fusion "CALD1," "EXOC4," chr7~chr7 134650137 133160082 4 ++ 1.039721 4 1 3 4 14 TCGA-K1-A3PN-02A-11R-A22K-07 CPSF6~C9orf3 fusion "CPSF6," "C9orf3," chr12~chr9 69656342 97848964 4 ++ 0.693147 4 2 2 4 2 TCGA-K1-A3PN-02A-11R-A22K-07 EDF1~Nchr9~139760751 intergenic "EDF1," "-," chr9~chr9 139758307 139760751 3 +- 0.636514 3 3 0 3 40 TCGA-K1-A3PN-02A-11R-A22K-07 ENO1~Nchr1~236648076 intergenic "ENO1," "-," chr1~chr1 8921250 236648076 2 -- 0.693147 2 2 0 2 2 TCGA-K1-A3PN-02A-11R-A22K-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 206 -- 2.616078 206 206 0 206 52 TCGA-K1-A3PN-02A-11R-A22K-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 63 -- 2.124548 66 0 63 66 28 TCGA-K1-A3PN-02A-11R-A22K-07 Nchr15~38133618~Nchr15~37712386 intergenic "-," "-," chr15~chr15 38133618 37712386 7 -- 1.747868 6 2 4 6 30 TCGA-K1-A3PN-02A-11R-A22K-07 Nchr19~29178629~BRD4 intergenic "-," "BRD4," chr19~chr19 29178629 15383944 3 -- 1.098612 2 2 0 2 4 TCGA-K1-A3PN-02A-11R-A22K-07 Nchr2~177065929~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065929 177065788 3 ++ 0.636514 3 0 3 3 98 TCGA-K1-A3PN-02A-11R-A22K-07 Nchr9~29212920~Nchr9~28947912 intergenic "-," "-," chr9~chr9 29212920 28947912 7 -- 0.796312 3 0 3 3 4 TCGA-K1-A3PN-02A-11R-A22K-07 Nchr9~81579497~Nchr9~81816142 intergenic "-," "-," chr9~chr9 81579497 81816142 3 ++ 0.636514 3 2 1 3 4 TCGA-K1-A3PN-02A-11R-A22K-07 PKM2~MYL9 fusion "PKM2," "MYL9," chr15~chr20 72499600 35178006 3 -+ 0.636514 3 3 0 3 2 TCGA-K1-A3PN-02A-11R-A22K-07 RP11-386G11.10~TUBA1C fusion "RP11-386G11.10,TUBA1B,TUBA1B,RP11-386G11.10," "TUBA1C,RP11-161H23.5," chr12~chr12 49521993 49666750 2 -- 0.693147 1 1 0 1 118 TCGA-K1-A3PN-02A-11R-A22K-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 13 ++ 1.95126 10 1 9 10 32 TCGA-K1-A3PN-02A-11R-A22K-07 TPM2~ACTG1 fusion "TPM2," "ACTG1," chr9~chr17 35685061 79478652 7 -- 1.277034 7 5 2 7 12 TCGA-IS-A3K8-01A-11R-A21T-07 AC016995.3~RPLP0 fusion "AC016995.3," "RPLP0," chr2~chr12 38709197 120638900 2 -- 0.693147 2 2 0 2 104 TCGA-IS-A3K8-01A-11R-A21T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 82 -+ 2.580498 42 0 42 42 44 TCGA-IS-A3K8-01A-11R-A21T-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 19 -+ 2.260234 16 8 8 16 218 TCGA-IS-A3K8-01A-11R-A21T-07 Nchr1~224051568~ACTA2 intergenic "-," "RP11-399O19.5,ACTA2," chr1~chr10 224051568 90695115 4 -- 1.039721 3 0 3 3 6 TCGA-IS-A3K8-01A-11R-A21T-07 Nchr2~177065929~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065929 177065788 3 ++ 0.636514 3 0 3 3 108 TCGA-IS-A3K8-01A-11R-A21T-07 Nchr8~28096433~PDLIM7 intergenic "-," "PDLIM7," chr8~chr5 28096433 176916833 5 +- 1.609438 1 1 0 1 2 TCGA-IS-A3K8-01A-11R-A21T-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 7 ++ 1.351784 7 3 4 7 28 TCGA-IW-A3M4-01A-11R-A21T-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 2 +- 0.693147 2 1 1 2 26 TCGA-IW-A3M4-01A-11R-A21T-07 FAM18B2~USP20 fusion "FAM18B2," "USP20," chr17~chr9 15449099 132620329 5 -+ 0.950271 5 4 1 5 2 TCGA-IW-A3M4-01A-11R-A21T-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 39 -- 2.297796 39 38 1 39 14 TCGA-IW-A3M4-01A-11R-A21T-07 Nchr11~27603245~RPS25 intergenic "-," "RPS25," chr11~chr11 27603245 118889038 25 -- 2.213406 23 10 13 23 168 TCGA-IW-A3M4-01A-11R-A21T-07 Nchr11~27603266~RPS25 intergenic "-," "RPS25," chr11~chr11 27603266 118888759 3 -- 0.636514 2 0 2 2 146 TCGA-IW-A3M4-01A-11R-A21T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 75 -+ 2.469382 42 0 42 42 68 TCGA-IW-A3M4-01A-11R-A21T-07 Nchr12~24366277~SOX5 intergenic "-," "SOX5," chr12~chr12 24366277 24048958 4 -- 1.386294 2 2 0 2 4 TCGA-IW-A3M4-01A-11R-A21T-07 Nchr15~57178514~Nchr18~29591999 intergenic "-," "-," chr15~chr18 57178514 29591999 3 -+ 1.098612 3 3 0 3 12 TCGA-IW-A3M4-01A-11R-A21T-07 Nchr17~16343551~Nchr17~16344712 intergenic "-," "-," chr17~chr17 16343551 16344712 7 -+ 1.277034 6 6 0 6 62 TCGA-IW-A3M4-01A-11R-A21T-07 Nchr17~16344776~Nchr17~16344871 intergenic "-," "-," chr17~chr17 16344776 16344871 2 -- 0.693147 1 1 0 1 4 TCGA-IW-A3M4-01A-11R-A21T-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 6 ++ 1.011404 6 1 5 6 14 TCGA-IW-A3M4-01A-11R-A21T-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 11 -+ 2.019815 10 5 5 10 110 TCGA-IW-A3M4-01A-11R-A21T-07 Nchr1~569174~Nchr1~569324 intergenic "-," "-," chr1~chr1 569174 569324 4 -- 1.039721 3 1 2 3 18 TCGA-IW-A3M4-01A-11R-A21T-07 Nchr20~29653686~Nchr9~68422207 intergenic "-," "-," chr20~chr9 29653686 68422207 8 +- 2.079442 5 3 2 5 6 TCGA-IW-A3M4-01A-11R-A21T-07 Nchr5~55800666~Nchr5~55800759 intergenic "-," "-," chr5~chr5 55800666 55800759 4 -- 1.039721 4 0 4 4 16 TCGA-IW-A3M4-01A-11R-A21T-07 Nchr6~151546858~RPS12 intergenic "-," "RPS12," chr6~chr6 151546858 133138099 11 ++ 2.019815 5 4 1 5 110 TCGA-IW-A3M4-01A-11R-A21T-07 Nchr6~151546858~RPS12 intergenic "-," "RPS12," chr6~chr6 151546858 133138121 3 ++ 0.636514 1 0 1 1 68 TCGA-IW-A3M4-01A-11R-A21T-07 Nchr8~128691459~Nchr8~128433208 intergenic "-," "-," chr8~chr8 128691459 128433208 9 -- 1.735126 2 2 0 2 6 TCGA-IW-A3M4-01A-11R-A21T-07 Nchr9~19200845~RPS6 intergenic "-," "RPS6," chr9~chr9 19200845 19379586 3 -- 0.636514 3 0 3 3 64 TCGA-IW-A3M4-01A-11R-A21T-07 Nchr9~28947816~LINGO2 intergenic "-," "LINGO2," chr9~chr9 28947816 28670278 9 -- 1.676988 1 0 1 1 2 TCGA-IW-A3M4-01A-11R-A21T-07 Nchr9~29212920~Nchr9~28947912 intergenic "-," "-," chr9~chr9 29212920 28947912 9 -- 2.043192 8 1 7 8 8 TCGA-IW-A3M4-01A-11R-A21T-07 RIMS2~Nchr4~56239932 intergenic "RIMS2," "-," chr8~chr4 105257285 56239932 2 ++ 0.693147 1 1 0 1 48 TCGA-IW-A3M4-01A-11R-A21T-07 RIMS2~Nchr4~56239967 intergenic "RIMS2," "-," chr8~chr4 105257285 56239967 5 ++ 1.609438 4 1 3 4 44 TCGA-IW-A3M4-01A-11R-A21T-07 RP11-161D15.2~Nchr4~175111031 intergenic "RP11-161D15.2," "-," chr4~chr4 174799431 175111031 3 ++ 0.636514 3 3 0 3 2 TCGA-IW-A3M4-01A-11R-A21T-07 RPS6~Nchr9~19200482 intergenic "RPS6," "-," chr9~chr9 19376625 19200482 2 ++ 0.693147 1 1 0 1 26 TCGA-IW-A3M4-01A-11R-A21T-07 TPM2~ACTG1 fusion "TPM2," "ACTG1," chr9~chr17 35685061 79478652 15 -- 2.153532 13 10 3 13 26 TCGA-IW-A3M4-01A-11R-A21T-07 USP20~FAM18B2 fusion "USP20," "CDRT4,FAM18B2,CDRT4,FAM18B2,CDRT4," chr9~chr17 132620391 15341517 5 +- 1.05492 5 4 1 5 16 TCGA-IW-A3M4-01A-11R-A21T-07 USP20~FAM18B2 fusion "USP20," "FAM18B2,CDRT4,FAM18B2,CDRT4," chr9~chr17 132620391 15343599 3 +- 0.636514 3 1 2 3 20 TCGA-IS-A3KA-01A-11R-A21T-07 CHCHD10~SMARCB1 fusion "CHCHD10," "SMARCB1," chr22~chr22 24108315 24158957 6 -+ 0.867563 6 4 2 6 20 TCGA-IS-A3KA-01A-11R-A21T-07 CHIC2~Nchr6~23707159 intergenic "CHIC2," "-," chr4~chr6 54915122 23707159 2 -+ 0.693147 2 1 1 2 16 TCGA-IS-A3KA-01A-11R-A21T-07 CLIC5~Nchr6~43872035 intergenic "CLIC5," "-," chr6~chr6 45881965 43872035 4 -+ 0.693147 4 4 0 4 6 TCGA-IS-A3KA-01A-11R-A21T-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 3 +- 0.636514 3 3 0 3 62 TCGA-IS-A3KA-01A-11R-A21T-07 FAM113B~Nchr4~176346582 intergenic "FAM113B," "-," chr12~chr4 47497978 176346582 4 ++ 0.693147 4 0 4 4 6 TCGA-IS-A3KA-01A-11R-A21T-07 FUBP1~Nchr1~69067923 intergenic "FUBP1," "-," chr1~chr1 78425869 69067923 4 -- 0.693147 4 2 2 4 4 TCGA-IS-A3KA-01A-11R-A21T-07 HEATR1~Nchr1~244120907 intergenic "HEATR1," "-," chr1~chr1 236767254 244120907 3 -+ 0.636514 1 0 1 1 18 TCGA-IS-A3KA-01A-11R-A21T-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 83 -- 2.190601 82 82 0 82 42 TCGA-IS-A3KA-01A-11R-A21T-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 81 -- 2.089977 79 1 76 79 58 TCGA-IS-A3KA-01A-11R-A21T-07 HLA-F~Nchr6~29896049 intergenic "HLA-F," "-," chr6~chr6 29692935 29896049 8 -- 1.320888 4 3 1 4 4 TCGA-IS-A3KA-01A-11R-A21T-07 JARID2~Nchr6~21755385 intergenic "JARID2," "-," chr6~chr6 15246815 21755385 7 +- 1.351784 7 4 3 7 10 TCGA-IS-A3KA-01A-11R-A21T-07 LCORL~Nchr2~218823340 intergenic "LCORL," "-," chr4~chr2 17910717 218823340 12 -+ 1.445186 8 5 3 8 16 TCGA-IS-A3KA-01A-11R-A21T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 301 -+ 2.480449 96 0 93 96 206 TCGA-IS-A3KA-01A-11R-A21T-07 Nchr2~177065909~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065909 177065788 4 ++ 0.562335 4 0 4 4 6 TCGA-IS-A3KA-01A-11R-A21T-07 Nchr2~218823042~LCORL intergenic "-," "LCORL," chr2~chr4 218823042 17916802 23 -+ 2.185889 23 10 13 23 92 TCGA-IS-A3KA-01A-11R-A21T-07 Nchr5~113026851~Nchr5~113333873 intergenic "-," "-," chr5~chr5 113026851 113333873 13 ++ 1.818483 9 0 9 9 14 TCGA-IS-A3KA-01A-11R-A21T-07 Nchr6~90348657~GRIK2 intergenic "-," "GRIK2," chr6~chr6 90348657 102176805 11 +- 1.84622 11 7 4 11 48 TCGA-IS-A3KA-01A-11R-A21T-07 RP11-440L14.1~C2orf82 fusion "RP11-440L14.1," "C2orf82," chr4~chr2 775560 233740650 76 -+ 2.7041 72 72 0 72 130 TCGA-IS-A3KA-01A-11R-A21T-07 RP11-440L14.1~C2orf82 fusion "RP11-440L14.1," "C2orf82," chr4~chr2 774319 233740650 6 -+ 1.011404 6 1 5 6 170 TCGA-IS-A3KA-01A-11R-A21T-07 ZNF451~Nchr10~16274798 intergenic "ZNF451," "-," chr6~chr10 56999668 16274798 4 ++ 1.039721 3 1 2 3 12 TCGA-IS-A3K7-01A-11R-A21T-07 AC009499.1~Nchr15~85277174 intergenic "AC009499.1," "-," chr2~chr15 34169620 85277174 5 ++ 0.673012 5 3 2 5 10 TCGA-IS-A3K7-01A-11R-A21T-07 AGAP1~TMSB10 fusion "AGAP1," "TMSB10," chr2~chr2 236790939 85133524 9 ++ 0.848686 3 3 0 3 2 TCGA-IS-A3K7-01A-11R-A21T-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 10 +- 1.19355 10 8 2 10 120 TCGA-IS-A3K7-01A-11R-A21T-07 FUS~Nchr16~55480860 intergenic "FUS," "-," chr16~chr16 31191548 55480860 20 +- 2.224098 19 2 17 19 92 TCGA-IS-A3K7-01A-11R-A21T-07 FUS~Nchr16~55486772 intergenic "FUS," "-," chr16~chr16 31191548 55486772 11 +- 1.515708 9 0 9 9 88 TCGA-IS-A3K7-01A-11R-A21T-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31236564 31321721 2 -- 0.693147 2 2 0 2 14 TCGA-IS-A3K7-01A-11R-A21T-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 142 -- 2.13463 142 141 1 142 106 TCGA-IS-A3K7-01A-11R-A21T-07 KDM2B~CORO1C fusion "KDM2B," "CORO1C," chr12~chr12 121877660 109095099 4 -- 1.039721 3 3 0 3 8 TCGA-IS-A3K7-01A-11R-A21T-07 MED13L~Nchr12~131906202 intergenic "MED13L," "-," chr12~chr12 116440808 131906202 2 -+ 0.693147 2 1 1 2 18 TCGA-IS-A3K7-01A-11R-A21T-07 MREG~SPAG17 fusion "MREG," "SPAG17,WDR3," chr2~chr1 216877956 118496672 17 -- 1.986967 15 13 2 15 80 TCGA-IS-A3K7-01A-11R-A21T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 83 -+ 2.08692 34 0 34 34 98 TCGA-IS-A3K7-01A-11R-A21T-07 Nchr12~122019168~TCTN1 intergenic "-," "TCTN1," chr12~chr12 122019168 111085001 10 ++ 0.950271 10 10 0 10 46 TCGA-IS-A3K7-01A-11R-A21T-07 Nchr12~122019168~TCTN1 intergenic "-," "TCTN1," chr12~chr12 122019168 111085016 11 ++ 1.46814 11 11 0 11 46 TCGA-IS-A3K7-01A-11R-A21T-07 Nchr19~28296278~SLC25A1 intergenic "-," "SLC25A1," chr19~chr22 28296278 19163589 103 ++ 1.828671 30 0 30 30 2 TCGA-IS-A3K7-01A-11R-A21T-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 69 -+ 2.806493 65 24 41 65 852 TCGA-IS-A3K7-01A-11R-A21T-07 Nchr21~17882762~Nchr21~17979453 intergenic "-," "-," chr21~chr21 17882762 17979453 5 -- 0.500402 3 1 2 3 122 TCGA-IS-A3K7-01A-11R-A21T-07 Nchr6~135126876~RP11-557H15.4 intergenic "-," "RP11-557H15.4," chr6~chr6 135126876 134852202 7 -- 1.549826 3 2 1 3 8 TCGA-IS-A3K7-01A-11R-A21T-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 101 ++ 2.992528 2 0 2 2 4 TCGA-IS-A3K7-01A-11R-A21T-07 PDIA5~Nchr3~101796614 intergenic "PDIA5," "-," chr3~chr3 122843190 101796614 12 ++ 1.583258 12 11 1 12 38 TCGA-IS-A3K7-01A-11R-A21T-07 RANBP10~USP10 fusion "RANBP10," "USP10," chr16~chr16 67805937 84749801 9 -+ 1.427061 9 9 0 9 24 TCGA-IS-A3K7-01A-11R-A21T-07 RP1-34H18.1~RP11-781A6.1 fusion "RP1-34H18.1," "RP11-781A6.1," chr12~chr12 77966046 78177043 2 ++ 0.693147 2 0 2 2 2 TCGA-IS-A3K7-01A-11R-A21T-07 SDK1~Nchr7~4391316 intergenic "SDK1," "-," chr7~chr7 4153906 4391316 11 ++ 1.672625 9 1 8 9 22 TCGA-IS-A3K7-01A-11R-A21T-07 SDK1~Nchr7~4461364 intergenic "SDK1," "-," chr7~chr7 4153906 4461364 7 ++ 1.277034 7 0 7 7 12 TCGA-IS-A3K7-01A-11R-A21T-07 TTN~AC018890.4 fusion "TTN," "AC018890.4," chr2~chr2 179594015 175649597 4 -- 1.039721 4 3 1 4 4 TCGA-IS-A3K7-01A-11R-A21T-07 USP46~Nchr4~34441137 intergenic "USP46," "-," chr4~chr4 53525282 34441137 3 -- 0.636514 3 2 1 3 10 TCGA-IS-A3K6-01A-11R-A21T-07 ATRX~NchrX~75878709 intergenic "ATRX," "-," chrX~chrX 77041468 75878709 12 -- 1.991509 12 5 6 12 44 TCGA-IS-A3K6-01A-11R-A21T-07 ATRX~NchrX~75879069 intergenic "ATRX," "-," chrX~chrX 77041468 75879069 2 -- 0.693147 2 1 1 2 34 TCGA-IS-A3K6-01A-11R-A21T-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 3 +- 1.098612 3 3 0 3 66 TCGA-IS-A3K6-01A-11R-A21T-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31237987 31323000 2 -- 0.693147 2 0 2 2 18 TCGA-IS-A3K6-01A-11R-A21T-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 330 -- 2.062346 329 328 1 329 378 TCGA-IS-A3K6-01A-11R-A21T-07 HLA-L~Nchr6~29864828 intergenic "HLA-L," "-," chr6~chr6 30229256 29864828 735 ++ 1.933839 105 104 1 105 10 TCGA-IS-A3K6-01A-11R-A21T-07 KDM5C~DMD fusion "KDM5C," "DMD," chrX~chrX 53239596 31928802 9 -- 1.581094 6 2 4 6 26 TCGA-IS-A3K6-01A-11R-A21T-07 KDM5C~NchrX~53160201 intergenic "KDM5C," "-," chrX~chrX 53239596 53160201 14 -+ 2.007556 5 0 5 5 40 TCGA-IS-A3K6-01A-11R-A21T-07 MID1~Nchr13~63534981 intergenic "MID1," "-," chrX~chr13 10851673 63534981 9 -+ 1.522955 5 3 2 5 54 TCGA-IS-A3K6-01A-11R-A21T-07 Nchr10~109196421~Nchr10~108954782 intergenic "-," "-," chr10~chr10 109196421 108954782 11 -- 1.12095 11 11 0 11 16 TCGA-IS-A3K6-01A-11R-A21T-07 Nchr11~5383946~RP11-467L20.9 intergenic "-," "C11orf10,RP11-467L20.9," chr11~chr11 5383946 61558045 2 -- 0.693147 2 0 2 2 2 TCGA-IS-A3K6-01A-11R-A21T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 62 -+ 2.347131 27 0 26 27 30 TCGA-IS-A3K6-01A-11R-A21T-07 Nchr14~42618898~Nchr14~42832109 intergenic "-," "-," chr14~chr14 42618898 42832109 9 ++ 1.889159 5 1 4 5 20 TCGA-IS-A3K6-01A-11R-A21T-07 Nchr18~2808453~SMCHD1 intergenic "-," "SMCHD1," chr18~chr18 2808453 2729345 4 -- 0.562335 3 1 2 3 14 TCGA-IS-A3K6-01A-11R-A21T-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 9 -+ 1.889159 7 3 4 7 56 TCGA-IS-A3K6-01A-11R-A21T-07 Nchr1~569174~GPNMB intergenic "-," "GPNMB," chr1~chr7 569174 23313997 3 -+ 1.098612 3 1 2 3 2 TCGA-IS-A3K6-01A-11R-A21T-07 Nchr3~27065268~LRRC3B intergenic "-," "LRRC3B," chr3~chr3 27065268 26715443 4 -- 1.039721 4 4 0 4 4 TCGA-IS-A3K6-01A-11R-A21T-07 Nchr5~93018536~NPM1 intergenic "-," "NPM1," chr5~chr5 93018536 170837597 2 -- 0.693147 2 2 0 2 2 TCGA-IS-A3K6-01A-11R-A21T-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 5 -- 1.332179 4 4 0 4 4 TCGA-IS-A3K6-01A-11R-A21T-07 Nchr7~20618404~Nchr7~20368479 intergenic "-," "-," chr7~chr7 20618404 20368479 22 -- 2.299613 18 13 5 18 56 TCGA-IS-A3K6-01A-11R-A21T-07 NchrX~121758928~NchrX~121220812 intergenic "-," "-," chrX~chrX 121758928 121220812 12 -- 1.748155 7 2 5 7 46 TCGA-IS-A3K6-01A-11R-A21T-07 NchrX~53160309~DMD intergenic "-," "DMD," chrX~chrX 53160309 31928802 8 +- 1.494175 4 4 0 4 2 TCGA-IS-A3K6-01A-11R-A21T-07 NchrX~53160309~DMD intergenic "-," "DMD," chrX~chrX 53160309 31929675 9 ++ 1.735126 9 9 0 9 18 TCGA-IS-A3K6-01A-11R-A21T-07 PIK3CB~CEP70 fusion "PIK3CB," "CEP70," chr3~chr3 138553537 138248304 2 -- 0.693147 2 2 0 2 44 TCGA-IS-A3K6-01A-11R-A21T-07 PIK3CB~CEP70 fusion "PIK3CB," "CEP70," chr3~chr3 138553537 138251412 7 -- 1.747868 7 5 2 7 46 TCGA-IS-A3K6-01A-11R-A21T-07 PIK3CB~CEP70 fusion "PIK3CB," "CEP70," chr3~chr3 138553537 138256189 4 -- 0.562335 1 1 0 1 56 TCGA-IS-A3K6-01A-11R-A21T-07 ROCK2~Nchr13~46492359 intergenic "ROCK2," "-," chr2~chr13 11332274 46492359 6 -+ 1.098612 6 4 2 6 36 TCGA-IS-A3K6-01A-11R-A21T-07 ROCK2~Nchr13~46511982 intergenic "ROCK2," "-," chr2~chr13 11332274 46511982 10 -+ 2.098147 12 2 7 12 68 TCGA-IS-A3K6-01A-11R-A21T-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 2 ++ 0.693147 2 2 0 2 22 TCGA-IS-A3K6-01A-11R-A21T-07 TPM3~KCNN3 fusion "TPM3," "KCNN3," chr1~chr1 154141781 154794660 4 -- 1.386294 2 2 0 2 16 TCGA-IS-A3K6-01A-11R-A21T-07 TPM3~KCNN3 fusion "TPM3," "KCNN3," chr1~chr1 154142876 154794660 4 -- 1.386294 2 2 0 2 8 TCGA-IS-A3K6-01A-11R-A21T-07 XPR1~RP11-502H18.2 fusion "XPR1," "RP11-502H18.2," chr1~chr1 180651547 180086450 78 +- 3.036145 22 21 1 22 12 TCGA-IF-A3RQ-01A-11R-A22K-07 AC011497.1~Nchr19~43155239 intergenic "AC011497.1," "-," chr19~chr19 42929356 43155239 5 ++ 0.673012 2 0 2 2 22 TCGA-IF-A3RQ-01A-11R-A22K-07 ATP9B~Nchr2~28173 intergenic "ATP9B," "-," chr18~chr2 76974038 28173 7 ++ 1.153742 5 4 1 5 10 TCGA-IF-A3RQ-01A-11R-A22K-07 BAZ1B~RP11-16D22.1 fusion "BAZ1B," "RP11-16D22.1," chr7~chr13 72907130 35009781 19 -- 2.484367 20 10 9 20 94 TCGA-IF-A3RQ-01A-11R-A22K-07 BAZ1B~RP11-16D22.1 fusion "BAZ1B," "RP11-16D22.1," chr7~chr13 72907130 35012569 3 -- 0.636514 3 1 2 3 38 TCGA-IF-A3RQ-01A-11R-A22K-07 CDC42BPB~AL163953.3 fusion "CDC42BPB," "AL163953.3," chr14~chr14 103465902 53992529 13 -+ 2.138397 13 5 8 13 44 TCGA-IF-A3RQ-01A-11R-A22K-07 CDC42BPB~AL163953.3 fusion "CDC42BPB," "AL163953.3," chr14~chr14 103465902 54153917 11 -+ 1.594167 9 8 1 9 54 TCGA-IF-A3RQ-01A-11R-A22K-07 CDC42BPB~Nchr14~54041071 intergenic "CDC42BPB," "-," chr14~chr14 103465902 54041071 7 -+ 1.549826 7 6 1 7 22 TCGA-IF-A3RQ-01A-11R-A22K-07 CNOT2~ZDHHC17 fusion "CNOT2," "ZDHHC17," chr12~chr12 70672054 77235805 5 ++ 1.332179 5 0 5 5 142 TCGA-IF-A3RQ-01A-11R-A22K-07 CNOT2~ZDHHC17 fusion "CNOT2," "ZDHHC17," chr12~chr12 70672054 77236699 9 ++ 2.043192 9 4 5 9 132 TCGA-IF-A3RQ-01A-11R-A22K-07 CNOT2~ZDHHC17 fusion "CNOT2," "ZDHHC17," chr12~chr12 70672054 77239489 16 ++ 2.100679 16 9 7 16 100 TCGA-IF-A3RQ-01A-11R-A22K-07 CTDSP2~HMGA2 fusion "CTDSP2," "HMGA2," chr12~chr12 58240155 66345163 18 -+ 2.274241 17 1 16 17 50 TCGA-IF-A3RQ-01A-11R-A22K-07 CTDSP2~Nchr12~75012226 intergenic "CTDSP2," "-," chr12~chr12 58240155 75012226 7 -- 1.475076 7 0 7 7 4 TCGA-IF-A3RQ-01A-11R-A22K-07 DSE~CPM fusion "DSE," "MDM2,CPM," chr6~chr12 116580130 69236109 5 +- 0.673012 5 3 2 5 18 TCGA-IF-A3RQ-01A-11R-A22K-07 EPB41L2~PTPRK fusion "EPB41L2," "PTPRK," chr6~chr6 131276245 128330413 6 -- 0.636514 6 0 6 6 6 TCGA-IF-A3RQ-01A-11R-A22K-07 FGF12~Nchr18~75485571 intergenic "FGF12," "-," chr3~chr18 192444970 75485571 5 -- 1.332179 5 4 1 5 8 TCGA-IF-A3RQ-01A-11R-A22K-07 FNIP1~CTD-2192A1.1 fusion "FNIP1," "CTD-2192A1.1," chr5~chr5 131006156 111275734 23 -+ 2.125616 20 18 2 20 164 TCGA-IF-A3RQ-01A-11R-A22K-07 FRK~SYT1 fusion "FRK," "SYT1," chr6~chr12 116288714 79611283 2 -+ 0.693147 2 2 0 2 6 TCGA-IF-A3RQ-01A-11R-A22K-07 GTF2IRD1~NchrX~77879183 intergenic "GTF2IRD1," "-," chr7~chrX 73938484 77879183 36 ++ 2.453862 34 12 22 34 152 TCGA-IF-A3RQ-01A-11R-A22K-07 GTF2IRD1~NchrX~77886487 intergenic "GTF2IRD1," "-," chr7~chrX 73938484 77886487 3 ++ 0.636514 3 0 3 3 2 TCGA-IF-A3RQ-01A-11R-A22K-07 MAN1A1~Nchr6~117185024 intergenic "MAN1A1," "-," chr6~chr6 119522419 117185024 6 -+ 1.56071 6 3 3 6 46 TCGA-IF-A3RQ-01A-11R-A22K-07 MAP3K13~FETUB fusion "MAP3K13," "FETUB," chr3~chr3 185003431 186369007 7 ++ 1.277034 7 2 5 7 8 TCGA-IF-A3RQ-01A-11R-A22K-07 MDM2~Nchr12~74231923 intergenic "MDM2," "-," chr12~chr12 69222711 74231923 20 +- 1.847901 15 13 2 15 14 TCGA-IF-A3RQ-01A-11R-A22K-07 MDM2~Nchr12~75209094 intergenic "MDM2," "-," chr12~chr12 69222711 75209094 7 ++ 1.078992 7 4 3 7 126 TCGA-IF-A3RQ-01A-11R-A22K-07 NCRNA00238~Nchr14~66584657 intergenic "NCRNA00238," "-," chr14~chr14 66962980 66584657 6 -- 1.011404 4 0 4 4 2 TCGA-IF-A3RQ-01A-11R-A22K-07 NHSL1~KIAA1244 fusion "NHSL1," "KIAA1244," chr6~chr6 138817356 138491799 221 -+ 3.119874 88 2 86 88 14 TCGA-IF-A3RQ-01A-11R-A22K-07 NHSL1~PTPRD fusion "NHSL1," "PTPRD," chr6~chr9 138768138 9018735 10 -- 2.025326 8 4 4 8 8 TCGA-IF-A3RQ-01A-11R-A22K-07 Nchr10~77530612~C10orf11 intergenic "-," "C10orf11," chr10~chr10 77530612 77795766 3 ++ 0.636514 3 0 3 3 4 TCGA-IF-A3RQ-01A-11R-A22K-07 Nchr10~86320576~Nchr10~86320784 intergenic "-," "-," chr10~chr10 86320576 86320784 4 -- 1.386294 4 4 0 4 6 TCGA-IF-A3RQ-01A-11R-A22K-07 Nchr11~47213097~RPS20 intergenic "-," "RPS20," chr11~chr8 47213097 56986962 3 +- 0.636514 1 0 1 1 38 TCGA-IF-A3RQ-01A-11R-A22K-07 Nchr12~32879962~NAP1L1 intergenic "-," "NAP1L1," chr12~chr12 32879962 76453612 3 -- 0.636514 1 1 0 1 6 TCGA-IF-A3RQ-01A-11R-A22K-07 Nchr12~58287523~SYT1 intergenic "-," "SYT1," chr12~chr12 58287523 79548536 9 -- 1.522955 9 2 7 9 78 TCGA-IF-A3RQ-01A-11R-A22K-07 Nchr12~58287523~SYT1 intergenic "-," "SYT1," chr12~chr12 58287523 79552325 13 -- 1.37782 12 1 11 12 98 TCGA-IF-A3RQ-01A-11R-A22K-07 Nchr12~68478641~C6orf191 intergenic "-," "C6orf191," chr12~chr6 68478641 130164698 7 -+ 0.9557 7 4 3 7 18 TCGA-IF-A3RQ-01A-11R-A22K-07 Nchr12~69239280~Nchr12~74278691 intergenic "-," "-," chr12~chr12 69239280 74278691 2 ++ 0.693147 2 2 0 2 60 TCGA-IF-A3RQ-01A-11R-A22K-07 Nchr12~73275804~HMGA2 intergenic "-," "HMGA2," chr12~chr12 73275804 66345163 17 ++ 2.42548 10 10 0 10 14 TCGA-IF-A3RQ-01A-11R-A22K-07 Nchr12~87345540~PTPRQ intergenic "-," "PTPRQ," chr12~chr12 87345540 80837532 8 ++ 2.079442 5 3 2 5 6 TCGA-IF-A3RQ-01A-11R-A22K-07 Nchr14~45066112~Nchr14~44862941 intergenic "-," "-," chr14~chr14 45066112 44862941 5 -- 0.673012 1 1 0 1 4 TCGA-IF-A3RQ-01A-11R-A22K-07 Nchr14~45267133~Nchr14~44862941 intergenic "-," "-," chr14~chr14 45267133 44862941 3 -- 0.636514 3 2 1 3 14 TCGA-IF-A3RQ-01A-11R-A22K-07 Nchr14~50334704~LGALS3 intergenic "-," "LGALS3," chr14~chr14 50334704 55604088 5 -+ 1.332179 5 1 4 5 28 TCGA-IF-A3RQ-01A-11R-A22K-07 Nchr17~61044110~Nchr12~74326923 intergenic "-," "-," chr17~chr12 61044110 74326923 7 ++ 1.735126 9 7 0 9 26 TCGA-IF-A3RQ-01A-11R-A22K-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 86 -+ 3.162625 81 37 43 81 820 TCGA-IF-A3RQ-01A-11R-A22K-07 Nchr1~96913707~Nchr1~96913845 intergenic "-," "-," chr1~chr1 96913707 96913845 22 -- 2.011476 22 22 0 22 2 TCGA-IF-A3RQ-01A-11R-A22K-07 Nchr2~154189841~Nchr2~154589282 intergenic "-," "-," chr2~chr2 154189841 154589282 3 ++ 1.098612 1 1 0 1 4 TCGA-IF-A3RQ-01A-11R-A22K-07 Nchr2~177065929~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065929 177065788 3 ++ 0.636514 3 0 3 3 52 TCGA-IF-A3RQ-01A-11R-A22K-07 Nchr3~106828640~Nchr3~106962098 intergenic "-," "-," chr3~chr3 106828640 106962098 6 -- 0.867563 6 5 1 6 38 TCGA-IF-A3RQ-01A-11R-A22K-07 Nchr6~114861894~Nchr9~18082759 intergenic "-," "-," chr6~chr9 114861894 18082759 3 +- 1.098612 3 1 2 3 10 TCGA-IF-A3RQ-01A-11R-A22K-07 Nchr6~120104549~Nchr6~139492270 intergenic "-," "-," chr6~chr6 120104549 139492270 23 +- 2.171116 23 10 13 23 88 TCGA-IF-A3RQ-01A-11R-A22K-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 20 ++ 1.943378 20 20 0 20 16 TCGA-IF-A3RQ-01A-11R-A22K-07 Nchr6~29856480~HLA-B intergenic "-," "HLA-B," chr6~chr6 29856480 31324034 3 -- 1.098612 2 0 2 2 62 TCGA-IF-A3RQ-01A-11R-A22K-07 Nchr9~19200530~RPS6 intergenic "-," "RPS6," chr9~chr9 19200530 19378476 3 -- 1.098612 3 0 3 3 50 TCGA-IF-A3RQ-01A-11R-A22K-07 Nchr9~44245749~LIN7A intergenic "-," "LIN7A," chr9~chr12 44245749 81191230 6 -+ 1.56071 5 3 2 5 4 TCGA-IF-A3RQ-01A-11R-A22K-07 Nchr9~44245749~OTOGL intergenic "-," "OTOGL," chr9~chr12 44245749 80655749 13 -+ 1.804372 12 9 3 12 8 TCGA-IF-A3RQ-01A-11R-A22K-07 Nchr9~8934843~Nchr12~74307737 intergenic "-," "-," chr9~chr12 8934843 74307737 4 ++ 1.039721 1 1 0 1 2 TCGA-IF-A3RQ-01A-11R-A22K-07 Nchr9~8934843~Nchr12~74312978 intergenic "-," "-," chr9~chr12 8934843 74312978 5 ++ 0.950271 1 1 0 1 4 TCGA-IF-A3RQ-01A-11R-A22K-07 NchrX~36982319~NchrX~36698022 intergenic "-," "-," chrX~chrX 36982319 36698022 3 -- 1.098612 3 0 3 3 24 TCGA-IF-A3RQ-01A-11R-A22K-07 PAWR~Nchr9~8934784 intergenic "PAWR," "-," chr12~chr9 80083509 8934784 17 -+ 2.343933 15 7 8 15 38 TCGA-IF-A3RQ-01A-11R-A22K-07 PDE10A~Nchr6~165314310 intergenic "PDE10A," "-," chr6~chr6 165826989 165314310 4 -- 1.039721 4 3 1 4 24 TCGA-IF-A3RQ-01A-11R-A22K-07 PTPRD~Nchr9~18082741 intergenic "PTPRD," "-," chr9~chr9 8857638 18082741 2 -- 0.693147 2 0 2 2 10 TCGA-IF-A3RQ-01A-11R-A22K-07 PTPRD~RP11-356I2.1 fusion "PTPRD," "RP11-356I2.1," chr9~chr6 8857638 138051734 4 -- 1.386294 4 4 0 4 16 TCGA-IF-A3RQ-01A-11R-A22K-07 PTPRK~Nchr12~74239811 intergenic "PTPRK," "-," chr6~chr12 128302261 74239811 7 -+ 1.153742 7 0 7 7 24 TCGA-IF-A3RQ-01A-11R-A22K-07 PTPRQ~Nchr9~38703999 intergenic "PTPRQ," "-," chr12~chr9 80839497 38703999 5 +- 1.332179 5 2 3 5 18 TCGA-IF-A3RQ-01A-11R-A22K-07 RAB3IP~AVIL fusion "RAB3IP," "AVIL," chr12~chr12 70189124 58208009 4 +- 0.562335 4 4 0 4 8 TCGA-IF-A3RQ-01A-11R-A22K-07 RP11-288D9.1~PTPRQ fusion "RP11-288D9.1," "PTPRQ," chr12~chr12 80849275 80862489 2 -+ 0.693147 2 1 1 2 12 TCGA-IF-A3RQ-01A-11R-A22K-07 RP11-611E13.2~Nchr12~75292534 intergenic "RP11-611E13.2," "-," chr12~chr12 70636577 75292534 3 -+ 1.098612 1 0 1 1 8 TCGA-IF-A3RQ-01A-11R-A22K-07 RP11-75C9.2~Nchr12~74300720 intergenic "RP11-75C9.2," "-," chr9~chr12 8962189 74300720 2 ++ 0.693147 2 1 1 2 4 TCGA-IF-A3RQ-01A-11R-A22K-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 2 ++ 0.693147 2 1 1 2 26 TCGA-IF-A3RQ-01A-11R-A22K-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 4 +- 0.693147 3 0 3 3 4 TCGA-IF-A3RQ-01A-11R-A22K-07 RPS12~Nchr6~151547054 intergenic "RPS12," "-," chr6~chr6 133135708 151547054 2 -- 0.693147 2 2 0 2 4 TCGA-IF-A3RQ-01A-11R-A22K-07 SAV1~C14orf182 fusion "SAV1," "C14orf182," chr14~chr14 51111462 50459591 3 -- 0.636514 3 1 2 3 12 TCGA-IF-A3RQ-01A-11R-A22K-07 STXBP5~RP11-439L18.3 fusion "STXBP5," "RP11-439L18.3," chr6~chr6 147527204 143307267 69 +- 3.050825 79 21 45 79 140 TCGA-IF-A3RQ-01A-11R-A22K-07 TSFM~Nchr14~102099452 intergenic "RP11-571M6.15,TSFM,RP11-571M6.15,TSFM," "-," chr12~chr14 58177066 102099452 42 +- 2.507675 41 8 33 41 108 TCGA-IF-A3RQ-01A-11R-A22K-07 TTLL5~Nchr14~38030444 intergenic "TTLL5," "-," chr14~chr14 76259443 38030444 3 ++ 0.636514 3 3 0 3 36 TCGA-IF-A3RQ-01A-11R-A22K-07 TTLL5~Nchr14~38033424 intergenic "TTLL5," "-," chr14~chr14 76259443 38033424 6 ++ 1.791759 6 4 2 6 36 TCGA-IF-A3RQ-01A-11R-A22K-07 UTRN~HMGA2 fusion "UTRN," "HMGA2," chr6~chr12 145021379 66232299 13 ++ 2.098147 9 1 8 9 2 TCGA-HB-A2OT-01A-11R-A21T-07 C1QBP~Nchr17~6950413 intergenic "C1QBP," "-," chr17~chr17 5338193 6950413 6 -- 1.242453 4 1 3 4 26 TCGA-HB-A2OT-01A-11R-A21T-07 C1orf183~DHRS3 fusion "C1orf183," "DHRS3," chr1~chr1 112281808 12640694 58 -- 2.873725 57 36 21 57 152 TCGA-HB-A2OT-01A-11R-A21T-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266284 94035596 2 -+ 0.693147 1 0 1 1 12 TCGA-HB-A2OT-01A-11R-A21T-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94037692 48266636 2 +- 0.693147 2 1 1 2 2 TCGA-HB-A2OT-01A-11R-A21T-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047829 48268266 3 +- 1.098612 3 0 3 3 10 TCGA-HB-A2OT-01A-11R-A21T-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049960 48273560 4 +- 1.039721 4 2 2 4 2 TCGA-HB-A2OT-01A-11R-A21T-07 CREBBP~WRAP53 fusion "CREBBP," "WRAP53,WRAP53," chr16~chr17 3860604 7591966 4 -+ 1.039721 4 1 3 4 24 TCGA-HB-A2OT-01A-11R-A21T-07 DCLK1~Nchr13~39911779 intergenic "DCLK1," "-," chr13~chr13 36396866 39911779 3 -+ 1.098612 3 0 3 3 14 TCGA-HB-A2OT-01A-11R-A21T-07 EVC2~RP11-555J4.3 fusion "EVC2," "RP11-555J4.3," chr4~chr9 5698368 32643741 4 -- 1.039721 4 2 2 4 2 TCGA-HB-A2OT-01A-11R-A21T-07 EVC2~RP11-555J4.3 fusion "EVC2," "RP11-555J4.3," chr4~chr9 5699320 32643741 8 -- 1.494175 8 4 4 8 8 TCGA-HB-A2OT-01A-11R-A21T-07 EVC~Nchr4~3654883 intergenic "EVC," "-," chr4~chr4 5735162 3654883 60 ++ 2.720386 60 29 29 60 686 TCGA-HB-A2OT-01A-11R-A21T-07 EVC~Nchr4~3654886 intergenic "EVC," "-," chr4~chr4 5735162 3654886 86 ++ 2.871524 86 43 43 86 676 TCGA-HB-A2OT-01A-11R-A21T-07 EVC~Nchr4~3654959 intergenic "EVC," "-," chr4~chr4 5735162 3654959 15 ++ 2.245952 15 7 8 15 380 TCGA-HB-A2OT-01A-11R-A21T-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32486367 32548633 3 -- 0.636514 3 0 3 3 44 TCGA-HB-A2OT-01A-11R-A21T-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 57 -- 2.170203 58 0 56 58 40 TCGA-HB-A2OT-01A-11R-A21T-07 IGFBPL1~KIAA1539 fusion "IGFBPL1," "KIAA1539," chr9~chr9 38413234 35108734 3 -- 0.636514 3 3 0 3 6 TCGA-HB-A2OT-01A-11R-A21T-07 MYH10~TEKT3 fusion "MYH10," "TEKT3," chr17~chr17 8492399 15217547 21 -- 2.42548 21 6 15 21 104 TCGA-HB-A2OT-01A-11R-A21T-07 MYO6~Nchr6~77698014 intergenic "MYO6," "-," chr6~chr6 76459140 77698014 5 ++ 1.332179 5 1 4 5 12 TCGA-HB-A2OT-01A-11R-A21T-07 MYO6~Nchr6~77782931 intergenic "MYO6," "-," chr6~chr6 76459140 77782931 18 ++ 1.83102 12 5 7 12 32 TCGA-HB-A2OT-01A-11R-A21T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 100 -+ 2.431387 47 0 47 47 58 TCGA-HB-A2OT-01A-11R-A21T-07 Nchr1~570019~Nchr1~570171 intergenic "-," "-," chr1~chr1 570019 570171 3 -- 0.636514 3 0 3 3 6 TCGA-HB-A2OT-01A-11R-A21T-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 10 ++ 1.19355 10 10 0 10 8 TCGA-HB-A2OT-01A-11R-A21T-07 Nchr8~55074725~Nchr8~55285761 intergenic "-," "-," chr8~chr8 55074725 55285761 5 ++ 1.332179 5 0 5 5 16 TCGA-HB-A2OT-01A-11R-A21T-07 Nchr9~135894806~Nchr9~135894902 intergenic "-," "-," chr9~chr9 135894806 135894902 2 -- 0.693147 2 2 0 2 2 TCGA-HB-A2OT-01A-11R-A21T-07 Nchr9~31973110~OCIAD1 intergenic "-," "OCIAD1,RP11-702A23.1,OCIAD1," chr9~chr4 31973110 48854242 5 +- 1.332179 3 3 0 3 4 TCGA-HB-A2OT-01A-11R-A21T-07 PRPSAP2~Nchr17~5560774 intergenic "PRPSAP2," "-," chr17~chr17 18775962 5560774 3 +- 0.636514 3 3 0 3 2 TCGA-HB-A2OT-01A-11R-A21T-07 PTEN~PAPSS2 fusion "PTEN," "PAPSS2," chr10~chr10 89653866 89437887 3 ++ 1.098612 2 0 2 2 26 TCGA-HB-A2OT-01A-11R-A21T-07 RNF115~Nchr1~146886581 intergenic "RNF115," "-," chr1~chr1 145611341 146886581 3 +- 0.636514 3 0 3 3 4 TCGA-HB-A2OT-01A-11R-A21T-07 RPAIN~STX8 fusion "RPAIN," "STX8," chr17~chr17 5326149 9153962 68 +- 2.968589 64 33 31 64 300 TCGA-HB-A2OT-01A-11R-A21T-07 RPAIN~STX8 fusion "RPAIN," "STX8," chr17~chr17 5331531 9153962 3 +- 1.098612 3 1 2 3 2 TCGA-HB-A2OT-01A-11R-A21T-07 TFG~GPR128 fusion "TFG," "GPR128," chr3~chr3 100438902 100348442 48 ++ 1.850731 47 33 14 47 196 TCGA-HB-A2OT-01A-11R-A21T-07 VPS53~Nchr17~14379325 intergenic "VPS53," "-," chr17~chr17 613773 14379325 3 -- 1.098612 3 3 0 3 14 TCGA-IE-A3OV-01A-11R-A22K-07 ABR~Nchr17~50857100 intergenic "ABR," "-," chr17~chr17 1081211 50857100 7 -+ 1.94591 7 4 3 7 28 TCGA-IE-A3OV-01A-11R-A22K-07 ACACA~CCL5 fusion "ACACA," "CCL5," chr17~chr17 35478277 34199468 36 -- 2.575288 36 15 21 36 90 TCGA-IE-A3OV-01A-11R-A22K-07 ACACA~CCL5 fusion "ACACA," "CCL5," chr17~chr17 35478277 34202646 7 -- 1.747868 7 4 3 7 86 TCGA-IE-A3OV-01A-11R-A22K-07 AKAP10~Nchr19~20382473 intergenic "AKAP10," "-," chr17~chr19 19827721 20382473 8 -- 1.732868 8 6 2 8 18 TCGA-IE-A3OV-01A-11R-A22K-07 ATP11B~CCDC39 fusion "ATP11B," "CCDC39," chr3~chr3 182577147 180499912 13 +- 2.204785 12 4 8 12 40 TCGA-IE-A3OV-01A-11R-A22K-07 BCAS3~Nchr17~56068306 intergenic "BCAS3," "-," chr17~chr17 58824640 56068306 3 +- 1.098612 3 3 0 3 12 TCGA-IE-A3OV-01A-11R-A22K-07 BRIP1~Nchr9~35621655 intergenic "BRIP1," "-," chr17~chr9 59934419 35621655 4 -+ 1.386294 4 1 3 4 18 TCGA-IE-A3OV-01A-11R-A22K-07 BRIP1~Nchr9~35621773 intergenic "BRIP1," "-," chr17~chr9 59934419 35621773 2 -+ 0.693147 2 2 0 2 12 TCGA-IE-A3OV-01A-11R-A22K-07 BRIP1~Nchr9~35637328 intergenic "BRIP1," "-," chr17~chr9 59934419 35637328 16 -+ 1.803719 16 13 3 16 22 TCGA-IE-A3OV-01A-11R-A22K-07 CCL5~USP32 fusion "CCL5," "USP32," chr17~chr17 34205532 58422969 3 -- 1.098612 2 2 0 2 10 TCGA-IE-A3OV-01A-11R-A22K-07 CCT6B~Nchr17~60981914 intergenic "CCT6B," "-," chr17~chr17 33266202 60981914 12 -- 1.979205 11 4 7 11 24 TCGA-IE-A3OV-01A-11R-A22K-07 CIZ1~ABR fusion "CIZ1," "ABR," chr9~chr17 130938630 936517 6 -- 1.56071 5 3 2 5 58 TCGA-IE-A3OV-01A-11R-A22K-07 CIZ1~ABR fusion "CIZ1," "ABR," chr9~chr17 130938630 936695 44 -- 2.881772 41 22 19 41 134 TCGA-IE-A3OV-01A-11R-A22K-07 CTIF~Nchr18~45481937 intergenic "CTIF," "-," chr18~chr18 46238066 45481937 13 +- 1.95126 13 4 9 13 16 TCGA-IE-A3OV-01A-11R-A22K-07 CTIF~Nchr18~45482869 intergenic "CTIF," "-," chr18~chr18 46238066 45482869 3 +- 1.098612 3 3 0 3 30 TCGA-IE-A3OV-01A-11R-A22K-07 CTIF~Nchr18~45484393 intergenic "CTIF," "-," chr18~chr18 46238066 45484393 2 +- 0.693147 2 0 2 2 8 TCGA-IE-A3OV-01A-11R-A22K-07 CYP4B1~CYP4X1 fusion "CYP4B1," "CYP4X1," chr1~chr1 47280936 47495662 4 ++ 1.386294 4 1 3 4 24 TCGA-IE-A3OV-01A-11R-A22K-07 FOXK2~ABR fusion "FOXK2," "ABR," chr17~chr17 80545148 986867 9 +- 1.522955 9 5 4 9 24 TCGA-IE-A3OV-01A-11R-A22K-07 FOXK2~SPECC1 fusion "FOXK2," "SPECC1," chr17~chr17 80529746 19960990 4 ++ 1.039721 4 2 2 4 124 TCGA-IE-A3OV-01A-11R-A22K-07 FOXK2~SPECC1 fusion "FOXK2," "SPECC1," chr17~chr17 80529746 19970507 7 ++ 1.549826 7 3 4 7 22 TCGA-IE-A3OV-01A-11R-A22K-07 FOXK2~SPECC1 fusion "FOXK2," "SPECC1," chr17~chr17 80529746 19970513 3 ++ 1.098612 3 2 1 3 28 TCGA-IE-A3OV-01A-11R-A22K-07 FOXK2~SPECC1 fusion "FOXK2," "SPECC1," chr17~chr17 80529746 19999944 42 ++ 2.80309 42 19 23 42 150 TCGA-IE-A3OV-01A-11R-A22K-07 FXR2~CAB39L fusion "FXR2," "CAB39L," chr17~chr13 7506227 49957077 5 -- 1.609438 5 3 2 5 32 TCGA-IE-A3OV-01A-11R-A22K-07 FXR2~CAB39L fusion "FXR2," "CAB39L," chr17~chr13 7506227 49975406 2 -- 0.693147 2 1 1 2 32 TCGA-IE-A3OV-01A-11R-A22K-07 FXR2~CAB39L fusion "FXR2," "CAB39L," chr17~chr13 7506227 49975723 4 -- 1.386294 4 1 3 4 40 TCGA-IE-A3OV-01A-11R-A22K-07 HGS~Nchr17~33663262 intergenic "HGS," "-," chr17~chr17 79664028 33663262 2 ++ 0.693147 2 2 0 2 6 TCGA-IE-A3OV-01A-11R-A22K-07 HGS~Nchr17~33666424 intergenic "HGS," "-," chr17~chr17 79664028 33666424 2 ++ 0.693147 2 1 1 2 20 TCGA-IE-A3OV-01A-11R-A22K-07 HGS~Nchr17~33671349 intergenic "HGS," "-," chr17~chr17 79664028 33671349 15 ++ 2.211069 15 8 7 15 54 TCGA-IE-A3OV-01A-11R-A22K-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 190 -- 2.082268 199 0 190 199 120 TCGA-IE-A3OV-01A-11R-A22K-07 IGHV3-15~IGHG1 fusion "IGHV3-15," "IGHG1," chr14~chr14 106610727 106209407 3 -- 0.636514 3 2 1 3 4 TCGA-IE-A3OV-01A-11R-A22K-07 KLHL24~MARCH7 fusion "KLHL24," "MARCH7," chr3~chr2 183369064 160619391 13 ++ 2.069202 14 12 1 14 88 TCGA-IE-A3OV-01A-11R-A22K-07 MEGF8~ITPKC fusion "MEGF8," "ITPKC," chr19~chr19 42875634 41231245 3 ++ 1.098612 3 1 2 3 10 TCGA-IE-A3OV-01A-11R-A22K-07 NOP56~Nchr12~79952582 intergenic "NOP56,NOP56," "-," chr20~chr12 2637857 79952582 4 ++ 1.386294 1 0 1 1 2 TCGA-IE-A3OV-01A-11R-A22K-07 NPLOC4~Nchr17~51105790 intergenic "NPLOC4," "-," chr17~chr17 79532531 51105790 2 -+ 0.693147 2 1 1 2 14 TCGA-IE-A3OV-01A-11R-A22K-07 Nchr10~123072730~Nchr10~122845225 intergenic "-," "-," chr10~chr10 123072730 122845225 4 -- 1.386294 3 1 2 3 16 TCGA-IE-A3OV-01A-11R-A22K-07 Nchr10~77531295~C10orf11 intergenic "-," "C10orf11," chr10~chr10 77531295 77795766 3 ++ 0.636514 3 0 3 3 2 TCGA-IE-A3OV-01A-11R-A22K-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 51 -+ 2.316413 27 0 26 27 48 TCGA-IE-A3OV-01A-11R-A22K-07 Nchr12~20342377~PDE3A intergenic "-," "PDE3A," chr12~chr12 20342377 20709594 29 ++ 2.219083 8 7 1 8 6 TCGA-IE-A3OV-01A-11R-A22K-07 Nchr12~20343979~PDE3A intergenic "-," "PDE3A," chr12~chr12 20343979 20709594 2 ++ 0.693147 1 1 0 1 6 TCGA-IE-A3OV-01A-11R-A22K-07 Nchr12~24366277~SOX5 intergenic "-," "SOX5," chr12~chr12 24366277 24048958 8 -- 1.732868 6 6 0 6 16 TCGA-IE-A3OV-01A-11R-A22K-07 Nchr12~46864045~Nchr12~47270358 intergenic "-," "-," chr12~chr12 46864045 47270358 3 ++ 1.098612 2 1 1 2 8 TCGA-IE-A3OV-01A-11R-A22K-07 Nchr15~21916043~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21916043 20876597 8 -- 1.732868 8 5 3 8 20 TCGA-IE-A3OV-01A-11R-A22K-07 Nchr15~38133618~Nchr15~37712386 intergenic "-," "-," chr15~chr15 38133618 37712386 20 -- 2.362727 11 2 9 11 18 TCGA-IE-A3OV-01A-11R-A22K-07 Nchr17~34234382~SPECC1 intergenic "-," "SPECC1," chr17~chr17 34234382 20009296 23 +- 2.713579 20 7 13 20 50 TCGA-IE-A3OV-01A-11R-A22K-07 Nchr17~50829384~TAF15 intergenic "-," "TAF15," chr17~chr17 50829384 34165428 10 ++ 1.834372 7 7 0 7 44 TCGA-IE-A3OV-01A-11R-A22K-07 Nchr17~50829514~TAF15 intergenic "-," "TAF15," chr17~chr17 50829514 34165428 26 ++ 2.397937 26 12 14 26 70 TCGA-IE-A3OV-01A-11R-A22K-07 Nchr17~50850586~Nchr9~35597281 intergenic "-," "-," chr17~chr9 50850586 35597281 6 -+ 1.791759 6 0 6 6 6 TCGA-IE-A3OV-01A-11R-A22K-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 25 -+ 2.692291 23 8 13 23 208 TCGA-IE-A3OV-01A-11R-A22K-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145013721 3 -+ 0.636514 3 0 3 3 4 TCGA-IE-A3OV-01A-11R-A22K-07 Nchr1~179888556~Nchr1~179888789 intergenic "-," "-," chr1~chr1 179888556 179888789 2 -- 0.693147 2 0 2 2 10 TCGA-IE-A3OV-01A-11R-A22K-07 Nchr2~139258325~Nchr2~139057107 intergenic "-," "-," chr2~chr2 139258325 139057107 3 -- 0.636514 2 0 2 2 8 TCGA-IE-A3OV-01A-11R-A22K-07 Nchr2~214493222~SPAG16 intergenic "-," "SPAG16," chr2~chr2 214493222 214727209 6 ++ 1.329661 3 0 3 3 4 TCGA-IE-A3OV-01A-11R-A22K-07 Nchr3~187872040~LPP intergenic "-," "LPP," chr3~chr3 187872040 188123900 2 ++ 0.693147 2 0 2 2 4 TCGA-IE-A3OV-01A-11R-A22K-07 Nchr3~59556125~FHIT intergenic "-," "FHIT," chr3~chr3 59556125 59795458 3 ++ 1.098612 3 0 3 3 12 TCGA-IE-A3OV-01A-11R-A22K-07 Nchr3~82251605~Nchr3~82465271 intergenic "-," "-," chr3~chr3 82251605 82465271 2 ++ 0.693147 2 0 2 2 12 TCGA-IE-A3OV-01A-11R-A22K-07 Nchr6~29855732~HLA-B intergenic "-," "HLA-B," chr6~chr6 29855732 31324566 6 -- 1.56071 3 2 1 3 46 TCGA-IE-A3OV-01A-11R-A22K-07 Nchr6~29856475~HLA-B intergenic "-," "HLA-B," chr6~chr6 29856475 31323322 2 -- 0.693147 2 0 2 2 1404 TCGA-IE-A3OV-01A-11R-A22K-07 Nchr6~29895882~HLA-B intergenic "-," "HLA-B," chr6~chr6 29895882 31324046 3 -- 1.098612 3 2 1 3 156 TCGA-IE-A3OV-01A-11R-A22K-07 Nchr6~8438264~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8438264 8784424 3 ++ 0.636514 3 1 2 3 12 TCGA-IE-A3OV-01A-11R-A22K-07 Nchr7~20618404~Nchr7~20368479 intergenic "-," "-," chr7~chr7 20618404 20368479 5 -- 1.332179 5 1 4 5 16 TCGA-IE-A3OV-01A-11R-A22K-07 PCBP2~Nchr8~75515884 intergenic "PCBP2,RP11-793H13.8,PCBP2," "-," chr12~chr8 53858610 75515884 3 -- 0.636514 3 3 0 3 20 TCGA-IE-A3OV-01A-11R-A22K-07 PCTP~BRIP1 fusion "PCTP," "BRIP1," chr17~chr17 53828605 59861785 5 +- 1.05492 5 2 3 5 2 TCGA-IE-A3OV-01A-11R-A22K-07 RB1~Nchr14~87500039 intergenic "RB1," "-," chr13~chr14 48881542 87500039 81 +- 2.856086 80 25 55 80 332 TCGA-IE-A3OV-01A-11R-A22K-07 RB1~Nchr14~87500039 intergenic "RB1," "-," chr13~chr14 48878185 87500039 6 +- 1.242453 6 0 6 6 30 TCGA-IE-A3OV-01A-11R-A22K-07 RB1~Nchr14~87562948 intergenic "RB1," "-," chr13~chr14 48881542 87562948 12 +- 1.671595 13 0 12 13 32 TCGA-IE-A3OV-01A-11R-A22K-07 RP11-21C17.1~RP11-600K15.1 fusion "RP11-21C17.1," "RP11-600K15.1," chr8~chr8 70090350 69836730 6 -- 1.791759 4 3 1 4 2 TCGA-IE-A3OV-01A-11R-A22K-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 31 ++ 2.593051 30 17 13 30 154 TCGA-IE-A3OV-01A-11R-A22K-07 RP11-96H19.1~Nchr12~47270358 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47270358 8 ++ 1.320888 8 3 5 8 32 TCGA-IE-A3OV-01A-11R-A22K-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 4 +- 1.039721 4 0 4 4 2 TCGA-IE-A3OV-01A-11R-A22K-07 RPS6KA2~KIFC1 fusion "RPS6KA2," "KIFC1," chr6~chr6 167040409 33365806 4 -+ 1.386294 4 4 0 4 16 TCGA-IE-A3OV-01A-11R-A22K-07 RPS8~Nchr5~33162487 intergenic "RPS8," "-," chr1~chr5 45242412 33162487 3 -- 0.636514 3 1 2 3 14 TCGA-IE-A3OV-01A-11R-A22K-07 SETDB2~AATF fusion "SETDB2," "AATF," chr13~chr17 50018993 35413901 4 ++ 1.386294 4 1 3 4 26 TCGA-IE-A3OV-01A-11R-A22K-07 SLC38A10~Nchr17~11074697 intergenic "SLC38A10," "-," chr17~chr17 79244718 11074697 19 -+ 2.114308 17 12 5 17 48 TCGA-IE-A3OV-01A-11R-A22K-07 SLC38A10~Nchr17~11074697 intergenic "SLC38A10," "-," chr17~chr17 79249769 11074697 2 -+ 0.693147 2 1 1 2 4 TCGA-IE-A3OV-01A-11R-A22K-07 SMAD7~CTIF fusion "SMAD7," "CTIF," chr18~chr18 46474754 46162985 7 -+ 1.475076 7 7 0 7 44 TCGA-IE-A3OV-01A-11R-A22K-07 SPP2~Nchr13~49489062 intergenic "SPP2," "-," chr2~chr13 234978667 49489062 7 +- 1.549826 5 4 1 5 16 TCGA-IE-A3OV-01A-11R-A22K-07 TAF15~Nchr17~14349797 intergenic "TAF15," "-," chr17~chr17 34144759 14349797 23 +- 2.283687 22 12 10 22 110 TCGA-IE-A3OV-01A-11R-A22K-07 TIMM22~C17orf51 fusion "TIMM22," "C17orf51," chr17~chr17 902824 21438799 11 +- 2.253858 11 5 5 11 40 TCGA-IE-A3OV-01A-11R-A22K-07 TMTC1~CCDC91 fusion "TMTC1," "CCDC91," chr12~chr12 29904599 28286185 3 -+ 1.098612 3 2 1 3 2 TCGA-IE-A3OV-01A-11R-A22K-07 TP53~FOXK2 fusion "WRAP53,TP53," "FOXK2," chr17~chr17 7590695 80543780 16 -+ 2.426015 15 2 13 15 60 TCGA-IE-A3OV-01A-11R-A22K-07 TP53~RGS9 fusion "WRAP53,TP53," "RGS9," chr17~chr17 7590695 63186293 2 -+ 0.693147 2 0 2 2 12 TCGA-IE-A3OV-01A-11R-A22K-07 TPM2~Nchr5~163136512 intergenic "TPM2," "-," chr9~chr5 35685277 163136512 3 -- 0.636514 2 0 2 2 22 TCGA-IE-A3OV-01A-11R-A22K-07 UBR3~Nchr2~174557094 intergenic "UBR3," "-," chr2~chr2 170806575 174557094 2 +- 0.693147 2 2 0 2 8 TCGA-IE-A3OV-01A-11R-A22K-07 WDR70~Nchr5~12595809 intergenic "WDR70," "-," chr5~chr5 37396672 12595809 3 ++ 1.098612 2 1 1 2 32 TCGA-IE-A3OV-01A-11R-A22K-07 WDSUB1~FYTTD1 fusion "WDSUB1," "FYTTD1," chr2~chr3 160132057 197483297 7 -+ 1.747868 7 2 5 7 40 TCGA-IE-A3OV-01A-11R-A22K-07 WDSUB1~FYTTD1 fusion "WDSUB1," "FYTTD1," chr2~chr3 160136272 197483297 4 -+ 1.386294 4 3 1 4 20 TCGA-IE-A3OV-01A-11R-A22K-07 ZNF192~AC011500.1 fusion "ZNF192," "AC011500.1," chr6~chr19 28117402 40010786 3 ++ 1.098612 3 0 3 3 6 TCGA-HB-A3L4-01A-11R-A21T-07 A2M~PZP fusion "A2M," "PZP," chr12~chr12 9227312 9307397 3 -- 0.636514 3 3 0 3 20 TCGA-HB-A3L4-01A-11R-A21T-07 ADCY9~SPG20 fusion "ADCY9," "SPG20," chr16~chr13 4033233 36903654 5 -- 1.609438 5 2 3 5 26 TCGA-HB-A3L4-01A-11R-A21T-07 DENND1A~CDK5RAP2 fusion "DENND1A," "CDK5RAP2," chr9~chr9 126519982 123334319 6 -- 0.867563 6 4 2 6 38 TCGA-HB-A3L4-01A-11R-A21T-07 EDF1~Nchr9~139760751 intergenic "EDF1," "-," chr9~chr9 139758307 139760751 4 +- 1.039721 4 3 1 4 34 TCGA-HB-A3L4-01A-11R-A21T-07 FBXW2~NXNL2 fusion "FBXW2," "NXNL2," chr9~chr9 123550047 91190002 6 -+ 1.56071 6 3 3 6 20 TCGA-HB-A3L4-01A-11R-A21T-07 FBXW2~Nchr9~91143394 intergenic "FBXW2," "-," chr9~chr9 123550047 91143394 6 -+ 1.329661 6 5 1 6 20 TCGA-HB-A3L4-01A-11R-A21T-07 GLIS2~TNFRSF19 fusion "GLIS2," "TNFRSF19," chr16~chr13 4366255 24190006 6 ++ 1.56071 6 6 0 6 12 TCGA-HB-A3L4-01A-11R-A21T-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 369 -- 2.379407 369 369 0 369 208 TCGA-HB-A3L4-01A-11R-A21T-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238905 31324034 3 -- 1.098612 1 1 0 1 2 TCGA-HB-A3L4-01A-11R-A21T-07 Nchr10~86320576~Nchr10~86320784 intergenic "-," "-," chr10~chr10 86320576 86320784 4 -- 1.386294 4 4 0 4 14 TCGA-HB-A3L4-01A-11R-A21T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 59 -+ 2.27729 29 0 29 29 52 TCGA-HB-A3L4-01A-11R-A21T-07 Nchr12~63359321~TMSL3 intergenic "-," "TMSL3," chr12~chr4 63359321 91760263 2 -- 0.693147 2 1 1 2 4 TCGA-HB-A3L4-01A-11R-A21T-07 Nchr12~9212152~A2M intergenic "-," "A2M," chr12~chr12 9212152 9224972 2 -+ 0.693147 1 1 0 1 156 TCGA-HB-A3L4-01A-11R-A21T-07 Nchr13~34128954~Nchr13~46508878 intergenic "-," "-," chr13~chr13 34128954 46508878 2 +- 0.693147 2 0 2 2 8 TCGA-HB-A3L4-01A-11R-A21T-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 8 ++ 1.732868 4 0 4 4 22 TCGA-HB-A3L4-01A-11R-A21T-07 Nchr2~139258325~Nchr2~139057107 intergenic "-," "-," chr2~chr2 139258325 139057107 5 -- 1.05492 3 3 0 3 4 TCGA-HB-A3L4-01A-11R-A21T-07 Nchr4~93011371~Nchr5~127163110 intergenic "-," "-," chr4~chr5 93011371 127163110 4 -- 1.039721 3 1 2 3 4 TCGA-HB-A3L4-01A-11R-A21T-07 Nchr5~113441478~Nchr5~113696642 intergenic "-," "-," chr5~chr5 113441478 113696642 3 ++ 1.098612 3 1 2 3 10 TCGA-HB-A3L4-01A-11R-A21T-07 Nchr6~142221460~Nchr6~142011005 intergenic "-," "-," chr6~chr6 142221460 142011005 5 -- 1.332179 5 1 4 5 4 TCGA-HB-A3L4-01A-11R-A21T-07 Nchr6~153603717~Nchr6~153603872 intergenic "-," "-," chr6~chr6 153603717 153603872 2 -- 0.693147 2 0 2 2 10 TCGA-HB-A3L4-01A-11R-A21T-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 9 ++ 1.735126 9 9 0 9 4 TCGA-HB-A3L4-01A-11R-A21T-07 Nchr9~28947816~LINGO2 intergenic "-," "LINGO2," chr9~chr9 28947816 28670278 22 -- 2.374111 4 1 3 4 6 TCGA-HB-A3L4-01A-11R-A21T-07 REPS2~NchrX~17389190 intergenic "REPS2," "-," chrX~chrX 17157084 17389190 2 ++ 0.693147 2 1 1 2 2 TCGA-HB-A3L4-01A-11R-A21T-07 RP11-141M1.4~Nchr13~34128865 intergenic "RP11-141M1.4," "-," chr13~chr13 33924427 34128865 11 -+ 1.972247 5 1 4 5 8 TCGA-HB-A3L4-01A-11R-A21T-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 2 ++ 0.693147 2 0 2 2 4 TCGA-HB-A3L4-01A-11R-A21T-07 RPS8~Nchr5~33162487 intergenic "RPS8," "-," chr1~chr5 45242412 33162487 4 -- 0.693147 2 2 0 2 4 TCGA-HB-A3L4-01A-11R-A21T-07 SUCLA2~Nchr13~32410239 intergenic "SUCLA2," "-," chr13~chr13 48528275 32410239 2 -+ 0.693147 1 1 0 1 26 TCGA-HB-A3L4-01A-11R-A21T-07 SUCLA2~Nchr13~32410242 intergenic "SUCLA2," "-," chr13~chr13 48528275 32410242 7 -+ 1.277034 7 4 3 7 26 TCGA-HB-A3L4-01A-11R-A21T-07 UBE3A~Nchr15~86642612 intergenic "UBE3A," "-," chr15~chr15 25583564 86642612 36 -+ 2.211504 13 3 10 13 134 TCGA-FX-A3RE-01A-11R-A22K-07 ANKHD1~MASP2 fusion "ANKHD1,ANKHD1-EIF4EBP3,ANKHD1," "MASP2," chr5~chr1 139781858 11090307 2 +- 0.693147 1 1 0 1 22 TCGA-FX-A3RE-01A-11R-A22K-07 AR~NchrX~106949529 intergenic "AR," "-," chrX~chrX 66766604 106949529 2 ++ 0.693147 2 0 2 2 12 TCGA-FX-A3RE-01A-11R-A22K-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189870183 94054922 3 ++ 1.098612 3 2 1 3 2 TCGA-FX-A3RE-01A-11R-A22K-07 DOCK4~SND1 fusion "DOCK4," "SND1," chr7~chr7 111376973 127714554 2 -+ 0.693147 2 0 2 2 2 TCGA-FX-A3RE-01A-11R-A22K-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 2 -- 0.693147 2 0 2 2 4 TCGA-FX-A3RE-01A-11R-A22K-07 MSI1~KRT78 fusion "MSI1," "KRT78," chr12~chr12 120783938 53242405 4 -- 1.386294 4 3 1 4 22 TCGA-FX-A3RE-01A-11R-A22K-07 NOP56~Nchr12~79952582 intergenic "NOP56,NOP56," "-," chr20~chr12 2637857 79952582 3 ++ 1.098612 2 0 2 2 8 TCGA-FX-A3RE-01A-11R-A22K-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 69 -+ 2.327137 28 0 28 28 66 TCGA-FX-A3RE-01A-11R-A22K-07 Nchr14~28125649~Nchr14~27791347 intergenic "-," "-," chr14~chr14 28125649 27791347 2 -- 0.693147 2 1 1 2 4 TCGA-FX-A3RE-01A-11R-A22K-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 10 -+ 1.834372 10 6 4 10 64 TCGA-FX-A3RE-01A-11R-A22K-07 Nchr3~27065268~LRRC3B intergenic "-," "LRRC3B," chr3~chr3 27065268 26715443 5 -- 1.332179 4 2 2 4 6 TCGA-FX-A3RE-01A-11R-A22K-07 Nchr3~27131768~LRRC3B intergenic "-," "LRRC3B," chr3~chr3 27131768 26715443 2 -- 0.693147 2 1 1 2 24 TCGA-FX-A3RE-01A-11R-A22K-07 Nchr5~113441478~Nchr5~113696642 intergenic "-," "-," chr5~chr5 113441478 113696642 3 ++ 1.098612 3 3 0 3 58 TCGA-FX-A3RE-01A-11R-A22K-07 Nchr9~74930006~Nchr3~20776303 intergenic "-," "-," chr9~chr3 74930006 20776303 5 +- 1.332179 5 3 2 5 2 TCGA-FX-A3RE-01A-11R-A22K-07 NchrX~56757835~NchrX~56844004 intergenic "-," "-," chrX~chrX 56757835 56844004 14 -- 1.536722 11 1 10 11 666 TCGA-FX-A3RE-01A-11R-A22K-07 PPP2R2A~C8orf40 fusion "PPP2R2A," "C8orf40," chr8~chr8 26151256 42401612 27 ++ 2.352924 27 12 15 27 42 TCGA-FX-A3RE-01A-11R-A22K-07 PPP2R2A~C8orf40 fusion "PPP2R2A," "C8orf40," chr8~chr8 26151256 42403799 5 ++ 1.05492 5 0 5 5 20 TCGA-FX-A3RE-01A-11R-A22K-07 RCN1~Nchr11~32050823 intergenic "RCN1," "-," chr11~chr11 32122154 32050823 11 +- 1.767761 11 10 1 11 46 TCGA-FX-A3RE-01A-11R-A22K-07 RCN1~Nchr11~32064992 intergenic "RCN1," "-," chr11~chr11 32122154 32064992 38 +- 2.618399 36 9 27 36 70 TCGA-FX-A3RE-01A-11R-A22K-07 RCN1~RP1-17K7.2 fusion "RCN1," "RP1-17K7.2," chr11~chr11 32122154 32058542 164 +- 3.154174 163 90 68 163 406 TCGA-FX-A3RE-01A-11R-A22K-07 RCN1~RP1-17K7.2 fusion "RCN1," "RP1-17K7.2," chr11~chr11 32122154 32061923 5 +- 0.950271 5 3 2 5 30 TCGA-FX-A3RE-01A-11R-A22K-07 RP11-371M22.1~Nchr5~113696642 intergenic "RP11-371M22.1," "-," chr5~chr5 113392868 113696642 3 ++ 0.636514 3 0 3 3 38 TCGA-FX-A3RE-01A-11R-A22K-07 RPLP1~Nchr2~177065822 intergenic "RPLP1," "-," chr15~chr2 69747526 177065822 2 ++ 0.693147 2 1 1 2 202 TCGA-FX-A3RE-01A-11R-A22K-07 RWDD3~Nchr5~148801969 intergenic "RWDD3," "-," chr1~chr5 95705132 148801969 53 +- 3.01306 52 21 29 52 218 TCGA-FX-A3RE-01A-11R-A22K-07 SND1~IMMP2L fusion "SND1," "IMMP2L," chr7~chr7 127569382 110303777 97 +- 2.973997 90 38 52 90 510 TCGA-FX-A3RE-01A-11R-A22K-07 TPM2~ACTG1 fusion "TPM2," "ACTG1," chr9~chr17 35685061 79478652 4 -- 1.386294 4 3 1 4 18 TCGA-FX-A3RE-01A-11R-A22K-07 TRA2B~RP11-118N24.3 fusion "TRA2B," "RP11-118N24.3," chr3~chr3 185655613 94807002 17 -+ 2.282374 8 0 8 8 24 TCGA-FX-A3RE-01A-11R-A22K-07 TRA2B~RP11-118N24.3 fusion "TRA2B," "RP11-118N24.3," chr3~chr3 185655613 94857030 16 -+ 2.100679 16 15 1 16 82 TCGA-FX-A3RE-01A-11R-A22K-07 UBE2E2~AC026167.1 fusion "UBE2E2," "AC026167.1," chr3~chr3 23541231 6400588 12 ++ 2.369382 6 5 1 6 46 TCGA-FX-A3TO-01A-11R-A22K-07 AC012652.1~Nchr17~41096182 intergenic "AC012652.1," "-," chr15~chr17 41556433 41096182 28 ++ 2.712839 27 12 15 27 136 TCGA-FX-A3TO-01A-11R-A22K-07 AC012652.1~Nchr17~41096182 intergenic "AC012652.1," "-," chr15~chr17 41555081 41096182 23 ++ 2.404234 22 11 11 22 106 TCGA-FX-A3TO-01A-11R-A22K-07 AC069368.3~Nchr15~55136684 intergenic "AC069368.3,PLEKHO2,AC069368.3," "-," chr15~chr15 65134227 55136684 26 ++ 2.405681 23 19 4 23 68 TCGA-FX-A3TO-01A-11R-A22K-07 AGAP1~SNX1 fusion "AGAP1," "SNX1," chr2~chr15 236957925 64404772 6 ++ 0.450561 4 4 0 4 6 TCGA-FX-A3TO-01A-11R-A22K-07 AKAP13~Nchr15~24071662 intergenic "AKAP13," "-," chr15~chr15 86129054 24071662 18 +- 2.13524 18 8 10 18 42 TCGA-FX-A3TO-01A-11R-A22K-07 ATF7IP~Nchr12~7259790 intergenic "ATF7IP," "-," chr12~chr12 14610229 7259790 2 ++ 0.693147 2 1 1 2 12 TCGA-FX-A3TO-01A-11R-A22K-07 B2M~RASGRF1 fusion "B2M," "RASGRF1," chr15~chr15 45003811 79273041 4 +- 1.386294 2 0 2 2 22 TCGA-FX-A3TO-01A-11R-A22K-07 C12orf5~PTPN6 fusion "C12orf5," "PTPN6," chr12~chr12 4430469 7060772 9 ++ 1.889159 9 2 7 9 40 TCGA-FX-A3TO-01A-11R-A22K-07 C15orf57~CBX3 fusion "C15orf57," "CBX3," chr15~chr7 40854971 26241389 3 -+ 0.636514 3 2 1 3 6 TCGA-FX-A3TO-01A-11R-A22K-07 C19orf10~MAP2K3 fusion "C19orf10," "MAP2K3," chr19~chr17 4659943 21201725 8 -+ 1.494175 7 3 4 7 14 TCGA-FX-A3TO-01A-11R-A22K-07 CCDC55~Nchr15~35606590 intergenic "CCDC55," "-," chr17~chr15 28499616 35606590 12 ++ 1.979205 7 6 1 7 6 TCGA-FX-A3TO-01A-11R-A22K-07 CCDC91~FAM66C fusion "CCDC91," "RP11-266K4.1,FAM66C," chr12~chr12 28637098 8352400 11 +- 1.972247 11 1 10 11 32 TCGA-FX-A3TO-01A-11R-A22K-07 CD276~Nchr15~67811440 intergenic "CD276," "-," chr15~chr15 73976801 67811440 5 +- 1.609438 4 4 0 4 16 TCGA-FX-A3TO-01A-11R-A22K-07 CD2AP~Nchr12~59631906 intergenic "CD2AP," "-," chr6~chr12 47522502 59631906 27 ++ 2.650968 26 12 14 26 80 TCGA-FX-A3TO-01A-11R-A22K-07 CD2AP~Nchr12~59669793 intergenic "CD2AP," "-," chr6~chr12 47522502 59669793 4 ++ 1.039721 4 0 4 4 10 TCGA-FX-A3TO-01A-11R-A22K-07 CD2AP~Nchr12~59669978 intergenic "CD2AP," "-," chr6~chr12 47522502 59669978 12 ++ 2.022809 12 9 3 12 28 TCGA-FX-A3TO-01A-11R-A22K-07 CHD2~DYX1C1 fusion "CHD2," "DYX1C1," chr15~chr15 93444529 55670574 2 +- 0.693147 2 0 2 2 20 TCGA-FX-A3TO-01A-11R-A22K-07 CHD2~DYX1C1 fusion "CHD2," "DYX1C1," chr15~chr15 93444529 55677912 12 +- 1.86368 12 12 0 12 76 TCGA-FX-A3TO-01A-11R-A22K-07 DNAJC17~TRIP4 fusion "ZFYVE19,DNAJC17," "TRIP4," chr15~chr15 41099567 64747196 27 -+ 2.496936 26 3 23 26 156 TCGA-FX-A3TO-01A-11R-A22K-07 DPP8~TRPM1 fusion "DPP8," "TRPM1," chr15~chr15 65771218 31327877 3 -- 0.636514 3 1 2 3 12 TCGA-FX-A3TO-01A-11R-A22K-07 DPP8~TRPM1 fusion "DPP8," "TRPM1," chr15~chr15 65766547 31327877 12 -- 1.632631 12 7 5 12 42 TCGA-FX-A3TO-01A-11R-A22K-07 DYX1C1~Nchr7~63894307 intergenic "DYX1C1,DYX1C1," "-," chr15~chr7 55648510 63894307 2 -+ 0.693147 2 0 2 2 2 TCGA-FX-A3TO-01A-11R-A22K-07 EIF4A3~Nchr15~93635421 intergenic "EIF4A3," "-," chr17~chr15 78117971 93635421 7 -- 1.747868 7 5 2 7 10 TCGA-FX-A3TO-01A-11R-A22K-07 ELMO1~PUS7L fusion "ELMO1," "PUS7L,RP11-210N13.1," chr7~chr12 37052904 44132149 3 -+ 1.098612 3 2 1 3 10 TCGA-FX-A3TO-01A-11R-A22K-07 EXOC2~GCNT2 fusion "EXOC2," "GCNT2," chr6~chr6 532469 10509320 3 -+ 0.636514 3 1 2 3 8 TCGA-FX-A3TO-01A-11R-A22K-07 FBN1~MYO5A fusion "FBN1," "MYO5A," chr15~chr15 48744759 52725482 5 -- 1.332179 5 2 3 5 14 TCGA-FX-A3TO-01A-11R-A22K-07 FBN1~Nchr15~58174495 intergenic "FBN1," "-," chr15~chr15 48744759 58174495 10 -- 2.025326 10 9 1 10 126 TCGA-FX-A3TO-01A-11R-A22K-07 FBN1~Nchr15~58174514 intergenic "FBN1," "-," chr15~chr15 48744759 58174514 18 -- 2.370135 15 6 9 15 136 TCGA-FX-A3TO-01A-11R-A22K-07 FBXL20~BTBD1 fusion "FBXL20," "BTBD1," chr17~chr15 37499433 83725297 13 -- 1.925121 9 9 0 9 8 TCGA-FX-A3TO-01A-11R-A22K-07 FIGF~NchrX~82134895 intergenic "FIGF," "-," chrX~chrX 15401979 82134895 3 -- 1.098612 3 1 2 3 8 TCGA-FX-A3TO-01A-11R-A22K-07 HEPH~Nchr15~73197744 intergenic "HEPH," "-," chrX~chr15 65428088 73197744 4 +- 1.386294 4 1 3 4 12 TCGA-FX-A3TO-01A-11R-A22K-07 HS3ST3B1~TMEM92 fusion "HS3ST3B1," "TMEM92," chr17~chr17 14205389 48355917 2 ++ 0.693147 2 0 2 2 2 TCGA-FX-A3TO-01A-11R-A22K-07 IDH3A~Nchr17~54676641 intergenic "IDH3A," "-," chr15~chr17 78458644 54676641 40 +- 2.729147 37 16 21 37 98 TCGA-FX-A3TO-01A-11R-A22K-07 IDH3A~Nchr17~54679920 intergenic "IDH3A," "-," chr15~chr17 78458644 54679920 9 +- 1.676988 9 5 4 9 64 TCGA-FX-A3TO-01A-11R-A22K-07 IDH3A~Nchr17~54679955 intergenic "IDH3A," "-," chr15~chr17 78458644 54679955 10 +- 2.025326 10 8 2 10 64 TCGA-FX-A3TO-01A-11R-A22K-07 IGHV3-11~IGHM fusion "IGHV3-11," "IGHM," chr14~chr14 106573635 106322322 2 -- 0.693147 2 2 0 2 2 TCGA-FX-A3TO-01A-11R-A22K-07 IQGAP1~RASGRF1 fusion "IQGAP1," "RASGRF1," chr15~chr15 90934105 79298776 5 +- 1.609438 5 2 3 5 18 TCGA-FX-A3TO-01A-11R-A22K-07 KDM5A~Nchr15~32299678 intergenic "KDM5A," "-," chr12~chr15 459787 32299678 4 -+ 1.039721 4 1 3 4 8 TCGA-FX-A3TO-01A-11R-A22K-07 KIF23~Nchr15~79387672 intergenic "KIF23," "-," chr15~chr15 69706815 79387672 9 +- 1.427061 2 1 1 2 22 TCGA-FX-A3TO-01A-11R-A22K-07 LSAMP~Nchr3~115817651 intergenic "LSAMP," "-," chr3~chr3 115529346 115817651 2 ++ 0.693147 2 1 1 2 2 TCGA-FX-A3TO-01A-11R-A22K-07 MAP2K3~Nchr15~69416156 intergenic "MAP2K3," "-," chr17~chr15 21188281 69416156 4 +- 1.039721 4 4 0 4 42 TCGA-FX-A3TO-01A-11R-A22K-07 MAP2K3~Nchr15~69422099 intergenic "MAP2K3," "-," chr17~chr15 21188281 69422099 5 +- 0.950271 5 5 0 5 4 TCGA-FX-A3TO-01A-11R-A22K-07 MARK2~NCAM1 fusion "MARK2," "NCAM1," chr11~chr11 63663105 113004171 126 ++ 2.890286 119 66 53 119 462 TCGA-FX-A3TO-01A-11R-A22K-07 NCOR1~Nchr17~33470401 intergenic "NCOR1," "-," chr17~chr17 16021202 33470401 4 -+ 1.039721 4 1 3 4 20 TCGA-FX-A3TO-01A-11R-A22K-07 NCOR1~Nchr17~33470493 intergenic "NCOR1," "-," chr17~chr17 16021202 33470493 5 -+ 0.673012 5 5 0 5 2 TCGA-FX-A3TO-01A-11R-A22K-07 NF1~Nchr15~54158892 intergenic "NF1," "-," chr17~chr15 29592357 54158892 3 +- 1.098612 3 1 2 3 176 TCGA-FX-A3TO-01A-11R-A22K-07 NF1~Nchr15~54158895 intergenic "NF1," "-," chr17~chr15 29592357 54158895 30 +- 2.276658 27 11 16 27 180 TCGA-FX-A3TO-01A-11R-A22K-07 NUSAP1~Nchr15~79967640 intergenic "NUSAP1," "-," chr15~chr15 41634652 79967640 9 ++ 1.676988 9 9 0 9 34 TCGA-FX-A3TO-01A-11R-A22K-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 99 -+ 2.640267 43 0 43 43 62 TCGA-FX-A3TO-01A-11R-A22K-07 Nchr12~110211102~C12orf75 intergenic "-," "C12orf75," chr12~chr12 110211102 105759585 6 -+ 1.56071 5 3 2 5 20 TCGA-FX-A3TO-01A-11R-A22K-07 Nchr12~110211102~C12orf75 intergenic "-," "C12orf75," chr12~chr12 110211102 105760395 2 -+ 0.693147 2 1 1 2 16 TCGA-FX-A3TO-01A-11R-A22K-07 Nchr12~13444124~RP11-405A12.2 intergenic "-," "RP11-405A12.2," chr12~chr12 13444124 20098459 5 +- 1.05492 5 0 5 5 16 TCGA-FX-A3TO-01A-11R-A22K-07 Nchr12~24366277~SOX5 intergenic "-," "SOX5," chr12~chr12 24366277 24048958 3 -- 1.098612 2 2 0 2 2 TCGA-FX-A3TO-01A-11R-A22K-07 Nchr12~6723250~PRR4 intergenic "-," "PRR4," chr12~chr12 6723250 11001006 3 -- 1.098612 3 0 3 3 2 TCGA-FX-A3TO-01A-11R-A22K-07 Nchr15~62682884~VPS13C intergenic "-," "VPS13C," chr15~chr15 62682884 62259646 13 +- 1.778233 13 13 0 13 42 TCGA-FX-A3TO-01A-11R-A22K-07 Nchr17~17257389~MYO1D intergenic "-," "MYO1D," chr17~chr17 17257389 30846656 3 -+ 1.098612 3 3 0 3 10 TCGA-FX-A3TO-01A-11R-A22K-07 Nchr17~48503244~ATP5H intergenic "-," "ATP5H," chr17~chr17 48503244 73035366 6 -- 1.791759 5 2 3 5 24 TCGA-FX-A3TO-01A-11R-A22K-07 Nchr17~5095458~PRPF8 intergenic "-," "PRPF8," chr17~chr17 5095458 1555082 30 +- 2.673167 30 27 3 30 118 TCGA-FX-A3TO-01A-11R-A22K-07 Nchr18~53560673~AC006305.1 intergenic "-," "AC006305.1," chr18~chr18 53560673 53763306 7 ++ 1.747868 6 5 1 6 46 TCGA-FX-A3TO-01A-11R-A22K-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 48 -+ 2.894704 42 27 13 42 420 TCGA-FX-A3TO-01A-11R-A22K-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 4 ++ 0.693147 4 4 0 4 2 TCGA-FX-A3TO-01A-11R-A22K-07 Nchr6~8558876~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8558876 8784424 4 ++ 1.386294 3 0 3 3 2 TCGA-FX-A3TO-01A-11R-A22K-07 Nchr7~122851462~Nchr7~123096679 intergenic "-," "-," chr7~chr7 122851462 123096679 7 ++ 1.277034 7 0 7 7 12 TCGA-FX-A3TO-01A-11R-A22K-07 Nchr7~122851497~Nchr7~123096679 intergenic "-," "-," chr7~chr7 122851497 123096679 14 ++ 2.143952 14 3 11 14 60 TCGA-FX-A3TO-01A-11R-A22K-07 Nchr9~33624872~Nchr9~33624988 intergenic "-," "-," chr9~chr9 33624872 33624988 5 -- 1.332179 4 2 2 4 26 TCGA-FX-A3TO-01A-11R-A22K-07 PDIA3~EFCAB5 fusion "PDIA3,CATSPER2P1,PDIA3," "EFCAB5," chr15~chr17 44038904 28418889 8 ++ 1.906155 8 3 5 8 22 TCGA-FX-A3TO-01A-11R-A22K-07 PDIA3~EFCAB5 fusion "PDIA3,CATSPER2P1,PDIA3," "EFCAB5," chr15~chr17 44038904 28434852 10 ++ 1.609438 10 10 0 10 166 TCGA-FX-A3TO-01A-11R-A22K-07 PLAUR~WDR45 fusion "PLAUR," "WDR45,AF196779.12,WDR45," chr19~chrX 44169468 48935771 73 -- 3.064323 61 30 31 61 218 TCGA-FX-A3TO-01A-11R-A22K-07 PLXDC1~ACE fusion "PLXDC1," "ACE," chr17~chr17 37307615 61566009 11 -+ 2.098274 10 1 9 10 36 TCGA-FX-A3TO-01A-11R-A22K-07 PNPLA4~GPR143 fusion "PNPLA4," "GPR143," chrX~chrX 7880069 9728866 2 -- 0.693147 2 1 1 2 4 TCGA-FX-A3TO-01A-11R-A22K-07 PRPSAP2~AC106017.4 fusion "PRPSAP2," "AC106017.4," chr17~chr17 18781183 19177364 8 ++ 1.732868 8 3 5 8 20 TCGA-FX-A3TO-01A-11R-A22K-07 PTPLAD1~Nchr17~14895087 intergenic "PTPLAD1," "-," chr15~chr17 65823056 14895087 14 +- 2.007556 13 2 11 13 36 TCGA-FX-A3TO-01A-11R-A22K-07 PYGO1~FBN1 fusion "PYGO1," "FBN1," chr15~chr15 55881002 48791235 4 -- 1.386294 4 3 1 4 44 TCGA-FX-A3TO-01A-11R-A22K-07 PYGO1~FBN1 fusion "PYGO1," "FBN1," chr15~chr15 55880033 48791235 3 -- 1.098612 3 3 0 3 14 TCGA-FX-A3TO-01A-11R-A22K-07 RAB5C~Nchr15~90507630 intergenic "RAB5C," "-," chr17~chr15 40306911 90507630 3 -+ 0.636514 3 3 0 3 14 TCGA-FX-A3TO-01A-11R-A22K-07 RABGAP1~Nchr3~39073994 intergenic "RABGAP1," "-," chr9~chr3 125719488 39073994 9 +- 1.303092 5 0 5 5 20 TCGA-FX-A3TO-01A-11R-A22K-07 RASGRF1~HCN4 fusion "RASGRF1," "HCN4," chr15~chr15 79264208 73636149 4 -- 1.039721 3 1 2 3 4 TCGA-FX-A3TO-01A-11R-A22K-07 RASGRF1~Nchr15~73676259 intergenic "RASGRF1," "-," chr15~chr15 79264208 73676259 9 -- 1.735126 9 6 3 9 22 TCGA-FX-A3TO-01A-11R-A22K-07 RBFA~Nchr9~118588726 intergenic "RBFA," "-," chr18~chr9 77802219 118588726 11 +- 1.46814 11 5 6 11 32 TCGA-FX-A3TO-01A-11R-A22K-07 RNF213~Nchr17~70319461 intergenic "RNF213," "-," chr17~chr17 78348389 70319461 7 +- 1.747868 7 2 5 7 26 TCGA-FX-A3TO-01A-11R-A22K-07 RNF213~Nchr17~70322087 intergenic "RNF213," "-," chr17~chr17 78348389 70322087 4 +- 1.386294 4 2 2 4 42 TCGA-FX-A3TO-01A-11R-A22K-07 RNF213~Nchr17~70379773 intergenic "RNF213," "-," chr17~chr17 78348389 70379773 9 +- 1.427061 9 4 5 9 12 TCGA-FX-A3TO-01A-11R-A22K-07 RORA~MTHFS fusion "RORA," "ST20,MTHFS," chr15~chr15 60952746 80191467 2 -- 0.693147 2 1 1 2 4 TCGA-FX-A3TO-01A-11R-A22K-07 RP1-34H18.1~RP11-781A6.1 fusion "RP1-34H18.1," "RP11-781A6.1," chr12~chr12 77966046 78177043 3 ++ 1.098612 3 3 0 3 6 TCGA-FX-A3TO-01A-11R-A22K-07 RTN4RL2~P2RX3 fusion "RTN4RL2," "P2RX3," chr11~chr11 57235563 57135483 2 ++ 0.693147 2 0 2 2 14 TCGA-FX-A3TO-01A-11R-A22K-07 SCAPER~GLCE fusion "SCAPER," "GLCE," chr15~chr15 77092589 69548133 2 -+ 0.693147 2 1 1 2 8 TCGA-FX-A3TO-01A-11R-A22K-07 SDK2~Nchr15~98745413 intergenic "SDK2," "-," chr17~chr15 71364546 98745413 5 -+ 1.609438 5 3 2 5 10 TCGA-FX-A3TO-01A-11R-A22K-07 SLC35B1~Nchr17~26079330 intergenic "SLC35B1," "-," chr17~chr17 47782486 26079330 5 -- 1.332179 4 0 4 4 12 TCGA-FX-A3TO-01A-11R-A22K-07 SNUPN~Nchr15~41902398 intergenic "SNUPN," "-," chr15~chr15 75913235 41902398 68 -- 3.278859 64 41 23 64 158 TCGA-FX-A3TO-01A-11R-A22K-07 SPAG5~SDF2 fusion "SPAG5," "SDF2," chr17~chr17 26918716 26976294 51 -- 3.136537 51 33 17 51 152 TCGA-FX-A3TO-01A-11R-A22K-07 TEAD1~INSC fusion "TEAD1," "INSC," chr11~chr11 12904672 15222370 13 ++ 1.925121 11 6 5 11 52 TCGA-FX-A3TO-01A-11R-A22K-07 TEAD4~ERC1 fusion "TEAD4," "ERC1," chr12~chr12 3069206 1553728 3 ++ 1.098612 2 2 0 2 14 TCGA-FX-A3TO-01A-11R-A22K-07 TEAD4~ERC1 fusion "TEAD4," "ERC1," chr12~chr12 3069362 1553728 2 ++ 0.693147 2 1 1 2 2 TCGA-FX-A3TO-01A-11R-A22K-07 TRIP10~MPRIP fusion "TRIP10," "MPRIP," chr19~chr17 6741292 16973177 9 ++ 1.303092 8 8 0 8 38 TCGA-FX-A3TO-01A-11R-A22K-07 TRIP10~MPRIP fusion "TRIP10," "MPRIP," chr19~chr17 6741292 16974194 4 ++ 1.039721 4 4 0 4 34 TCGA-FX-A3TO-01A-11R-A22K-07 VPS13C~EHD4 fusion "VPS13C," "EHD4," chr15~chr15 62256898 42246138 11 -- 1.972247 11 5 6 11 18 TCGA-FX-A3TO-01A-11R-A22K-07 VPS13C~EHD4 fusion "VPS13C," "EHD4," chr15~chr15 62256034 42246138 5 -- 1.609438 5 2 3 5 22 TCGA-FX-A3TO-01A-11R-A22K-07 VPS53~Nchr17~15008405 intergenic "VPS53," "-," chr17~chr17 556531 15008405 3 -+ 1.098612 3 2 1 3 20 TCGA-FX-A3TO-01A-11R-A22K-07 WSCD1~PIAS1 fusion "WSCD1," "PIAS1," chr17~chr15 5984405 68378644 3 ++ 1.098612 3 2 1 3 4 TCGA-FX-A3TO-01A-11R-A22K-07 YIF1B~Nchr15~62466744 intergenic "YIF1B," "-," chr19~chr15 38798068 62466744 36 -- 2.6782 35 17 18 35 168 TCGA-FX-A3TO-01A-11R-A22K-07 YIF1B~Nchr15~62466744 intergenic "YIF1B," "-," chr19~chr15 38798237 62466744 3 -- 0.636514 3 2 1 3 56 TCGA-FX-A3TO-01A-11R-A22K-07 ZZEF1~Nchr15~89489158 intergenic "ZZEF1," "-," chr17~chr15 3919617 89489158 7 -- 1.549826 6 1 5 6 30 TCGA-FX-A3TO-01A-11R-A22K-07 ZZEF1~Nchr15~89495868 intergenic "ZZEF1," "-," chr17~chr15 3919617 89495868 8 -- 1.559581 8 4 4 8 26 TCGA-FX-A3TO-01A-11R-A22K-07 ZZEF1~Nchr15~89495873 intergenic "ZZEF1," "-," chr17~chr15 3919617 89495873 2 -- 0.693147 2 1 1 2 24 TCGA-FX-A2QS-11A-11R-A21T-07 AC012506.3~AC016768.1 fusion "AC012506.3," "AC016768.1," chr2~chr2 23580553 23313719 6 -- 1.56071 5 0 5 5 2 TCGA-FX-A2QS-11A-11R-A21T-07 C15orf57~CBX3 fusion "C15orf57," "CBX3," chr15~chr7 40854971 26241389 2 -+ 0.693147 2 1 1 2 4 TCGA-FX-A2QS-11A-11R-A21T-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 116 -- 2.608737 116 116 0 116 100 TCGA-FX-A2QS-11A-11R-A21T-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 102 -- 2.281948 107 0 101 107 52 TCGA-FX-A2QS-11A-11R-A21T-07 NCRNA00238~Nchr14~66584657 intergenic "NCRNA00238," "-," chr14~chr14 66962980 66584657 3 -- 1.098612 1 1 0 1 2 TCGA-FX-A2QS-11A-11R-A21T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 178 -+ 2.551504 83 0 83 83 56 TCGA-FX-A2QS-11A-11R-A21T-07 Nchr14~74430442~Nchr14~74430206 intergenic "-," "-," chr14~chr14 74430442 74430206 2 ++ 0.693147 2 2 0 2 2 TCGA-FX-A2QS-11A-11R-A21T-07 Nchr14~74525048~Nchr14~74525287 intergenic "-," "-," chr14~chr14 74525048 74525287 6 -- 0.450561 6 3 3 6 52 TCGA-FX-A2QS-11A-11R-A21T-07 Nchr14~74525051~Nchr14~74525287 intergenic "-," "-," chr14~chr14 74525051 74525287 2 -- 0.693147 2 1 1 2 52 TCGA-FX-A2QS-11A-11R-A21T-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 17 -+ 2.200828 14 6 8 14 206 TCGA-FX-A2QS-11A-11R-A21T-07 Nchr5~133177643~FSTL4 intergenic "-," "FSTL4," chr5~chr5 133177643 132939684 2 -- 0.693147 2 2 0 2 2 TCGA-FX-A2QS-11A-11R-A21T-07 Nchr6~151546858~RPS12 intergenic "-," "RPS12," chr6~chr6 151546858 133138099 2 ++ 0.693147 1 0 1 1 38 TCGA-FX-A2QS-11A-11R-A21T-07 Nchr7~24484678~AC004485.3 intergenic "-," "AC004485.3," chr7~chr7 24484678 24236648 7 -- 1.747868 6 6 0 6 28 TCGA-FX-A2QS-11A-11R-A21T-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 8 ++ 1.906155 7 3 4 7 44 TCGA-FX-A2QS-11A-11R-A21T-07 TMEM106A~Nchr17~41400891 intergenic "TMEM106A," "-," chr17~chr17 41369331 41400891 5 +- 1.332179 5 3 2 5 4 TCGA-FX-A3NJ-01A-11R-A21T-07 C1orf196~KAZN fusion "C1orf196," "KAZN," chr1~chr1 14507087 14925479 3 ++ 1.098612 2 1 1 2 18 TCGA-FX-A3NJ-01A-11R-A21T-07 CES1~Nchr16~55806351 intergenic "CES1," "-," chr16~chr16 55855396 55806351 7 ++ 1.747868 2 2 0 2 2 TCGA-FX-A3NJ-01A-11R-A21T-07 CTD-2337A12.1~CAST fusion "CTD-2337A12.1," "CAST," chr5~chr5 95715356 96011243 4 ++ 1.039721 3 0 3 3 8 TCGA-FX-A3NJ-01A-11R-A21T-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 4 +- 1.039721 4 4 0 4 2 TCGA-FX-A3NJ-01A-11R-A21T-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 57 -- 2.31387 57 57 0 57 64 TCGA-FX-A3NJ-01A-11R-A21T-07 MYH11~FLNA fusion "MYH11," "FLNA," chr16~chrX 15820816 153580267 3 -- 0.636514 1 0 1 1 6 TCGA-FX-A3NJ-01A-11R-A21T-07 MYL9~ACTB fusion "MYL9," "ACTB," chr20~chr7 35177661 5568833 2 +- 0.693147 1 0 1 1 6 TCGA-FX-A3NJ-01A-11R-A21T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 36 -+ 2.334491 18 0 18 18 16 TCGA-FX-A3NJ-01A-11R-A21T-07 Nchr14~90085372~FOXN3 intergenic "-," "FOXN3," chr14~chr14 90085372 89878834 3 -- 0.636514 3 3 0 3 2 TCGA-FX-A3NJ-01A-11R-A21T-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 6 -+ 1.56071 5 1 4 5 112 TCGA-FX-A3NJ-01A-11R-A21T-07 Nchr3~187872040~LPP intergenic "-," "LPP," chr3~chr3 187872040 188123900 6 ++ 1.56071 4 0 4 4 2 TCGA-FX-A3NJ-01A-11R-A21T-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 7 ++ 0.410116 7 7 0 7 4 TCGA-FX-A3NJ-01A-11R-A21T-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 2 ++ 0.693147 2 1 1 2 2 TCGA-FX-A3NJ-01A-11R-A21T-07 STX8~Nchr13~107069899 intergenic "STX8," "-," chr17~chr13 9395146 107069899 17 -+ 2.196756 13 9 4 13 52 TCGA-FX-A3NJ-01A-11R-A21T-07 TRAPPC9~Nchr8~113102525 intergenic "TRAPPC9," "-," chr8~chr8 140898123 113102525 15 -+ 2.083766 15 3 12 15 32 TCGA-FX-A2QS-01A-11R-A21T-07 ABCA9~TANC2 fusion "ABCA9," "TANC2," chr17~chr17 66978703 61345109 22 -+ 2.476354 19 6 13 19 78 TCGA-FX-A2QS-01A-11R-A21T-07 AC006465.3~Nchr7~10492405 intergenic "AC006465.3," "-," chr7~chr7 7841374 10492405 5 +- 1.332179 2 0 2 2 2 TCGA-FX-A2QS-01A-11R-A21T-07 AC006465.3~Nchr7~10498794 intergenic "AC006465.3," "-," chr7~chr7 7841374 10498794 9 +- 1.83102 3 0 3 3 6 TCGA-FX-A2QS-01A-11R-A21T-07 AC008753.6~AFF2 fusion "AC008753.6," "AFF2," chr19~chrX 54372163 147967419 8 -+ 1.906155 7 4 3 7 8 TCGA-FX-A2QS-01A-11R-A21T-07 ACSS1~Nchr21~21798480 intergenic "ACSS1," "-," chr20~chr21 25028721 21798480 2 -- 0.693147 2 0 2 2 104 TCGA-FX-A2QS-01A-11R-A21T-07 ACSS1~Nchr21~21798484 intergenic "ACSS1," "-," chr20~chr21 25028721 21798484 40 -- 2.741503 37 13 24 37 108 TCGA-FX-A2QS-01A-11R-A21T-07 ADAMTS12~Nchr5~38644452 intergenic "ADAMTS12," "-," chr5~chr5 33881224 38644452 2 -+ 0.693147 2 0 2 2 16 TCGA-FX-A2QS-01A-11R-A21T-07 ADNP~Nchr20~48951782 intergenic "ADNP," "-," chr20~chr20 49547363 48951782 4 -- 1.039721 3 3 0 3 4 TCGA-FX-A2QS-01A-11R-A21T-07 ALX1~Nchr12~84846073 intergenic "ALX1," "-," chr12~chr12 85680759 84846073 6 +- 1.329661 4 3 1 4 4 TCGA-FX-A2QS-01A-11R-A21T-07 ALX1~Nchr12~84905760 intergenic "ALX1," "-," chr12~chr12 85680759 84905760 8 +- 1.494175 8 4 4 8 36 TCGA-FX-A2QS-01A-11R-A21T-07 ALX1~Nchr12~84957734 intergenic "ALX1," "-," chr12~chr12 85680759 84957734 7 +- 1.94591 7 3 4 7 14 TCGA-FX-A2QS-01A-11R-A21T-07 ALX1~Nchr12~84966005 intergenic "ALX1," "-," chr12~chr12 85680759 84966005 8 +- 1.559581 8 4 4 8 22 TCGA-FX-A2QS-01A-11R-A21T-07 ALX1~Nchr5~156419541 intergenic "ALX1," "-," chr12~chr5 85680759 156419541 3 ++ 1.098612 3 3 0 3 16 TCGA-FX-A2QS-01A-11R-A21T-07 ANO4~C12orf66 fusion "ANO4," "C12orf66," chr12~chr12 101111325 64609743 25 +- 2.712472 24 20 4 24 40 TCGA-FX-A2QS-01A-11R-A21T-07 B4GALT3~ERO1LB fusion "B4GALT3," "ERO1LB," chr1~chr1 161143395 236406795 14 -- 1.673118 14 2 12 14 30 TCGA-FX-A2QS-01A-11R-A21T-07 BBS9~Nchr6~66950980 intergenic "BBS9," "-," chr7~chr6 33476416 66950980 6 ++ 1.791759 3 1 2 3 140 TCGA-FX-A2QS-01A-11R-A21T-07 BBS9~Nchr6~66950980 intergenic "BBS9," "-," chr7~chr6 33427756 66950980 44 ++ 2.743536 44 11 32 44 140 TCGA-FX-A2QS-01A-11R-A21T-07 BBS9~Nchr6~66950980 intergenic "BBS9," "-," chr7~chr6 33476412 66950980 15 ++ 2.245952 13 6 7 13 142 TCGA-FX-A2QS-01A-11R-A21T-07 BBS9~Nchr7~20628602 intergenic "BBS9," "-," chr7~chr7 33427756 20628602 2 +- 0.693147 2 1 1 2 10 TCGA-FX-A2QS-01A-11R-A21T-07 BBX~VSTM1 fusion "BBX," "VSTM1," chr3~chr19 107245245 54545623 4 +- 1.386294 4 1 3 4 2 TCGA-FX-A2QS-01A-11R-A21T-07 BCL9~BEST3 fusion "BCL9," "BEST3," chr1~chr12 147013444 70049593 15 +- 2.211069 14 2 12 14 30 TCGA-FX-A2QS-01A-11R-A21T-07 BCL9~NAV3 fusion "BCL9," "NAV3," chr1~chr12 147078659 78540149 10 ++ 1.643418 4 4 0 4 18 TCGA-FX-A2QS-01A-11R-A21T-07 BTBD9~Nchr12~69559916 intergenic "BTBD9," "-," chr6~chr12 38224185 69559916 3 -+ 1.098612 1 1 0 1 6 TCGA-FX-A2QS-01A-11R-A21T-07 C12orf26~GTPBP10 fusion "C12orf26," "GTPBP10," chr12~chr7 82752603 90001469 3 ++ 0.636514 2 2 0 2 10 TCGA-FX-A2QS-01A-11R-A21T-07 C12orf26~Nchr12~68892690 intergenic "C12orf26," "-," chr12~chr12 82783701 68892690 6 ++ 1.56071 6 4 2 6 16 TCGA-FX-A2QS-01A-11R-A21T-07 C12orf66~CPM fusion "C12orf66," "CPM," chr12~chr12 64609458 69326620 4 -- 1.386294 4 2 2 4 18 TCGA-FX-A2QS-01A-11R-A21T-07 C12orf66~CPM fusion "C12orf66," "CPM," chr12~chr12 64609458 69351458 19 -- 2.479122 18 5 13 18 56 TCGA-FX-A2QS-01A-11R-A21T-07 C12orf66~Nchr12~68009638 intergenic "C12orf66," "-," chr12~chr12 64609458 68009638 225 -- 2.850031 224 131 91 224 946 TCGA-FX-A2QS-01A-11R-A21T-07 C12orf66~Nchr12~69371801 intergenic "C12orf66," "-," chr12~chr12 64609458 69371801 10 -- 1.748067 10 5 5 10 16 TCGA-FX-A2QS-01A-11R-A21T-07 CD2AP~Nchr12~87232657 intergenic "CD2AP," "-," chr6~chr12 47522502 87232657 10 +- 2.163956 8 4 4 8 26 TCGA-FX-A2QS-01A-11R-A21T-07 CD2AP~Nchr12~87281386 intergenic "CD2AP," "-," chr6~chr12 47522502 87281386 16 +- 2.306669 15 7 8 15 42 TCGA-FX-A2QS-01A-11R-A21T-07 CDC5L~MACC1 fusion "CDC5L," "MACC1," chr6~chr7 44397647 20201493 4 +- 1.386294 4 3 1 4 10 TCGA-FX-A2QS-01A-11R-A21T-07 CDC5L~Nchr12~74388582 intergenic "CDC5L," "-," chr6~chr12 44394461 74388582 5 ++ 1.332179 5 2 3 5 4 TCGA-FX-A2QS-01A-11R-A21T-07 CDK14~EBF1 fusion "CLDN12,CDK14,CLDN12," "EBF1," chr7~chr5 90123744 158126150 7 +- 1.747868 7 3 4 7 10 TCGA-FX-A2QS-01A-11R-A21T-07 CLK2~MARS fusion "CLK2," "MARS," chr1~chr12 155238084 57881720 2 -+ 0.693147 2 1 1 2 32 TCGA-FX-A2QS-01A-11R-A21T-07 CLK2~MARS fusion "CLK2," "MARS," chr1~chr12 155238084 57881813 10 -+ 2.025326 10 6 4 10 26 TCGA-FX-A2QS-01A-11R-A21T-07 CNOT2~ACP6 fusion "CNOT2,CNOT2,CNOT2," "ACP6," chr12~chr1 70637260 147131890 25 +- 2.358831 25 24 1 25 4 TCGA-FX-A2QS-01A-11R-A21T-07 CNOT2~ADH7 fusion "CNOT2,CNOT2,CNOT2," "ADH7," chr12~chr4 70637260 100350790 19 +- 2.083126 19 1 18 19 2 TCGA-FX-A2QS-01A-11R-A21T-07 CNOT2~GPR50 fusion "CNOT2,CNOT2,CNOT2," "GPR50," chr12~chrX 70637260 150348243 29 ++ 2.548315 29 0 29 29 2 TCGA-FX-A2QS-01A-11R-A21T-07 CNOT2~HMGA2 fusion "CNOT2," "HMGA2," chr12~chr12 70672054 66345163 38 ++ 2.588567 17 0 17 17 4 TCGA-FX-A2QS-01A-11R-A21T-07 CNOT2~Nchr12~87436941 intergenic "CNOT2,CNOT2,CNOT2," "-," chr12~chr12 70637260 87436941 22 +- 2.449424 12 0 12 12 2 TCGA-FX-A2QS-01A-11R-A21T-07 CNOT2~Nchr12~88826975 intergenic "CNOT2,CNOT2,CNOT2," "-," chr12~chr12 70637260 88826975 112 ++ 2.567421 104 2 102 104 26 TCGA-FX-A2QS-01A-11R-A21T-07 CNOT2~Nchr12~88844072 intergenic "CNOT2,CNOT2,CNOT2," "-," chr12~chr12 70637260 88844072 111 ++ 2.626919 109 2 107 109 16 TCGA-FX-A2QS-01A-11R-A21T-07 CNOT2~Nchr1~147173367 intergenic "CNOT2,CNOT2,CNOT2," "-," chr12~chr1 70637260 147173367 318 +- 2.689047 313 309 1 313 18 TCGA-FX-A2QS-01A-11R-A21T-07 CNOT2~Nchr1~147174555 intergenic "CNOT2,CNOT2,CNOT2," "-," chr12~chr1 70637260 147174555 5 +- 1.609438 4 4 0 4 14 TCGA-FX-A2QS-01A-11R-A21T-07 CNOT2~NchrX~124319558 intergenic "CNOT2,CNOT2,CNOT2," "-," chr12~chrX 70637260 124319558 39 +- 2.540424 8 0 8 8 2 TCGA-FX-A2QS-01A-11R-A21T-07 CNOT2~NchrX~150343483 intergenic "CNOT2,CNOT2,CNOT2," "-," chr12~chrX 70637260 150343483 6 ++ 1.56071 6 0 6 6 4 TCGA-FX-A2QS-01A-11R-A21T-07 CNOT2~PCLO fusion "CNOT2," "PCLO," chr12~chr7 70672054 82785708 5 +- 0.950271 5 0 5 5 8 TCGA-FX-A2QS-01A-11R-A21T-07 COL15A1~Nchr12~87415488 intergenic "COL15A1," "-," chr9~chr12 101829349 87415488 2 ++ 0.693147 2 0 2 2 2 TCGA-FX-A2QS-01A-11R-A21T-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266830 94034039 2 -+ 0.693147 1 1 0 1 10 TCGA-FX-A2QS-01A-11R-A21T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266264 189856240 4 -+ 1.386294 3 3 0 3 2 TCGA-FX-A2QS-01A-11R-A21T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48273978 189859267 3 -+ 0.636514 2 1 1 2 4 TCGA-FX-A2QS-01A-11R-A21T-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94045815 189864568 3 ++ 0.636514 3 3 0 3 10 TCGA-FX-A2QS-01A-11R-A21T-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189871716 48275363 2 +- 0.693147 2 1 1 2 2 TCGA-FX-A2QS-01A-11R-A21T-07 CPSF6~C12orf28 fusion "CPSF6," "C12orf28," chr12~chr12 69656342 70297424 7 ++ 1.747868 6 4 2 6 32 TCGA-FX-A2QS-01A-11R-A21T-07 CPSF6~COL9A1 fusion "CPSF6," "COL9A1," chr12~chr6 69633486 70926784 328 +- 2.956812 317 46 267 317 878 TCGA-FX-A2QS-01A-11R-A21T-07 CPSF6~Nchr12~69377135 intergenic "CPSF6," "-," chr12~chr12 69633486 69377135 3 ++ 1.098612 2 2 0 2 20 TCGA-FX-A2QS-01A-11R-A21T-07 CREB5~Nchr7~84851977 intergenic "CREB5," "-," chr7~chr7 28763949 84851977 3 ++ 1.098612 3 2 1 3 166 TCGA-FX-A2QS-01A-11R-A21T-07 CREB5~Nchr7~84853580 intergenic "CREB5," "-," chr7~chr7 28763949 84853580 54 ++ 2.604842 52 25 27 52 234 TCGA-FX-A2QS-01A-11R-A21T-07 CTC-281M20.1~SKAP2 fusion "CTC-281M20.1," "SKAP2," chr5~chr7 174403452 26779583 9 -- 1.889159 8 0 8 8 8 TCGA-FX-A2QS-01A-11R-A21T-07 CTDSP1~RP5-1116C7.1 fusion "CTDSP1," "RP5-1116C7.1," chr2~chr1 219267128 172113577 2 +- 0.693147 2 1 1 2 16 TCGA-FX-A2QS-01A-11R-A21T-07 CTNND2~TRIM14 fusion "CTNND2," "NANS,TRIM14,NANS," chr5~chr9 11346484 100839200 4 -+ 1.386294 4 2 2 4 26 TCGA-FX-A2QS-01A-11R-A21T-07 DAP~SEMA5A fusion "DAP," "SEMA5A," chr5~chr5 10760308 9066758 2 -- 0.693147 2 1 1 2 6 TCGA-FX-A2QS-01A-11R-A21T-07 DAP~SEMA5A fusion "DAP," "SEMA5A," chr5~chr5 10761126 9066758 61 -- 2.840456 46 38 8 46 160 TCGA-FX-A2QS-01A-11R-A21T-07 DBF4~VAMP4 fusion "DBF4," "VAMP4," chr7~chr1 87517374 171707603 13 +- 2.057898 7 1 6 7 8 TCGA-FX-A2QS-01A-11R-A21T-07 DCAF6~HMCN1 fusion "DCAF6," "HMCN1," chr1~chr1 168014465 185815158 41 ++ 2.801083 39 30 9 39 102 TCGA-FX-A2QS-01A-11R-A21T-07 DCAF6~Nchr12~69800940 intergenic "DCAF6," "-," chr1~chr12 168014465 69800940 10 ++ 1.497866 10 4 6 10 34 TCGA-FX-A2QS-01A-11R-A21T-07 DCAF6~YEATS4 fusion "DCAF6," "YEATS4," chr1~chr12 168014465 69783927 32 ++ 2.602025 31 15 16 31 60 TCGA-FX-A2QS-01A-11R-A21T-07 DNAH14~RP11-145A3.2 fusion "DNAH14," "RP11-145A3.2," chr1~chr1 225117537 225923942 5 +- 1.609438 5 1 4 5 30 TCGA-FX-A2QS-01A-11R-A21T-07 DNAH14~RP11-145A3.2 fusion "DNAH14," "RP11-145A3.2," chr1~chr1 225117537 225923965 3 +- 0.636514 3 0 3 3 32 TCGA-FX-A2QS-01A-11R-A21T-07 DNM2~Nchr19~18493079 intergenic "DNM2," "-," chr19~chr19 10829079 18493079 2 ++ 0.693147 2 2 0 2 32 TCGA-FX-A2QS-01A-11R-A21T-07 DNM2~Nchr19~18493099 intergenic "DNM2," "-," chr19~chr19 10829079 18493099 2 ++ 0.693147 2 1 1 2 32 TCGA-FX-A2QS-01A-11R-A21T-07 DNM2~Nchr19~18493123 intergenic "DNM2," "-," chr19~chr19 10829079 18493123 17 ++ 2.037734 16 6 10 16 32 TCGA-FX-A2QS-01A-11R-A21T-07 DNM2~Nchr19~18493160 intergenic "DNM2," "-," chr19~chr19 10829079 18493160 3 ++ 0.636514 3 1 2 3 22 TCGA-FX-A2QS-01A-11R-A21T-07 E2F7~Nchr12~46397984 intergenic "E2F7," "-," chr12~chr12 77426830 46397984 2 -+ 0.693147 2 1 1 2 82 TCGA-FX-A2QS-01A-11R-A21T-07 E2F7~Nchr12~46398360 intergenic "E2F7," "-," chr12~chr12 77426830 46398360 5 -+ 1.609438 4 2 2 4 50 TCGA-FX-A2QS-01A-11R-A21T-07 E2F7~Nchr12~46404817 intergenic "E2F7," "-," chr12~chr12 77426830 46404817 3 -+ 0.636514 3 1 2 3 32 TCGA-FX-A2QS-01A-11R-A21T-07 E2F7~Nchr12~78721156 intergenic "E2F7," "-," chr12~chr12 77426830 78721156 115 -- 2.825579 115 74 40 115 514 TCGA-FX-A2QS-01A-11R-A21T-07 E2F7~Nchr12~78731730 intergenic "E2F7," "-," chr12~chr12 77426830 78731730 7 -- 1.004242 7 4 3 7 80 TCGA-FX-A2QS-01A-11R-A21T-07 E2F7~PTPRR fusion "E2F7," "PTPRR," chr12~chr12 77426830 71158558 2 -- 0.693147 2 1 1 2 10 TCGA-FX-A2QS-01A-11R-A21T-07 ERGIC1~Nchr12~74214665 intergenic "ERGIC1," "-," chr5~chr12 172324077 74214665 4 +- 1.386294 1 0 1 1 4 TCGA-FX-A2QS-01A-11R-A21T-07 ERGIC1~Nchr5~25748967 intergenic "ERGIC1," "-," chr5~chr5 172324077 25748967 7 +- 1.747868 6 2 4 6 38 TCGA-FX-A2QS-01A-11R-A21T-07 ERGIC1~Nchr5~25790982 intergenic "ERGIC1," "-," chr5~chr5 172324077 25790982 4 +- 1.386294 3 1 2 3 46 TCGA-FX-A2QS-01A-11R-A21T-07 ETS1~UBE2V2 fusion "ETS1," "UBE2V2," chr11~chr8 128391808 48955593 119 -+ 2.923145 101 45 56 101 596 TCGA-FX-A2QS-01A-11R-A21T-07 ETS1~UBE2V2 fusion "ETS1," "UBE2V2," chr11~chr8 128391808 48962413 12 -+ 2.484907 12 7 5 12 114 TCGA-FX-A2QS-01A-11R-A21T-07 ETV1~BTBD9 fusion "ETV1," "BTBD9," chr7~chr6 13971127 38224292 6 -- 1.242453 2 1 1 2 18 TCGA-FX-A2QS-01A-11R-A21T-07 FAM65C~TMEM189-UBE2V1 fusion "FAM65C," "TMEM189,TMEM189-UBE2V1," chr20~chr20 49307663 48760158 13 -- 1.991509 5 3 2 5 16 TCGA-FX-A2QS-01A-11R-A21T-07 FAM70A~FPR2 fusion "FAM70A," "FPR2," chrX~chr19 119438204 52271898 5 -+ 1.609438 4 3 1 4 6 TCGA-FX-A2QS-01A-11R-A21T-07 FAM70A~Nchr19~52263285 intergenic "FAM70A," "-," chrX~chr19 119438204 52263285 13 -+ 2.138397 13 10 3 13 38 TCGA-FX-A2QS-01A-11R-A21T-07 FBXW11~LMAN2 fusion "FBXW11," "LMAN2," chr5~chr5 171433462 176765606 4 -- 1.039721 4 0 4 4 10 TCGA-FX-A2QS-01A-11R-A21T-07 FGF18~RP11-32D16.1 fusion "FGF18," "RP11-32D16.1," chr5~chr5 170883631 157922270 6 ++ 1.56071 6 3 3 6 52 TCGA-FX-A2QS-01A-11R-A21T-07 FRS2~Nchr12~83852731 intergenic "FRS2," "-," chr12~chr12 69925836 83852731 2 +- 0.693147 1 0 1 1 54 TCGA-FX-A2QS-01A-11R-A21T-07 FRS2~TMTC2 fusion "FRS2," "TMTC2," chr12~chr12 69864310 83379704 4 ++ 1.386294 3 3 0 3 176 TCGA-FX-A2QS-01A-11R-A21T-07 FRS2~TMTC2 fusion "FRS2," "TMTC2," chr12~chr12 69931763 83379704 34 ++ 2.455462 19 9 10 19 480 TCGA-FX-A2QS-01A-11R-A21T-07 FRS2~TMTC2 fusion "FRS2," "TMTC2," chr12~chr12 69925836 83379704 383 ++ 3.066101 156 128 28 156 442 TCGA-FX-A2QS-01A-11R-A21T-07 FXN~FPR2 fusion "FXN," "FPR2," chr9~chr19 71679951 52264184 2 ++ 0.693147 2 2 0 2 12 TCGA-FX-A2QS-01A-11R-A21T-07 FXN~Nchr19~52263285 intergenic "FXN," "-," chr9~chr19 71679951 52263285 14 ++ 1.846889 13 6 7 13 36 TCGA-FX-A2QS-01A-11R-A21T-07 GARS~Nchr6~49870906 intergenic "GARS," "-," chr7~chr6 30668285 49870906 8 +- 1.906155 8 0 8 8 10 TCGA-FX-A2QS-01A-11R-A21T-07 GLI1~Nchr12~87140520 intergenic "GLI1," "-," chr12~chr12 57856526 87140520 9 -- 2.043192 7 0 7 7 2 TCGA-FX-A2QS-01A-11R-A21T-07 GNS~NchrX~66311093 intergenic "GNS," "-," chr12~chrX 65141492 66311093 4 -- 1.039721 4 2 2 4 6 TCGA-FX-A2QS-01A-11R-A21T-07 GNS~RP11-560G2.1 fusion "GNS," "RP11-560G2.1," chr12~chr12 65141492 75644273 344 -+ 2.945409 334 138 196 334 1046 TCGA-FX-A2QS-01A-11R-A21T-07 GPC6~Nchr13~94907883 intergenic "GPC6," "-," chr13~chr13 94680148 94907883 2 ++ 0.693147 2 0 2 2 6 TCGA-FX-A2QS-01A-11R-A21T-07 GRIP1~Nchr12~84688089 intergenic "GRIP1," "-," chr12~chr12 67156067 84688089 7 -+ 1.747868 3 0 3 3 4 TCGA-FX-A2QS-01A-11R-A21T-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 100 -- 2.528139 100 100 0 100 34 TCGA-FX-A2QS-01A-11R-A21T-07 HMCN1~Nchr6~22684755 intergenic "HMCN1," "-," chr1~chr6 185935047 22684755 9 +- 2.043192 9 5 4 9 18 TCGA-FX-A2QS-01A-11R-A21T-07 HMCN1~NchrX~150473539 intergenic "HMCN1," "-," chr1~chrX 185935047 150473539 7 +- 1.747868 7 5 2 7 36 TCGA-FX-A2QS-01A-11R-A21T-07 HMCN1~NchrX~150475505 intergenic "HMCN1," "-," chr1~chrX 185935047 150475505 2 +- 0.693147 2 1 1 2 36 TCGA-FX-A2QS-01A-11R-A21T-07 JAZF1~CEP290 fusion "AC005017.1,JAZF1," "CEP290," chr7~chr12 28220082 88477007 2 -- 0.693147 2 1 1 2 4 TCGA-FX-A2QS-01A-11R-A21T-07 JAZF1~EVX1 fusion "AC005017.1,JAZF1," "EVX1," chr7~chr7 28220082 27284667 36 -+ 2.870741 33 13 20 33 100 TCGA-FX-A2QS-01A-11R-A21T-07 JAZF1~Nchr7~27254933 intergenic "AC005017.1,JAZF1," "-," chr7~chr7 28220082 27254933 6 -+ 1.56071 6 5 1 6 88 TCGA-FX-A2QS-01A-11R-A21T-07 JAZF1~Nchr7~27255034 intergenic "AC005017.1,JAZF1," "-," chr7~chr7 28220082 27255034 10 -+ 2.302585 10 4 6 10 132 TCGA-FX-A2QS-01A-11R-A21T-07 KCNN3~YEATS4 fusion "KCNN3," "YEATS4," chr1~chr12 154705479 69756568 49 -+ 2.793412 49 22 27 49 200 TCGA-FX-A2QS-01A-11R-A21T-07 KDM4C~Nchr1~238257001 intergenic "KDM4C," "-," chr9~chr1 6814745 238257001 7 +- 1.94591 7 2 5 7 22 TCGA-FX-A2QS-01A-11R-A21T-07 LMBRD2~Nchr2~146511556 intergenic "LMBRD2," "-," chr5~chr2 36136411 146511556 2 -+ 0.693147 2 1 1 2 6 TCGA-FX-A2QS-01A-11R-A21T-07 LMBRD2~Nchr2~146512246 intergenic "LMBRD2," "-," chr5~chr2 36136411 146512246 19 -+ 2.187271 18 11 7 18 24 TCGA-FX-A2QS-01A-11R-A21T-07 LMBRD2~Nchr2~146522271 intergenic "LMBRD2," "-," chr5~chr2 36136411 146522271 33 -+ 2.843207 34 22 11 34 90 TCGA-FX-A2QS-01A-11R-A21T-07 LMBRD2~Nchr5~6058522 intergenic "LMBRD2," "-," chr5~chr5 36136411 6058522 7 -+ 1.747868 6 5 1 6 18 TCGA-FX-A2QS-01A-11R-A21T-07 LOH12CR1~Nchr12~63852342 intergenic "LOH12CR1," "-," chr12~chr12 12514283 63852342 10 ++ 1.695743 10 4 6 10 36 TCGA-FX-A2QS-01A-11R-A21T-07 LOH12CR1~SPAG9 fusion "LOH12CR1," "SPAG9," chr12~chr17 12514283 49075978 2 +- 0.693147 2 0 2 2 12 TCGA-FX-A2QS-01A-11R-A21T-07 LRP6~Nchr11~22551524 intergenic "LRP6," "-," chr12~chr11 12419615 22551524 10 -+ 1.973001 8 4 4 8 12 TCGA-FX-A2QS-01A-11R-A21T-07 LRP6~Nchr12~78115008 intergenic "LRP6," "-," chr12~chr12 12419615 78115008 40 -- 2.729147 35 16 19 35 118 TCGA-FX-A2QS-01A-11R-A21T-07 LRP6~Nchr12~78132163 intergenic "LRP6," "-," chr12~chr12 12419615 78132163 157 -- 3.342821 145 69 73 145 394 TCGA-FX-A2QS-01A-11R-A21T-07 LRP6~Nchr12~78136882 intergenic "LRP6," "-," chr12~chr12 12419615 78136882 15 -- 2.430791 13 6 7 13 522 TCGA-FX-A2QS-01A-11R-A21T-07 MAN2B2~Nchr12~69559916 intergenic "MAN2B2," "-," chr4~chr12 6616082 69559916 18 ++ 2.351257 14 3 11 14 20 TCGA-FX-A2QS-01A-11R-A21T-07 MB21D2~CTLA4 fusion "MB21D2," "CTLA4," chr3~chr2 192635419 204735309 9 -+ 1.676988 8 3 5 8 14 TCGA-FX-A2QS-01A-11R-A21T-07 MDM2~AC079354.1 fusion "MDM2," "AC079354.1," chr12~chr2 69218431 203019396 3 ++ 1.098612 3 2 1 3 16 TCGA-FX-A2QS-01A-11R-A21T-07 MDM2~AC079354.1 fusion "MDM2," "AC079354.1," chr12~chr2 69222711 203019396 48 ++ 2.962121 55 31 17 55 74 TCGA-FX-A2QS-01A-11R-A21T-07 MDM2~Nchr7~9272649 intergenic "MDM2," "-," chr12~chr7 69207408 9272649 6 +- 1.791759 6 3 3 6 18 TCGA-FX-A2QS-01A-11R-A21T-07 N4BP1~GPATCH2 fusion "N4BP1," "GPATCH2," chr16~chr1 48643686 217793841 5 -- 1.332179 4 3 1 4 8 TCGA-FX-A2QS-01A-11R-A21T-07 NAV3~BRD4 fusion "NAV3," "BRD4," chr12~chr19 78452895 15355573 2 +- 0.693147 2 1 1 2 8 TCGA-FX-A2QS-01A-11R-A21T-07 NAV3~DOK3 fusion "NAV3," "DOK3," chr12~chr5 78225484 176932111 6 +- 1.791759 6 5 1 6 10 TCGA-FX-A2QS-01A-11R-A21T-07 NAV3~EVX1 fusion "NAV3," "EVX1," chr12~chr7 78225484 27284667 51 ++ 2.893415 50 31 19 50 70 TCGA-FX-A2QS-01A-11R-A21T-07 NAV3~Nchr12~85967288 intergenic "NAV3," "-," chr12~chr12 78452895 85967288 3 ++ 1.098612 3 2 1 3 2 TCGA-FX-A2QS-01A-11R-A21T-07 NAV3~Nchr12~86067117 intergenic "NAV3," "-," chr12~chr12 78452895 86067117 5 ++ 1.332179 5 2 3 5 16 TCGA-FX-A2QS-01A-11R-A21T-07 NAV3~Nchr12~86078836 intergenic "NAV3," "-," chr12~chr12 78452895 86078836 5 ++ 1.05492 5 2 3 5 26 TCGA-FX-A2QS-01A-11R-A21T-07 NAV3~Nchr12~86096659 intergenic "NAV3," "-," chr12~chr12 78452895 86096659 8 ++ 1.494175 8 4 4 8 26 TCGA-FX-A2QS-01A-11R-A21T-07 NAV3~Nchr6~22745302 intergenic "NAV3," "-," chr12~chr6 78542699 22745302 16 +- 2.166085 7 1 6 7 10 TCGA-FX-A2QS-01A-11R-A21T-07 NDUFS2~SLC24A2 fusion "NDUFS2," "SLC24A2," chr1~chr9 161172270 19597277 18 +- 2.428274 16 5 11 16 62 TCGA-FX-A2QS-01A-11R-A21T-07 NID1~Nchr12~15004068 intergenic "NID1," "-," chr1~chr12 236142295 15004068 315 -- 3.199221 246 182 64 246 836 TCGA-FX-A2QS-01A-11R-A21T-07 NID1~Nchr2~123557792 intergenic "NID1," "-," chr1~chr2 236175221 123557792 6 -- 1.329661 5 3 2 5 18 TCGA-FX-A2QS-01A-11R-A21T-07 NID1~Nchr2~123561453 intergenic "NID1," "-," chr1~chr2 236176711 123561453 6 -- 1.56071 6 4 2 6 162 TCGA-FX-A2QS-01A-11R-A21T-07 NID1~Nchr2~123561453 intergenic "NID1," "-," chr1~chr2 236175221 123561453 246 -- 3.239458 209 134 73 209 582 TCGA-FX-A2QS-01A-11R-A21T-07 NOS1AP~Nchr16~84944588 intergenic "NOS1AP," "-," chr1~chr16 162124266 84944588 6 +- 1.56071 3 0 3 3 2 TCGA-FX-A2QS-01A-11R-A21T-07 NUP107~Nchr12~73774450 intergenic "NUP107," "-," chr12~chr12 69109520 73774450 8 ++ 1.732868 8 6 2 8 28 TCGA-FX-A2QS-01A-11R-A21T-07 NUP107~Nchr12~73779165 intergenic "NUP107," "-," chr12~chr12 69109520 73779165 2 ++ 0.693147 1 1 0 1 30 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr11~22551621~Nchr11~21652152 intergenic "-," "-," chr11~chr11 22551621 21652152 3 ++ 1.098612 3 2 1 3 16 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr11~22551827~Nchr11~21652152 intergenic "-," "-," chr11~chr11 22551827 21652152 12 ++ 2.138333 10 7 3 10 60 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr11~47213097~RPS20 intergenic "-," "RPS20," chr11~chr8 47213097 56986962 2 +- 0.693147 1 0 1 1 18 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 24 -+ 1.676235 7 0 7 7 8 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr12~11343026~NANOS3 intergenic "-," "NANOS3," chr12~chr19 11343026 13991256 13 ++ 1.778233 12 2 10 12 20 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr12~57047048~TMEM5 intergenic "-," "TMEM5," chr12~chr12 57047048 64174668 8 -- 1.906155 8 1 7 8 56 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr12~67860396~SH3PXD2B intergenic "-," "SH3PXD2B," chr12~chr5 67860396 171765459 26 -+ 2.438186 25 11 14 25 72 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr12~69596789~Nchr7~49319419 intergenic "-," "-," chr12~chr7 69596789 49319419 5 +- 1.332179 5 0 5 5 12 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr12~70464743~Nchr1~152650993 intergenic "-," "-," chr12~chr1 70464743 152650993 8 +- 1.732868 7 5 2 7 6 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr12~74214590~Nchr5~25766113 intergenic "-," "-," chr12~chr5 74214590 25766113 2 -- 0.693147 1 0 1 1 6 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr12~74214590~Nchr5~25790982 intergenic "-," "-," chr12~chr5 74214590 25790982 6 -- 1.329661 3 0 3 3 6 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr12~76729299~HECW1 intergenic "-," "HECW1," chr12~chr7 76729299 43503259 16 ++ 2.339372 6 0 6 6 14 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr12~87015742~GLI1 intergenic "-," "GLI1," chr12~chr12 87015742 57853946 16 ++ 2.269639 9 7 2 9 16 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr12~87128521~GLI1 intergenic "-," "GLI1," chr12~chr12 87128521 57853946 3 ++ 1.098612 1 1 0 1 2 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr12~87232443~MGAT4C intergenic "-," "MGAT4C," chr12~chr12 87232443 86856110 5 -+ 1.609438 5 3 2 5 4 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr12~87232443~MGAT4C intergenic "-," "MGAT4C," chr12~chr12 87232443 86863245 31 -+ 2.676572 29 8 21 29 70 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr12~87436062~TSPAN8 intergenic "-," "TSPAN8," chr12~chr12 87436062 71537993 3 -- 1.098612 3 2 1 3 2 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr12~87436734~MGAT4C intergenic "-," "MGAT4C," chr12~chr12 87436734 86863245 7 -+ 1.94591 7 5 2 7 10 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr12~87436734~Nchr12~85155133 intergenic "-," "-," chr12~chr12 87436734 85155133 17 -- 2.231607 12 8 4 12 46 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr12~87436734~Nchr12~87232657 intergenic "-," "-," chr12~chr12 87436734 87232657 13 -- 2.204785 8 6 2 8 40 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr12~87436734~TSPAN8 intergenic "-," "TSPAN8," chr12~chr12 87436734 71537993 22 -- 2.45257 22 15 7 22 58 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr12~88827182~CTNND2 intergenic "-," "CTNND2," chr12~chr5 88827182 11303419 8 ++ 1.906155 7 3 4 7 22 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr12~88827182~CTNND2 intergenic "-," "CTNND2," chr12~chr5 88827182 11325254 3 ++ 1.098612 3 3 0 3 4 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr13~76509067~Nchr13~76841631 intergenic "-," "-," chr13~chr13 76509067 76841631 4 ++ 1.039721 3 1 2 3 6 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr15~35838674~Nchr15~36150188 intergenic "-," "-," chr15~chr15 35838674 36150188 8 ++ 1.906155 8 1 7 8 8 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr16~48657514~ABCC12 intergenic "-," "ABCC12," chr16~chr16 48657514 48173715 3 ++ 1.098612 2 1 1 2 22 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr16~79619777~Nchr16~79246798 intergenic "-," "-," chr16~chr16 79619777 79246798 4 -- 1.386294 4 2 2 4 10 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 17 ++ 1.773106 16 6 10 16 36 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 15 ++ 2.211069 11 5 6 11 28 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr17~67072324~CLPTM1L intergenic "-," "CLPTM1L," chr17~chr5 67072324 1321934 3 +- 1.098612 3 0 3 3 8 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151282 7 -- 1.747868 4 1 3 4 24 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 21 -- 2.491494 13 3 10 13 24 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr19~30715822~ZNF536 intergenic "-," "ZNF536," chr19~chr19 30715822 30934468 2 ++ 0.693147 2 2 0 2 18 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr19~30716577~ZNF536 intergenic "-," "ZNF536," chr19~chr19 30716577 30934468 5 ++ 1.05492 5 2 3 5 20 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr19~30718924~ZNF536 intergenic "-," "ZNF536," chr19~chr19 30718924 30934468 3 ++ 1.386294 4 1 2 4 10 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 50 -+ 2.672891 47 31 15 47 820 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr1~144543834~Nchr1~149204451 intergenic "-," "-," chr1~chr1 144543834 149204451 3 -+ 1.098612 1 1 0 1 6 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr2~45223806~KRTCAP2 intergenic "-," "KRTCAP2," chr2~chr1 45223806 155141996 16 -- 2.306669 1 0 1 1 22 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr3~106959290~RP11-611E13.2 intergenic "-," "RP11-611E13.2," chr3~chr12 106959290 70298199 2 -- 0.693147 2 2 0 2 12 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr3~73840144~NXPH1 intergenic "-," "NXPH1," chr3~chr7 73840144 8568710 14 -- 2.044931 6 2 4 6 6 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr3~73840144~NXPH1 intergenic "-," "NXPH1," chr3~chr7 73840144 8579966 21 -- 2.441661 9 1 8 9 38 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr3~73840144~Nchr7~31391447 intergenic "-," "-," chr3~chr7 73840144 31391447 8 -- 1.667462 5 0 5 5 18 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr3~73840144~PPFIA2 intergenic "-," "PPFIA2," chr3~chr12 73840144 81747118 2 -- 0.693147 1 1 0 1 6 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr4~88813581~Nchr4~88813680 intergenic "-," "-," chr4~chr4 88813581 88813680 3 -- 1.098612 3 0 3 3 12 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr7~25901764~AC003090.1 intergenic "-," "AC003090.1," chr7~chr7 25901764 25701351 4 -- 1.386294 2 1 1 2 16 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr9~14403716~Nchr1~238780441 intergenic "-," "-," chr9~chr1 14403716 238780441 2 -+ 0.693147 1 1 0 1 6 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr9~17906920~Nchr9~18163860 intergenic "-," "-," chr9~chr9 17906920 18163860 2 ++ 0.693147 2 1 1 2 6 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr9~29212920~Nchr9~28947912 intergenic "-," "-," chr9~chr9 29212920 28947912 2 -- 0.693147 2 0 2 2 4 TCGA-FX-A2QS-01A-11R-A21T-07 Nchr9~7328132~Nchr9~13790860 intergenic "-," "-," chr9~chr9 7328132 13790860 4 ++ 1.386294 4 2 2 4 8 TCGA-FX-A2QS-01A-11R-A21T-07 NchrX~119646059~ADH7 intergenic "-," "ADH7," chrX~chr4 119646059 100350790 3 +- 1.098612 3 3 0 3 8 TCGA-FX-A2QS-01A-11R-A21T-07 NchrX~120694396~HTR3A intergenic "-," "HTR3A," chrX~chr11 120694396 113852283 6 +- 1.56071 3 3 0 3 8 TCGA-FX-A2QS-01A-11R-A21T-07 NchrX~124309142~RP11-390N6.1 intergenic "-," "RP11-390N6.1," chrX~chr12 124309142 79430353 3 -- 0.636514 1 0 1 1 30 TCGA-FX-A2QS-01A-11R-A21T-07 NchrX~124318557~ODZ1 intergenic "-," "ODZ1," chrX~chrX 124318557 124097666 12 -- 2.253858 11 7 4 11 80 TCGA-FX-A2QS-01A-11R-A21T-07 NchrX~124318557~RP11-390N6.1 intergenic "-," "RP11-390N6.1," chrX~chr12 124318557 79430353 42 -- 2.969773 6 0 6 6 34 TCGA-FX-A2QS-01A-11R-A21T-07 NchrX~124319492~ODZ1 intergenic "-," "ODZ1," chrX~chrX 124319492 124097666 4 -- 0.562335 4 4 0 4 56 TCGA-FX-A2QS-01A-11R-A21T-07 NchrX~64295792~NchrX~64586518 intergenic "-," "-," chrX~chrX 64295792 64586518 3 ++ 1.098612 3 2 1 3 10 TCGA-FX-A2QS-01A-11R-A21T-07 OTOGL~HMGA2 fusion "OTOGL," "HMGA2," chr12~chr12 80699475 66221781 19 ++ 2.479122 13 7 6 13 32 TCGA-FX-A2QS-01A-11R-A21T-07 OTOGL~Nchr12~66203190 intergenic "OTOGL," "-," chr12~chr12 80699475 66203190 3 ++ 1.098612 3 1 2 3 8 TCGA-FX-A2QS-01A-11R-A21T-07 PGLS~CLEC2B fusion "PGLS," "CLEC2B,RP11-290C10.1," chr19~chr12 17628198 10021929 2 ++ 0.693147 2 0 2 2 8 TCGA-FX-A2QS-01A-11R-A21T-07 PIK3CA~RP11-134F2.2 fusion "PIK3CA," "RP11-134F2.2," chr3~chr3 178866391 186359917 11 +- 2.019815 11 0 11 11 18 TCGA-FX-A2QS-01A-11R-A21T-07 PLXDC2~Nchr6~30473831 intergenic "PLXDC2," "-," chr10~chr6 20534434 30473831 6 +- 1.791759 6 4 2 6 12 TCGA-FX-A2QS-01A-11R-A21T-07 PPFIA2~HMGA2 fusion "PPFIA2," "HMGA2," chr12~chr12 82147752 66221781 14 -+ 1.809514 12 6 6 12 38 TCGA-FX-A2QS-01A-11R-A21T-07 PPFIA2~HMGA2 fusion "PPFIA2," "HMGA2," chr12~chr12 82147752 66232299 3 -+ 1.098612 1 0 1 1 2 TCGA-FX-A2QS-01A-11R-A21T-07 PPFIA2~Nchr12~63523098 intergenic "PPFIA2," "-," chr12~chr12 82147752 63523098 4 -+ 1.039721 4 1 3 4 2 TCGA-FX-A2QS-01A-11R-A21T-07 PPFIA2~OTOGL fusion "PPFIA2," "OTOGL," chr12~chr12 82147752 80690607 24 -+ 2.20261 24 15 9 24 112 TCGA-FX-A2QS-01A-11R-A21T-07 PPFIA2~OTOGL fusion "PPFIA2," "OTOGL," chr12~chr12 82147752 80696414 19 -+ 2.059229 17 10 7 17 48 TCGA-FX-A2QS-01A-11R-A21T-07 PPFIA2~OTOGL fusion "PPFIA2," "OTOGL," chr12~chr12 82147752 80699356 5 -+ 1.609438 2 2 0 2 18 TCGA-FX-A2QS-01A-11R-A21T-07 PRR4~CTC-281M20.1 fusion "PRR4,TAS2R14,PRR4," "CTC-281M20.1," chr12~chr5 11324021 174403535 8 -- 2.079442 4 2 2 4 10 TCGA-FX-A2QS-01A-11R-A21T-07 PRR4~Nchr5~174533353 intergenic "PRR4,TAS2R14,PRR4," "-," chr12~chr5 11324021 174533353 46 -- 2.851142 28 21 7 28 58 TCGA-FX-A2QS-01A-11R-A21T-07 PTPN1~Nchr11~4860286 intergenic "PTPN1," "-," chr20~chr11 49127127 4860286 2 +- 0.693147 1 1 0 1 6 TCGA-FX-A2QS-01A-11R-A21T-07 PTPRR~NAV3 fusion "PTPRR," "NAV3," chr12~chr12 71077907 78360009 31 -+ 2.623124 25 14 11 25 62 TCGA-FX-A2QS-01A-11R-A21T-07 PTPRR~Nchr7~12074579 intergenic "PTPRR," "-," chr12~chr7 71050484 12074579 17 -+ 2.588573 17 9 8 17 50 TCGA-FX-A2QS-01A-11R-A21T-07 RAB3IP~Nchr12~70854922 intergenic "RAB3IP," "-," chr12~chr12 70189124 70854922 6 ++ 1.56071 6 2 4 6 18 TCGA-FX-A2QS-01A-11R-A21T-07 RANBP17~Nchr5~162948277 intergenic "RANBP17," "-," chr5~chr5 170308900 162948277 2 +- 0.693147 2 2 0 2 4 TCGA-FX-A2QS-01A-11R-A21T-07 RASSF3~Nchr12~78733552 intergenic "RASSF3," "-," chr12~chr12 65004523 78733552 92 ++ 3.103948 85 15 70 85 258 TCGA-FX-A2QS-01A-11R-A21T-07 RASSF3~STK10 fusion "RASSF3," "STK10," chr12~chr5 65004523 171491816 244 +- 3.240287 228 57 171 228 546 TCGA-FX-A2QS-01A-11R-A21T-07 RCAN2~DOCK2 fusion "RCAN2," "DOCK2," chr6~chr5 46214485 169267761 4 -+ 1.386294 2 0 2 2 4 TCGA-FX-A2QS-01A-11R-A21T-07 RFWD2~Nchr1~188284593 intergenic "RFWD2," "-," chr1~chr1 176153769 188284593 10 -+ 2.025326 10 9 1 10 26 TCGA-FX-A2QS-01A-11R-A21T-07 RNF216~ABCB5 fusion "RNF216," "ABCB5," chr7~chr7 5751392 20662888 8 -+ 2.079442 8 3 5 8 26 TCGA-FX-A2QS-01A-11R-A21T-07 RP1-34H18.1~GRIA3 fusion "RP1-34H18.1," "GRIA3," chr12~chrX 77966046 122622564 5 ++ 1.332179 5 1 4 5 20 TCGA-FX-A2QS-01A-11R-A21T-07 RP1-34H18.1~MIOS fusion "RP1-34H18.1," "MIOS," chr12~chr7 77718994 7612067 3 ++ 0.636514 3 0 3 3 6 TCGA-FX-A2QS-01A-11R-A21T-07 RP1-34H18.1~MIOS fusion "RP1-34H18.1," "MIOS," chr12~chr7 77718994 7628129 5 ++ 1.332179 5 2 3 5 18 TCGA-FX-A2QS-01A-11R-A21T-07 RP1-34H18.1~MIOS fusion "RP1-34H18.1," "MIOS," chr12~chr7 77718994 7634611 4 ++ 0.562335 4 1 3 4 18 TCGA-FX-A2QS-01A-11R-A21T-07 RP1-34H18.1~MIOS fusion "RP1-34H18.1," "MIOS," chr12~chr7 77718994 7635888 2 ++ 0.693147 2 0 2 2 4 TCGA-FX-A2QS-01A-11R-A21T-07 RP1-34H18.1~NAV3 fusion "RP1-34H18.1," "NAV3," chr12~chr12 77966046 78334099 51 ++ 2.801353 51 29 22 51 194 TCGA-FX-A2QS-01A-11R-A21T-07 RP1-34H18.1~Nchr12~79165713 intergenic "RP1-34H18.1," "-," chr12~chr12 77966046 79165713 14 +- 2.143952 13 8 5 13 56 TCGA-FX-A2QS-01A-11R-A21T-07 RP1-34H18.1~Nchr12~79186357 intergenic "RP1-34H18.1," "-," chr12~chr12 77966046 79186357 2 +- 0.693147 2 1 1 2 58 TCGA-FX-A2QS-01A-11R-A21T-07 RP1-34H18.1~Nchr5~176927908 intergenic "RP1-34H18.1," "-," chr12~chr5 77718994 176927908 2 ++ 0.693147 2 2 0 2 6 TCGA-FX-A2QS-01A-11R-A21T-07 RP11-14D22.2~PRICKLE2 fusion "RP11-14D22.2," "RP11-129B22.7,PRICKLE2," chr3~chr3 64430159 64184643 2 -- 0.693147 2 2 0 2 18 TCGA-FX-A2QS-01A-11R-A21T-07 RP11-166D19.1~RP5-1116C7.1 fusion "RP11-166D19.1," "RP5-1116C7.1," chr11~chr1 121971082 172113577 6 -- 1.56071 5 4 1 5 6 TCGA-FX-A2QS-01A-11R-A21T-07 RP11-272P10.2~Nchr1~238859877 intergenic "RP11-272P10.2," "-," chr9~chr1 13276573 238859877 2 -+ 0.693147 2 0 2 2 2 TCGA-FX-A2QS-01A-11R-A21T-07 RP11-320P7.1~Nchr1~146571477 intergenic "RP11-320P7.1," "-," chr12~chr1 70613173 146571477 50 -- 2.285151 49 12 37 49 222 TCGA-FX-A2QS-01A-11R-A21T-07 RP11-320P7.1~SMC2 fusion "RP11-320P7.1," "SMC2," chr12~chr9 70613173 106885389 7 -+ 1.747868 7 5 2 7 42 TCGA-FX-A2QS-01A-11R-A21T-07 RP11-390N6.1~Nchr3~73840234 intergenic "RP11-390N6.1," "-," chr12~chr3 79430266 73840234 30 -- 2.719377 3 1 2 3 8 TCGA-FX-A2QS-01A-11R-A21T-07 RP11-611E13.2~SMC2 fusion "RP11-611E13.2," "SMC2," chr12~chr9 70635961 106885389 4 -+ 1.386294 4 3 1 4 42 TCGA-FX-A2QS-01A-11R-A21T-07 RP11-611E13.2~SMC2 fusion "RP11-611E13.2," "SMC2," chr12~chr9 70636604 106885389 3 -+ 1.098612 3 1 2 3 26 TCGA-FX-A2QS-01A-11R-A21T-07 RP11-611E13.2~SMC2 fusion "RP11-611E13.2," "SMC2," chr12~chr9 70636577 106885389 7 -+ 1.747868 6 4 2 6 36 TCGA-FX-A2QS-01A-11R-A21T-07 RP11-754N21.1~Nchr12~87015657 intergenic "RP11-754N21.1," "-," chr12~chr12 78746460 87015657 25 ++ 2.733402 7 6 1 7 48 TCGA-FX-A2QS-01A-11R-A21T-07 RP11-754N21.1~Nchr12~87436941 intergenic "RP11-754N21.1," "-," chr12~chr12 78746460 87436941 81 +- 2.792599 75 33 42 75 268 TCGA-FX-A2QS-01A-11R-A21T-07 RP11-754N21.1~Nchr7~20547825 intergenic "RP11-754N21.1," "-," chr12~chr7 78746460 20547825 4 ++ 1.386294 4 1 3 4 10 TCGA-FX-A2QS-01A-11R-A21T-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 2 ++ 0.693147 2 2 0 2 4 TCGA-FX-A2QS-01A-11R-A21T-07 RP5-1116C7.1~TMTC2 fusion "RP5-1116C7.1," "TMTC2," chr1~chr12 172111276 83444683 17 -+ 2.262386 17 13 4 17 34 TCGA-FX-A2QS-01A-11R-A21T-07 RP5-1116C7.1~TMTC2 fusion "RP5-1116C7.1," "TMTC2," chr1~chr12 172113505 83444683 9 -+ 2.043192 7 2 5 7 14 TCGA-FX-A2QS-01A-11R-A21T-07 SAMD4B~Nchr8~48655610 intergenic "SAMD4B," "-," chr19~chr8 39847551 48655610 2 +- 0.693147 2 2 0 2 30 TCGA-FX-A2QS-01A-11R-A21T-07 SAMD4B~Nchr8~48655610 intergenic "SAMD4B," "-," chr19~chr8 39847729 48655610 126 +- 3.092977 124 70 54 124 328 TCGA-FX-A2QS-01A-11R-A21T-07 SEMA5A~Nchr11~133307347 intergenic "SEMA5A," "-," chr5~chr11 9066533 133307347 14 -- 2.205598 13 3 10 13 36 TCGA-FX-A2QS-01A-11R-A21T-07 SEMA5A~Nchr11~133307442 intergenic "SEMA5A," "-," chr5~chr11 9066533 133307442 9 -- 1.889159 9 2 7 9 34 TCGA-FX-A2QS-01A-11R-A21T-07 SEMA5A~Nchr11~133313448 intergenic "SEMA5A," "-," chr5~chr11 9066533 133313448 72 -- 3.088063 64 24 40 64 206 TCGA-FX-A2QS-01A-11R-A21T-07 SEMA5A~SLC6A19 fusion "SEMA5A," "SLC6A19," chr5~chr5 9066533 1208861 40 -+ 2.529697 37 14 23 37 202 TCGA-FX-A2QS-01A-11R-A21T-07 SKAP2~Nchr7~26495020 intergenic "SKAP2," "-," chr7~chr7 26765047 26495020 44 -- 2.417825 40 20 20 40 56 TCGA-FX-A2QS-01A-11R-A21T-07 SKAP2~NchrX~124319558 intergenic "SKAP2," "-," chr7~chrX 26933458 124319558 14 -- 2.304619 5 1 4 5 22 TCGA-FX-A2QS-01A-11R-A21T-07 SKAP2~RP11-781A6.1 fusion "SKAP2," "RP11-781A6.1," chr7~chr12 26765047 78177043 6 -+ 1.56071 6 5 1 6 8 TCGA-FX-A2QS-01A-11R-A21T-07 SKP2~Nchr5~37250499 intergenic "SKP2," "-," chr5~chr5 36153144 37250499 7 ++ 1.549826 7 3 4 7 14 TCGA-FX-A2QS-01A-11R-A21T-07 SKP2~Nchr5~37254685 intergenic "SKP2," "-," chr5~chr5 36153144 37254685 10 ++ 1.834372 10 8 2 10 56 TCGA-FX-A2QS-01A-11R-A21T-07 SKP2~NchrX~3967520 intergenic "SKP2," "-," chr5~chrX 36153144 3967520 3 +- 0.636514 3 1 2 3 2 TCGA-FX-A2QS-01A-11R-A21T-07 SKP2~NchrX~3970953 intergenic "SKP2," "-," chr5~chrX 36153144 3970953 7 +- 1.747868 6 0 6 6 12 TCGA-FX-A2QS-01A-11R-A21T-07 SLIT3~KCNMB4 fusion "SLIT3," "KCNMB4," chr5~chr12 168671709 70792509 11 -+ 2.145842 5 4 1 5 10 TCGA-FX-A2QS-01A-11R-A21T-07 SLIT3~Nchr12~12059013 intergenic "SLIT3," "-," chr5~chr12 168175307 12059013 73 -+ 3.02129 67 18 49 67 226 TCGA-FX-A2QS-01A-11R-A21T-07 SLIT3~Nchr12~12084107 intergenic "SLIT3," "-," chr5~chr12 168175307 12084107 21 -+ 2.136507 19 12 7 19 74 TCGA-FX-A2QS-01A-11R-A21T-07 SLIT3~Nchr5~55128624 intergenic "SLIT3," "-," chr5~chr5 168620483 55128624 6 -- 1.329661 3 3 0 3 14 TCGA-FX-A2QS-01A-11R-A21T-07 SLIT3~TBC1D30 fusion "SLIT3," "TBC1D30," chr5~chr12 168620483 65258448 7 -+ 1.351784 4 4 0 4 2 TCGA-FX-A2QS-01A-11R-A21T-07 SMC2~ODZ1 fusion "SMC2," "ODZ1," chr9~chrX 106882443 124097666 2 +- 0.693147 2 0 2 2 10 TCGA-FX-A2QS-01A-11R-A21T-07 SP4~Nchr12~67814937 intergenic "SP4," "-," chr7~chr12 21521741 67814937 3 ++ 1.098612 3 2 1 3 4 TCGA-FX-A2QS-01A-11R-A21T-07 SPAG9~Nchr9~77852940 intergenic "SPAG9," "-," chr17~chr9 49071125 77852940 5 -- 1.05492 3 2 1 3 4 TCGA-FX-A2QS-01A-11R-A21T-07 SPAG9~Nchr9~77855566 intergenic "SPAG9," "-," chr17~chr9 49071125 77855566 2 -- 0.693147 2 2 0 2 8 TCGA-FX-A2QS-01A-11R-A21T-07 SPC24~Nchr2~121259783 intergenic "SPC24," "-," chr19~chr2 11266293 121259783 4 -+ 1.386294 4 0 4 4 50 TCGA-FX-A2QS-01A-11R-A21T-07 SPC24~Nchr2~121259928 intergenic "SPC24," "-," chr19~chr2 11266293 121259928 17 -+ 2.088502 16 4 12 16 22 TCGA-FX-A2QS-01A-11R-A21T-07 STK10~GNS fusion "STK10," "GNS," chr5~chr12 171614891 65146537 8 -- 2.079442 8 7 1 8 16 TCGA-FX-A2QS-01A-11R-A21T-07 STK10~Nchr12~74551664 intergenic "STK10," "-," chr5~chr12 171614891 74551664 3 -- 1.098612 2 1 1 2 4 TCGA-FX-A2QS-01A-11R-A21T-07 STK10~Nchr12~74569620 intergenic "STK10," "-," chr5~chr12 171614891 74569620 3 -- 1.098612 3 0 3 3 4 TCGA-FX-A2QS-01A-11R-A21T-07 STK10~NchrX~62547407 intergenic "STK10," "-," chr5~chrX 171614891 62547407 3 -+ 1.098612 3 1 2 3 20 TCGA-FX-A2QS-01A-11R-A21T-07 SYT1~Nchr17~68775370 intergenic "SYT1," "-," chr12~chr17 79441142 68775370 4 +- 0.562335 1 0 1 1 6 TCGA-FX-A2QS-01A-11R-A21T-07 SYT1~RP11-113C12.3 fusion "SYT1," "RP11-113C12.3," chr12~chr12 79611465 8521578 2 ++ 0.693147 1 1 0 1 22 TCGA-FX-A2QS-01A-11R-A21T-07 TANC2~ARHGEF12 fusion "TANC2," "ARHGEF12," chr17~chr11 61151375 120317112 8 ++ 1.667462 7 6 1 7 12 TCGA-FX-A2QS-01A-11R-A21T-07 TANC2~Nchr19~36917625 intergenic "TANC2," "-," chr17~chr19 61345234 36917625 6 +- 1.242453 3 0 3 3 8 TCGA-FX-A2QS-01A-11R-A21T-07 TAX1BP1~SYT1 fusion "TAX1BP1," "SYT1," chr7~chr12 27827222 79611283 12 ++ 2.253858 8 4 4 8 28 TCGA-FX-A2QS-01A-11R-A21T-07 TCF12~Nchr11~24448056 intergenic "TCF12," "-," chr15~chr11 57565460 24448056 6 +- 1.791759 6 4 2 6 26 TCGA-FX-A2QS-01A-11R-A21T-07 TCF12~Nchr11~24484910 intergenic "TCF12," "-," chr15~chr11 57565460 24484910 9 +- 1.735126 9 6 3 9 26 TCGA-FX-A2QS-01A-11R-A21T-07 TCF12~Nchr11~24518161 intergenic "TCF12," "-," chr15~chr11 57565460 24518161 3 +- 1.098612 2 0 2 2 8 TCGA-FX-A2QS-01A-11R-A21T-07 TMTC2~C12orf28 fusion "TMTC2," "C12orf28," chr12~chr12 83081448 70287544 13 ++ 2.098147 13 5 8 13 112 TCGA-FX-A2QS-01A-11R-A21T-07 TMTC2~C12orf28 fusion "TMTC2," "C12orf28," chr12~chr12 83081448 70290936 2 ++ 0.693147 2 0 2 2 46 TCGA-FX-A2QS-01A-11R-A21T-07 TMTC2~C12orf28 fusion "TMTC2," "C12orf28," chr12~chr12 83081448 70297424 5 ++ 1.609438 4 0 4 4 24 TCGA-FX-A2QS-01A-11R-A21T-07 TMTC2~Nchr12~83852731 intergenic "TMTC2," "-," chr12~chr12 83379825 83852731 114 +- 2.939268 77 15 62 77 450 TCGA-FX-A2QS-01A-11R-A21T-07 TMTC2~Nchr12~83870167 intergenic "TMTC2," "-," chr12~chr12 83379825 83870167 9 +- 1.889159 6 1 5 6 400 TCGA-FX-A2QS-01A-11R-A21T-07 TMTC2~Nchr12~83892654 intergenic "TMTC2," "-," chr12~chr12 83379825 83892654 149 +- 3.214717 102 24 77 102 708 TCGA-FX-A2QS-01A-11R-A21T-07 TMTC2~Nchr12~83908672 intergenic "TMTC2," "-," chr12~chr12 83379825 83908672 38 +- 2.55103 16 7 9 16 62 TCGA-FX-A2QS-01A-11R-A21T-07 TMTC2~Nchr12~87436941 intergenic "TMTC2," "-," chr12~chr12 83081448 87436941 20 +- 2.319575 16 7 9 16 80 TCGA-FX-A2QS-01A-11R-A21T-07 TMTC2~RP4-580N22.2 fusion "TMTC2," "RP4-580N22.2," chr12~chr1 83081448 236121303 3 +- 1.098612 3 1 2 3 6 TCGA-FX-A2QS-01A-11R-A21T-07 TNFRSF21~Nchr6~49141632 intergenic "TNFRSF21," "-," chr6~chr6 47277152 49141632 2 -+ 0.693147 2 1 1 2 12 TCGA-FX-A2QS-01A-11R-A21T-07 TNRC18~PTPRR fusion "TNRC18," "PTPRR," chr7~chr12 5410006 71158558 3 -- 1.098612 3 2 1 3 10 TCGA-FX-A2QS-01A-11R-A21T-07 TNS3~ALG13 fusion "TNS3," "ALG13," chr7~chrX 47621649 110925360 18 -+ 2.370135 18 0 18 18 4 TCGA-FX-A2QS-01A-11R-A21T-07 TNS3~ALG13 fusion "TNS3," "ALG13," chr7~chrX 47621649 110925464 6 -+ 1.329661 6 0 6 6 4 TCGA-FX-A2QS-01A-11R-A21T-07 TOR1AIP2~AC006465.3 fusion "TOR1AIP2," "AC006465.3," chr1~chr7 179846374 7863432 4 -+ 1.386294 4 3 1 4 22 TCGA-FX-A2QS-01A-11R-A21T-07 TOR1AIP2~Nchr1~238780441 intergenic "TOR1AIP2," "-," chr1~chr1 179846828 238780441 2 -+ 0.693147 2 1 1 2 36 TCGA-FX-A2QS-01A-11R-A21T-07 TOR1AIP2~Nchr1~238780441 intergenic "TOR1AIP2," "-," chr1~chr1 179846374 238780441 77 -+ 2.987503 70 42 28 70 186 TCGA-FX-A2QS-01A-11R-A21T-07 TOR1AIP2~Nchr7~21201894 intergenic "TOR1AIP2," "-," chr1~chr7 179846374 21201894 59 -- 2.981914 43 31 12 43 126 TCGA-FX-A2QS-01A-11R-A21T-07 TOR1AIP2~Nchr9~14403838 intergenic "TOR1AIP2," "-," chr1~chr9 179846374 14403838 6 -- 1.56071 6 4 2 6 10 TCGA-FX-A2QS-01A-11R-A21T-07 TOR1AIP2~Nchr9~14417576 intergenic "TOR1AIP2," "-," chr1~chr9 179846374 14417576 21 -- 2.491494 9 8 1 9 24 TCGA-FX-A2QS-01A-11R-A21T-07 TOR1AIP2~Nchr9~14435174 intergenic "TOR1AIP2," "-," chr1~chr9 179846374 14435174 3 -- 1.098612 2 1 1 2 6 TCGA-FX-A2QS-01A-11R-A21T-07 TRERF1~HYDIN fusion "TRERF1," "HYDIN," chr6~chr16 42418915 70975722 9 -- 2.197225 9 6 3 9 30 TCGA-FX-A2QS-01A-11R-A21T-07 UBXN4~Nchr12~74300720 intergenic "UBXN4," "-," chr2~chr12 136533921 74300720 6 ++ 1.56071 6 4 2 6 36 TCGA-FX-A2QS-01A-11R-A21T-07 UBXN4~Nchr12~74312978 intergenic "UBXN4," "-," chr2~chr12 136533921 74312978 3 ++ 1.098612 3 1 2 3 14 TCGA-FX-A2QS-01A-11R-A21T-07 UGGT1~Nchr12~84201928 intergenic "UGGT1," "-," chr2~chr12 128885026 84201928 22 +- 2.083642 18 4 14 18 76 TCGA-FX-A2QS-01A-11R-A21T-07 USP6NL~Nchr10~14032138 intergenic "USP6NL,AL512631.1," "-," chr10~chr10 11639630 14032138 6 -+ 1.242453 6 4 2 6 8 TCGA-FX-A2QS-01A-11R-A21T-07 USP6NL~Nchr10~14032566 intergenic "USP6NL,AL512631.1," "-," chr10~chr10 11639630 14032566 2 -+ 0.693147 2 0 2 2 8 TCGA-FX-A2QS-01A-11R-A21T-07 USP6NL~RP11-142M10.2 fusion "USP6NL,AL512631.1," "RP11-142M10.2," chr10~chr10 11639630 14045525 5 -+ 1.332179 3 1 2 3 4 TCGA-FX-A2QS-01A-11R-A21T-07 VAMP4~RP11-177F15.1 fusion "VAMP4," "RP11-177F15.1," chr1~chr1 171707489 238696749 8 -+ 1.906155 4 2 2 4 24 TCGA-FX-A2QS-01A-11R-A21T-07 ZBTB44~FRS2 fusion "ZBTB44," "FRS2," chr11~chr12 130184270 69955960 24 -+ 2.535025 24 1 23 24 12 TCGA-FX-A2QS-01A-11R-A21T-07 ZC3H18~Nchr1~166299820 intergenic "ZC3H18," "-," chr16~chr1 88636974 166299820 12 +- 1.632631 8 0 8 8 34 TCGA-FX-A2QS-01A-11R-A21T-07 ZNF146~ABCA9 fusion "ZNF146," "ABCA9," chr19~chr17 36706098 66992155 5 +- 1.332179 5 5 0 5 10 TCGA-FX-A2QS-01A-11R-A21T-07 ZNF146~ABCA9 fusion "ZNF146," "ABCA9," chr19~chr17 36709097 66992155 7 +- 1.747868 7 5 2 7 50 TCGA-FX-A2QS-01A-11R-A21T-07 ZNF383~TEX14 fusion "AC012309.4,ZNF383," "TEX14," chr19~chr17 37726976 56729363 3 +- 1.098612 2 0 2 2 10 TCGA-FX-A2QS-01A-11R-A21T-07 ZNF613~UGGT1 fusion "ZNF613," "UGGT1," chr19~chr2 52433149 128903377 9 ++ 1.581094 7 6 1 7 28 TCGA-FX-A2QS-01A-11R-A21T-07 ZNF616~Nchr19~22210963 intergenic "ZNF616," "-," chr19~chr19 52639880 22210963 4 -+ 1.386294 4 2 2 4 6 TCGA-FX-A2QS-01A-11R-A21T-07 ZNF616~Nchr19~22220683 intergenic "ZNF616," "-," chr19~chr19 52642985 22220683 2 -+ 0.693147 2 0 2 2 22 TCGA-FX-A2QS-01A-11R-A21T-07 ZNF665~RANBP3L fusion "ZNF665," "RANBP3L," chr19~chr5 53678698 36271413 9 -- 1.889159 9 2 7 9 54 TCGA-FX-A2QS-01A-11R-A21T-07 ZNF761~Nchr12~76729219 intergenic "ZNF761," "-," chr19~chr12 53950536 76729219 16 ++ 2.187322 3 0 3 3 4 TCGA-DX-A3M1-01A-11R-A22K-07 ABR~Nchr17~16907540 intergenic "ABR," "-," chr17~chr17 953290 16907540 4 -+ 1.039721 4 3 1 4 10 TCGA-DX-A3M1-01A-11R-A22K-07 AC010859.1~MATN2 fusion "AC010859.1," "MATN2," chr8~chr8 97797558 98943181 29 ++ 2.509842 29 22 7 29 102 TCGA-DX-A3M1-01A-11R-A22K-07 AKNA~Nchr9~128188175 intergenic "AKNA," "-," chr9~chr9 117136373 128188175 12 -- 1.676235 12 6 6 12 122 TCGA-DX-A3M1-01A-11R-A22K-07 AKNA~Nchr9~128188178 intergenic "AKNA," "-," chr9~chr9 117136373 128188178 16 -- 2.512659 16 9 7 16 124 TCGA-DX-A3M1-01A-11R-A22K-07 AP2B1~Nchr17~51814050 intergenic "AP2B1," "-," chr17~chr17 33977808 51814050 6 ++ 1.329661 6 4 2 6 40 TCGA-DX-A3M1-01A-11R-A22K-07 AP2B1~Nchr17~51831600 intergenic "AP2B1," "-," chr17~chr17 33977808 51831600 6 ++ 1.329661 6 3 3 6 6 TCGA-DX-A3M1-01A-11R-A22K-07 APC~CTD-2192A1.1 fusion "APC," "CTD-2192A1.1," chr5~chr5 112116600 111310072 15 ++ 2.211069 15 7 8 15 52 TCGA-DX-A3M1-01A-11R-A22K-07 ATAD5~Nchr11~101875992 intergenic "ATAD5," "-," chr17~chr11 29163066 101875992 9 ++ 1.464816 9 3 6 9 34 TCGA-DX-A3M1-01A-11R-A22K-07 ATRX~NchrX~51381116 intergenic "ATRX," "-," chrX~chrX 77041468 51381116 108 -+ 2.773191 101 22 79 101 588 TCGA-DX-A3M1-01A-11R-A22K-07 ATRX~NchrX~51381116 intergenic "ATRX," "-," chrX~chrX 77041331 51381116 16 -+ 1.684373 15 6 9 15 418 TCGA-DX-A3M1-01A-11R-A22K-07 C12orf63~Nchr12~97373311 intergenic "C12orf63," "-," chr12~chr12 97112300 97373311 15 ++ 2.118649 13 9 4 13 104 TCGA-DX-A3M1-01A-11R-A22K-07 C12orf63~Nchr12~97373311 intergenic "C12orf63," "-," chr12~chr12 97114343 97373311 132 ++ 2.889695 128 79 48 128 292 TCGA-DX-A3M1-01A-11R-A22K-07 C12orf63~Nchr12~97521014 intergenic "C12orf63," "-," chr12~chr12 97114343 97521014 39 ++ 1.972309 39 19 20 39 222 TCGA-DX-A3M1-01A-11R-A22K-07 C12orf63~Nchr12~97521014 intergenic "C12orf63," "-," chr12~chr12 97102581 97521014 25 ++ 2.268858 22 7 15 22 90 TCGA-DX-A3M1-01A-11R-A22K-07 C12orf63~Nchr12~97521014 intergenic "C12orf63," "-," chr12~chr12 97112300 97521014 4 ++ 1.386294 4 1 3 4 146 TCGA-DX-A3M1-01A-11R-A22K-07 C12orf63~Nchr12~97570119 intergenic "C12orf63," "-," chr12~chr12 97114343 97570119 5 ++ 1.332179 3 2 1 3 52 TCGA-DX-A3M1-01A-11R-A22K-07 C12orf63~RP11-541G9.1 fusion "C12orf63," "RP11-541G9.1," chr12~chr12 97112300 97578854 3 ++ 0.636514 3 0 3 3 44 TCGA-DX-A3M1-01A-11R-A22K-07 C12orf63~RP11-541G9.1 fusion "C12orf63," "RP11-541G9.1," chr12~chr12 97114343 97578967 3 ++ 1.098612 3 2 1 3 28 TCGA-DX-A3M1-01A-11R-A22K-07 C12orf63~SLC5A8 fusion "C12orf63," "SLC5A8," chr12~chr12 97112300 101561960 4 +- 0.562335 4 3 1 4 14 TCGA-DX-A3M1-01A-11R-A22K-07 C12orf63~SLC5A8 fusion "C12orf63," "SLC5A8," chr12~chr12 97114343 101588940 5 +- 0.950271 4 2 2 4 10 TCGA-DX-A3M1-01A-11R-A22K-07 CAPS2~Nchr12~91748198 intergenic "CAPS2," "-," chr12~chr12 75784102 91748198 11 -+ 1.263654 11 1 10 11 122 TCGA-DX-A3M1-01A-11R-A22K-07 CAPS2~Nchr12~91748198 intergenic "CAPS2," "-," chr12~chr12 75784618 91748198 40 -+ 2.316562 38 0 38 38 130 TCGA-DX-A3M1-01A-11R-A22K-07 CAPS2~Nchr12~91755987 intergenic "CAPS2," "-," chr12~chr12 75784102 91755987 3 -+ 0.636514 1 0 1 1 134 TCGA-DX-A3M1-01A-11R-A22K-07 CAPS2~Nchr12~91755987 intergenic "CAPS2," "-," chr12~chr12 75784618 91755987 29 -+ 2.335672 28 0 28 28 96 TCGA-DX-A3M1-01A-11R-A22K-07 CAPS2~Nchr12~91756115 intergenic "CAPS2," "-," chr12~chr12 75784618 91756115 13 -+ 1.303876 12 0 12 12 56 TCGA-DX-A3M1-01A-11R-A22K-07 CASC3~HNF1B fusion "CASC3," "HNF1B," chr17~chr17 38297860 36047395 20 +- 2.111631 19 15 4 19 76 TCGA-DX-A3M1-01A-11R-A22K-07 CCNYL1~Nchr2~200875619 intergenic "CCNYL1," "-," chr2~chr2 208576840 200875619 5 +- 1.05492 5 5 0 5 18 TCGA-DX-A3M1-01A-11R-A22K-07 CDC42EP4~Nchr17~57480706 intergenic "CDC42EP4," "-," chr17~chr17 71308032 57480706 27 -- 2.14009 22 20 2 22 188 TCGA-DX-A3M1-01A-11R-A22K-07 CDC42EP4~Nchr17~57480706 intergenic "CDC42EP4," "-," chr17~chr17 71307020 57480706 5 -- 0.950271 5 3 2 5 12 TCGA-DX-A3M1-01A-11R-A22K-07 CDK12~Nchr22~42770801 intergenic "CDK12," "-," chr17~chr22 37619370 42770801 14 +- 1.673118 14 9 5 14 94 TCGA-DX-A3M1-01A-11R-A22K-07 CDK12~Nchr22~42771033 intergenic "CDK12," "-," chr17~chr22 37619370 42771033 6 +- 1.011404 6 6 0 6 8 TCGA-DX-A3M1-01A-11R-A22K-07 CEP290~Nchr12~73871022 intergenic "CEP290," "-," chr12~chr12 88448117 73871022 30 -+ 1.989039 29 6 23 29 74 TCGA-DX-A3M1-01A-11R-A22K-07 CEP290~Nchr12~83067690 intergenic "CEP290," "-," chr12~chr12 88534983 83067690 5 -- 1.332179 4 4 0 4 4 TCGA-DX-A3M1-01A-11R-A22K-07 CEP290~VEZT fusion "CEP290," "VEZT," chr12~chr12 88490665 95645716 8 -+ 1.386294 1 1 0 1 20 TCGA-DX-A3M1-01A-11R-A22K-07 CEP290~VEZT fusion "CEP290," "VEZT," chr12~chr12 88487547 95645716 5 -+ 1.332179 4 4 0 4 16 TCGA-DX-A3M1-01A-11R-A22K-07 CEP290~VEZT fusion "CEP290," "VEZT," chr12~chr12 88486458 95645716 17 -+ 2.08443 12 7 5 12 38 TCGA-DX-A3M1-01A-11R-A22K-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266103 94055152 3 -+ 1.098612 1 0 1 1 6 TCGA-DX-A3M1-01A-11R-A22K-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266264 189856240 8 -+ 1.494175 5 5 0 5 4 TCGA-DX-A3M1-01A-11R-A22K-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268276 189863008 4 -+ 1.039721 3 1 2 3 6 TCGA-DX-A3M1-01A-11R-A22K-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94052430 48270175 9 +- 2.043192 6 1 5 6 8 TCGA-DX-A3M1-01A-11R-A22K-07 CPD~TMEM132E fusion "CPD," "TMEM132E," chr17~chr17 28712254 32953146 2 ++ 0.693147 2 1 1 2 14 TCGA-DX-A3M1-01A-11R-A22K-07 CPSF6~Nchr6~142066248 intergenic "CPSF6," "-," chr12~chr6 69645118 142066248 2 ++ 0.693147 2 1 1 2 2 TCGA-DX-A3M1-01A-11R-A22K-07 CPSF6~Nchr6~142076357 intergenic "CPSF6," "-," chr12~chr6 69645118 142076357 12 ++ 2.094729 11 6 5 11 48 TCGA-DX-A3M1-01A-11R-A22K-07 CRAT~TTLL11 fusion "CRAT," "TTLL11," chr9~chr9 131859529 124633027 41 -- 2.834576 42 20 20 42 122 TCGA-DX-A3M1-01A-11R-A22K-07 CRAT~TTLL11 fusion "CRAT," "TTLL11," chr9~chr9 131859529 124637877 25 -- 2.498003 25 8 17 25 58 TCGA-DX-A3M1-01A-11R-A22K-07 CRAT~TTLL11 fusion "CRAT," "TTLL11," chr9~chr9 131859529 124647673 28 -- 2.264772 27 16 11 27 156 TCGA-DX-A3M1-01A-11R-A22K-07 CRAT~TTLL11 fusion "CRAT," "TTLL11," chr9~chr9 131859529 124647854 325 -- 3.228233 320 137 177 320 492 TCGA-DX-A3M1-01A-11R-A22K-07 CRAT~TTLL11 fusion "CRAT," "TTLL11," chr9~chr9 131859529 124648881 5 -- 1.609438 5 2 3 5 150 TCGA-DX-A3M1-01A-11R-A22K-07 CRAT~TTLL11 fusion "CRAT," "TTLL11," chr9~chr9 131859529 124649859 27 -- 2.651193 27 9 17 27 420 TCGA-DX-A3M1-01A-11R-A22K-07 CRAT~TTLL11 fusion "CRAT," "TTLL11," chr9~chr9 131859529 124654607 15 -- 2.245952 13 4 9 13 158 TCGA-DX-A3M1-01A-11R-A22K-07 CSMD3~ADCY8 fusion "CSMD3," "ADCY8," chr8~chr8 114290821 131964244 4 -- 1.039721 4 2 2 4 6 TCGA-DX-A3M1-01A-11R-A22K-07 CTDSP2~AUH fusion "CTDSP2," "AUH," chr12~chr9 58240155 93976707 338 -- 3.148949 331 17 308 331 906 TCGA-DX-A3M1-01A-11R-A22K-07 CTDSP2~Nchr12~89408645 intergenic "CTDSP2," "-," chr12~chr12 58240155 89408645 13 -- 2.138397 13 1 12 13 140 TCGA-DX-A3M1-01A-11R-A22K-07 CTDSP2~Nchr12~89416693 intergenic "CTDSP2," "-," chr12~chr12 58240155 89416693 35 -- 2.574846 33 7 26 33 156 TCGA-DX-A3M1-01A-11R-A22K-07 CTDSP2~Nchr12~89445044 intergenic "CTDSP2," "-," chr12~chr12 58240155 89445044 120 -- 3.145553 116 12 104 116 390 TCGA-DX-A3M1-01A-11R-A22K-07 DCTN2~SYT1 fusion "DCTN2," "SYT1," chr12~chr12 57939811 79747282 4 -+ 1.039721 3 3 0 3 36 TCGA-DX-A3M1-01A-11R-A22K-07 DLG4~Nchr17~7437581 intergenic "DLG4," "-," chr17~chr17 7095212 7437581 23 -+ 2.811376 23 14 9 23 152 TCGA-DX-A3M1-01A-11R-A22K-07 DLG4~Nchr17~7437581 intergenic "DLG4," "-," chr17~chr17 7096264 7437581 36 -+ 2.546218 32 22 10 32 112 TCGA-DX-A3M1-01A-11R-A22K-07 DLG4~Nchr17~7437581 intergenic "DLG4," "-," chr17~chr17 7096802 7437581 7 -+ 0.9557 7 5 2 7 24 TCGA-DX-A3M1-01A-11R-A22K-07 DLG4~Nchr17~7441002 intergenic "DLG4," "-," chr17~chr17 7095212 7441002 2 -+ 0.693147 2 0 2 2 10 TCGA-DX-A3M1-01A-11R-A22K-07 DNAJC7~Nchr18~570665 intergenic "DNAJC7," "-," chr17~chr18 40146888 570665 7 -+ 1.747868 7 2 5 7 42 TCGA-DX-A3M1-01A-11R-A22K-07 EDA~TEX11 fusion "EDA," "TEX11," chrX~chrX 68836548 70053443 5 +- 0.950271 2 2 0 2 2 TCGA-DX-A3M1-01A-11R-A22K-07 EDA~TEX11 fusion "EDA," "TEX11," chrX~chrX 68836548 70093157 19 +- 2.305657 18 12 6 18 54 TCGA-DX-A3M1-01A-11R-A22K-07 ELL2~Nchr5~129610467 intergenic "ELL2," "-," chr5~chr5 95297279 129610467 9 -- 1.21489 8 1 7 8 20 TCGA-DX-A3M1-01A-11R-A22K-07 FAM129B~C16orf62 fusion "FAM129B," "C16orf62," chr9~chr16 130285958 19702675 16 -+ 1.923066 16 6 10 16 56 TCGA-DX-A3M1-01A-11R-A22K-07 FRS2~C12orf63 fusion "FRS2," "C12orf63," chr12~chr12 69867988 97093749 2 ++ 0.693147 2 0 2 2 8 TCGA-DX-A3M1-01A-11R-A22K-07 FRS2~C12orf63 fusion "FRS2," "C12orf63," chr12~chr12 69864310 97093749 74 ++ 3.024521 69 16 53 69 950 TCGA-DX-A3M1-01A-11R-A22K-07 FRS2~C12orf63 fusion "FRS2," "C12orf63," chr12~chr12 69864310 97098521 78 ++ 2.814925 76 45 31 76 550 TCGA-DX-A3M1-01A-11R-A22K-07 FRS2~HMGA2 fusion "FRS2," "HMGA2," chr12~chr12 69864310 66232299 63 ++ 2.822042 36 0 36 36 12 TCGA-DX-A3M1-01A-11R-A22K-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 267 -- 2.059156 267 265 2 267 462 TCGA-DX-A3M1-01A-11R-A22K-07 HMGA2~NR2C1 fusion "HMGA2," "NR2C1," chr12~chr12 66232349 95461163 8 +- 1.386294 7 0 7 7 32 TCGA-DX-A3M1-01A-11R-A22K-07 HMGA2~NR2C1 fusion "HMGA2," "NR2C1," chr12~chr12 66232349 95461167 101 +- 3.040118 44 0 44 44 46 TCGA-DX-A3M1-01A-11R-A22K-07 KIAA1377~SHANK2 fusion "KIAA1377," "SHANK2," chr11~chr11 101818873 70935842 4 +- 1.039721 1 0 1 1 14 TCGA-DX-A3M1-01A-11R-A22K-07 LAMA2~UQCRB fusion "LAMA2," "UQCRB," chr6~chr8 129691135 97245455 34 +- 2.45139 33 17 16 33 84 TCGA-DX-A3M1-01A-11R-A22K-07 LIN7A~RPSAP52 fusion "LIN7A," "RPSAP52," chr12~chr12 81283030 66152811 15 -- 1.898927 15 4 11 15 30 TCGA-DX-A3M1-01A-11R-A22K-07 MAP3K14~Nchr17~34288573 intergenic "MAP3K14," "-," chr17~chr17 43362179 34288573 16 -+ 2.220025 15 11 4 15 82 TCGA-DX-A3M1-01A-11R-A22K-07 MDM2~SYK fusion "MDM2," "SYK," chr12~chr9 69203072 93657810 615 ++ 3.309997 611 297 291 611 1652 TCGA-DX-A3M1-01A-11R-A22K-07 MDM2~SYK fusion "MDM2," "SYK," chr12~chr9 69203072 93658621 11 ++ 2.145842 11 8 3 11 60 TCGA-DX-A3M1-01A-11R-A22K-07 MMP16~Nchr8~111379964 intergenic "MMP16," "-," chr8~chr8 89198705 111379964 19 -- 2.083126 14 10 4 14 70 TCGA-DX-A3M1-01A-11R-A22K-07 MNT~P2RX1 fusion "MNT," "P2RX1," chr17~chr17 2289876 3816035 66 -- 2.815052 60 27 33 60 146 TCGA-DX-A3M1-01A-11R-A22K-07 MPRIP~Nchr17~8880075 intergenic "MPRIP," "-," chr17~chr17 17088208 8880075 6 ++ 1.011404 6 4 2 6 22 TCGA-DX-A3M1-01A-11R-A22K-07 MPRIP~Nchr17~8880075 intergenic "MPRIP," "-," chr17~chr17 17083402 8880075 2 ++ 0.693147 2 2 0 2 6 TCGA-DX-A3M1-01A-11R-A22K-07 MRPL42~NTN4 fusion "MRPL42," "NTN4," chr12~chr12 93861330 96131922 19 +- 2.180946 20 0 19 20 2 TCGA-DX-A3M1-01A-11R-A22K-07 MYH13~Nchr17~7199973 intergenic "MYH13," "-," chr17~chr17 10223829 7199973 12 +- 1.907284 10 3 7 10 40 TCGA-DX-A3M1-01A-11R-A22K-07 NCOA7~Nchr8~51763454 intergenic "NCOA7," "-," chr6~chr8 126136550 51763454 5 +- 1.332179 5 3 2 5 12 TCGA-DX-A3M1-01A-11R-A22K-07 NDUFA12~ST6GALNAC6 fusion "NDUFA12," "ST6GALNAC6," chr12~chr9 95387946 130658611 13 -- 2.098147 13 4 9 13 96 TCGA-DX-A3M1-01A-11R-A22K-07 NDUFB9~CSMD3 fusion "NDUFB9," "CSMD3," chr8~chr8 125555520 114327022 7 +- 1.351784 7 3 4 7 18 TCGA-DX-A3M1-01A-11R-A22K-07 NEDD1~Nchr12~58284096 intergenic "NEDD1," "-," chr12~chr12 97331171 58284096 18 ++ 2.245172 18 8 10 18 38 TCGA-DX-A3M1-01A-11R-A22K-07 NEDD1~Nchr12~88638155 intergenic "NEDD1," "-," chr12~chr12 97331171 88638155 11 +- 1.798652 8 5 3 8 36 TCGA-DX-A3M1-01A-11R-A22K-07 NEDD1~TMTC2 fusion "NEDD1," "TMTC2," chr12~chr12 97331171 83337729 2 ++ 0.693147 1 0 1 1 4 TCGA-DX-A3M1-01A-11R-A22K-07 NEDD1~TMTC2 fusion "NEDD1," "TMTC2," chr12~chr12 97331171 83358803 114 ++ 2.957261 114 44 69 114 310 TCGA-DX-A3M1-01A-11R-A22K-07 NF1~ACCN1 fusion "NF1," "ACCN1," chr17~chr17 29560231 31439085 4 +- 0.693147 4 2 2 4 18 TCGA-DX-A3M1-01A-11R-A22K-07 NF1~ACCN1 fusion "NF1," "ACCN1," chr17~chr17 29560231 31561582 24 +- 2.419501 21 8 13 21 54 TCGA-DX-A3M1-01A-11R-A22K-07 NF1~ACCN1 fusion "NF1," "ACCN1," chr17~chr17 29560231 31562137 3 +- 1.098612 3 2 1 3 12 TCGA-DX-A3M1-01A-11R-A22K-07 NFE2L1~Nchr17~48293189 intergenic "NFE2L1," "-," chr17~chr17 46134864 48293189 49 +- 2.627771 48 15 33 48 180 TCGA-DX-A3M1-01A-11R-A22K-07 NR2C1~Nchr12~66020465 intergenic "NR2C1," "-," chr12~chr12 95451507 66020465 18 -- 2.274241 9 2 7 9 24 TCGA-DX-A3M1-01A-11R-A22K-07 NTN4~NUP107 fusion "NTN4," "NUP107," chr12~chr12 96131644 69135593 83 -+ 2.704798 79 47 32 79 198 TCGA-DX-A3M1-01A-11R-A22K-07 NTN4~TRHDE fusion "NTN4," "TRHDE," chr12~chr12 96104219 72680461 8 -+ 1.494175 7 7 0 7 34 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr12~58238313~FAM129B intergenic "-," "FAM129B," chr12~chr9 58238313 130330753 3 +- 1.098612 3 1 2 3 4 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr12~66020392~TRPM3 intergenic "-," "TRPM3," chr12~chr9 66020392 73975924 16 -+ 2.187322 3 0 3 3 16 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr12~66244604~C12orf29 intergenic "-," "C12orf29," chr12~chr12 66244604 88442630 14 +- 1.809514 11 5 6 11 52 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr12~73871154~RP11-81H14.2 intergenic "-," "RP11-81H14.2," chr12~chr12 73871154 68825003 11 +- 1.641735 3 3 0 3 6 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr12~74335897~Nchr12~74269121 intergenic "-," "-," chr12~chr12 74335897 74269121 3 -+ 1.098612 1 0 1 1 6 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr12~74335897~SYT1 intergenic "-," "SYT1," chr12~chr12 74335897 79689849 5 -+ 0.673012 5 0 5 5 4 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr12~83036579~NR1H4 intergenic "-," "NR1H4," chr12~chr12 83036579 100913740 4 -- 1.386294 3 1 2 3 24 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr12~97580562~SLC5A8 intergenic "-," "SLC5A8," chr12~chr12 97580562 101588940 2 +- 0.693147 2 1 1 2 26 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr17~61176718~Nchr17~69181796 intergenic "-," "-," chr17~chr17 61176718 69181796 41 +- 2.823821 16 14 2 16 30 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr17~61228741~Nchr17~69181796 intergenic "-," "-," chr17~chr17 61228741 69181796 53 +- 2.819233 29 27 2 29 54 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr17~62400585~Nchr17~62400475 intergenic "-," "-," chr17~chr17 62400585 62400475 3 ++ 1.098612 3 3 0 3 4 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr17~66202379~HOOK3 intergenic "-," "HOOK3," chr17~chr8 66202379 42828432 4 ++ 0.693147 4 2 2 4 8 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr17~69000569~Nchr17~68775370 intergenic "-," "-," chr17~chr17 69000569 68775370 34 -- 2.60113 16 13 3 16 110 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr17~69181737~Nchr17~68775370 intergenic "-," "-," chr17~chr17 69181737 68775370 44 -- 2.472592 19 19 0 19 32 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 16 -+ 2.100679 13 9 4 13 188 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 2 ++ 0.693147 2 2 0 2 20 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr6~133514309~STX1A intergenic "-," "STX1A," chr6~chr7 133514309 73116657 3 -+ 0.636514 3 3 0 3 2 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr6~142078565~RIC8B intergenic "-," "RIC8B," chr6~chr12 142078565 107262493 5 +- 1.332179 5 4 1 5 22 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr7~128173784~Nchr17~68878619 intergenic "-," "-," chr7~chr17 128173784 68878619 8 ++ 1.213008 4 4 0 4 22 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr7~128173784~Nchr17~68893813 intergenic "-," "-," chr7~chr17 128173784 68893813 13 ++ 1.631345 12 10 2 12 30 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr7~56359094~LYZ intergenic "-," "LYZ," chr7~chr12 56359094 69743888 39 ++ 2.526548 39 0 39 39 462 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr8~118283908~AC060834.3 intergenic "-," "AC060834.3," chr8~chr7 118283908 9808862 6 -+ 1.242453 4 4 0 4 18 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr8~118283925~AC060834.3 intergenic "-," "AC060834.3," chr8~chr7 118283925 9808862 15 -+ 1.286873 3 3 0 3 12 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr8~118723577~Nchr8~119878956 intergenic "-," "-," chr8~chr8 118723577 119878956 3 -- 1.098612 3 1 2 3 12 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr9~89808398~RP11-247A12.2 intergenic "-," "RP11-247A12.2," chr9~chr9 89808398 131971148 6 ++ 1.56071 4 0 4 4 4 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr9~89808398~SLC41A2 intergenic "-," "SLC41A2," chr9~chr12 89808398 105263940 5 ++ 1.609438 1 0 1 1 18 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr9~89808398~TMC1 intergenic "-," "TMC1," chr9~chr9 89808398 75162501 17 +- 1.789022 15 15 0 15 36 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr9~89808398~TMC1 intergenic "-," "TMC1," chr9~chr9 89808398 75168194 14 +- 1.710493 5 3 2 5 20 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr9~89808398~TMC1 intergenic "-," "TMC1," chr9~chr9 89808398 75172741 51 +- 2.78964 42 31 11 42 108 TCGA-DX-A3M1-01A-11R-A22K-07 Nchr9~93975127~TSPAN8 intergenic "-," "TSPAN8," chr9~chr12 93975127 71551567 4 -- 1.386294 3 2 1 3 10 TCGA-DX-A3M1-01A-11R-A22K-07 NchrX~33742075~NchrX~33428291 intergenic "-," "-," chrX~chrX 33742075 33428291 2 -- 0.693147 2 0 2 2 4 TCGA-DX-A3M1-01A-11R-A22K-07 PDIA4~AC060834.3 fusion "PDIA4," "AC060834.3," chr7~chr7 148708938 9808862 215 -+ 3.235062 207 131 76 207 580 TCGA-DX-A3M1-01A-11R-A22K-07 PDIA4~Nchr8~118283991 intergenic "PDIA4," "-," chr7~chr8 148708938 118283991 21 -- 2.200516 4 2 1 4 8 TCGA-DX-A3M1-01A-11R-A22K-07 PSME3~Nchr17~32727183 intergenic "PSME3," "-," chr17~chr17 40986893 32727183 16 ++ 2.014036 12 9 3 12 46 TCGA-DX-A3M1-01A-11R-A22K-07 PSME3~Nchr17~32739154 intergenic "PSME3," "-," chr17~chr17 40986893 32739154 3 ++ 1.098612 3 1 2 3 12 TCGA-DX-A3M1-01A-11R-A22K-07 PTCH1~Nchr9~89595077 intergenic "PTCH1," "-," chr9~chr9 98238316 89595077 4 -+ 0.693147 4 2 2 4 58 TCGA-DX-A3M1-01A-11R-A22K-07 PTCH1~Nchr9~89596685 intergenic "PTCH1," "-," chr9~chr9 98238316 89596685 24 -+ 2.405342 22 13 9 22 62 TCGA-DX-A3M1-01A-11R-A22K-07 PTPRM~Nchr17~26536501 intergenic "PTPRM," "-," chr18~chr17 7926681 26536501 14 +- 1.611472 13 7 6 13 26 TCGA-DX-A3M1-01A-11R-A22K-07 RP11-203J24.9~NUP107 fusion "RP11-203J24.9," "NUP107," chr9~chr12 130647465 69135593 787 -+ 3.159145 980 468 282 980 2650 TCGA-DX-A3M1-01A-11R-A22K-07 RP11-486A14.2~C12orf63 fusion "RP11-486A14.2," "C12orf63," chr12~chr12 93721803 97268896 3 -+ 0.636514 3 0 3 3 2 TCGA-DX-A3M1-01A-11R-A22K-07 RP11-541G9.1~Nchr12~74336041 intergenic "RP11-541G9.1," "-," chr12~chr12 97579135 74336041 2 +- 0.693147 2 1 1 2 24 TCGA-DX-A3M1-01A-11R-A22K-07 RPS4X~NchrX~63154273 intergenic "RPS4X," "-," chrX~chrX 71492529 63154273 25 -- 2.331647 22 6 16 22 122 TCGA-DX-A3M1-01A-11R-A22K-07 RPS4X~NchrX~63154273 intergenic "RPS4X," "-," chrX~chrX 71492490 63154273 19 -- 2.506662 17 11 6 17 140 TCGA-DX-A3M1-01A-11R-A22K-07 SEPT9~Nchr18~4181431 intergenic "SEPT9," "-," chr17~chr18 75369634 4181431 14 ++ 2.106577 12 1 11 12 22 TCGA-DX-A3M1-01A-11R-A22K-07 SKA2~HEATR6 fusion "SKA2," "HEATR6," chr17~chr17 57232317 58137457 5 -- 1.332179 5 2 3 5 32 TCGA-DX-A3M1-01A-11R-A22K-07 SKA2~HEATR6 fusion "SKA2," "HEATR6," chr17~chr17 57232492 58137457 15 -- 1.783854 15 0 15 15 14 TCGA-DX-A3M1-01A-11R-A22K-07 SPAG9~Nchr17~41923632 intergenic "SPAG9," "-," chr17~chr17 49097520 41923632 5 -+ 1.332179 5 2 3 5 2 TCGA-DX-A3M1-01A-11R-A22K-07 ST6GALNAC6~NUP107 fusion "ST6GALNAC6," "NUP107," chr9~chr12 130649763 69135593 6 -+ 1.56071 6 2 4 6 32 TCGA-DX-A3M1-01A-11R-A22K-07 ST6GALNAC6~NUP107 fusion "ST6GALNAC6," "NUP107," chr9~chr12 130652916 69135593 4 -+ 1.386294 4 1 3 4 18 TCGA-DX-A3M1-01A-11R-A22K-07 ST6GALNAC6~NUP107 fusion "ST6GALNAC6," "NUP107," chr9~chr12 130656791 69135593 2 -+ 0.693147 2 1 1 2 46 TCGA-DX-A3M1-01A-11R-A22K-07 ST6GALNAC6~PAWR fusion "ST6GALNAC6," "PAWR," chr9~chr12 130656791 79990438 4 -- 1.039721 4 1 3 4 38 TCGA-DX-A3M1-01A-11R-A22K-07 STAT5B~ODZ4 fusion "STAT5B," "ODZ4," chr17~chr11 40368032 78926954 7 -- 1.277034 7 4 3 7 30 TCGA-DX-A3M1-01A-11R-A22K-07 SYNRG~ADAP2 fusion "SYNRG," "ADAP2," chr17~chr17 35921297 29248722 3 -+ 0.636514 3 1 2 3 4 TCGA-DX-A3M1-01A-11R-A22K-07 TANC2~Nchr17~69181796 intergenic "TANC2," "-," chr17~chr17 61176607 69181796 7 +- 1.747868 3 3 0 3 4 TCGA-DX-A3M1-01A-11R-A22K-07 TLN1~Nchr18~7133740 intergenic "TLN1," "-," chr9~chr18 35732072 7133740 7 -+ 1.747868 6 6 0 6 2 TCGA-DX-A3M1-01A-11R-A22K-07 TLN1~Nchr18~7152628 intergenic "TLN1," "-," chr9~chr18 35732072 7152628 6 -+ 1.011404 6 6 0 6 2 TCGA-DX-A3M1-01A-11R-A22K-07 TM9SF3~Nchr10~67009188 intergenic "TM9SF3," "-," chr10~chr10 98336391 67009188 4 -- 0.562335 4 4 0 4 14 TCGA-DX-A3M1-01A-11R-A22K-07 TMPO~Nchr9~89808270 intergenic "TMPO," "-," chr12~chr9 98909924 89808270 39 ++ 2.905913 20 16 4 20 78 TCGA-DX-A3M1-01A-11R-A22K-07 TMTC2~Nchr12~103063727 intergenic "TMTC2," "-," chr12~chr12 83455610 103063727 12 +- 1.979205 12 3 9 12 32 TCGA-DX-A3M1-01A-11R-A22K-07 TMTC2~Nchr12~84604129 intergenic "TMTC2," "-," chr12~chr12 83251359 84604129 33 +- 2.212727 32 20 12 32 222 TCGA-DX-A3M1-01A-11R-A22K-07 TMTC3~Nchr12~103943276 intergenic "TMTC3," "-," chr12~chr12 88536264 103943276 4 ++ 1.039721 4 3 1 4 38 TCGA-DX-A3M1-01A-11R-A22K-07 TMTC3~Nchr12~103944240 intergenic "TMTC3," "-," chr12~chr12 88536264 103944240 11 ++ 2.019815 8 5 3 8 28 TCGA-DX-A3M1-01A-11R-A22K-07 TMTC3~Nchr12~98730756 intergenic "TMTC3," "-," chr12~chr12 88536264 98730756 2 ++ 1.098612 3 1 1 3 10 TCGA-DX-A3M1-01A-11R-A22K-07 TMTC3~Nchr12~98732231 intergenic "TMTC3," "-," chr12~chr12 88536264 98732231 6 ++ 1.329661 5 5 0 5 536 TCGA-DX-A3M1-01A-11R-A22K-07 TMTC3~Nchr12~98734834 intergenic "TMTC3," "-," chr12~chr12 88536264 98734834 91 ++ 2.875616 91 20 69 91 526 TCGA-DX-A3M1-01A-11R-A22K-07 TMTC3~Nchr12~98734834 intergenic "TMTC3," "-," chr12~chr12 88536173 98734834 5 ++ 0.673012 5 0 5 5 138 TCGA-DX-A3M1-01A-11R-A22K-07 TMTC3~SLC35E3 fusion "TMTC3," "SLC35E3," chr12~chr12 88536264 69152937 4 ++ 1.039721 4 3 1 4 24 TCGA-DX-A3M1-01A-11R-A22K-07 TMTC3~SLC6A15 fusion "TMTC3," "SLC6A15," chr12~chr12 88536264 85286087 2 +- 0.693147 2 0 2 2 12 TCGA-DX-A3M1-01A-11R-A22K-07 TNFRSF13B~MPRIP fusion "TNFRSF13B," "MPRIP," chr17~chr17 16842970 16960950 4 -+ 1.039721 4 3 1 4 14 TCGA-DX-A3M1-01A-11R-A22K-07 TNFRSF13B~MPRIP fusion "TNFRSF13B," "MPRIP," chr17~chr17 16852052 16960950 9 -+ 1.14906 8 1 7 8 14 TCGA-DX-A3M1-01A-11R-A22K-07 TNFRSF13B~MPRIP fusion "TNFRSF13B," "MPRIP," chr17~chr17 16852052 16979024 4 -+ 0.693147 2 0 2 2 12 TCGA-DX-A3M1-01A-11R-A22K-07 TRPA1~Nchr8~77872244 intergenic "TRPA1," "-," chr8~chr8 72983946 77872244 3 -+ 0.636514 3 0 3 3 2 TCGA-DX-A3M1-01A-11R-A22K-07 TSFM~TPH2 fusion "TSFM," "TPH2," chr12~chr12 58186856 72574568 2 ++ 0.693147 2 1 1 2 4 TCGA-DX-A3M1-01A-11R-A22K-07 TTC28~TEF fusion "TTC28," "TEF," chr22~chr22 28492178 41794843 11 -+ 1.84622 10 4 6 10 38 TCGA-DX-A3M1-01A-11R-A22K-07 TTLL11~C12orf42 fusion "TTLL11," "C12orf42," chr9~chr12 124622616 103657149 3 -- 0.636514 3 1 2 3 4 TCGA-DX-A3M1-01A-11R-A22K-07 UQCRB~Nchr8~81489336 intergenic "UQCRB," "-," chr8~chr8 97244002 81489336 9 -+ 1.676988 8 2 6 8 24 TCGA-DX-A3M1-01A-11R-A22K-07 VEZT~C12orf29 fusion "VEZT," "C12orf29," chr12~chr12 95645847 88433925 17 ++ 1.870569 12 8 4 12 68 TCGA-DX-A3M1-01A-11R-A22K-07 VEZT~C12orf29 fusion "VEZT," "C12orf29," chr12~chr12 95645847 88436602 3 ++ 1.098612 3 3 0 3 60 TCGA-DX-A3M1-01A-11R-A22K-07 VPS53~TXNDC17 fusion "VPS53," "TXNDC17," chr17~chr17 559078 6545073 7 -+ 1.747868 7 3 4 7 16 TCGA-DX-A3M1-01A-11R-A22K-07 WWP1~UTP23 fusion "WWP1," "UTP23," chr8~chr8 87443972 117783695 6 ++ 1.329661 5 4 1 5 16 TCGA-DX-A3M1-01A-11R-A22K-07 WWP1~UTP23 fusion "WWP1," "UTP23," chr8~chr8 87443972 117798742 3 ++ 0.636514 3 0 3 3 20 TCGA-DX-A3M1-01A-11R-A22K-07 WWP1~UTP23 fusion "WWP1," "UTP23," chr8~chr8 87443972 117861127 3 ++ 0.636514 3 2 1 3 2 TCGA-DX-A3M1-01A-11R-A22K-07 XPOT~LYZ fusion "XPOT," "LYZ," chr12~chr12 64838911 69743878 5 ++ 1.05492 3 0 3 3 478 TCGA-DX-A3M1-01A-11R-A22K-07 XPOT~LYZ fusion "XPOT," "LYZ," chr12~chr12 64838911 69743888 144 ++ 3.096956 121 59 62 121 524 TCGA-DX-A3M1-01A-11R-A22K-07 XPOT~Nchr12~69726031 intergenic "XPOT," "-," chr12~chr12 64838911 69726031 3 ++ 0.636514 3 2 1 3 8 TCGA-DX-A3M1-01A-11R-A22K-07 XPOT~Nchr12~69726681 intergenic "XPOT," "-," chr12~chr12 64838911 69726681 19 ++ 2.028047 13 3 10 13 540 TCGA-DX-A3M1-01A-11R-A22K-07 XPOT~Nchr12~69727570 intergenic "XPOT," "-," chr12~chr12 64838911 69727570 5 ++ 1.332179 4 1 3 4 566 TCGA-DX-A3M1-01A-11R-A22K-07 XPOT~Nchr12~69727987 intergenic "XPOT," "-," chr12~chr12 64838911 69727987 5 ++ 1.609438 4 1 3 4 218 TCGA-DX-A3M1-01A-11R-A22K-07 YEATS4~C12orf63 fusion "YEATS4," "C12orf63," chr12~chr12 69753803 97093749 4 ++ 1.039721 4 1 3 4 30 TCGA-DX-A3M1-01A-11R-A22K-07 YIPF6~Nchr13~30482689 intergenic "YIPF6," "-," chrX~chr13 67742759 30482689 78 ++ 2.97721 79 40 37 79 442 TCGA-DX-A3M1-01A-11R-A22K-07 YIPF6~Nchr13~30482731 intergenic "YIPF6," "-," chrX~chr13 67742759 30482731 7 ++ 1.94591 7 3 4 7 296 TCGA-DX-A3M1-01A-11R-A22K-07 ZFC3H1~Nchr12~95225134 intergenic "ZFC3H1," "-," chr12~chr12 72003960 95225134 3 -+ 0.636514 2 0 2 2 12 TCGA-DX-A3M1-01A-11R-A22K-07 ZFPM2~Nchr8~111379964 intergenic "ZFPM2," "-," chr8~chr8 106347066 111379964 5 -- 1.332179 3 0 3 3 14 TCGA-DX-A3M1-01A-11R-A22K-07 ZHX2~GPRC6A fusion "ZHX2," "GPRC6A," chr8~chr6 123794185 117150119 12 +- 2.138333 11 8 3 11 20 TCGA-DX-A3M1-01A-11R-A22K-07 ZNF292~MAP3K4 fusion "ZNF292," "MAP3K4," chr6~chr6 87865477 161491640 6 ++ 0.636514 6 2 4 6 8 TCGA-DX-A3M1-01A-11R-A22K-07 ZNF704~Nchr8~129750228 intergenic "ZNF704," "-," chr8~chr8 81733609 129750228 18 -+ 2.476221 16 7 9 16 86 TCGA-DX-A3M1-01A-11R-A22K-07 ZNF704~Nchr8~129789401 intergenic "ZNF704," "-," chr8~chr8 81733609 129789401 6 -+ 1.791759 5 3 2 5 24 TCGA-DX-A3M1-01A-11R-A22K-07 ZNF704~Nchr8~129800886 intergenic "ZNF704," "-," chr8~chr8 81733609 129800886 6 -+ 1.329661 6 5 1 6 4 TCGA-DX-A3M2-01A-21R-A22K-07 CRAMP1L~TMEM204 fusion "CRAMP1L," "TMEM204," chr16~chr16 1676167 1604783 33 ++ 1.906147 32 25 7 32 20 TCGA-DX-A3M2-01A-21R-A22K-07 CTDNEP1~Nchr17~8121566 intergenic "CTDNEP1," "-," chr17~chr17 7154514 8121566 48 -+ 2.224743 44 10 34 44 238 TCGA-DX-A3M2-01A-21R-A22K-07 ERC1~Nchr12~8729946 intergenic "ERC1," "-," chr12~chr12 1553916 8729946 19 +- 1.279008 18 7 11 18 20 TCGA-DX-A3M2-01A-21R-A22K-07 ERC1~RP11-561P12.5 fusion "ERC1," "RP11-561P12.5," chr12~chr12 1553916 8720156 21 +- 1.505432 21 16 5 21 42 TCGA-DX-A3M2-01A-21R-A22K-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 407 -- 2.487712 406 404 2 406 568 TCGA-DX-A3M2-01A-21R-A22K-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32487941 32548633 206 -- 2.399196 32 12 20 32 40 TCGA-DX-A3M2-01A-21R-A22K-07 LRRC16A~Nchr6~14533192 intergenic "LRRC16A," "-," chr6~chr6 25594755 14533192 5 ++ 0.500402 5 4 1 5 46 TCGA-DX-A3M2-01A-21R-A22K-07 MAD1L1~AC147651.1 fusion "MAD1L1," "AC147651.1," chr7~chr7 2054137 535643 13 -- 1.737983 13 8 5 13 22 TCGA-DX-A3M2-01A-21R-A22K-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 65 -+ 1.891373 23 0 23 23 68 TCGA-DX-A3M2-01A-21R-A22K-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 109 -+ 2.692474 105 39 64 105 702 TCGA-DX-A3M2-01A-21R-A22K-07 Nchr1~51623362~CFL1 intergenic "-," "CFL1," chr1~chr11 51623362 65622526 6 ++ 1.329661 4 0 4 4 2 TCGA-DX-A3M2-01A-21R-A22K-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 4 ++ 0.562335 4 4 0 4 16 TCGA-DX-A3M2-01A-21R-A22K-07 PDLIM5~Nchr1~142816004 intergenic "PDLIM5," "-," chr4~chr1 95445026 142816004 14 +- 1.512451 1 0 1 1 2 TCGA-DX-A3M2-01A-21R-A22K-07 SLC39A11~RP1-80N2.2 fusion "SLC39A11," "RP1-80N2.2," chr17~chr6 70732789 6706603 15 -+ 1.586785 12 0 12 12 12 TCGA-DX-A3M2-01A-21R-A22K-07 TPSAB1~Nchr16~1278539 intergenic "TPSAB1," "-," chr16~chr16 1292317 1278539 5 ++ 1.05492 4 2 2 4 2 TCGA-DX-A3U5-01A-11R-A22K-07 AC010859.1~ANGPT1 fusion "AC010859.1," "ANGPT1," chr8~chr8 97978274 108509734 5 +- 0.950271 4 1 3 4 12 TCGA-DX-A3U5-01A-11R-A22K-07 ACACB~Nchr12~78661299 intergenic "ACACB," "-," chr12~chr12 109625967 78661299 26 +- 1.957319 27 11 15 27 110 TCGA-DX-A3U5-01A-11R-A22K-07 ATP2A2~Nchr4~100222108 intergenic "ATP2A2," "-," chr12~chr4 110734542 100222108 3 ++ 1.098612 2 2 0 2 24 TCGA-DX-A3U5-01A-11R-A22K-07 ATP2B1~DCDC2 fusion "ATP2B1," "DCDC2," chr12~chr6 90102373 24302272 4 -- 1.039721 4 0 4 4 26 TCGA-DX-A3U5-01A-11R-A22K-07 ATP2B1~DCDC2 fusion "ATP2B1," "DCDC2," chr12~chr6 90102996 24302272 4 -- 0.562335 4 0 4 4 22 TCGA-DX-A3U5-01A-11R-A22K-07 BBS9~Nchr7~33900207 intergenic "BBS9," "-," chr7~chr7 33644587 33900207 12 ++ 1.42413 8 4 4 8 26 TCGA-DX-A3U5-01A-11R-A22K-07 BTBD11~CMKLR1 fusion "BTBD11," "CMKLR1," chr12~chr12 107975081 108687441 19 +- 2.527519 19 1 17 19 40 TCGA-DX-A3U5-01A-11R-A22K-07 BTBD2~KIAA1109 fusion "BTBD2," "KIAA1109," chr19~chr4 1990003 123107191 18 -+ 2.370135 17 8 9 17 36 TCGA-DX-A3U5-01A-11R-A22K-07 C12orf51~LTA4H fusion "C12orf51," "LTA4H," chr12~chr12 112819756 96400187 25 -- 2.511595 13 10 3 13 52 TCGA-DX-A3U5-01A-11R-A22K-07 C12orf51~LTA4H fusion "C12orf51," "LTA4H," chr12~chr12 112798184 96400187 16 -- 1.85766 14 10 4 14 92 TCGA-DX-A3U5-01A-11R-A22K-07 C15orf57~CBX3 fusion "C15orf57," "CBX3," chr15~chr7 40854971 26241389 5 -+ 0.950271 5 3 2 5 14 TCGA-DX-A3U5-01A-11R-A22K-07 C5orf30~Nchr5~119379304 intergenic "C5orf30," "-," chr5~chr5 102601698 119379304 8 +- 1.559581 6 1 5 6 16 TCGA-DX-A3U5-01A-11R-A22K-07 C5orf30~Nchr5~119414770 intergenic "C5orf30," "-," chr5~chr5 102601698 119414770 2 +- 0.693147 2 1 1 2 18 TCGA-DX-A3U5-01A-11R-A22K-07 C5orf30~Nchr8~78566668 intergenic "C5orf30," "-," chr5~chr8 102601698 78566668 2 ++ 0.693147 2 0 2 2 4 TCGA-DX-A3U5-01A-11R-A22K-07 C5orf30~Nchr8~78574046 intergenic "C5orf30," "-," chr5~chr8 102601698 78574046 2 ++ 0.693147 2 1 1 2 18 TCGA-DX-A3U5-01A-11R-A22K-07 C5orf30~RP11-38H17.1 fusion "C5orf30," "RP11-38H17.1," chr5~chr8 102601698 78501294 18 ++ 2.399204 14 10 4 14 74 TCGA-DX-A3U5-01A-11R-A22K-07 CNOT2~Nchr12~89015224 intergenic "CNOT2,CNOT2,CNOT2," "-," chr12~chr12 70637260 89015224 20 +- 2.319575 19 0 19 19 4 TCGA-DX-A3U5-01A-11R-A22K-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48271710 189870968 2 -+ 0.693147 2 1 1 2 2 TCGA-DX-A3U5-01A-11R-A22K-07 CRADD~Nchr12~112266263 intergenic "CRADD," "-," chr12~chr12 94072848 112266263 8 +- 1.667462 8 6 2 8 12 TCGA-DX-A3U5-01A-11R-A22K-07 CSNK1G2~Nchr4~120621423 intergenic "CSNK1G2," "-," chr19~chr4 1969958 120621423 5 +- 1.05492 5 3 2 5 16 TCGA-DX-A3U5-01A-11R-A22K-07 CSNK1G2~Nchr4~120698712 intergenic "CSNK1G2," "-," chr19~chr4 1969958 120698712 14 +- 1.908535 14 6 8 14 140 TCGA-DX-A3U5-01A-11R-A22K-07 CSNK1G2~Nchr4~120698782 intergenic "CSNK1G2," "-," chr19~chr4 1969958 120698782 37 +- 2.744209 36 23 13 36 232 TCGA-DX-A3U5-01A-11R-A22K-07 CSNK1G2~PDE5A fusion "CSNK1G2," "PDE5A," chr19~chr4 1969958 120528452 7 +- 1.549826 7 2 5 7 24 TCGA-DX-A3U5-01A-11R-A22K-07 CSRP2~CTD-2021H9.1 fusion "CSRP2," "CTD-2021H9.1," chr12~chr12 77272718 71425486 6 -- 1.56071 3 3 0 3 8 TCGA-DX-A3U5-01A-11R-A22K-07 CSRP2~CTD-2021H9.2 fusion "CSRP2," "CTD-2021H9.2," chr12~chr12 77272718 71440521 178 -- 2.958517 30 28 1 30 58 TCGA-DX-A3U5-01A-11R-A22K-07 CSRP2~CTD-2021H9.2 fusion "CSRP2," "CTD-2021H9.2," chr12~chr12 77272743 71440521 28 -- 2.434463 3 3 0 3 16 TCGA-DX-A3U5-01A-11R-A22K-07 CSRP2~CTD-2021H9.3 fusion "CSRP2," "CTD-2021H9.3," chr12~chr12 77272718 71441459 626 -- 3.045137 598 591 7 598 1676 TCGA-DX-A3U5-01A-11R-A22K-07 CSRP2~CTD-2021H9.3 fusion "CSRP2," "CTD-2021H9.3," chr12~chr12 77272743 71441459 113 -- 2.815557 108 108 0 108 236 TCGA-DX-A3U5-01A-11R-A22K-07 CSRP2~Nchr12~71377621 intergenic "CSRP2," "-," chr12~chr12 77272718 71377621 3 -- 0.636514 3 3 0 3 36 TCGA-DX-A3U5-01A-11R-A22K-07 CSRP2~Nchr12~71426177 intergenic "CSRP2," "-," chr12~chr12 77272743 71426177 2 -- 0.693147 2 2 0 2 8 TCGA-DX-A3U5-01A-11R-A22K-07 CSRP2~Nchr12~71426177 intergenic "CSRP2," "-," chr12~chr12 77272718 71426177 2 -- 0.636514 3 2 0 3 28 TCGA-DX-A3U5-01A-11R-A22K-07 CSRP2~PTPRR fusion "CSRP2," "PTPRR," chr12~chr12 77272718 71314347 11 -- 1.972247 9 9 0 9 42 TCGA-DX-A3U5-01A-11R-A22K-07 CSRP2~SNRPF fusion "CSRP2," "SNRPF," chr12~chr12 77272743 96254946 4 -+ 1.386294 3 0 3 3 22 TCGA-DX-A3U5-01A-11R-A22K-07 CSRP2~SNRPF fusion "CSRP2," "SNRPF," chr12~chr12 77272718 96254946 17 -+ 2.15006 13 0 13 13 172 TCGA-DX-A3U5-01A-11R-A22K-07 CTBP1~Nchr4~25065929 intergenic "CTBP1," "-," chr4~chr4 1231971 25065929 7 -+ 1.732868 7 2 4 7 148 TCGA-DX-A3U5-01A-11R-A22K-07 CTBP1~Nchr4~25066411 intergenic "CTBP1," "-," chr4~chr4 1231971 25066411 101 -+ 2.984003 93 81 12 93 322 TCGA-DX-A3U5-01A-11R-A22K-07 CTBP1~Nchr4~25093951 intergenic "CTBP1," "-," chr4~chr4 1231971 25093951 12 -+ 1.704551 12 10 2 12 16 TCGA-DX-A3U5-01A-11R-A22K-07 CTBP1~Nchr4~25100637 intergenic "CTBP1," "-," chr4~chr4 1231971 25100637 20 -+ 2.082007 19 18 1 19 52 TCGA-DX-A3U5-01A-11R-A22K-07 CTD-2021H9.2~SNRPF fusion "CTD-2021H9.2," "SNRPF," chr12~chr12 71440458 96254946 79 -+ 2.757815 35 1 34 35 78 TCGA-DX-A3U5-01A-11R-A22K-07 DCDC2~Nchr9~25622101 intergenic "DCDC2," "-," chr6~chr9 24289080 25622101 13 -- 2.204785 10 5 5 10 38 TCGA-DX-A3U5-01A-11R-A22K-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 2 +- 0.693147 2 1 1 2 26 TCGA-DX-A3U5-01A-11R-A22K-07 EIF4G3~SPSB1 fusion "EIF4G3," "SPSB1," chr1~chr1 21377359 9429332 88 -+ 2.317117 87 71 16 87 550 TCGA-DX-A3U5-01A-11R-A22K-07 EIF4G3~SPSB1 fusion "EIF4G3," "SPSB1," chr1~chr1 21377359 9429368 25 -+ 2.276912 25 13 12 25 432 TCGA-DX-A3U5-01A-11R-A22K-07 EP400~Nchr12~75058036 intergenic "EP400," "-," chr12~chr12 132446499 75058036 9 +- 1.735126 9 2 7 9 204 TCGA-DX-A3U5-01A-11R-A22K-07 EP400~Nchr12~75059926 intergenic "EP400," "-," chr12~chr12 132448187 75059926 16 +- 2.166085 16 5 11 16 274 TCGA-DX-A3U5-01A-11R-A22K-07 EP400~Nchr12~75059926 intergenic "EP400," "-," chr12~chr12 132446499 75059926 97 +- 2.605207 95 46 49 95 276 TCGA-DX-A3U5-01A-11R-A22K-07 EP400~Nchr12~75071058 intergenic "EP400," "-," chr12~chr12 132446499 75071058 11 +- 1.168518 11 9 2 11 196 TCGA-DX-A3U5-01A-11R-A22K-07 FRS2~Nchr12~83685575 intergenic "FRS2," "-," chr12~chr12 69925836 83685575 11 ++ 1.972247 1 1 0 1 14 TCGA-DX-A3U5-01A-11R-A22K-07 FRS2~Nchr12~83704239 intergenic "FRS2," "-," chr12~chr12 69931763 83704239 5 ++ 1.332179 5 4 1 5 18 TCGA-DX-A3U5-01A-11R-A22K-07 FRS2~Nchr12~83704250 intergenic "FRS2," "-," chr12~chr12 69925836 83704250 4 ++ 0.693147 2 2 0 2 8 TCGA-DX-A3U5-01A-11R-A22K-07 FRS2~Nchr12~83704250 intergenic "FRS2," "-," chr12~chr12 69931763 83704250 4 ++ 1.039721 2 2 0 2 14 TCGA-DX-A3U5-01A-11R-A22K-07 FRS2~Nchr12~83763174 intergenic "FRS2," "-," chr12~chr12 69925836 83763174 18 ++ 1.952138 15 3 12 15 78 TCGA-DX-A3U5-01A-11R-A22K-07 FRS2~Nchr12~83763174 intergenic "FRS2," "-," chr12~chr12 69931763 83763174 21 ++ 2.359466 19 9 10 19 118 TCGA-DX-A3U5-01A-11R-A22K-07 FRS2~Nchr12~83770953 intergenic "FRS2," "-," chr12~chr12 69925836 83770953 54 ++ 2.649149 34 10 24 34 292 TCGA-DX-A3U5-01A-11R-A22K-07 FRS2~Nchr12~83770953 intergenic "FRS2," "-," chr12~chr12 69931763 83770953 16 ++ 1.927392 14 2 12 14 352 TCGA-DX-A3U5-01A-11R-A22K-07 FRS2~Nchr12~83841252 intergenic "FRS2," "-," chr12~chr12 69925836 83841252 15 ++ 1.656551 4 2 2 4 40 TCGA-DX-A3U5-01A-11R-A22K-07 FRS2~Nchr12~83846822 intergenic "FRS2," "-," chr12~chr12 69925836 83846822 4 ++ 1.386294 2 0 2 2 78 TCGA-DX-A3U5-01A-11R-A22K-07 FRS2~Nchr12~83851572 intergenic "FRS2," "-," chr12~chr12 69925836 83851572 3 ++ 0.636514 1 0 1 1 40 TCGA-DX-A3U5-01A-11R-A22K-07 FRS2~Nchr12~83885272 intergenic "FRS2," "-," chr12~chr12 69931763 83885272 5 ++ 1.332179 3 3 0 3 12 TCGA-DX-A3U5-01A-11R-A22K-07 FRS2~Nchr12~89565428 intergenic "FRS2," "-," chr12~chr12 69925836 89565428 2 ++ 0.693147 2 1 1 2 12 TCGA-DX-A3U5-01A-11R-A22K-07 FRS2~Nchr12~89569342 intergenic "FRS2," "-," chr12~chr12 69931763 89569342 3 ++ 1.098612 2 1 1 2 10 TCGA-DX-A3U5-01A-11R-A22K-07 FRS2~Nchr12~89616039 intergenic "FRS2," "-," chr12~chr12 69925836 89616039 88 ++ 2.656118 59 18 38 59 442 TCGA-DX-A3U5-01A-11R-A22K-07 FRS2~Nchr12~89616039 intergenic "FRS2," "-," chr12~chr12 69931763 89616039 3 ++ 0.636514 1 0 1 1 396 TCGA-DX-A3U5-01A-11R-A22K-07 FRS2~Nchr6~148910703 intergenic "FRS2," "-," chr12~chr6 69864310 148910703 16 ++ 2.252728 16 8 8 16 88 TCGA-DX-A3U5-01A-11R-A22K-07 FRS2~Nchr6~148924240 intergenic "FRS2," "-," chr12~chr6 69864310 148924240 4 ++ 1.039721 2 1 1 2 1042 TCGA-DX-A3U5-01A-11R-A22K-07 FRS2~Nchr6~148961306 intergenic "FRS2," "-," chr12~chr6 69867988 148961306 4 ++ 1.039721 3 0 3 3 2 TCGA-DX-A3U5-01A-11R-A22K-07 FRS2~Nchr6~148961306 intergenic "FRS2," "-," chr12~chr6 69864310 148961306 187 ++ 2.474391 150 51 99 150 1368 TCGA-DX-A3U5-01A-11R-A22K-07 FRS2~SBF2 fusion "FRS2," "SBF2," chr12~chr11 69931763 9817504 16 +- 2.339372 14 8 6 14 204 TCGA-DX-A3U5-01A-11R-A22K-07 FRS2~SBF2 fusion "FRS2," "SBF2," chr12~chr11 69934554 9817504 3 +- 0.636514 3 0 3 3 204 TCGA-DX-A3U5-01A-11R-A22K-07 FRS2~SBF2 fusion "FRS2," "SBF2," chr12~chr11 69925836 9817504 27 +- 2.026883 17 7 9 17 140 TCGA-DX-A3U5-01A-11R-A22K-07 GNL1~REPS1 fusion "GNL1," "REPS1," chr6~chr6 30520244 139242261 10 -- 1.557113 9 4 5 9 40 TCGA-DX-A3U5-01A-11R-A22K-07 GRM1~CNOT2 fusion "GRM1," "CNOT2," chr6~chr12 146720835 70713078 8 ++ 1.494175 8 4 4 8 4 TCGA-DX-A3U5-01A-11R-A22K-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 496 -- 2.591745 496 496 0 496 228 TCGA-DX-A3U5-01A-11R-A22K-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 359 -- 2.462064 194 30 164 194 6 TCGA-DX-A3U5-01A-11R-A22K-07 KIAA1109~NFKB1 fusion "KIAA1109," "NFKB1," chr4~chr4 123075267 103446669 8 ++ 1.559581 8 7 1 8 18 TCGA-DX-A3U5-01A-11R-A22K-07 LTA4H~BTBD11 fusion "LTA4H," "BTBD11," chr12~chr12 96396738 107914264 59 -+ 2.785755 42 17 25 42 172 TCGA-DX-A3U5-01A-11R-A22K-07 LTA4H~Nchr17~50882797 intergenic "LTA4H," "-," chr12~chr17 96412541 50882797 48 -- 2.750847 27 27 0 27 48 TCGA-DX-A3U5-01A-11R-A22K-07 MBD3~Nchr4~83189756 intergenic "MBD3," "-," chr19~chr4 1591956 83189756 12 -+ 1.86368 12 3 9 12 8 TCGA-DX-A3U5-01A-11R-A22K-07 MDM1~PDZRN4 fusion "MDM1," "PDZRN4," chr12~chr12 68707223 41900258 3 -+ 0.636514 3 3 0 3 6 TCGA-DX-A3U5-01A-11R-A22K-07 MKL2~Nchr11~24230873 intergenic "MKL2," "-," chr16~chr11 14234617 24230873 18 ++ 1.801951 16 7 9 16 56 TCGA-DX-A3U5-01A-11R-A22K-07 MKL2~Nchr11~24230873 intergenic "MKL2," "-," chr16~chr11 14280892 24230873 5 ++ 1.332179 5 3 2 5 8 TCGA-DX-A3U5-01A-11R-A22K-07 NAV3~Nchr12~83616600 intergenic "NAV3," "-," chr12~chr12 78452895 83616600 10 +- 1.609438 10 7 3 10 102 TCGA-DX-A3U5-01A-11R-A22K-07 NAV3~Nchr12~83635037 intergenic "NAV3," "-," chr12~chr12 78452895 83635037 2 +- 0.693147 1 0 1 1 96 TCGA-DX-A3U5-01A-11R-A22K-07 NAV3~Nchr12~83646535 intergenic "NAV3," "-," chr12~chr12 78452895 83646535 63 +- 2.73423 62 21 40 62 278 TCGA-DX-A3U5-01A-11R-A22K-07 NAV3~Nchr12~98496405 intergenic "NAV3," "-," chr12~chr12 78516208 98496405 26 ++ 2.724256 26 12 13 26 110 TCGA-DX-A3U5-01A-11R-A22K-07 NDUFA9~C12orf4 fusion "NDUFA9," "C12orf4," chr12~chr12 4771801 4600400 8 +- 1.906155 8 5 3 8 36 TCGA-DX-A3U5-01A-11R-A22K-07 NUP107~Nchr12~70545803 intergenic "NUP107," "-," chr12~chr12 69085892 70545803 11 ++ 2.019815 10 0 10 10 72 TCGA-DX-A3U5-01A-11R-A22K-07 NUP107~Nchr12~70549257 intergenic "NUP107," "-," chr12~chr12 69085892 70549257 127 ++ 2.996428 148 84 40 148 368 TCGA-DX-A3U5-01A-11R-A22K-07 NUP107~Nchr12~70549257 intergenic "NUP107," "-," chr12~chr12 69084526 70549257 5 ++ 1.332179 5 3 2 5 88 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr11~27603245~RPS25 intergenic "-," "RPS25," chr11~chr11 27603245 118889038 2 -- 0.693147 2 0 2 2 12 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr11~74457029~Nchr12~89015224 intergenic "-," "-," chr11~chr12 74457029 89015224 28 -- 2.048043 28 25 3 28 308 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 36 -+ 2.191094 9 0 9 9 32 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr11~93922106~ARPC3 intergenic "-," "ARPC3," chr11~chr12 93922106 110888131 9 +- 1.735126 6 0 6 6 26 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr12~113828023~Nchr12~113828238 intergenic "-," "-," chr12~chr12 113828023 113828238 2 -- 0.693147 2 1 1 2 4 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr12~113828235~Nchr12~113828653 intergenic "-," "-," chr12~chr12 113828235 113828653 3 -- 0.636514 3 1 2 3 8 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr12~113828500~Nchr12~113828717 intergenic "-," "-," chr12~chr12 113828500 113828717 3 -- 0.636514 3 0 3 3 12 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr12~113828567~Nchr12~113828805 intergenic "-," "-," chr12~chr12 113828567 113828805 2 -- 0.693147 1 0 1 1 12 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr12~113828635~Nchr12~113828805 intergenic "-," "-," chr12~chr12 113828635 113828805 3 -- 0.636514 3 0 3 3 6 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr12~113828706~Nchr12~113828846 intergenic "-," "-," chr12~chr12 113828706 113828846 3 -- 0.636514 3 0 3 3 20 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr12~113828718~Nchr12~113828846 intergenic "-," "-," chr12~chr12 113828718 113828846 5 -- 1.05492 4 0 4 4 20 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr12~113828737~Nchr12~113828846 intergenic "-," "-," chr12~chr12 113828737 113828846 6 -- 0.867563 6 0 6 6 20 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr12~71322262~SNRPF intergenic "-," "SNRPF," chr12~chr12 71322262 96254946 13 -+ 1.671595 6 0 6 6 66 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr12~71370764~RP11-536G4.1 intergenic "-," "RP11-536G4.1," chr12~chr12 71370764 96216867 2 -+ 0.693147 2 0 2 2 22 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr12~71370764~RP11-536G4.2 intergenic "-," "RP11-536G4.2," chr12~chr12 71370764 96232058 7 -+ 1.549826 6 3 3 6 34 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr12~71370764~SNRPF intergenic "-," "SNRPF," chr12~chr12 71370764 96254946 16 -+ 2.306669 9 1 8 9 26 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr12~77272450~CTD-2021H9.3 intergenic "-," "CTD-2021H9.3," chr12~chr12 77272450 71441459 4 -- 0.562335 4 1 3 4 4 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr12~89624166~Nchr12~89624037 intergenic "-," "-," chr12~chr12 89624166 89624037 2 ++ 0.693147 2 2 0 2 2 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr12~98155448~Nchr12~97848820 intergenic "-," "-," chr12~chr12 98155448 97848820 7 -+ 1.004242 3 1 2 3 12 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr12~98155448~OAS1 intergenic "-," "OAS1," chr12~chr12 98155448 113348856 5 -+ 1.332179 2 1 1 2 42 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr12~98155448~OAS1 intergenic "-," "OAS1," chr12~chr12 98155448 113354314 66 -+ 2.916781 46 28 18 46 90 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr17~50882735~TMTC2 intergenic "-," "TMTC2," chr17~chr12 50882735 83343003 33 -- 2.255279 10 10 0 10 14 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151282 7 -- 1.549826 2 0 2 2 14 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 10 -- 1.748067 5 0 5 5 14 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 61 -+ 2.800706 57 31 25 57 348 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr3~112316463~Nchr3~112316311 intergenic "-," "-," chr3~chr3 112316463 112316311 5 ++ 0.673012 5 0 5 5 10 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr3~112316693~Nchr3~112316793 intergenic "-," "-," chr3~chr3 112316693 112316793 6 -- 1.56071 6 1 5 6 14 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr6~151546952~Nchr12~89015224 intergenic "-," "-," chr6~chr12 151546952 89015224 9 -- 1.21489 9 0 9 9 132 TCGA-DX-A3U5-01A-11R-A22K-07 Nchr7~122851497~Nchr7~123096679 intergenic "-," "-," chr7~chr7 122851497 123096679 18 ++ 2.110017 18 1 17 18 62 TCGA-DX-A3U5-01A-11R-A22K-07 NchrX~36982319~NchrX~36698022 intergenic "-," "-," chrX~chrX 36982319 36698022 3 -- 1.098612 3 0 3 3 24 TCGA-DX-A3U5-01A-11R-A22K-07 PDE5A~Nchr6~22136898 intergenic "PDE5A," "-," chr4~chr6 120517678 22136898 3 -- 1.098612 3 2 1 3 24 TCGA-DX-A3U5-01A-11R-A22K-07 PEX7~TSFM fusion "PEX7," "RP11-571M6.15,TSFM," chr6~chr12 137187871 58180823 2 ++ 0.693147 2 2 0 2 12 TCGA-DX-A3U5-01A-11R-A22K-07 PFKFB3~RASGRP3 fusion "PFKFB3," "RASGRP3," chr10~chr2 6186976 33661507 3 ++ 1.098612 2 1 1 2 16 TCGA-DX-A3U5-01A-11R-A22K-07 PLXNC1~TXNRD1 fusion "PLXNC1," "TXNRD1," chr12~chr12 94676177 104742131 165 ++ 3.238374 161 90 70 161 680 TCGA-DX-A3U5-01A-11R-A22K-07 PTPN11~Nchr12~97848820 intergenic "PTPN11," "-," chr12~chr12 112888316 97848820 4 ++ 1.039721 4 0 4 4 6 TCGA-DX-A3U5-01A-11R-A22K-07 PTPN11~Nchr12~97853382 intergenic "PTPN11," "-," chr12~chr12 112888316 97853382 4 ++ 1.386294 3 1 2 3 4 TCGA-DX-A3U5-01A-11R-A22K-07 PTPN11~Nchr12~98155617 intergenic "PTPN11," "-," chr12~chr12 112888316 98155617 18 +- 1.618849 15 5 10 15 92 TCGA-DX-A3U5-01A-11R-A22K-07 PTPN11~OAS1 fusion "PTPN11," "OAS1," chr12~chr12 112888316 113348856 107 ++ 2.799726 102 63 38 102 650 TCGA-DX-A3U5-01A-11R-A22K-07 PTPN11~OAS1 fusion "PTPN11," "OAS1," chr12~chr12 112888316 113348903 8 ++ 1.732868 7 5 2 7 726 TCGA-DX-A3U5-01A-11R-A22K-07 PTPN11~OAS1 fusion "PTPN11," "OAS1," chr12~chr12 112888316 113354314 361 ++ 3.225439 351 196 155 351 1152 TCGA-DX-A3U5-01A-11R-A22K-07 PTPRR~RP11-536G4.1 fusion "PTPRR," "RP11-536G4.1," chr12~chr12 71314113 96216867 6 -+ 1.329661 6 1 5 6 78 TCGA-DX-A3U5-01A-11R-A22K-07 PTPRR~SNRPF fusion "PTPRR," "SNRPF," chr12~chr12 71314113 96254946 19 -+ 2.433699 16 11 5 16 92 TCGA-DX-A3U5-01A-11R-A22K-07 REV3L~Nchr6~108859056 intergenic "REV3L," "-," chr6~chr6 111634555 108859056 2 -+ 0.693147 2 1 1 2 4 TCGA-DX-A3U5-01A-11R-A22K-07 RP1-34H18.1~AVIL fusion "RP1-34H18.1," "AVIL," chr12~chr12 77718994 58209842 7 +- 1.549826 7 5 2 7 40 TCGA-DX-A3U5-01A-11R-A22K-07 RP11-611E13.2~MUCL1 fusion "RP11-611E13.2," "MUCL1," chr12~chr12 70636577 55248900 4 -+ 0.693147 4 0 4 4 2 TCGA-DX-A3U5-01A-11R-A22K-07 RPS12~Nchr12~89015219 intergenic "RPS12," "-," chr6~chr12 133135921 89015219 3 +- 1.098612 3 3 0 3 1694 TCGA-DX-A3U5-01A-11R-A22K-07 RPS12~Nchr12~89015224 intergenic "RPS12," "-," chr6~chr12 133135921 89015224 309 +- 3.018771 302 286 12 302 1702 TCGA-DX-A3U5-01A-11R-A22K-07 RPS12~Nchr12~89015224 intergenic "RPS12," "-," chr6~chr12 133136363 89015224 147 +- 2.943872 144 88 53 144 1344 TCGA-DX-A3U5-01A-11R-A22K-07 RPS12~Nchr12~89015224 intergenic "RPS12," "-," chr6~chr12 133136227 89015224 474 +- 3.06026 444 283 159 444 2202 TCGA-DX-A3U5-01A-11R-A22K-07 RPS12~Nchr6~17756059 intergenic "RPS12," "-," chr6~chr6 133136363 17756059 4 +- 1.039721 4 1 3 4 2 TCGA-DX-A3U5-01A-11R-A22K-07 RPS12~Nchr6~17756059 intergenic "RPS12," "-," chr6~chr6 133136227 17756059 2 +- 0.693147 2 1 1 2 2 TCGA-DX-A3U5-01A-11R-A22K-07 RPSAP52~RP11-81H14.2 fusion "RPSAP52," "RP11-81H14.2," chr12~chr12 66220623 68727444 23 -- 2.054356 23 2 21 23 66 TCGA-DX-A3U5-01A-11R-A22K-07 RSF1~PRRC2C fusion "RSF1," "PRRC2C," chr11~chr1 77396150 171535372 37 -+ 2.622623 31 8 23 31 84 TCGA-DX-A3U5-01A-11R-A22K-07 SART3~PAH fusion "SART3," "PAH," chr12~chr12 108941663 103288696 15 -- 1.93381 15 5 10 15 102 TCGA-DX-A3U5-01A-11R-A22K-07 SGMS2~Nchr12~103083884 intergenic "SGMS2," "-," chr4~chr12 108779709 103083884 8 ++ 1.386294 7 0 7 7 4 TCGA-DX-A3U5-01A-11R-A22K-07 SGMS2~Nchr12~58331804 intergenic "SGMS2," "-," chr4~chr12 108779709 58331804 2 +- 0.693147 2 2 0 2 4 TCGA-DX-A3U5-01A-11R-A22K-07 SGMS2~RP11-620J15.3 fusion "SGMS2," "RP11-620J15.3," chr4~chr12 108779709 58325520 6 +- 1.242453 6 1 5 6 176 TCGA-DX-A3U5-01A-11R-A22K-07 SGMS2~RP11-620J15.3 fusion "SGMS2," "RP11-620J15.3," chr4~chr12 108779709 58329336 111 +- 2.99084 106 52 54 106 440 TCGA-DX-A3U5-01A-11R-A22K-07 SGMS2~RP11-620J15.3 fusion "SGMS2," "RP11-620J15.3," chr4~chr12 108779740 58329336 17 +- 2.363921 15 8 7 15 464 TCGA-DX-A3U5-01A-11R-A22K-07 SH2B3~ATXN2 fusion "SH2B3," "ATXN2," chr12~chr12 111844081 111993723 5 +- 1.332179 5 0 5 5 6 TCGA-DX-A3U5-01A-11R-A22K-07 SHPRH~B4GALNT1 fusion "SHPRH," "B4GALNT1," chr6~chr12 146285293 58025916 4 -- 1.386294 3 2 1 3 12 TCGA-DX-A3U5-01A-11R-A22K-07 SOS1~Nchr4~36274569 intergenic "SOS1," "-," chr2~chr4 39214614 36274569 5 -+ 1.332179 5 2 3 5 20 TCGA-DX-A3U5-01A-11R-A22K-07 SOS1~Nchr4~36274569 intergenic "SOS1," "-," chr2~chr4 39212360 36274569 2 -+ 0.693147 2 1 1 2 16 TCGA-DX-A3U5-01A-11R-A22K-07 TM9SF2~Nchr13~100093937 intergenic "TM9SF2," "-," chr13~chr13 100207901 100093937 13 +- 1.844621 11 1 10 11 68 TCGA-DX-A3U5-01A-11R-A22K-07 TM9SF2~Nchr13~100098519 intergenic "TM9SF2," "-," chr13~chr13 100207901 100098519 10 +- 1.470808 9 5 4 9 32 TCGA-DX-A3U5-01A-11R-A22K-07 TM9SF2~Nchr13~100098875 intergenic "TM9SF2," "-," chr13~chr13 100207901 100098875 3 +- 1.098612 3 1 2 3 2 TCGA-DX-A3U5-01A-11R-A22K-07 TMTC2~LYZ fusion "TMTC2," "LYZ," chr12~chr12 83379825 69743888 50 ++ 2.756917 50 25 25 50 154 TCGA-DX-A3U5-01A-11R-A22K-07 TPCN1~Nchr12~92742465 intergenic "TPCN1," "-," chr12~chr12 113664769 92742465 8 ++ 1.906155 8 2 6 8 28 TCGA-DX-A3U5-01A-11R-A22K-07 UBE2J2~Nchr1~5729772 intergenic "UBE2J2," "-," chr1~chr1 1203242 5729772 16 -- 2.046739 14 5 9 14 34 TCGA-DX-A3U5-01A-11R-A22K-07 UBE4B~Nchr1~5005766 intergenic "UBE4B," "-," chr1~chr1 10228328 5005766 7 ++ 1.549826 5 5 0 5 14 TCGA-DX-A3U5-01A-11R-A22K-07 UHRF1BP1L~ZDHHC17 fusion "UHRF1BP1L," "ZDHHC17," chr12~chr12 100502164 77191214 5 -+ 1.332179 4 3 1 4 16 TCGA-DX-A3U5-01A-11R-A22K-07 YEATS4~Nchr12~68402626 intergenic "YEATS4," "-," chr12~chr12 69753803 68402626 2 +- 0.693147 2 2 0 2 12 TCGA-DX-A3U5-01A-11R-A22K-07 YEATS4~Nchr12~68420486 intergenic "YEATS4," "-," chr12~chr12 69753803 68420486 31 +- 2.559293 30 16 14 30 90 TCGA-DX-A3U5-01A-11R-A22K-07 YEATS4~Nchr12~69463787 intergenic "YEATS4," "-," chr12~chr12 69764755 69463787 6 +- 0.693147 6 1 5 6 24 TCGA-DX-A3U5-01A-11R-A22K-07 YEATS4~Nchr12~69465962 intergenic "YEATS4," "-," chr12~chr12 69764755 69465962 6 +- 1.56071 6 2 4 6 42 TCGA-DX-A3U5-01A-11R-A22K-07 YEATS4~Nchr12~69549948 intergenic "YEATS4," "-," chr12~chr12 69764755 69549948 6 +- 1.56071 6 5 1 6 2 TCGA-DX-A3U5-01A-11R-A22K-07 YEATS4~Nchr12~69574088 intergenic "YEATS4," "-," chr12~chr12 69764755 69574088 6 +- 1.242453 6 1 5 6 18 TCGA-DX-A3U5-01A-11R-A22K-07 YEATS4~Nchr6~142353845 intergenic "YEATS4," "-," chr12~chr6 69764755 142353845 19 ++ 2.201512 18 5 13 18 86 TCGA-DX-A3U5-01A-11R-A22K-07 YEATS4~PTPRB fusion "YEATS4," "PTPRB,RP11-588H23.3," chr12~chr12 69753803 70913979 13 ++ 1.498569 12 4 8 12 128 TCGA-DX-A3U5-01A-11R-A22K-07 YEATS4~RP11-588H23.3 fusion "YEATS4," "RP11-588H23.3," chr12~chr12 69753803 70901675 66 ++ 2.802188 58 43 15 58 104 TCGA-DX-A3U5-01A-11R-A22K-07 YEATS4~RP11-588H23.3 fusion "YEATS4," "RP11-588H23.3," chr12~chr12 69753803 70903992 4 ++ 1.386294 4 2 2 4 40 TCGA-DX-A3U5-01A-11R-A22K-07 YEATS4~RP11-588H23.3 fusion "YEATS4," "RP11-588H23.3," chr12~chr12 69753803 70921455 3 ++ 0.636514 3 3 0 3 4 TCGA-DX-A3U5-01A-11R-A22K-07 ZNF828~Nchr1~249229631 intergenic "ZNF828," "-," chr13~chr1 115080118 249229631 31 +- 2.561526 4 2 2 4 6 TCGA-DX-A3LT-01A-12R-A21T-07 AC091196.1~C11orf41 fusion "AC091196.1," "C11orf41," chr11~chr11 1501623 33667232 4 -+ 1.039721 4 1 3 4 24 TCGA-DX-A3LT-01A-12R-A21T-07 AC129929.5~CARS fusion "CD81,AC129929.5," "CARS," chr11~chr11 2398816 3023830 20 -- 2.302585 20 2 18 20 30 TCGA-DX-A3LT-01A-12R-A21T-07 ALDH2~Nchr12~116886049 intergenic "ALDH2,RP11-162P23.2," "-," chr12~chr12 112223150 116886049 42 ++ 2.689536 40 24 16 40 146 TCGA-DX-A3LT-01A-12R-A21T-07 ALDH2~Nchr12~116886319 intergenic "ALDH2,RP11-162P23.2," "-," chr12~chr12 112223150 116886319 5 ++ 1.332179 5 3 2 5 66 TCGA-DX-A3LT-01A-12R-A21T-07 ALDH2~Nchr12~116893593 intergenic "ALDH2,RP11-162P23.2," "-," chr12~chr12 112223150 116893593 3 ++ 1.098612 3 0 3 3 42 TCGA-DX-A3LT-01A-12R-A21T-07 ALDH2~Nchr12~116893597 intergenic "ALDH2,RP11-162P23.2," "-," chr12~chr12 112223150 116893597 10 ++ 1.748067 10 9 1 10 36 TCGA-DX-A3LT-01A-12R-A21T-07 ALDH2~Nchr12~116900439 intergenic "ALDH2,RP11-162P23.2," "-," chr12~chr12 112223150 116900439 5 ++ 1.332179 5 3 2 5 28 TCGA-DX-A3LT-01A-12R-A21T-07 ALDH2~Nchr12~116926081 intergenic "ALDH2,RP11-162P23.2," "-," chr12~chr12 112223150 116926081 7 ++ 1.549826 6 6 0 6 36 TCGA-DX-A3LT-01A-12R-A21T-07 ALDH2~Nchr12~116927866 intergenic "ALDH2,RP11-162P23.2," "-," chr12~chr12 112223150 116927866 4 ++ 1.039721 4 3 1 4 28 TCGA-DX-A3LT-01A-12R-A21T-07 ARNTL~RIC8B fusion "ARNTL," "RIC8B," chr11~chr12 13381971 107219504 64 ++ 2.678329 64 39 25 64 258 TCGA-DX-A3LT-01A-12R-A21T-07 ATP1B3~Nchr12~89623706 intergenic "ATP1B3," "-," chr3~chr12 141640905 89623706 39 ++ 2.740753 39 23 13 39 128 TCGA-DX-A3LT-01A-12R-A21T-07 BTBD10~Nchr19~31573017 intergenic "BTBD10," "-," chr11~chr19 13435077 31573017 17 -+ 2.220637 18 5 10 18 116 TCGA-DX-A3LT-01A-12R-A21T-07 BTBD10~Nchr19~31573189 intergenic "BTBD10," "-," chr11~chr19 13435077 31573189 9 -+ 1.581094 9 6 3 9 22 TCGA-DX-A3LT-01A-12R-A21T-07 C11orf41~Nchr11~34542619 intergenic "C11orf41," "-," chr11~chr11 33573787 34542619 7 ++ 1.277034 6 3 3 6 16 TCGA-DX-A3LT-01A-12R-A21T-07 C12orf26~Nchr19~31733781 intergenic "C12orf26," "-," chr12~chr19 82828503 31733781 8 +- 1.494175 8 7 1 8 32 TCGA-DX-A3LT-01A-12R-A21T-07 C12orf26~Nchr19~31733781 intergenic "C12orf26," "-," chr12~chr19 82832570 31733781 9 +- 1.889159 7 3 4 7 44 TCGA-DX-A3LT-01A-12R-A21T-07 C12orf26~Nchr19~31764630 intergenic "C12orf26," "-," chr12~chr19 82832570 31764630 4 +- 1.386294 4 3 1 4 20 TCGA-DX-A3LT-01A-12R-A21T-07 C12orf29~Nchr19~29878871 intergenic "C12orf29," "-," chr12~chr19 88440753 29878871 122 +- 3.023738 87 62 25 87 214 TCGA-DX-A3LT-01A-12R-A21T-07 CARS~Nchr11~20291593 intergenic "CARS," "-," chr11~chr11 3078573 20291593 3 -+ 0.636514 2 0 2 2 168 TCGA-DX-A3LT-01A-12R-A21T-07 CARS~Nchr11~20295342 intergenic "CARS," "-," chr11~chr11 3078573 20295342 4 -+ 1.039721 3 0 3 3 164 TCGA-DX-A3LT-01A-12R-A21T-07 CARS~Nchr11~20295931 intergenic "CARS," "-," chr11~chr11 3078573 20295931 150 -+ 2.945129 146 0 146 146 172 TCGA-DX-A3LT-01A-12R-A21T-07 CD44~Nchr3~144827650 intergenic "CD44," "-," chr11~chr3 35201954 144827650 45 +- 2.802966 29 26 3 29 32 TCGA-DX-A3LT-01A-12R-A21T-07 CEP290~Nchr12~70549257 intergenic "CEP290," "-," chr12~chr12 88452625 70549257 103 -+ 2.854792 107 42 58 107 324 TCGA-DX-A3LT-01A-12R-A21T-07 CEP290~Nchr12~83532657 intergenic "CEP290," "-," chr12~chr12 88530420 83532657 5 -+ 1.05492 5 3 2 5 12 TCGA-DX-A3LT-01A-12R-A21T-07 CEP290~Nchr12~86283113 intergenic "CEP290," "-," chr12~chr12 88530420 86283113 4 -- 1.386294 4 1 3 4 22 TCGA-DX-A3LT-01A-12R-A21T-07 CEP290~Nchr12~86283113 intergenic "CEP290," "-," chr12~chr12 88524322 86283113 5 -- 0.500402 5 4 1 5 56 TCGA-DX-A3LT-01A-12R-A21T-07 CEP290~Nchr12~88287486 intergenic "CEP290," "-," chr12~chr12 88524322 88287486 16 -+ 1.474057 13 2 11 13 114 TCGA-DX-A3LT-01A-12R-A21T-07 CEP290~Nchr12~88287486 intergenic "CEP290," "-," chr12~chr12 88524045 88287486 4 -+ 1.039721 4 0 4 4 28 TCGA-DX-A3LT-01A-12R-A21T-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265237 189871089 3 -+ 1.098612 2 1 1 2 10 TCGA-DX-A3LT-01A-12R-A21T-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94056607 48270054 4 +- 0.562335 3 2 1 3 4 TCGA-DX-A3LT-01A-12R-A21T-07 COL8A1~C3orf26 fusion "COL8A1," "C3orf26," chr3~chr3 99513226 99865817 5 ++ 0.500402 5 0 5 5 8 TCGA-DX-A3LT-01A-12R-A21T-07 DCPS~FGF3 fusion "DCPS," "FGF3," chr11~chr11 126215394 69625468 9 +- 2.043192 9 4 5 9 32 TCGA-DX-A3LT-01A-12R-A21T-07 DLAT~RP11-657K20.2 fusion "DLAT," "RP11-657K20.2," chr11~chr11 111899669 88244919 3 ++ 0.636514 3 0 3 3 6 TCGA-DX-A3LT-01A-12R-A21T-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 2 +- 0.693147 2 1 1 2 60 TCGA-DX-A3LT-01A-12R-A21T-07 ETS1~Nchr11~134795774 intergenic "ETS1," "-," chr11~chr11 128350086 134795774 43 -+ 2.114886 45 41 2 45 72 TCGA-DX-A3LT-01A-12R-A21T-07 ETS1~Nchr11~134802698 intergenic "ETS1," "-," chr11~chr11 128350086 134802698 11 -+ 1.893788 11 5 6 11 50 TCGA-DX-A3LT-01A-12R-A21T-07 FAR1~C3orf55 fusion "FAR1," "C3orf55," chr11~chr3 13722039 157271019 101 ++ 2.944039 98 39 57 98 336 TCGA-DX-A3LT-01A-12R-A21T-07 FAR1~C3orf55 fusion "FAR1," "C3orf55," chr11~chr3 13722039 157287096 3 ++ 1.098612 2 1 1 2 98 TCGA-DX-A3LT-01A-12R-A21T-07 HDAC7~Nchr12~64555462 intergenic "HDAC7," "-," chr12~chr12 48181828 64555462 4 -+ 1.386294 4 1 3 4 2 TCGA-DX-A3LT-01A-12R-A21T-07 HDAC7~Nchr12~64566475 intergenic "HDAC7," "-," chr12~chr12 48181828 64566475 27 -+ 2.445591 24 13 11 24 112 TCGA-DX-A3LT-01A-12R-A21T-07 HDAC7~Nchr12~64570148 intergenic "HDAC7," "-," chr12~chr12 48181828 64570148 10 -+ 2.025326 10 9 1 10 106 TCGA-DX-A3LT-01A-12R-A21T-07 HDAC7~Nchr12~64574324 intergenic "HDAC7," "-," chr12~chr12 48181828 64574324 2 -+ 0.693147 2 1 1 2 6 TCGA-DX-A3LT-01A-12R-A21T-07 HDAC7~Nchr5~23635292 intergenic "HDAC7," "-," chr12~chr5 48213550 23635292 10 -+ 1.695743 8 1 7 8 10 TCGA-DX-A3LT-01A-12R-A21T-07 HDAC7~RPSAP52 fusion "HDAC7," "RPSAP52," chr12~chr12 48191167 66220741 7 -- 0.9557 7 3 4 7 12 TCGA-DX-A3LT-01A-12R-A21T-07 HDAC7~SRGAP1 fusion "HDAC7," "SRGAP1," chr12~chr12 48181828 64536075 376 -+ 3.298224 367 149 211 367 1260 TCGA-DX-A3LT-01A-12R-A21T-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 172 -- 2.277991 174 1 168 174 100 TCGA-DX-A3LT-01A-12R-A21T-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 831 -- 2.585707 535 55 476 535 8 TCGA-DX-A3LT-01A-12R-A21T-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32497902 32525963 81 -- 2.414723 25 3 22 25 2 TCGA-DX-A3LT-01A-12R-A21T-07 HMGA2~Nchr12~55398346 intergenic "HMGA2," "-," chr12~chr12 66232349 55398346 1155 ++ 3.247199 1128 618 506 1128 3528 TCGA-DX-A3LT-01A-12R-A21T-07 KDM2A~Nchr11~88172189 intergenic "KDM2A," "-," chr11~chr11 66995634 88172189 3 +- 1.098612 2 1 1 2 22 TCGA-DX-A3LT-01A-12R-A21T-07 KDM2A~Nchr11~88172218 intergenic "KDM2A," "-," chr11~chr11 66995634 88172218 4 +- 1.039721 2 2 0 2 20 TCGA-DX-A3LT-01A-12R-A21T-07 KITLG~Nchr12~89015224 intergenic "KITLG," "-," chr12~chr12 88898936 89015224 16 -- 2.014036 16 10 6 16 70 TCGA-DX-A3LT-01A-12R-A21T-07 LDLRAD3~AC091196.1 fusion "LDLRAD3," "AC091196.1," chr11~chr11 35965694 1502115 48 +- 2.932655 45 43 2 45 178 TCGA-DX-A3LT-01A-12R-A21T-07 MAPKAPK5~ACAD10 fusion "MAPKAPK5," "ACAD10," chr12~chr12 112308984 112182447 7 ++ 1.549826 7 3 4 7 32 TCGA-DX-A3LT-01A-12R-A21T-07 MARCH9~Nchr12~69751694 intergenic "MARCH9," "-," chr12~chr12 58152659 69751694 32 ++ 2.262094 31 26 5 31 90 TCGA-DX-A3LT-01A-12R-A21T-07 MARCH9~YEATS4 fusion "MARCH9," "YEATS4," chr12~chr12 58150867 69756568 4 ++ 1.039721 4 0 4 4 20 TCGA-DX-A3LT-01A-12R-A21T-07 NAP1L1~PTPRR fusion "NAP1L1," "PTPRR," chr12~chr12 76478347 71158558 58 -- 2.709027 54 49 4 54 136 TCGA-DX-A3LT-01A-12R-A21T-07 NTN4~Nchr10~92376582 intergenic "NTN4," "-," chr12~chr10 96104219 92376582 19 -+ 2.305657 10 0 10 10 20 TCGA-DX-A3LT-01A-12R-A21T-07 NTN4~Nchr10~92411528 intergenic "NTN4," "-," chr12~chr10 96104219 92411528 5 -+ 1.332179 4 2 2 4 58 TCGA-DX-A3LT-01A-12R-A21T-07 NTN4~Nchr10~92430828 intergenic "NTN4," "-," chr12~chr10 96104219 92430828 20 -+ 2.276423 19 10 9 19 60 TCGA-DX-A3LT-01A-12R-A21T-07 NTN4~Nchr10~92476580 intergenic "NTN4," "-," chr12~chr10 96104219 92476580 5 -+ 1.05492 5 5 0 5 36 TCGA-DX-A3LT-01A-12R-A21T-07 NTN4~Nchr10~92485714 intergenic "NTN4," "-," chr12~chr10 96104219 92485714 2 -+ 0.693147 2 1 1 2 14 TCGA-DX-A3LT-01A-12R-A21T-07 Nchr10~77530612~C10orf11 intergenic "-," "C10orf11," chr10~chr10 77530612 77795766 3 ++ 1.098612 3 0 3 3 24 TCGA-DX-A3LT-01A-12R-A21T-07 Nchr10~77531295~C10orf11 intergenic "-," "C10orf11," chr10~chr10 77531295 77795766 7 ++ 1.549826 7 0 7 7 4 TCGA-DX-A3LT-01A-12R-A21T-07 Nchr11~20296204~TSHZ3 intergenic "-," "TSHZ3," chr11~chr19 20296204 31828084 21 ++ 2.227438 21 7 14 21 24 TCGA-DX-A3LT-01A-12R-A21T-07 Nchr11~27879311~BRSK2 intergenic "-," "BRSK2," chr11~chr11 27879311 1457270 8 -+ 1.494175 6 6 0 6 20 TCGA-DX-A3LT-01A-12R-A21T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 169 -+ 2.563583 54 0 54 54 60 TCGA-DX-A3LT-01A-12R-A21T-07 Nchr12~83539506~Nchr12~85022903 intergenic "-," "-," chr12~chr12 83539506 85022903 3 +- 0.636514 3 1 2 3 12 TCGA-DX-A3LT-01A-12R-A21T-07 Nchr14~106444769~Nchr14~106444858 intergenic "-," "-," chr14~chr14 106444769 106444858 2 -- 0.693147 1 0 1 1 4 TCGA-DX-A3LT-01A-12R-A21T-07 Nchr17~14608784~Nchr17~14608880 intergenic "-," "-," chr17~chr17 14608784 14608880 4 -- 0.562335 1 0 1 1 4 TCGA-DX-A3LT-01A-12R-A21T-07 Nchr19~23015184~Nchr21~35320429 intergenic "-," "-," chr19~chr21 23015184 35320429 23 +- 2.713579 15 2 13 15 42 TCGA-DX-A3LT-01A-12R-A21T-07 Nchr19~28556272~SLC6A15 intergenic "-," "SLC6A15," chr19~chr12 28556272 85286087 17 +- 2.507026 13 5 8 13 28 TCGA-DX-A3LT-01A-12R-A21T-07 Nchr19~28556272~SLC6A15 intergenic "-," "SLC6A15," chr19~chr12 28556272 85306484 32 +- 2.986841 25 15 9 25 88 TCGA-DX-A3LT-01A-12R-A21T-07 Nchr19~29013660~Nchr12~87581262 intergenic "-," "-," chr19~chr12 29013660 87581262 8 +- 1.494175 7 6 1 7 2 TCGA-DX-A3LT-01A-12R-A21T-07 Nchr19~29878705~Nchr12~103595667 intergenic "-," "-," chr19~chr12 29878705 103595667 93 -- 3.053003 66 44 20 66 340 TCGA-DX-A3LT-01A-12R-A21T-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 20 -+ 2.623522 21 6 14 21 422 TCGA-DX-A3LT-01A-12R-A21T-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145013721 6 -+ 1.329661 6 1 5 6 122 TCGA-DX-A3LT-01A-12R-A21T-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 5 ++ 1.05492 2 2 0 2 36 TCGA-DX-A3LT-01A-12R-A21T-07 Nchr6~151546858~RPS12 intergenic "-," "RPS12," chr6~chr6 151546858 133138099 11 ++ 2.271869 7 4 3 7 116 TCGA-DX-A3LT-01A-12R-A21T-07 Nchr9~33624508~Nchr9~33624745 intergenic "-," "-," chr9~chr9 33624508 33624745 2 -- 0.693147 1 0 1 1 34 TCGA-DX-A3LT-01A-12R-A21T-07 NchrY~8243094~RP11-13N12.2 intergenic "-," "RP11-13N12.2," chrY~chr8 8243094 16522332 9 -+ 1.889159 9 5 4 9 30 TCGA-DX-A3LT-01A-12R-A21T-07 OS9~Nchr12~88324984 intergenic "OS9," "-," chr12~chr12 58114301 88324984 225 ++ 2.823723 213 87 126 213 890 TCGA-DX-A3LT-01A-12R-A21T-07 OS9~Nchr12~88325496 intergenic "OS9," "-," chr12~chr12 58114301 88325496 13 ++ 1.671595 11 4 7 11 58 TCGA-DX-A3LT-01A-12R-A21T-07 PIWIL4~THRSP fusion "PIWIL4," "THRSP," chr11~chr11 94310658 77778705 2 ++ 0.693147 2 1 1 2 10 TCGA-DX-A3LT-01A-12R-A21T-07 PTPRR~Nchr19~28556085 intergenic "PTPRR," "-," chr12~chr19 71147971 28556085 41 -+ 2.658528 31 21 10 31 264 TCGA-DX-A3LT-01A-12R-A21T-07 PTPRR~Nchr19~28556151 intergenic "PTPRR," "-," chr12~chr19 71147971 28556151 3 -+ 1.098612 2 2 0 2 144 TCGA-DX-A3LT-01A-12R-A21T-07 PTPRR~SLC6A15 fusion "PTPRR," "SLC6A15," chr12~chr12 71147971 85286087 14 -- 2.069202 13 12 1 13 80 TCGA-DX-A3LT-01A-12R-A21T-07 RIC8B~Nchr19~32530399 intergenic "RIC8B," "-," chr12~chr19 107245372 32530399 34 ++ 2.565752 32 22 10 32 160 TCGA-DX-A3LT-01A-12R-A21T-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 11 ++ 1.84622 11 9 2 11 16 TCGA-DX-A3LT-01A-12R-A21T-07 RPS12~Nchr6~151547126 intergenic "RPS12," "-," chr6~chr6 133135708 151547126 4 -- 1.386294 2 0 2 2 70 TCGA-DX-A3LT-01A-12R-A21T-07 SLC6A15~C12orf28 fusion "SLC6A15," "C12orf28," chr12~chr12 85306302 70297424 13 -+ 1.991509 13 9 4 13 46 TCGA-DX-A3LT-01A-12R-A21T-07 STAT2~FRS2 fusion "STAT2," "FRS2," chr12~chr12 56742708 69903881 20 -+ 2.12516 19 12 7 19 84 TCGA-DX-A3LT-01A-12R-A21T-07 TRIM44~Nchr11~34429042 intergenic "TRIM44," "-," chr11~chr11 35756993 34429042 10 +- 1.504788 9 7 2 9 36 TCGA-DX-A3LT-01A-12R-A21T-07 UBR2~Nchr6~48153463 intergenic "UBR2," "-," chr6~chr6 42541731 48153463 5 +- 1.609438 4 2 2 4 16 TCGA-DX-A3LT-01A-12R-A21T-07 ZDHHC13~MGAT4C fusion "ZDHHC13," "MGAT4C," chr11~chr12 19174231 86383330 16 +- 2.009709 13 4 9 13 62 TCGA-DX-A3LT-01A-12R-A21T-07 ZDHHC13~MGAT4C fusion "ZDHHC13," "MGAT4C," chr11~chr12 19174231 86405680 4 +- 1.386294 4 3 1 4 40 TCGA-DX-A3LT-01A-12R-A21T-07 ZNRF3~FAM19A5 fusion "ZNRF3," "FAM19A5," chr22~chr22 29383189 49042409 3 ++ 0.636514 2 0 2 2 16 TCGA-DX-A3LU-01A-11R-A21T-07 AC096579.7~IGKJ4 fusion "IGKC,AC096579.7," "IGKJ4," chr2~chr2 89157090 89160418 5 -- 0.500402 1 0 1 1 256 TCGA-DX-A3LU-01A-11R-A21T-07 CD2AP~Nchr12~58554202 intergenic "CD2AP," "-," chr6~chr12 47563762 58554202 11 ++ 0.585953 7 4 3 7 34 TCGA-DX-A3LU-01A-11R-A21T-07 CD2AP~Nchr12~61641965 intergenic "CD2AP," "-," chr6~chr12 47563762 61641965 46 ++ 2.306437 44 23 21 44 154 TCGA-DX-A3LU-01A-11R-A21T-07 CD2AP~Nchr12~61725019 intergenic "CD2AP," "-," chr6~chr12 47563762 61725019 188 ++ 3.005303 171 58 113 171 444 TCGA-DX-A3LU-01A-11R-A21T-07 CD2AP~Nchr12~61739679 intergenic "CD2AP," "-," chr6~chr12 47563762 61739679 6 ++ 1.011404 6 2 4 6 26 TCGA-DX-A3LU-01A-11R-A21T-07 CD2AP~Nchr12~76350151 intergenic "CD2AP," "-," chr6~chr12 47471176 76350151 15 +- 1.736741 8 3 5 8 14 TCGA-DX-A3LU-01A-11R-A21T-07 CD2AP~Nchr6~39990834 intergenic "CD2AP," "-," chr6~chr6 47563762 39990834 22 +- 1.858519 19 0 19 19 36 TCGA-DX-A3LU-01A-11R-A21T-07 DAAM2~Nchr12~69494876 intergenic "RP11-61I13.3,DAAM2," "-," chr6~chr12 39859498 69494876 18 ++ 1.519109 18 7 11 18 46 TCGA-DX-A3LU-01A-11R-A21T-07 DCTN2~Nchr12~64566475 intergenic "DCTN2," "-," chr12~chr12 57939811 64566475 13 -+ 1.479133 13 2 11 13 128 TCGA-DX-A3LU-01A-11R-A21T-07 DCTN2~Nchr12~64570148 intergenic "DCTN2," "-," chr12~chr12 57939811 64570148 22 -+ 1.491419 22 17 5 22 106 TCGA-DX-A3LU-01A-11R-A21T-07 DFNB31~Nchr9~116907335 intergenic "DFNB31," "-," chr9~chr9 117266464 116907335 60 -- 2.228316 61 45 15 61 220 TCGA-DX-A3LU-01A-11R-A21T-07 DHX15~CCND3 fusion "DHX15," "CCND3," chr4~chr6 24543496 41959779 12 -- 1.473502 12 4 8 12 102 TCGA-DX-A3LU-01A-11R-A21T-07 FUT7~Nchr9~138302177 intergenic "FUT7," "-," chr9~chr9 139926431 138302177 10 -+ 1.220607 9 0 9 9 6 TCGA-DX-A3LU-01A-11R-A21T-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32487941 32548633 138 -- 2.166949 19 2 17 19 40 TCGA-DX-A3LU-01A-11R-A21T-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 240 -- 2.016317 247 0 240 247 114 TCGA-DX-A3LU-01A-11R-A21T-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 1508 -- 2.587093 911 147 759 911 6 TCGA-DX-A3LU-01A-11R-A21T-07 MEA1~Nchr6~40287163 intergenic "MEA1," "-," chr6~chr6 42980664 40287163 38 -+ 1.687317 38 7 31 38 182 TCGA-DX-A3LU-01A-11R-A21T-07 MEA1~Nchr6~43810248 intergenic "MEA1," "-," chr6~chr6 42980664 43810248 104 -+ 2.55059 65 51 14 65 204 TCGA-DX-A3LU-01A-11R-A21T-07 MON2~Nchr12~59507271 intergenic "MON2," "-," chr12~chr12 62972285 59507271 12 ++ 1.467734 12 10 2 12 20 TCGA-DX-A3LU-01A-11R-A21T-07 NPDC1~Nchr6~106629113 intergenic "NPDC1," "-," chr9~chr6 139934809 106629113 4 -+ 1.039721 3 1 2 3 4 TCGA-DX-A3LU-01A-11R-A21T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 114 -+ 2.05405 22 0 22 22 150 TCGA-DX-A3LU-01A-11R-A21T-07 Nchr12~76219503~Nchr12~69176061 intergenic "-," "-," chr12~chr12 76219503 69176061 5 -+ 0.500402 5 5 0 5 18 TCGA-DX-A3LU-01A-11R-A21T-07 Nchr18~72057278~Nchr18~72057473 intergenic "-," "-," chr18~chr18 72057278 72057473 7 -- 1.078992 6 0 6 6 4 TCGA-DX-A3LU-01A-11R-A21T-07 Nchr6~107263714~Nchr6~100665054 intergenic "-," "-," chr6~chr6 107263714 100665054 8 ++ 0.693147 8 4 4 8 54 TCGA-DX-A3LU-01A-11R-A21T-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 17 ++ 1.711547 7 7 0 7 10 TCGA-DX-A3LU-01A-11R-A21T-07 Nchr6~40185352~NCR2 intergenic "-," "NCR2," chr6~chr6 40185352 41303569 11 -+ 1.240684 11 10 1 11 50 TCGA-DX-A3LU-01A-11R-A21T-07 Nchr6~41340608~TREM2 intergenic "-," "TREM2," chr6~chr6 41340608 41130885 9 +- 0.348832 9 1 8 9 8 TCGA-DX-A3LU-01A-11R-A21T-07 Nchr6~43810370~Nchr6~40287163 intergenic "-," "-," chr6~chr6 43810370 40287163 37 ++ 2.000003 22 14 8 22 164 TCGA-DX-A3LU-01A-11R-A21T-07 Nchr6~43849490~Nchr6~40287163 intergenic "-," "-," chr6~chr6 43849490 40287163 4 ++ 0.562335 1 0 1 1 164 TCGA-DX-A3LU-01A-11R-A21T-07 QRSL1~VAV2 fusion "QRSL1," "VAV2," chr6~chr9 107090965 136726554 7 +- 0.9557 5 0 5 5 10 TCGA-DX-A3LU-01A-11R-A21T-07 R3HDM2~Nchr6~43299332 intergenic "R3HDM2," "-," chr12~chr6 57824503 43299332 5 -+ 0.500402 4 0 4 4 22 TCGA-DX-A3LU-01A-11R-A21T-07 REV3L~Nchr6~107263415 intergenic "REV3L," "-," chr6~chr6 111631056 107263415 32 -+ 1.359884 26 17 9 26 42 TCGA-DX-A3LU-01A-11R-A21T-07 RP11-114H23.1~Nchr3~80123665 intergenic "RP11-114H23.1," "-," chr12~chr3 76064676 80123665 17 +- 1.203332 15 0 15 15 24 TCGA-DX-A3LU-01A-11R-A21T-07 RP11-611E13.2~Nchr5~2543254 intergenic "RP11-611E13.2," "-," chr12~chr5 70636577 2543254 6 -- 0.636514 4 0 4 4 24 TCGA-DX-A3LU-01A-11R-A21T-07 RTN4IP1~Nchr6~100689391 intergenic "RTN4IP1," "-," chr6~chr6 107067077 100689391 15 -- 1.268094 15 6 9 15 10 TCGA-DX-A3LU-01A-11R-A21T-07 SLC29A1~Nchr12~70032590 intergenic "SLC29A1," "-," chr6~chr12 44200165 70032590 7 ++ 1.277034 7 5 2 7 8 TCGA-DX-A3LU-01A-11R-A21T-07 SLC29A1~Nchr12~70032590 intergenic "SLC29A1," "-," chr6~chr12 44200743 70032590 15 ++ 1.286873 15 3 12 15 20 TCGA-DX-A3LU-01A-11R-A21T-07 UBR2~BYSL fusion "UBR2," "BYSL," chr6~chr6 42620383 41895112 8 ++ 0.661563 8 0 8 8 16 TCGA-DX-A3LU-01A-11R-A21T-07 USP49~Nchr6~39960472 intergenic "USP49," "-," chr6~chr6 41859532 39960472 15 -- 1.062535 14 11 3 14 62 TCGA-DX-A3LU-01A-11R-A21T-07 USP49~Nchr6~41150901 intergenic "USP49," "-," chr6~chr6 41839302 41150901 7 -- 1.078992 7 7 0 7 22 TCGA-DX-A3LU-01A-11R-A21T-07 VAV2~RP11-229P13.15 fusion "VAV2," "RP11-229P13.15," chr9~chr9 136726496 139947237 7 -+ 0.59827 4 0 4 4 6 TCGA-DX-A3LU-01A-11R-A21T-07 ZDHHC17~NCR2 fusion "ZDHHC17," "NCR2," chr12~chr6 77158109 41303569 205 ++ 2.799861 204 10 191 204 610 TCGA-DX-A3LU-01A-11R-A21T-07 ZDHHC17~NCR2 fusion "ZDHHC17," "NCR2," chr12~chr6 77158109 41303825 29 ++ 1.450844 26 0 26 26 360 TCGA-DX-A3LU-01A-11R-A21T-07 ZDHHC17~Nchr12~70464680 intergenic "ZDHHC17," "-," chr12~chr12 77158109 70464680 15 ++ 1.547287 14 14 0 14 112 TCGA-DX-A3LU-01A-11R-A21T-07 ZDHHC17~Nchr12~70475719 intergenic "ZDHHC17," "-," chr12~chr12 77158109 70475719 5 ++ 1.05492 5 5 0 5 92 TCGA-DX-A3LU-01A-11R-A21T-07 ZDHHC17~Nchr6~41324965 intergenic "ZDHHC17," "-," chr12~chr6 77158109 41324965 13 ++ 0.687092 13 2 11 13 20 TCGA-DX-A3LU-01A-11R-A21T-07 ZDHHC17~RP11-54A9.1 fusion "ZDHHC17," "RP11-54A9.1," chr12~chr12 77158109 76685896 8 ++ 0.900256 7 7 0 7 10 TCGA-DX-A3LU-01A-11R-A21T-07 ZNF318~CD2AP fusion "ZNF318," "CD2AP," chr6~chr6 43336705 47548600 127 -+ 2.38046 105 2 103 105 312 TCGA-DX-A3LW-01A-21R-A21T-07 CD63~Nchr12~55828915 intergenic "CD63," "-," chr12~chr12 56122060 55828915 5 -- 0.950271 5 5 0 5 156 TCGA-DX-A3LW-01A-21R-A21T-07 CD63~Nchr12~58632033 intergenic "CD63," "-," chr12~chr12 56122060 58632033 4 -+ 0.693147 4 2 2 4 216 TCGA-DX-A3LW-01A-21R-A21T-07 CD63~Nchr12~58635957 intergenic "CD63," "-," chr12~chr12 56122060 58635957 95 -+ 2.77205 30 18 12 30 186 TCGA-DX-A3LW-01A-21R-A21T-07 CD63~Nchr4~25908456 intergenic "CD63," "-," chr12~chr4 56122737 25908456 9 -- 1.522955 3 0 3 3 34 TCGA-DX-A3LW-01A-21R-A21T-07 CD63~Nchr4~25908456 intergenic "CD63," "-," chr12~chr4 56122060 25908456 103 -- 2.493439 51 14 37 51 160 TCGA-DX-A3LW-01A-21R-A21T-07 CD63~RP11-362K2.2 fusion "CD63," "RP11-362K2.2," chr12~chr12 56122060 59063339 8 -+ 1.213008 6 6 0 6 8 TCGA-DX-A3LW-01A-21R-A21T-07 CDK2~PAN2 fusion "CDK2," "PAN2," chr12~chr12 56363360 56719238 9 +- 1.14906 8 2 6 8 16 TCGA-DX-A3LW-01A-21R-A21T-07 CNOT2~ANO6 fusion "CNOT2," "ANO6," chr12~chr12 70704797 45761471 4 ++ 0.693147 4 4 0 4 2 TCGA-DX-A3LW-01A-21R-A21T-07 DIP2B~Nchr4~29067474 intergenic "DIP2B," "-," chr12~chr4 50899023 29067474 40 +- 2.36418 39 4 35 39 116 TCGA-DX-A3LW-01A-21R-A21T-07 DIP2B~Nchr4~32789169 intergenic "DIP2B," "-," chr12~chr4 51123389 32789169 31 ++ 1.949168 29 28 1 29 198 TCGA-DX-A3LW-01A-21R-A21T-07 FBXW7~Nchr1~5302071 intergenic "FBXW7," "-," chr4~chr1 153258954 5302071 24 -+ 2.058769 18 0 18 18 2 TCGA-DX-A3LW-01A-21R-A21T-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 121 -- 2.464692 121 120 1 121 62 TCGA-DX-A3LW-01A-21R-A21T-07 HMGA2~Nchr4~26068433 intergenic "HMGA2," "-," chr12~chr4 66232349 26068433 397 +- 3.199239 393 159 230 393 1412 TCGA-DX-A3LW-01A-21R-A21T-07 HMGA2~Nchr4~26074934 intergenic "HMGA2," "-," chr12~chr4 66232349 26074934 8 +- 1.886697 10 1 7 10 688 TCGA-DX-A3LW-01A-21R-A21T-07 IKZF4~Nchr12~55632659 intergenic "IKZF4," "-," chr12~chr12 56421731 55632659 71 +- 2.781466 70 33 37 70 204 TCGA-DX-A3LW-01A-21R-A21T-07 INTS7~CENPF fusion "INTS7," "CENPF," chr1~chr1 212115312 214836934 2 -+ 0.693147 2 1 1 2 6 TCGA-DX-A3LW-01A-21R-A21T-07 LIN9~Nchr12~64974607 intergenic "LIN9," "-," chr1~chr12 226465476 64974607 13 -- 1.524707 11 7 4 11 94 TCGA-DX-A3LW-01A-21R-A21T-07 LIN9~Nchr12~64974607 intergenic "LIN9," "-," chr1~chr12 226455658 64974607 64 -- 2.847355 57 32 24 57 284 TCGA-DX-A3LW-01A-21R-A21T-07 LIN9~Nchr12~64976780 intergenic "LIN9," "-," chr1~chr12 226455658 64976780 7 -- 1.213008 8 0 7 8 264 TCGA-DX-A3LW-01A-21R-A21T-07 MTAP~Nchr9~25422695 intergenic "MTAP," "-," chr9~chr9 21818201 25422695 12 +- 1.473502 12 9 3 12 40 TCGA-DX-A3LW-01A-21R-A21T-07 MTAP~Nchr9~25478363 intergenic "MTAP," "-," chr9~chr9 21818201 25478363 10 +- 1.695743 10 10 0 10 44 TCGA-DX-A3LW-01A-21R-A21T-07 NFIC~Nchr19~7771380 intergenic "NFIC," "-," chr19~chr19 3382241 7771380 15 +- 1.714088 12 2 10 12 14 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 82 -+ 2.567004 34 0 33 34 36 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr12~52241762~C4orf52 intergenic "-," "C4orf52," chr12~chr4 52241762 25929935 7 ++ 1.153742 5 1 4 5 12 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr12~52242324~C4orf52 intergenic "-," "C4orf52," chr12~chr4 52242324 25929935 21 -+ 1.835502 20 0 20 20 54 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr12~55632759~Nchr12~56424171 intergenic "-," "-," chr12~chr12 55632759 56424171 17 +- 2.033662 17 11 6 17 44 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr12~56040798~Nchr12~58632033 intergenic "-," "-," chr12~chr12 56040798 58632033 7 ++ 0.9557 6 5 1 6 10 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr12~56040862~Nchr12~58632033 intergenic "-," "-," chr12~chr12 56040862 58632033 6 ++ 0.450561 6 1 5 6 16 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr12~56040926~Nchr12~58632033 intergenic "-," "-," chr12~chr12 56040926 58632033 7 ++ 1.735126 7 2 3 7 22 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr12~56660507~LRP1 intergenic "-," "LRP1," chr12~chr12 56660507 57605710 4 -+ 0.693147 4 0 4 4 8 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr12~58631524~Nchr4~32168185 intergenic "-," "-," chr12~chr4 58631524 32168185 91 -- 3.022943 91 39 50 91 266 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr12~58636086~Nchr12~55979255 intergenic "-," "-," chr12~chr12 58636086 55979255 28 +- 2.483974 8 1 7 8 22 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr12~58636086~Nchr12~56028403 intergenic "-," "-," chr12~chr12 58636086 56028403 24 +- 2.160881 12 8 4 12 22 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr12~58636086~Nchr12~56033100 intergenic "-," "-," chr12~chr12 58636086 56033100 164 +- 2.953185 99 51 45 99 436 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr12~58636086~OR6C68 intergenic "-," "OR6C68," chr12~chr12 58636086 55886942 7 +- 1.153742 1 0 1 1 20 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr12~58636086~RP11-362K2.2 intergenic "-," "RP11-362K2.2," chr12~chr12 58636086 58950544 24 ++ 2.556827 5 5 0 5 20 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr14~45066112~Nchr14~44862941 intergenic "-," "-," chr14~chr14 45066112 44862941 10 -- 1.168282 2 2 0 2 10 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr14~45267133~Nchr14~44862941 intergenic "-," "-," chr14~chr14 45267133 44862941 6 -- 1.329661 5 3 2 5 26 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr14~45267133~Nchr14~45066216 intergenic "-," "-," chr14~chr14 45267133 45066216 11 -- 1.240684 2 1 1 2 6 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 5 ++ 1.05492 5 0 5 5 10 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr19~20655992~NDUFA7 intergenic "-," "NDUFA7," chr19~chr19 20655992 8376479 15 +- 1.714088 14 9 5 14 18 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 15 -+ 1.767009 15 10 5 15 370 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 7 ++ 1.351784 4 4 0 4 12 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr2~174398067~Nchr2~174626307 intergenic "-," "-," chr2~chr2 174398067 174626307 8 ++ 1.559581 8 2 6 8 30 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr4~25906819~Nchr12~58635957 intergenic "-," "-," chr4~chr12 25906819 58635957 8 -+ 1.213008 5 0 5 5 16 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr4~25908302~Nchr12~55828915 intergenic "-," "-," chr4~chr12 25908302 55828915 4 -- 1.039721 1 1 0 1 58 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr4~25908302~Nchr12~55979255 intergenic "-," "-," chr4~chr12 25908302 55979255 28 -- 2.342634 5 0 5 5 10 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr4~25908302~Nchr12~58515955 intergenic "-," "-," chr4~chr12 25908302 58515955 8 -+ 1.073543 6 1 5 6 8 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr4~25908302~Nchr12~58632033 intergenic "-," "-," chr4~chr12 25908302 58632033 5 -+ 1.332179 3 1 2 3 52 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr4~25908302~Nchr12~58635957 intergenic "-," "-," chr4~chr12 25908302 58635957 38 -+ 2.481415 6 3 3 6 44 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr4~25908302~OR6C68 intergenic "-," "OR6C68," chr4~chr12 25908302 55886942 30 -- 2.482213 12 4 8 12 44 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr7~130546961~Nchr7~130623999 intergenic "-," "-," chr7~chr7 130546961 130623999 3 ++ 0.636514 3 2 1 3 20 TCGA-DX-A3LW-01A-21R-A21T-07 Nchr7~56359094~Nchr12~63656494 intergenic "-," "-," chr7~chr12 56359094 63656494 3 +- 1.098612 2 0 2 2 2 TCGA-DX-A3LW-01A-21R-A21T-07 OS9~Nchr12~65046333 intergenic "OS9,OS9," "-," chr12~chr12 58088106 65046333 24 +- 2.224412 19 14 5 19 28 TCGA-DX-A3LW-01A-21R-A21T-07 OS9~RP11-338E21.1 fusion "OS9,OS9," "RP11-338E21.1," chr12~chr12 58088106 64992996 27 +- 1.758737 25 22 3 25 94 TCGA-DX-A3LW-01A-21R-A21T-07 PCDH7~Nchr4~29224811 intergenic "PCDH7," "-," chr4~chr4 30921967 29224811 4 +- 0.562335 3 0 3 3 8 TCGA-DX-A3LW-01A-21R-A21T-07 PCDH7~Nchr4~29247804 intergenic "PCDH7," "-," chr4~chr4 30921991 29247804 14 +- 1.965237 8 5 3 8 10 TCGA-DX-A3LW-01A-21R-A21T-07 PCDH7~Nchr4~29255634 intergenic "PCDH7," "-," chr4~chr4 30921991 29255634 9 +- 0.848686 9 9 0 9 52 TCGA-DX-A3LW-01A-21R-A21T-07 RBM39~CRYZL1 fusion "RBM39," "CRYZL1," chr20~chr21 34304662 34975843 15 -- 2.338372 15 6 9 15 48 TCGA-DX-A3LW-01A-21R-A21T-07 RP11-352M15.1~Nchr12~46120689 intergenic "RP11-352M15.1," "-," chr12~chr12 45912936 46120689 5 ++ 1.332179 5 1 4 5 8 TCGA-DX-A3LW-01A-21R-A21T-07 RP11-644F5.10~CPM fusion "RP11-644F5.10,BLOC1S1," "CPM," chr12~chr12 56109980 69265736 4 +- 0.562335 4 0 4 4 16 TCGA-DX-A3LW-01A-21R-A21T-07 RP11-644F5.10~CPM fusion "RP11-644F5.10,BLOC1S1," "CPM," chr12~chr12 56109980 69279665 2 +- 0.693147 1 1 0 1 64 TCGA-DX-A3LW-01A-21R-A21T-07 RP11-644F5.10~CPM fusion "RP11-644F5.10,BLOC1S1," "CPM," chr12~chr12 56109980 69279669 11 +- 1.84622 2 0 2 2 64 TCGA-DX-A3LW-01A-21R-A21T-07 RP11-644F5.10~CPM fusion "BLOC1S1,RP11-644F5.10,BLOC1S1," "CPM," chr12~chr12 56110789 69279669 18 +- 2.351257 14 7 7 14 84 TCGA-DX-A3LW-01A-21R-A21T-07 SENP1~Nchr4~35663613 intergenic "SENP1," "-," chr12~chr4 48477374 35663613 6 -- 1.329661 6 5 1 6 20 TCGA-DX-A3LW-01A-21R-A21T-07 SHMT2~Nchr12~47928344 intergenic "SHMT2," "-," chr12~chr12 57626075 47928344 3 ++ 1.098612 3 2 1 3 22 TCGA-DX-A3LW-01A-21R-A21T-07 SRSF10~Nchr1~194617302 intergenic "SRSF10," "-," chr1~chr1 24301464 194617302 4 -- 0.562335 3 3 0 3 18 TCGA-DX-A3LW-01A-21R-A21T-07 SRSF10~Nchr1~194623073 intergenic "SRSF10," "-," chr1~chr1 24301464 194623073 16 -- 1.927392 16 7 9 16 56 TCGA-DX-A3LW-01A-21R-A21T-07 SRSF10~Nchr1~194623073 intergenic "SRSF10," "-," chr1~chr1 24306681 194623073 2 -- 0.693147 2 0 2 2 8 TCGA-DX-A3LW-01A-21R-A21T-07 SRSF10~Nchr1~194754788 intergenic "SRSF10," "-," chr1~chr1 24301464 194754788 9 -- 1.889159 6 6 0 6 36 TCGA-DX-A3LW-01A-21R-A21T-07 SWT1~Nchr1~209060188 intergenic "SWT1," "-," chr1~chr1 185183787 209060188 14 ++ 1.450805 14 5 9 14 20 TCGA-DX-A3LW-01A-21R-A21T-07 TPST1~GS1-124K5.4 fusion "TPST1," "GS1-124K5.4," chr7~chr7 65751696 65960242 3 ++ 0.636514 3 2 1 3 26 TCGA-DX-A3LW-01A-21R-A21T-07 YAF2~Nchr12~48987502 intergenic "YAF2," "-," chr12~chr12 42631401 48987502 4 -+ 1.039721 4 3 1 4 8 TCGA-DX-A3LS-01A-11R-A21T-07 ACACB~Nchr12~106016276 intergenic "ACACB," "-," chr12~chr12 109665294 106016276 66 +- 3.145123 65 21 44 65 204 TCGA-DX-A3LS-01A-11R-A21T-07 ACACB~Nchr12~106016276 intergenic "ACACB," "-," chr12~chr12 109661709 106016276 5 +- 1.332179 5 2 3 5 72 TCGA-DX-A3LS-01A-11R-A21T-07 ACTN4~NIPAL2 fusion "ACTN4," "NIPAL2," chr19~chr8 39215205 99205318 5 +- 1.609438 5 2 3 5 724 TCGA-DX-A3LS-01A-11R-A21T-07 ACTN4~NIPAL2 fusion "ACTN4," "NIPAL2," chr19~chr8 39215205 99207050 5 +- 1.153742 7 0 5 7 416 TCGA-DX-A3LS-01A-11R-A21T-07 AGAP2~Nchr12~82191528 intergenic "AGAP2," "-," chr12~chr12 58127809 82191528 4 -- 1.039721 3 3 0 3 12 TCGA-DX-A3LS-01A-11R-A21T-07 ANAPC5~Nchr12~69371801 intergenic "ANAPC5," "-," chr12~chr12 121764899 69371801 6 -- 1.791759 5 2 3 5 24 TCGA-DX-A3LS-01A-11R-A21T-07 ANAPC5~Nchr12~69463787 intergenic "ANAPC5," "-," chr12~chr12 121756080 69463787 8 -- 1.386294 7 5 2 7 96 TCGA-DX-A3LS-01A-11R-A21T-07 ANAPC5~Nchr12~69465962 intergenic "ANAPC5," "-," chr12~chr12 121756080 69465962 64 -- 2.948598 58 29 29 58 140 TCGA-DX-A3LS-01A-11R-A21T-07 APPL2~MAN1A1 fusion "APPL2," "MAN1A1," chr12~chr6 105600839 119623268 10 -- 1.834372 8 5 3 8 22 TCGA-DX-A3LS-01A-11R-A21T-07 APPL2~Nchr12~101911396 intergenic "APPL2," "-," chr12~chr12 105582051 101911396 4 -+ 1.039721 4 4 0 4 70 TCGA-DX-A3LS-01A-11R-A21T-07 APPL2~Nchr12~101911820 intergenic "APPL2," "-," chr12~chr12 105582051 101911820 23 -+ 2.254918 23 11 12 23 686 TCGA-DX-A3LS-01A-11R-A21T-07 APPL2~Nchr12~101920136 intergenic "APPL2," "-," chr12~chr12 105582051 101920136 3 -+ 1.098612 2 2 0 2 338 TCGA-DX-A3LS-01A-11R-A21T-07 APPL2~Nchr12~101922652 intergenic "APPL2," "-," chr12~chr12 105582051 101922652 129 -+ 2.745404 119 60 59 119 536 TCGA-DX-A3LS-01A-11R-A21T-07 APPL2~Nchr12~101926102 intergenic "APPL2," "-," chr12~chr12 105582051 101926102 9 -+ 1.83102 9 5 4 9 336 TCGA-DX-A3LS-01A-11R-A21T-07 APPL2~Nchr12~101927759 intergenic "APPL2," "-," chr12~chr12 105582051 101927759 51 -+ 2.846595 50 22 28 50 194 TCGA-DX-A3LS-01A-11R-A21T-07 APPL2~Nchr12~106136683 intergenic "APPL2," "-," chr12~chr12 105622903 106136683 10 -- 2.163956 10 7 3 10 46 TCGA-DX-A3LS-01A-11R-A21T-07 APPL2~Nchr12~106329222 intergenic "APPL2," "-," chr12~chr12 105622903 106329222 2 -- 0.693147 2 1 1 2 30 TCGA-DX-A3LS-01A-11R-A21T-07 APPL2~Nchr12~106404818 intergenic "APPL2," "-," chr12~chr12 105601749 106404818 13 -- 2.138397 7 5 2 7 34 TCGA-DX-A3LS-01A-11R-A21T-07 APPL2~Nchr12~106404818 intergenic "APPL2," "-," chr12~chr12 105622903 106404818 32 -- 2.550247 17 16 1 17 28 TCGA-DX-A3LS-01A-11R-A21T-07 APPL2~Nchr12~57345013 intergenic "APPL2," "-," chr12~chr12 105597481 57345013 5 -+ 1.05492 5 2 3 5 16 TCGA-DX-A3LS-01A-11R-A21T-07 APPL2~Nchr12~57363180 intergenic "APPL2," "-," chr12~chr12 105597481 57363180 2 -+ 0.693147 2 1 1 2 10 TCGA-DX-A3LS-01A-11R-A21T-07 APPL2~Nchr12~67829296 intergenic "APPL2," "-," chr12~chr12 105582051 67829296 31 -- 2.844487 30 9 21 30 40 TCGA-DX-A3LS-01A-11R-A21T-07 APPL2~Nchr12~89551534 intergenic "APPL2," "-," chr12~chr12 105582051 89551534 3 -+ 0.636514 3 1 2 3 50 TCGA-DX-A3LS-01A-11R-A21T-07 APPL2~Nchr12~89558634 intergenic "APPL2," "-," chr12~chr12 105582051 89558634 50 -+ 2.724679 48 29 19 48 218 TCGA-DX-A3LS-01A-11R-A21T-07 APPL2~Nchr12~90190961 intergenic "APPL2," "-," chr12~chr12 105582051 90190961 18 -- 2.245172 17 12 5 17 60 TCGA-DX-A3LS-01A-11R-A21T-07 APPL2~Nchr12~90209972 intergenic "APPL2," "-," chr12~chr12 105582051 90209972 4 -- 1.039721 4 2 2 4 4 TCGA-DX-A3LS-01A-11R-A21T-07 APPL2~Nchr12~90221705 intergenic "APPL2," "-," chr12~chr12 105582051 90221705 8 -- 1.906155 7 5 2 7 22 TCGA-DX-A3LS-01A-11R-A21T-07 APPL2~Nchr3~13503791 intergenic "APPL2," "-," chr12~chr3 105589039 13503791 6 -- 1.56071 5 1 4 5 20 TCGA-DX-A3LS-01A-11R-A21T-07 APPL2~Nchr3~13506984 intergenic "APPL2," "-," chr12~chr3 105589039 13506984 9 -- 1.609438 10 3 6 10 36 TCGA-DX-A3LS-01A-11R-A21T-07 APPL2~PPFIA2 fusion "APPL2," "PPFIA2," chr12~chr12 105597481 82104999 3 -- 1.098612 3 1 2 3 34 TCGA-DX-A3LS-01A-11R-A21T-07 ARHGAP10~EDNRA fusion "ARHGAP10," "EDNRA," chr4~chr4 148887990 148441003 5 ++ 1.332179 5 4 1 5 4 TCGA-DX-A3LS-01A-11R-A21T-07 ASH2L~CASS4 fusion "ASH2L," "CASS4," chr8~chr20 37991064 55020956 15 ++ 2.430791 14 6 8 14 46 TCGA-DX-A3LS-01A-11R-A21T-07 BRD3~Nchr5~18270402 intergenic "BRD3," "-," chr9~chr5 136910415 18270402 25 -- 2.567046 24 17 7 24 116 TCGA-DX-A3LS-01A-11R-A21T-07 BRPF1~Nchr3~8260055 intergenic "BRPF1," "-," chr3~chr3 9776423 8260055 3 ++ 1.098612 3 2 1 3 8 TCGA-DX-A3LS-01A-11R-A21T-07 BRPF1~Nchr3~8263962 intergenic "BRPF1," "-," chr3~chr3 9776423 8263962 3 ++ 1.098612 2 1 1 2 10 TCGA-DX-A3LS-01A-11R-A21T-07 C12orf28~Nchr12~85382721 intergenic "C12orf28," "-," chr12~chr12 70249150 85382721 18 ++ 2.245172 6 0 6 6 20 TCGA-DX-A3LS-01A-11R-A21T-07 C12orf28~Nchr12~85386349 intergenic "C12orf28," "-," chr12~chr12 70249150 85386349 3 ++ 1.098612 1 0 1 1 4 TCGA-DX-A3LS-01A-11R-A21T-07 C12orf65~EIF4EBP1 fusion "C12orf65,C12orf65," "EIF4EBP1," chr12~chr8 123718078 37914599 176 ++ 2.778035 176 2 170 176 554 TCGA-DX-A3LS-01A-11R-A21T-07 C15orf57~CBX3 fusion "C15orf57," "CBX3," chr15~chr7 40854971 26241389 5 -+ 1.05492 5 3 2 5 14 TCGA-DX-A3LS-01A-11R-A21T-07 C6orf204~CCDC53 fusion "C6orf204," "CCDC53," chr6~chr12 118886692 102439897 23 -- 2.324309 23 9 12 23 52 TCGA-DX-A3LS-01A-11R-A21T-07 C6orf204~CCDC53 fusion "C6orf204," "CCDC53," chr6~chr12 118886692 102455124 17 -- 2.033662 16 10 6 16 74 TCGA-DX-A3LS-01A-11R-A21T-07 C6orf204~CSMD1 fusion "C6orf204," "CSMD1," chr6~chr8 118886692 3076964 3 -- 1.098612 3 2 1 3 6 TCGA-DX-A3LS-01A-11R-A21T-07 C6orf204~JAK2 fusion "C6orf204," "JAK2," chr6~chr9 118886692 4985940 8 -+ 1.906155 7 3 4 7 12 TCGA-DX-A3LS-01A-11R-A21T-07 C6orf204~Nchr12~58284096 intergenic "C6orf204," "-," chr6~chr12 118886692 58284096 4 -+ 1.386294 4 1 3 4 4 TCGA-DX-A3LS-01A-11R-A21T-07 C6orf204~TMEM120B fusion "C6orf204," "TMEM120B," chr6~chr12 118886692 122181535 6 -+ 1.791759 6 3 3 6 14 TCGA-DX-A3LS-01A-11R-A21T-07 C6orf81~ERGIC3 fusion "C6orf81," "ERGIC3," chr6~chr20 35706295 34142815 3 ++ 0.636514 3 3 0 3 12 TCGA-DX-A3LS-01A-11R-A21T-07 CAMKK2~C12orf48 fusion "CAMKK2," "C12orf48,PMCH," chr12~chr12 121734441 102590949 135 -- 2.757415 132 132 0 132 154 TCGA-DX-A3LS-01A-11R-A21T-07 CAMKK2~Nchr12~96492707 intergenic "CAMKK2," "-," chr12~chr12 121734441 96492707 40 -- 2.541048 26 26 0 26 24 TCGA-DX-A3LS-01A-11R-A21T-07 CAMSAP1~LCN8 fusion "CAMSAP1," "LCN8," chr9~chr9 138773479 139651620 11 -- 2.145842 8 5 3 8 8 TCGA-DX-A3LS-01A-11R-A21T-07 CCDC92~MAN1A1 fusion "CCDC92," "MAN1A1," chr12~chr6 124427291 119623268 8 -- 1.559581 5 3 2 5 6 TCGA-DX-A3LS-01A-11R-A21T-07 CCT2~KCNC2 fusion "CCT2," "KCNC2," chr12~chr12 69980124 75437593 21 +- 2.491494 20 16 4 20 78 TCGA-DX-A3LS-01A-11R-A21T-07 CDK2AP1~Nchr12~101911820 intergenic "CDK2AP1," "-," chr12~chr12 123749743 101911820 33 -+ 2.501231 32 11 21 32 206 TCGA-DX-A3LS-01A-11R-A21T-07 CDK2AP1~Nchr12~101920136 intergenic "CDK2AP1," "-," chr12~chr12 123749743 101920136 4 -+ 1.039721 4 3 1 4 172 TCGA-DX-A3LS-01A-11R-A21T-07 CDK2AP1~Nchr12~101926102 intergenic "CDK2AP1," "-," chr12~chr12 123749743 101926102 47 -+ 2.803146 47 30 17 47 166 TCGA-DX-A3LS-01A-11R-A21T-07 CDK2AP1~Nchr12~101927759 intergenic "CDK2AP1," "-," chr12~chr12 123749743 101927759 10 -+ 1.973001 9 5 4 9 74 TCGA-DX-A3LS-01A-11R-A21T-07 CHCHD3~CSMD1 fusion "CHCHD3," "CSMD1," chr7~chr8 132570422 3205683 7 -- 1.549826 2 0 2 2 14 TCGA-DX-A3LS-01A-11R-A21T-07 CHCHD3~Nchr7~127198729 intergenic "CHCHD3," "-," chr7~chr7 132709306 127198729 7 -+ 1.94591 5 3 2 5 4 TCGA-DX-A3LS-01A-11R-A21T-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266103 94037648 3 -+ 1.098612 2 2 0 2 6 TCGA-DX-A3LS-01A-11R-A21T-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272655 94053739 3 -+ 1.098612 3 1 2 3 2 TCGA-DX-A3LS-01A-11R-A21T-07 COL1A1~COL6A2 fusion "COL1A1," "COL6A2," chr17~chr21 48267904 47540975 2 -+ 0.693147 2 2 0 2 2 TCGA-DX-A3LS-01A-11R-A21T-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94037548 48273560 2 +- 0.693147 2 1 1 2 2 TCGA-DX-A3LS-01A-11R-A21T-07 CSMD1~Nchr12~90256215 intergenic "CSMD1," "-," chr8~chr12 3038632 90256215 3 -- 1.098612 3 1 2 3 6 TCGA-DX-A3LS-01A-11R-A21T-07 DAZAP2~Nchr2~203066607 intergenic "DAZAP2," "-," chr12~chr2 51632613 203066607 3 -- 0.636514 3 3 0 3 4 TCGA-DX-A3LS-01A-11R-A21T-07 DRAM1~Nchr12~102331720 intergenic "DRAM1," "-," chr12~chr12 102308010 102331720 4 +- 0.562335 4 4 0 4 18 TCGA-DX-A3LS-01A-11R-A21T-07 DRAM1~Nchr12~73313621 intergenic "DRAM1," "-," chr12~chr12 102308010 73313621 4 ++ 1.039721 4 1 3 4 2 TCGA-DX-A3LS-01A-11R-A21T-07 EDF1~Nchr9~139760751 intergenic "EDF1," "-," chr9~chr9 139758307 139760751 4 +- 1.039721 4 4 0 4 18 TCGA-DX-A3LS-01A-11R-A21T-07 ELK3~Nchr12~122828714 intergenic "ELK3," "-," chr12~chr12 96588483 122828714 9 ++ 1.522955 5 3 2 5 50 TCGA-DX-A3LS-01A-11R-A21T-07 ELK3~Nchr7~134144093 intergenic "ELK3," "-," chr12~chr7 96641512 134144093 17 +- 2.42548 6 0 6 6 2 TCGA-DX-A3LS-01A-11R-A21T-07 ELK3~SBNO1 fusion "ELK3," "SBNO1," chr12~chr12 96588483 123834988 35 +- 2.741011 20 18 2 20 108 TCGA-DX-A3LS-01A-11R-A21T-07 ERBB3~AC023055.2 fusion "ERBB3," "AC023055.2," chr12~chr12 56478965 56228635 2 ++ 0.693147 2 0 2 2 2 TCGA-DX-A3LS-01A-11R-A21T-07 ERBB3~AC023055.2 fusion "ERBB3," "AC023055.2," chr12~chr12 56482652 56228635 12 ++ 2.253858 12 8 4 12 38 TCGA-DX-A3LS-01A-11R-A21T-07 EXOC4~C12orf65 fusion "EXOC4," "C12orf65," chr7~chr12 133502297 123738194 5 ++ 1.609438 4 3 1 4 34 TCGA-DX-A3LS-01A-11R-A21T-07 EXOC4~Nchr7~134144093 intergenic "EXOC4," "-," chr7~chr7 132937943 134144093 48 +- 2.5572 48 1 47 48 294 TCGA-DX-A3LS-01A-11R-A21T-07 FGD5~SLC6A6 fusion "FGD5," "SLC6A6," chr3~chr3 14863103 14526375 8 ++ 1.906155 4 1 3 4 40 TCGA-DX-A3LS-01A-11R-A21T-07 FMNL3~Nchr12~82337132 intergenic "FMNL3," "-," chr12~chr12 50050187 82337132 5 -- 1.609438 3 3 0 3 2 TCGA-DX-A3LS-01A-11R-A21T-07 FRS2~Nchr12~87128414 intergenic "FRS2," "-," chr12~chr12 69956054 87128414 23 ++ 2.136119 20 9 11 20 88 TCGA-DX-A3LS-01A-11R-A21T-07 FRS2~Nchr8~37877211 intergenic "FRS2," "-," chr12~chr8 69931763 37877211 18 +- 2.293119 15 4 11 15 44 TCGA-DX-A3LS-01A-11R-A21T-07 FRS2~Nchr8~37877211 intergenic "FRS2," "-," chr12~chr8 69925836 37877211 3 +- 1.098612 1 1 0 1 22 TCGA-DX-A3LS-01A-11R-A21T-07 FRS2~SBNO1 fusion "FRS2," "SBNO1," chr12~chr12 69864310 123834988 8 +- 1.320888 6 3 3 6 42 TCGA-DX-A3LS-01A-11R-A21T-07 GLIPR1L1~RAB3IP fusion "GLIPR1L1," "RAB3IP," chr12~chr12 75728682 70149164 13 ++ 2.245035 13 6 7 13 16 TCGA-DX-A3LS-01A-11R-A21T-07 GLIS3~TERT fusion "GLIS3," "TERT," chr9~chr5 4117768 1282739 3 -- 0.636514 3 2 1 3 20 TCGA-DX-A3LS-01A-11R-A21T-07 GNPTAB~DRAM1 fusion "GNPTAB," "DRAM1," chr12~chr12 102224404 102291641 14 -+ 1.908535 12 1 11 12 24 TCGA-DX-A3LS-01A-11R-A21T-07 GNPTAB~Nchr12~61846053 intergenic "GNPTAB," "-," chr12~chr12 102150990 61846053 19 -- 2.086769 17 9 8 17 78 TCGA-DX-A3LS-01A-11R-A21T-07 GNPTAB~Nchr12~74843079 intergenic "GNPTAB," "-," chr12~chr12 102150990 74843079 2 -+ 0.693147 1 1 0 1 4 TCGA-DX-A3LS-01A-11R-A21T-07 GNPTAB~Nchr12~75158445 intergenic "GNPTAB," "-," chr12~chr12 102190455 75158445 5 -- 1.332179 1 0 1 1 10 TCGA-DX-A3LS-01A-11R-A21T-07 GNPTAB~Nchr12~75187560 intergenic "GNPTAB," "-," chr12~chr12 102190455 75187560 19 -- 2.305657 17 8 9 17 76 TCGA-DX-A3LS-01A-11R-A21T-07 GNPTAB~Nchr12~84905760 intergenic "GNPTAB," "-," chr12~chr12 102150990 84905760 12 -- 1.907284 4 0 4 4 32 TCGA-DX-A3LS-01A-11R-A21T-07 GNPTAB~Nchr12~84916456 intergenic "GNPTAB," "-," chr12~chr12 102150990 84916456 2 -- 0.693147 2 1 1 2 2 TCGA-DX-A3LS-01A-11R-A21T-07 GNPTAB~Nchr12~84930718 intergenic "GNPTAB," "-," chr12~chr12 102150990 84930718 40 -- 2.604218 41 26 12 41 260 TCGA-DX-A3LS-01A-11R-A21T-07 GNPTAB~Nchr12~84930736 intergenic "GNPTAB," "-," chr12~chr12 102150990 84930736 6 -- 1.011404 6 3 3 6 262 TCGA-DX-A3LS-01A-11R-A21T-07 GOLGA3~Nchr12~89566349 intergenic "GOLGA3," "-," chr12~chr12 133384477 89566349 6 -+ 1.329661 5 2 3 5 10 TCGA-DX-A3LS-01A-11R-A21T-07 HDAC11~CDH18 fusion "HDAC11," "CDH18," chr3~chr5 13522894 19981287 2 +- 0.693147 1 1 0 1 18 TCGA-DX-A3LS-01A-11R-A21T-07 HDAC11~CDH18 fusion "HDAC11," "CDH18," chr3~chr5 13525064 19981287 18 +- 2.447151 18 16 2 18 60 TCGA-DX-A3LS-01A-11R-A21T-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31237743 31322471 2 -- 0.693147 1 0 1 1 68 TCGA-DX-A3LS-01A-11R-A21T-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 446 -- 2.57121 446 445 0 446 296 TCGA-DX-A3LS-01A-11R-A21T-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32487941 32548633 100 -- 2.470347 20 8 12 20 4 TCGA-DX-A3LS-01A-11R-A21T-07 HSPB8~C12orf28 fusion "HSPB8," "AC025263.3,C12orf28," chr12~chr12 119631670 70249060 9 ++ 1.735126 4 1 3 4 4 TCGA-DX-A3LS-01A-11R-A21T-07 HVCN1~GOLGA3 fusion "HVCN1," "GOLGA3," chr12~chr12 111127531 133385135 2 -- 0.693147 2 0 2 2 2 TCGA-DX-A3LS-01A-11R-A21T-07 INPP5E~GLT6D1 fusion "INPP5E," "GLT6D1," chr9~chr9 139333060 138523324 3 -- 1.098612 3 3 0 3 16 TCGA-DX-A3LS-01A-11R-A21T-07 JAK2~KIAA1432 fusion "JAK2," "KIAA1432," chr9~chr9 5029906 5772564 6 ++ 1.56071 6 4 2 6 34 TCGA-DX-A3LS-01A-11R-A21T-07 KDM2B~LRRIQ1 fusion "KDM2B," "LRRIQ1," chr12~chr12 122012452 85638567 62 -+ 2.751021 40 7 33 40 48 TCGA-DX-A3LS-01A-11R-A21T-07 KDM2B~Nchr12~73313621 intergenic "KDM2B," "-," chr12~chr12 122012452 73313621 3 -+ 1.098612 3 2 1 3 12 TCGA-DX-A3LS-01A-11R-A21T-07 LGR5~Nchr12~87725707 intergenic "LGR5," "-," chr12~chr12 71834072 87725707 15 ++ 2.061113 15 6 9 15 106 TCGA-DX-A3LS-01A-11R-A21T-07 LRRC4~LTA4H fusion "LRRC4," "LTA4H," chr7~chr12 127668920 96412681 39 -- 2.861654 37 25 12 37 154 TCGA-DX-A3LS-01A-11R-A21T-07 LRRIQ1~Nchr12~91652336 intergenic "LRRIQ1," "-," chr12~chr12 85638687 91652336 41 +- 1.82757 19 18 1 19 46 TCGA-DX-A3LS-01A-11R-A21T-07 LTA4H~Nchr11~22197716 intergenic "LTA4H,LTA4H," "-," chr12~chr11 96406966 22197716 2 -+ 0.693147 2 0 2 2 2 TCGA-DX-A3LS-01A-11R-A21T-07 LTA4H~Nchr12~89516852 intergenic "LTA4H," "-," chr12~chr12 96402872 89516852 5 -- 1.332179 4 3 1 4 50 TCGA-DX-A3LS-01A-11R-A21T-07 LTA4H~Nchr12~89516852 intergenic "LTA4H,LTA4H," "-," chr12~chr12 96406966 89516852 7 -- 1.351784 6 3 3 6 28 TCGA-DX-A3LS-01A-11R-A21T-07 LTA4H~Nchr12~89569051 intergenic "LTA4H," "-," chr12~chr12 96402872 89569051 115 -- 3.25554 151 36 63 151 594 TCGA-DX-A3LS-01A-11R-A21T-07 LTA4H~Nchr12~89569051 intergenic "LTA4H,LTA4H," "-," chr12~chr12 96406966 89569051 24 -- 2.268016 22 7 15 22 548 TCGA-DX-A3LS-01A-11R-A21T-07 LTA4H~Nchr12~89569125 intergenic "LTA4H," "-," chr12~chr12 96402872 89569125 5 -- 1.332179 5 3 2 5 342 TCGA-DX-A3LS-01A-11R-A21T-07 LTA4H~Nchr12~89594946 intergenic "LTA4H," "-," chr12~chr12 96402872 89594946 103 -- 3.101034 101 22 79 101 362 TCGA-DX-A3LS-01A-11R-A21T-07 LTA4H~Nchr12~89594946 intergenic "LTA4H,LTA4H," "-," chr12~chr12 96406966 89594946 12 -- 2.094729 12 3 9 12 422 TCGA-DX-A3LS-01A-11R-A21T-07 LTA4H~Nchr12~89600785 intergenic "LTA4H,LTA4H," "-," chr12~chr12 96406966 89600785 2 -- 0.693147 2 1 1 2 998 TCGA-DX-A3LS-01A-11R-A21T-07 LTA4H~Nchr12~89600785 intergenic "LTA4H," "-," chr12~chr12 96402872 89600785 428 -- 3.174664 423 214 201 423 1050 TCGA-DX-A3LS-01A-11R-A21T-07 MAN1A1~FMNL3 fusion "MAN1A1," "FMNL3," chr6~chr12 119611848 50055832 8 -- 1.906155 7 4 3 7 18 TCGA-DX-A3LS-01A-11R-A21T-07 MAN1A1~Nchr12~89516852 intergenic "MAN1A1," "-," chr6~chr12 119569425 89516852 5 -- 1.609438 4 2 2 4 20 TCGA-DX-A3LS-01A-11R-A21T-07 MCRS1~SRRM4 fusion "MCRS1," "SRRM4," chr12~chr12 49956784 119594300 18 -+ 2.428274 16 11 5 16 78 TCGA-DX-A3LS-01A-11R-A21T-07 MDM2~AC034193.5 fusion "MDM2," "AC022007.5,AC034193.5," chr12~chr3 69207408 10048491 5 ++ 1.609438 5 5 0 5 8 TCGA-DX-A3LS-01A-11R-A21T-07 MDM2~CPM fusion "MDM2," "CPM," chr12~chr12 69203072 69279669 13 +- 2.242973 10 0 9 10 26 TCGA-DX-A3LS-01A-11R-A21T-07 MDM2~Nchr12~58033372 intergenic "MDM2," "-," chr12~chr12 69214154 58033372 15 ++ 2.245952 14 8 6 14 42 TCGA-DX-A3LS-01A-11R-A21T-07 MDM2~Nchr12~58034016 intergenic "MDM2," "-," chr12~chr12 69214154 58034016 8 ++ 2.043192 8 3 4 8 36 TCGA-DX-A3LS-01A-11R-A21T-07 MDM2~Nchr12~61846053 intergenic "MDM2," "-," chr12~chr12 69207408 61846053 7 +- 1.747868 7 2 5 7 24 TCGA-DX-A3LS-01A-11R-A21T-07 MDM2~Nchr12~69178397 intergenic "MDM2," "-," chr12~chr12 69230529 69178397 4 +- 1.386294 4 4 0 4 16 TCGA-DX-A3LS-01A-11R-A21T-07 MDM2~Nchr12~69199091 intergenic "MDM2," "-," chr12~chr12 69230529 69199091 8 +- 1.732868 8 6 2 8 18 TCGA-DX-A3LS-01A-11R-A21T-07 MDM2~Nchr12~84905760 intergenic "MDM2," "-," chr12~chr12 69207408 84905760 14 +- 2.205598 8 5 3 8 36 TCGA-DX-A3LS-01A-11R-A21T-07 MDM2~Nchr12~84981975 intergenic "MDM2," "-," chr12~chr12 69207408 84981975 2 +- 0.693147 2 1 1 2 34 TCGA-DX-A3LS-01A-11R-A21T-07 MDM2~Nchr12~84990560 intergenic "MDM2," "-," chr12~chr12 69207408 84990560 23 +- 2.618268 26 17 6 26 72 TCGA-DX-A3LS-01A-11R-A21T-07 MDM2~Nchr12~95123387 intergenic "MDM2," "-," chr12~chr12 69222711 95123387 7 ++ 1.277034 6 0 6 6 394 TCGA-DX-A3LS-01A-11R-A21T-07 MDM2~Nchr3~6498196 intergenic "MDM2," "-," chr12~chr3 69230529 6498196 18 +- 2.197225 18 10 8 18 30 TCGA-DX-A3LS-01A-11R-A21T-07 MDM2~Nchr7~134116152 intergenic "MDM2," "-," chr12~chr7 69222711 134116152 3 ++ 0.636514 3 0 3 3 8 TCGA-DX-A3LS-01A-11R-A21T-07 MDM2~Nchr8~36015011 intergenic "MDM2," "-," chr12~chr8 69222711 36015011 106 +- 3.115353 41 39 2 41 2 TCGA-DX-A3LS-01A-11R-A21T-07 MLXIP~ASH2L fusion "MLXIP," "ASH2L," chr12~chr8 122517172 37996334 14 ++ 2.304619 13 4 9 13 188 TCGA-DX-A3LS-01A-11R-A21T-07 MLXIP~Nchr12~71876238 intergenic "MLXIP," "-," chr12~chr12 122517172 71876238 3 +- 1.098612 2 0 2 2 22 TCGA-DX-A3LS-01A-11R-A21T-07 MLXIP~Nchr12~71880142 intergenic "MLXIP," "-," chr12~chr12 122517172 71880142 11 +- 1.720193 11 4 7 11 38 TCGA-DX-A3LS-01A-11R-A21T-07 MLXIP~TSPAN8 fusion "MLXIP," "TSPAN8," chr12~chr12 122517172 71676599 35 +- 2.295494 3 1 2 3 88 TCGA-DX-A3LS-01A-11R-A21T-07 MLXIP~TSPAN8 fusion "MLXIP," "TSPAN8," chr12~chr12 122517172 71835367 10 +- 1.748067 10 5 5 10 66 TCGA-DX-A3LS-01A-11R-A21T-07 NCOA6~LSM1 fusion "NCOA6," "LSM1," chr20~chr8 33356267 38029551 112 -- 2.601226 111 56 54 111 304 TCGA-DX-A3LS-01A-11R-A21T-07 NCOR2~NUP37 fusion "NCOR2," "NUP37," chr12~chr12 124904503 102512361 15 -- 2.395908 15 6 9 15 44 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 78 -+ 2.419228 38 0 38 38 22 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr12~106404753~MAP4K1 intergenic "-," "MAP4K1," chr12~chr19 106404753 39078457 7 -- 1.747868 7 2 5 7 16 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr12~106404753~Nchr12~106130154 intergenic "-," "-," chr12~chr12 106404753 106130154 5 -- 1.609438 3 3 0 3 2 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr12~106404753~Nchr12~106133137 intergenic "-," "-," chr12~chr12 106404753 106133137 3 -- 1.098612 3 3 0 3 4 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr12~106404753~Nchr12~106136683 intergenic "-," "-," chr12~chr12 106404753 106136683 8 -- 1.732868 6 6 0 6 4 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr12~123635264~ARHGEF25 intergenic "-," "AC025165.8,ARHGEF25," chr12~chr12 123635264 58006713 2 -+ 0.693147 2 2 0 2 32 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr12~123635264~ARHGEF25 intergenic "-," "AC025165.8,ARHGEF25," chr12~chr12 123635264 58007047 9 -+ 2.043192 8 8 0 8 42 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr12~123635300~ARHGEF25 intergenic "-," "AC025165.8,ARHGEF25," chr12~chr12 123635300 58006713 17 -+ 2.507026 17 17 0 17 40 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr12~123635300~ARHGEF25 intergenic "-," "AC025165.8,ARHGEF25," chr12~chr12 123635300 58007047 20 -+ 2.276423 19 19 0 19 36 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr12~124062808~Nchr12~87128414 intergenic "-," "-," chr12~chr12 124062808 87128414 16 -+ 2.133382 9 4 5 9 60 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr12~58487168~CTNND2 intergenic "-," "CTNND2," chr12~chr5 58487168 11111010 11 ++ 2.271869 8 6 2 8 52 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr12~73701963~CPM intergenic "-," "CPM," chr12~chr12 73701963 69351458 3 -- 0.636514 3 3 0 3 6 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr12~75292632~CTSZ intergenic "-," "CTSZ,RP4-543J19.8,CTSZ," chr12~chr20 75292632 57572808 3 +- 1.098612 3 0 3 3 6 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr12~75385791~Nchr12~58284096 intergenic "-," "-," chr12~chr12 75385791 58284096 8 ++ 1.732868 7 6 1 7 32 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr12~82336491~AGAP2 intergenic "-," "AGAP2," chr12~chr12 82336491 58129210 7 -- 1.549826 4 2 2 4 4 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr12~84905634~CAND2 intergenic "-," "CAND2," chr12~chr3 84905634 12913235 10 -+ 1.227529 10 0 10 10 42 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr12~84905634~Nchr12~61846053 intergenic "-," "-," chr12~chr12 84905634 61846053 14 -- 1.673118 9 6 3 9 26 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr12~84905634~Nchr3~11950563 intergenic "-," "-," chr12~chr3 84905634 11950563 11 -+ 1.84622 5 3 2 5 2 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr12~85208698~EXOC4 intergenic "-," "EXOC4," chr12~chr7 85208698 133502078 6 ++ 0.867563 5 0 5 5 4 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr12~89489307~PMCH intergenic "-," "PMCH," chr12~chr12 89489307 102591487 2 -- 0.693147 2 1 1 2 26 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr12~96491986~C12orf48 intergenic "-," "C12orf48,PMCH," chr12~chr12 96491986 102590949 44 -- 2.997539 40 5 34 40 98 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr12~96492584~C12orf48 intergenic "-," "C12orf48,PMCH," chr12~chr12 96492584 102590949 12 -- 2.253858 8 1 7 8 46 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr12~96492654~C12orf48 intergenic "-," "C12orf48,PMCH," chr12~chr12 96492654 102590949 4 -- 1.039721 4 0 4 4 6 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr14~106444660~Nchr14~106444858 intergenic "-," "-," chr14~chr14 106444660 106444858 4 -- 1.039721 3 0 3 3 2 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 3 ++ 1.098612 2 1 1 2 10 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 2 -- 0.693147 1 0 1 1 4 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr19~57077310~ZNF71 intergenic "-," "ZNF71," chr19~chr19 57077310 57125180 3 -+ 1.098612 1 0 1 1 24 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 28 -+ 2.595131 26 14 12 26 250 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145013721 2 -+ 0.693147 2 1 1 2 24 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr1~27527442~MAGI2 intergenic "-," "MAGI2," chr1~chr7 27527442 77973125 25 -+ 2.300611 25 25 0 25 88 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr1~27527442~MAGI2 intergenic "-," "MAGI2," chr1~chr7 27527442 78046151 4 -+ 0.693147 4 4 0 4 12 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr20~57619717~CDK17 intergenic "-," "CDK17," chr20~chr12 57619717 96693743 21 -+ 2.491494 5 1 4 5 24 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr3~13503675~AGAP2 intergenic "-," "AGAP2," chr3~chr12 13503675 58129210 3 -- 0.636514 3 3 0 3 6 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr3~151601595~Nchr3~151601701 intergenic "-," "-," chr3~chr3 151601595 151601701 2 -- 0.693147 2 0 2 2 2 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr3~8536367~Nchr8~36858766 intergenic "-," "-," chr3~chr8 8536367 36858766 2 -+ 0.693147 2 1 1 2 8 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr6~114864957~Nchr6~79564203 intergenic "-," "-," chr6~chr6 114864957 79564203 8 -+ 1.320888 6 2 4 6 24 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr6~115526153~Nchr6~115267959 intergenic "-," "-," chr6~chr6 115526153 115267959 5 -- 1.609438 2 1 1 2 2 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr7~140912504~Nchr7~141137408 intergenic "-," "-," chr7~chr7 140912504 141137408 6 ++ 1.56071 5 1 4 5 6 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr8~36014978~Nchr12~95122859 intergenic "-," "-," chr8~chr12 36014978 95122859 9 -+ 1.735126 1 1 0 1 2 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr8~36014978~Nchr12~95123387 intergenic "-," "-," chr8~chr12 36014978 95123387 47 -+ 2.274568 25 25 0 25 2 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr8~49337075~RP11-770E5.1 intergenic "-," "RP11-770E5.1," chr8~chr8 49337075 49607983 2 ++ 0.693147 2 0 2 2 2 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr9~132265951~STXBP1 intergenic "-," "STXBP1," chr9~chr9 132265951 130430359 8 ++ 1.732868 8 3 5 8 20 TCGA-DX-A3LS-01A-11R-A21T-07 Nchr9~19200532~RPS6 intergenic "-," "RPS6," chr9~chr9 19200532 19378478 3 -- 0.636514 3 0 3 3 18 TCGA-DX-A3LS-01A-11R-A21T-07 OS9~C6orf204 fusion "OS9," "C6orf204," chr12~chr6 58090156 118973971 2 +- 0.693147 2 1 1 2 2 TCGA-DX-A3LS-01A-11R-A21T-07 OS9~C6orf204 fusion "OS9," "C6orf204," chr12~chr6 58090156 118983690 8 +- 1.494175 6 3 3 6 40 TCGA-DX-A3LS-01A-11R-A21T-07 OS9~C6orf204 fusion "OS9," "C6orf204," chr12~chr6 58090156 118985684 11 +- 2.253858 9 2 6 9 56 TCGA-DX-A3LS-01A-11R-A21T-07 OS9~C6orf204 fusion "OS9," "C6orf204," chr12~chr6 58090156 118991827 18 +- 2.293119 17 9 8 17 42 TCGA-DX-A3LS-01A-11R-A21T-07 PHF20~C20orf132 fusion "PHF20," "C20orf132," chr20~chr20 34515801 35800460 5 +- 1.332179 5 3 2 5 8 TCGA-DX-A3LS-01A-11R-A21T-07 PITPNM2~ARHGEF25 fusion "PITPNM2," "AC025165.8,ARHGEF25," chr12~chr12 123634323 58006713 5 -+ 1.332179 5 5 0 5 114 TCGA-DX-A3LS-01A-11R-A21T-07 PITPNM2~ARHGEF25 fusion "PITPNM2," "AC025165.8,ARHGEF25," chr12~chr12 123634159 58006713 2 -+ 0.693147 2 1 1 2 128 TCGA-DX-A3LS-01A-11R-A21T-07 PITPNM2~ARHGEF25 fusion "PITPNM2," "AC025165.8,ARHGEF25," chr12~chr12 123634113 58006713 16 -+ 2.339372 15 12 3 15 154 TCGA-DX-A3LS-01A-11R-A21T-07 PITPNM2~ARHGEF25 fusion "PITPNM2," "AC025165.8,ARHGEF25," chr12~chr12 123634323 58007047 6 -+ 1.56071 6 2 4 6 142 TCGA-DX-A3LS-01A-11R-A21T-07 PITPNM2~ARHGEF25 fusion "PITPNM2," "AC025165.8,ARHGEF25," chr12~chr12 123634113 58007047 54 -+ 2.964044 47 24 23 47 290 TCGA-DX-A3LS-01A-11R-A21T-07 PITPNM2~ARHGEF25 fusion "PITPNM2," "AC025165.8,ARHGEF25," chr12~chr12 123634159 58007047 9 -+ 1.522955 9 9 0 9 190 TCGA-DX-A3LS-01A-11R-A21T-07 PPFIA2~Nchr12~114788751 intergenic "PPFIA2," "-," chr12~chr12 82106856 114788751 3 +- 1.098612 3 0 3 3 490 TCGA-DX-A3LS-01A-11R-A21T-07 PPFIA2~Nchr12~86991390 intergenic "PPFIA2," "-," chr12~chr12 82147752 86991390 6 -+ 1.791759 6 2 4 6 40 TCGA-DX-A3LS-01A-11R-A21T-07 PRPF40B~Nchr6~114865085 intergenic "PRPF40B," "-," chr12~chr6 49962506 114865085 3 +- 1.098612 1 1 0 1 4 TCGA-DX-A3LS-01A-11R-A21T-07 RAB3IP~CCDC92 fusion "RAB3IP," "CCDC92," chr12~chr12 70150443 124440991 2 +- 0.693147 2 2 0 2 8 TCGA-DX-A3LS-01A-11R-A21T-07 RAB3IP~Nchr12~89558634 intergenic "RAB3IP," "-," chr12~chr12 70150443 89558634 4 ++ 1.386294 3 1 2 3 28 TCGA-DX-A3LS-01A-11R-A21T-07 RFTN1~Nchr3~20776303 intergenic "RFTN1," "-," chr3~chr3 16475358 20776303 23 -- 2.449734 20 10 10 20 22 TCGA-DX-A3LS-01A-11R-A21T-07 RILPL1~SNRNP35 fusion "RILPL1," "SNRNP35," chr12~chr12 123983091 123942568 8 -+ 1.906155 4 4 0 4 10 TCGA-DX-A3LS-01A-11R-A21T-07 RILPL2~SLC35F1 fusion "RILPL2," "SLC35F1," chr12~chr6 123920629 118588158 4 -+ 1.039721 4 1 3 4 18 TCGA-DX-A3LS-01A-11R-A21T-07 RP11-282O18.3~ATP5E fusion "RP11-282O18.3," "ATP5E," chr12~chr20 123743590 57605484 7 -- 1.94591 6 3 3 6 22 TCGA-DX-A3LS-01A-11R-A21T-07 RP11-474B16.1~CPM fusion "RP11-474B16.1," "CPM," chr12~chr12 105720682 69265736 9 -- 1.522955 9 9 0 9 14 TCGA-DX-A3LS-01A-11R-A21T-07 RP11-546D6.2~ELK3 fusion "MPHOSPH9,RP11-546D6.2,MPHOSPH9,RP11-546D6.2,MPHOSPH9," "ELK3," chr12~chr12 123694603 96640718 14 -+ 1.772139 13 1 12 13 22 TCGA-DX-A3LS-01A-11R-A21T-07 RP11-546D6.2~MDM2 fusion "MPHOSPH9,RP11-546D6.2,MPHOSPH9," "MDM2," chr12~chr12 123686711 69214105 2 -+ 0.693147 2 2 0 2 6 TCGA-DX-A3LS-01A-11R-A21T-07 RP11-546D6.2~Nchr12~85666526 intergenic "MPHOSPH9,RP11-546D6.2,MPHOSPH9,RP11-546D6.2,MPHOSPH9," "-," chr12~chr12 123694603 85666526 7 -+ 1.475076 7 5 2 7 4 TCGA-DX-A3LS-01A-11R-A21T-07 RYR1~Nchr12~79151346 intergenic "RYR1," "-," chr19~chr12 39077216 79151346 20 +- 2.553682 17 7 10 17 56 TCGA-DX-A3LS-01A-11R-A21T-07 SBNO1~C20orf24 fusion "SBNO1," "C20orf24," chr12~chr20 123787371 35236118 3 -+ 1.098612 3 1 2 3 6 TCGA-DX-A3LS-01A-11R-A21T-07 SEC16A~RXRA fusion "SEC16A," "RXRA," chr9~chr9 139353586 137293478 7 -+ 1.94591 7 3 4 7 46 TCGA-DX-A3LS-01A-11R-A21T-07 SEMA5A~TGIF2 fusion "SEMA5A," "TGIF2," chr5~chr20 9545696 35207144 8 -+ 1.906155 7 2 5 7 28 TCGA-DX-A3LS-01A-11R-A21T-07 SLC35E3~Nchr12~123859315 intergenic "SLC35E3," "-," chr12~chr12 69153019 123859315 9 ++ 2.043192 9 9 0 9 42 TCGA-DX-A3LS-01A-11R-A21T-07 SLC35E3~Nchr20~51402167 intergenic "SLC35E3," "-," chr12~chr20 69145970 51402167 6 ++ 1.56071 6 5 1 6 12 TCGA-DX-A3LS-01A-11R-A21T-07 SLC35E3~Nchr5~2193531 intergenic "SLC35E3," "-," chr12~chr5 69145970 2193531 62 ++ 2.80418 61 21 40 61 158 TCGA-DX-A3LS-01A-11R-A21T-07 SND1~Nchr6~107997534 intergenic "SND1," "-," chr7~chr6 127631109 107997534 37 +- 2.472454 16 10 6 16 20 TCGA-DX-A3LS-01A-11R-A21T-07 SNRNP35~Nchr6~115527058 intergenic "SNRNP35," "-," chr12~chr6 123942763 115527058 9 +- 1.735126 3 0 3 3 10 TCGA-DX-A3LS-01A-11R-A21T-07 SNRNP35~Nchr6~115731923 intergenic "SNRNP35," "-," chr12~chr6 123942763 115731923 4 +- 0.693147 4 0 4 4 12 TCGA-DX-A3LS-01A-11R-A21T-07 TMEM120B~Nchr12~89569051 intergenic "TMEM120B," "-," chr12~chr12 122190129 89569051 48 +- 2.649128 47 24 22 47 236 TCGA-DX-A3LS-01A-11R-A21T-07 TMEM120B~Nchr7~127206999 intergenic "TMEM120B," "-," chr12~chr7 122199644 127206999 2 ++ 0.693147 2 0 2 2 6 TCGA-DX-A3LS-01A-11R-A21T-07 TRHDE~C12orf75 fusion "TRHDE," "C12orf75," chr12~chr12 72680734 105789410 22 ++ 2.284167 20 8 12 20 56 TCGA-DX-A3LS-01A-11R-A21T-07 TSC1~RP11-58A17.4 fusion "TSC1," "RP11-58A17.4," chr9~chr12 135810420 58482221 9 -+ 1.735126 6 3 3 6 36 TCGA-DX-A3LS-01A-11R-A21T-07 TSFM~CPM fusion "TSFM," "CPM," chr12~chr12 58186856 69279669 8 +- 1.732868 8 5 3 8 24 TCGA-DX-A3LS-01A-11R-A21T-07 TSFM~Nchr12~75058036 intergenic "TSFM," "-," chr12~chr12 58186856 75058036 11 +- 1.972247 9 4 5 9 26 TCGA-DX-A3LS-01A-11R-A21T-07 TSFM~Nchr12~75058036 intergenic "TSFM," "-," chr12~chr12 58180945 75058036 2 +- 0.693147 2 1 1 2 24 TCGA-DX-A3LS-01A-11R-A21T-07 TSPAN8~ASH2L fusion "TSPAN8," "ASH2L," chr12~chr8 71835248 37996334 4 -+ 0.693147 4 0 4 4 6 TCGA-DX-A3LS-01A-11R-A21T-07 TSPAN8~ASH2L fusion "TSPAN8," "ASH2L," chr12~chr8 71676510 37996334 12 -+ 2.138333 5 0 5 5 74 TCGA-DX-A3LS-01A-11R-A21T-07 TSPAN8~ASH2L fusion "TSPAN8," "ASH2L," chr12~chr8 71676496 37996334 26 -+ 2.60855 17 3 14 17 84 TCGA-DX-A3LS-01A-11R-A21T-07 TSPAN8~Nchr12~75059926 intergenic "TSPAN8," "-," chr12~chr12 71676496 75059926 5 -- 1.609438 1 0 1 1 28 TCGA-DX-A3LS-01A-11R-A21T-07 TSPAN8~Nchr12~75059926 intergenic "TSPAN8," "-," chr12~chr12 71676510 75059926 2 -- 0.693147 1 0 1 1 26 TCGA-DX-A3LS-01A-11R-A21T-07 UHRF1BP1~MDC1 fusion "UHRF1BP1," "MDC1,MDC1-AS1," chr6~chr6 34760071 30680089 15 ++ 2.456143 24 4 10 24 54 TCGA-DX-A3LS-01A-11R-A21T-07 ZNF71~C12orf28 fusion "ZNF71," "AC025263.3,C12orf28," chr19~chr12 57112959 70249060 15 ++ 1.806507 4 0 4 4 18 TCGA-DX-A3LS-01A-11R-A21T-07 ZNF71~HSPB8 fusion "ZNF71," "HSPB8," chr19~chr12 57112959 119624830 22 ++ 2.323397 21 9 12 21 38 TCGA-DX-A2J4-01A-32R-A21T-07 AXL~Nchr12~67514273 intergenic "AXL," "-," chr19~chr12 41744059 67514273 9 +- 1.522955 9 6 3 9 10 TCGA-DX-A2J4-01A-32R-A21T-07 AXL~RP11-123O10.3 fusion "AXL," "RP11-123O10.3," chr19~chr12 41744059 67485408 154 +- 2.944126 140 66 74 140 462 TCGA-DX-A2J4-01A-32R-A21T-07 AXL~RP11-123O10.3 fusion "AXL," "RP11-123O10.3," chr19~chr12 41744059 67488637 9 +- 0.936888 8 7 1 8 306 TCGA-DX-A2J4-01A-32R-A21T-07 CPSF6~C9orf3 fusion "CPSF6," "C9orf3," chr12~chr9 69656342 97848964 3 ++ 0.636514 3 0 3 3 22 TCGA-DX-A2J4-01A-32R-A21T-07 EDF1~Nchr9~139760751 intergenic "EDF1," "-," chr9~chr9 139758307 139760751 3 +- 0.636514 3 1 2 3 36 TCGA-DX-A2J4-01A-32R-A21T-07 FRS2~C12orf66 fusion "FRS2," "C12orf66," chr12~chr12 69864310 64609743 11 +- 1.294545 11 7 4 11 40 TCGA-DX-A2J4-01A-32R-A21T-07 FRS2~Nchr12~78729343 intergenic "FRS2," "-," chr12~chr12 69864310 78729343 12 ++ 1.86368 12 8 4 12 192 TCGA-DX-A2J4-01A-32R-A21T-07 FRS2~Nchr12~78733552 intergenic "FRS2," "-," chr12~chr12 69864310 78733552 14 ++ 1.710493 9 0 9 9 132 TCGA-DX-A2J4-01A-32R-A21T-07 GAS2L3~KRT2 fusion "GAS2L3," "KRT2," chr12~chr12 100995531 53044337 13 +- 1.585771 11 5 6 11 22 TCGA-DX-A2J4-01A-32R-A21T-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 370 -- 2.012182 370 370 0 370 320 TCGA-DX-A2J4-01A-32R-A21T-07 HLA-L~Nchr6~29864828 intergenic "HLA-L," "-," chr6~chr6 30229256 29864828 637 ++ 2.008823 88 85 3 88 6 TCGA-DX-A2J4-01A-32R-A21T-07 IGHV3-9~IGHG1 fusion "IGHV3-9," "IGHG1," chr14~chr14 106552684 106209407 15 -- 1.360514 14 1 13 14 44 TCGA-DX-A2J4-01A-32R-A21T-07 IGKV5-2~AC096579.7 fusion "IGKV5-2," "IGKC,AC096579.7," chr2~chr2 89197212 89157196 10 +- 1.263654 9 2 6 9 132 TCGA-DX-A2J4-01A-32R-A21T-07 LAMA1~L3MBTL4 fusion "LAMA1," "L3MBTL4," chr18~chr18 6980520 6138295 7 -- 1.277034 6 5 1 6 40 TCGA-DX-A2J4-01A-32R-A21T-07 MDM2~Nchr12~98417334 intergenic "MDM2," "-," chr12~chr12 69203072 98417334 100 +- 2.807345 44 44 0 44 48 TCGA-DX-A2J4-01A-32R-A21T-07 MDM2~Nchr18~14918960 intergenic "MDM2," "-," chr12~chr18 69210725 14918960 6 ++ 1.329661 6 3 3 6 34 TCGA-DX-A2J4-01A-32R-A21T-07 MDM2~TSPAN31 fusion "MDM2," "TSPAN31," chr12~chr12 69203072 58140372 362 ++ 3.282865 409 241 103 409 2382 TCGA-DX-A2J4-01A-32R-A21T-07 MDM2~TSPAN31 fusion "MDM2," "TSPAN31," chr12~chr12 69203072 58140376 5 ++ 0.673012 5 5 0 5 2042 TCGA-DX-A2J4-01A-32R-A21T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 109 -+ 2.264494 41 0 41 41 56 TCGA-DX-A2J4-01A-32R-A21T-07 Nchr12~60864021~Nchr12~79096539 intergenic "-," "-," chr12~chr12 60864021 79096539 30 -- 1.55216 16 8 8 16 8 TCGA-DX-A2J4-01A-32R-A21T-07 Nchr12~67824824~KDM4B intergenic "-," "KDM4B," chr12~chr19 67824824 5039155 82 -- 2.619177 84 15 65 84 296 TCGA-DX-A2J4-01A-32R-A21T-07 Nchr19~5469584~Nchr19~11870808 intergenic "-," "-," chr19~chr19 5469584 11870808 3 +- 0.636514 3 2 1 3 18 TCGA-DX-A2J4-01A-32R-A21T-07 Nchr1~147775662~RP11-495P10.6 intergenic "-," "RP11-495P10.6," chr1~chr1 147775662 147744165 11 +- 0.994924 11 0 11 11 44 TCGA-DX-A2J4-01A-32R-A21T-07 Nchr21~17979453~Nchr21~17766974 intergenic "-," "-," chr21~chr21 17979453 17766974 5 ++ 1.05492 5 2 3 5 84 TCGA-DX-A2J4-01A-32R-A21T-07 OS9~Nchr12~84846073 intergenic "OS9," "-," chr12~chr12 58089626 84846073 3 +- 0.636514 2 2 0 2 4 TCGA-DX-A2J4-01A-32R-A21T-07 OS9~Nchr12~84846073 intergenic "OS9," "-," chr12~chr12 58090156 84846073 7 +- 1.549826 4 4 0 4 14 TCGA-DX-A2J4-01A-32R-A21T-07 PPP1R12A~Nchr12~61094270 intergenic "PPP1R12A," "-," chr12~chr12 80266588 61094270 8 -- 1.494175 8 4 4 8 58 TCGA-DX-A2J4-01A-32R-A21T-07 PPP1R12A~Nchr12~61094322 intergenic "PPP1R12A," "-," chr12~chr12 80266588 61094322 25 -- 2.366169 23 19 4 23 64 TCGA-DX-A2J4-01A-32R-A21T-07 PPP1R12A~Nchr12~75185424 intergenic "PPP1R12A," "-," chr12~chr12 80266588 75185424 3 -+ 1.098612 2 1 1 2 24 TCGA-DX-A2J4-01A-32R-A21T-07 RP11-571M6.15~Nchr12~61595221 intergenic "METTL21B,RP11-571M6.15," "-," chr12~chr12 58166911 61595221 3 ++ 0.636514 2 2 0 2 18 TCGA-DX-A2J4-01A-32R-A21T-07 RP11-571M6.15~Nchr12~61596629 intergenic "METTL21B,RP11-571M6.15," "-," chr12~chr12 58166856 61596629 10 ++ 1.332179 10 2 8 10 32 TCGA-DX-A2J4-01A-32R-A21T-07 RP11-571M6.15~Nchr12~61596629 intergenic "METTL21B,RP11-571M6.15," "-," chr12~chr12 58166911 61596629 34 ++ 1.961014 31 11 20 31 52 TCGA-DX-A2J4-01A-32R-A21T-07 RP11-571M6.15~Nchr12~61725019 intergenic "METTL21B,RP11-571M6.15," "-," chr12~chr12 58166911 61725019 5 ++ 1.05492 5 3 2 5 6 TCGA-DX-A2J4-01A-32R-A21T-07 RP11-571M6.15~Nchr12~88344795 intergenic "METTL21B,RP11-571M6.15," "-," chr12~chr12 58166911 88344795 48 +- 2.609932 17 16 1 17 74 TCGA-DX-A2J4-01A-32R-A21T-07 RP11-571M6.15~Nchr12~88344795 intergenic "METTL21B,RP11-571M6.15," "-," chr12~chr12 58166856 88344795 4 +- 1.386294 1 1 0 1 54 TCGA-DX-A2J4-01A-32R-A21T-07 RP11-571M6.15~Nchr12~89410760 intergenic "METTL21B,RP11-571M6.15," "-," chr12~chr12 58166911 89410760 5 ++ 1.05492 5 2 3 5 50 TCGA-DX-A2J4-01A-32R-A21T-07 RP11-571M6.15~Nchr12~89516852 intergenic "METTL21B,RP11-571M6.15," "-," chr12~chr12 58166911 89516852 20 +- 1.864891 14 3 11 14 26 TCGA-DX-A2J4-01A-32R-A21T-07 RPAP3~AVIL fusion "RPAP3," "AVIL," chr12~chr12 48073276 58197452 4 -- 1.039721 4 3 1 4 26 TCGA-DX-A2J4-01A-32R-A21T-07 RPAP3~Nchr12~89759692 intergenic "RPAP3," "-," chr12~chr12 48073276 89759692 45 -+ 2.598424 48 18 27 48 240 TCGA-DX-A2J4-01A-32R-A21T-07 RPAP3~Nchr12~89759692 intergenic "RPAP3," "-," chr12~chr12 48073487 89759692 10 -+ 0.950271 10 0 10 10 86 TCGA-DX-A2J4-01A-32R-A21T-07 RPLP1~Nchr2~177065816 intergenic "RPLP1," "-," chr15~chr2 69747520 177065816 4 ++ 0.562335 4 4 0 4 410 TCGA-DX-A2J4-01A-32R-A21T-07 TPSAB1~Nchr16~1278539 intergenic "TPSAB1," "-," chr16~chr16 1292317 1278539 25 ++ 2.155764 35 2 23 35 82 TCGA-DX-A2J4-01A-32R-A21T-07 TPSAB1~Nchr16~1278554 intergenic "TPSAB1," "-," chr16~chr16 1292317 1278554 10 ++ 1.332179 10 2 8 10 92 TCGA-DX-A2J4-01A-32R-A21T-07 ZNF441~FAM19A2 fusion "ZNF441," "FAM19A2," chr19~chr12 11878011 62148805 7 +- 1.004242 7 4 3 7 6 TCGA-DX-A2J4-01A-32R-A21T-07 ZNF44~C12orf28 fusion "ZNF44," "C12orf28," chr19~chr12 12405507 70346579 39 -+ 2.154743 39 32 7 39 38 TCGA-DX-A2J4-01A-32R-A21T-07 ZNF44~C12orf28 fusion "ZNF44," "C12orf28," chr19~chr12 12385788 70346579 14 -+ 1.673118 14 11 3 14 64 TCGA-DX-A2J4-01A-32R-A21T-07 ZNF44~C12orf28 fusion "ZNF44," "C12orf28," chr19~chr12 12405507 70352029 4 -+ 0.562335 4 4 0 4 8 TCGA-DX-A2J4-01A-32R-A21T-07 ZNF562~DTX3 fusion "ZNF562," "DTX3," chr19~chr12 9785691 57998578 49 -+ 1.995595 49 49 0 49 76 TCGA-DX-A2J4-01A-32R-A21T-07 ZNF562~DTX3 fusion "ZNF562," "DTX3," chr19~chr12 9785308 57998578 13 -+ 1.057905 13 7 6 13 24 TCGA-DX-A2J4-01A-32R-A21T-07 ZNF562~DTX3 fusion "ZNF562," "DTX3," chr19~chr12 9785691 57999973 24 -+ 1.550928 24 24 0 24 52 TCGA-DX-A2J1-01A-11R-A21T-07 ACVRL1~RP11-283I3.1 fusion "ACVRL1," "RP11-283I3.1," chr12~chr12 52301479 303127 6 ++ 1.329661 4 4 0 4 56 TCGA-DX-A2J1-01A-11R-A21T-07 ANO6~Nchr11~82450549 intergenic "ANO6," "-," chr12~chr11 45614485 82450549 14 +- 1.87116 13 8 5 13 288 TCGA-DX-A2J1-01A-11R-A21T-07 ANO6~Nchr11~82450549 intergenic "ANO6," "-," chr12~chr11 45610174 82450549 131 +- 2.91588 132 76 49 132 336 TCGA-DX-A2J1-01A-11R-A21T-07 C12orf28~Nchr12~58785701 intergenic "C12orf28," "-," chr12~chr12 70297624 58785701 10 ++ 0.943348 10 9 1 10 10 TCGA-DX-A2J1-01A-11R-A21T-07 CDK19~LYZ fusion "CDK19," "LYZ," chr6~chr12 110988637 69743888 6 -+ 1.329661 6 4 2 6 16 TCGA-DX-A2J1-01A-11R-A21T-07 CPNE8~Nchr12~56109774 intergenic "CPNE8," "-," chr12~chr12 39170040 56109774 3 -+ 1.098612 3 0 3 3 12 TCGA-DX-A2J1-01A-11R-A21T-07 CPT1A~Nchr11~70289624 intergenic "CPT1A," "-," chr11~chr11 68548108 70289624 2 -- 0.693147 2 1 1 2 10 TCGA-DX-A2J1-01A-11R-A21T-07 CPT1A~Nchr11~70303395 intergenic "CPT1A," "-," chr11~chr11 68548108 70303395 7 -- 1.078992 3 0 3 3 4 TCGA-DX-A2J1-01A-11R-A21T-07 CPT1A~Nchr11~70306632 intergenic "CPT1A," "-," chr11~chr11 68548108 70306632 16 -- 2.282374 17 11 5 17 36 TCGA-DX-A2J1-01A-11R-A21T-07 CPT1A~Nchr12~75879938 intergenic "CPT1A," "-," chr11~chr12 68560783 75879938 11 -- 1.641735 11 6 5 11 44 TCGA-DX-A2J1-01A-11R-A21T-07 CPT1A~Nchr12~75883601 intergenic "CPT1A," "-," chr11~chr12 68560783 75883601 46 -- 2.589822 44 26 18 44 316 TCGA-DX-A2J1-01A-11R-A21T-07 CPT1A~RP11-585P4.5 fusion "CPT1A," "RP11-585P4.5," chr11~chr12 68560783 75878670 46 -- 2.152154 40 25 15 40 226 TCGA-DX-A2J1-01A-11R-A21T-07 CTDSP2~Nchr12~69409219 intergenic "CTDSP2," "-," chr12~chr12 58240155 69409219 248 -+ 3.005555 232 13 219 232 514 TCGA-DX-A2J1-01A-11R-A21T-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 2 +- 0.693147 2 2 0 2 56 TCGA-DX-A2J1-01A-11R-A21T-07 FKBP15~Nchr12~85089259 intergenic "FKBP15,SLC31A2," "-," chr9~chr12 115923978 85089259 11 ++ 1.515708 10 6 4 10 44 TCGA-DX-A2J1-01A-11R-A21T-07 FKBP15~Nchr12~85090818 intergenic "FKBP15,SLC31A2," "-," chr9~chr12 115923978 85090818 19 ++ 1.465871 19 12 7 19 52 TCGA-DX-A2J1-01A-11R-A21T-07 GLIPR1~Nchr12~77863702 intergenic "GLIPR1," "-," chr12~chr12 75889442 77863702 29 +- 1.915155 7 7 0 7 34 TCGA-DX-A2J1-01A-11R-A21T-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 686 -- 2.509874 686 686 0 686 210 TCGA-DX-A2J1-01A-11R-A21T-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32485337 32546740 3 -- 0.636514 2 0 2 2 356 TCGA-DX-A2J1-01A-11R-A21T-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32485831 32546881 3 -- 1.098612 3 1 2 3 16 TCGA-DX-A2J1-01A-11R-A21T-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32487941 32548633 383 -- 2.452145 76 10 65 76 66 TCGA-DX-A2J1-01A-11R-A21T-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 1134 -- 2.567075 618 123 491 618 4 TCGA-DX-A2J1-01A-11R-A21T-07 HMGA2~SARNP fusion "HMGA2," "SARNP," chr12~chr12 66232349 56146624 3 +- 0.636514 3 3 0 3 2138 TCGA-DX-A2J1-01A-11R-A21T-07 MDM2~RP1-34H18.1 fusion "MDM2," "RP1-34H18.1," chr12~chr12 69210725 77965639 12 ++ 1.820076 12 1 11 12 88 TCGA-DX-A2J1-01A-11R-A21T-07 MDM2~RP1-34H18.1 fusion "MDM2," "RP1-34H18.1," chr12~chr12 69207408 77965639 9 ++ 0.683739 9 0 9 9 56 TCGA-DX-A2J1-01A-11R-A21T-07 MGST1~COL27A1 fusion "MGST1," "COL27A1," chr12~chr9 16500644 117044557 11 ++ 1.594167 11 0 11 11 6 TCGA-DX-A2J1-01A-11R-A21T-07 NR4A1~RP11-762I7.5 fusion "NR4A1," "SARNP,RP11-762I7.5,SARNP," chr12~chr12 52437695 56151337 1757 +- 3.243983 1606 992 544 1606 4466 TCGA-DX-A2J1-01A-11R-A21T-07 NUP107~Nchr12~59488501 intergenic "NUP107," "-," chr12~chr12 69107588 59488501 4 +- 1.039721 4 3 1 4 16 TCGA-DX-A2J1-01A-11R-A21T-07 NUP107~RP11-766N7.3 fusion "NUP107," "RP11-766N7.3," chr12~chr12 69107588 65341096 21 ++ 2.070493 8 3 5 8 36 TCGA-DX-A2J1-01A-11R-A21T-07 Nchr11~109701373~Nchr11~104489945 intergenic "-," "-," chr11~chr11 109701373 104489945 8 -- 1.559581 4 4 0 4 94 TCGA-DX-A2J1-01A-11R-A21T-07 Nchr11~109701373~Nchr11~104493593 intergenic "-," "-," chr11~chr11 109701373 104493593 8 -- 2.079442 5 5 0 5 126 TCGA-DX-A2J1-01A-11R-A21T-07 Nchr11~68864878~Nchr12~58284096 intergenic "-," "-," chr11~chr12 68864878 58284096 9 ++ 1.522955 9 1 8 9 8 TCGA-DX-A2J1-01A-11R-A21T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 131 -+ 2.393497 50 0 50 50 74 TCGA-DX-A2J1-01A-11R-A21T-07 Nchr12~52457790~RP11-762I7.5 intergenic "-," "SARNP,RP11-762I7.5,SARNP," chr12~chr12 52457790 56151337 34 +- 2.564185 35 20 12 35 112 TCGA-DX-A2J1-01A-11R-A21T-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 25 -+ 2.108554 21 11 9 21 278 TCGA-DX-A2J1-01A-11R-A21T-07 Nchr6~29897426~HLA-C intergenic "-," "HLA-C," chr6~chr6 29897426 31236803 3 -- 0.636514 2 0 2 2 4 TCGA-DX-A2J1-01A-11R-A21T-07 PPFIA1~Nchr11~107363067 intergenic "PPFIA1," "-," chr11~chr11 70208594 107363067 3 ++ 0.636514 3 1 2 3 78 TCGA-DX-A2J1-01A-11R-A21T-07 PPFIA1~Nchr11~107364670 intergenic "PPFIA1," "-," chr11~chr11 70208594 107364670 7 ++ 1.351784 7 2 5 7 58 TCGA-DX-A2J1-01A-11R-A21T-07 PRDX5~Nchr3~73697612 intergenic "PRDX5," "-," chr11~chr3 64088219 73697612 4 -- 1.039721 4 4 0 4 2326 TCGA-DX-A2J1-01A-11R-A21T-07 RP1-34H18.1~AP003774.1 fusion "RP1-34H18.1," "AP003774.1," chr12~chr11 77966046 64095008 6 +- 1.011404 6 4 2 6 6 TCGA-DX-A2J1-01A-11R-A21T-07 RP1-34H18.1~Nchr11~82378474 intergenic "RP1-34H18.1," "-," chr12~chr11 77966046 82378474 6 ++ 0.693147 3 0 3 3 32 TCGA-DX-A2J1-01A-11R-A21T-07 RP1-34H18.1~RP11-478B9.1 fusion "RP1-34H18.1," "RP11-478B9.1," chr12~chr12 77966046 45496840 13 ++ 1.458319 9 7 2 9 16 TCGA-DX-A2J1-01A-11R-A21T-07 RP11-262A12.1~Nchr11~104489945 intergenic "RP11-262A12.1," "-," chr11~chr11 109693649 104489945 59 -- 2.821533 33 30 3 33 188 TCGA-DX-A2J1-01A-11R-A21T-07 RP11-262A12.1~Nchr11~104493593 intergenic "RP11-262A12.1," "-," chr11~chr11 109693649 104493593 26 -- 2.377812 20 15 5 20 228 TCGA-DX-A2J1-01A-11R-A21T-07 RP11-571M6.15~Nchr12~77690095 intergenic "METTL21B,RP11-571M6.15," "-," chr12~chr12 58166911 77690095 14 ++ 1.103263 12 1 11 12 16 TCGA-DX-A2J1-01A-11R-A21T-07 RP11-571M6.15~Nchr12~77704146 intergenic "METTL21B,RP11-571M6.15," "-," chr12~chr12 58166911 77704146 3 ++ 0.636514 3 2 1 3 8 TCGA-DX-A2J1-01A-11R-A21T-07 RP11-762I7.5~NR4A1 fusion "RP11-762I7.5,ORMDL2," "NR4A1," chr12~chr12 56211896 52437447 43 ++ 2.803946 31 31 0 31 92 TCGA-DX-A2J1-01A-11R-A21T-07 RP11-762I7.5~NR4A1 fusion "RP11-762I7.5,ORMDL2," "NR4A1," chr12~chr12 56211896 52437478 191 ++ 2.901226 102 102 0 102 92 TCGA-DX-A2J1-01A-11R-A21T-07 RP11-762I7.5~NR4A1 fusion "RP11-762I7.5,ORMDL2," "NR4A1," chr12~chr12 56211896 52437586 219 ++ 2.933936 17 17 0 17 40 TCGA-DX-A2J1-01A-11R-A21T-07 RP11-762I7.5~Nchr12~52325538 intergenic "SARNP,RP11-762I7.5,SARNP," "-," chr12~chr12 56194346 52325538 47 -- 2.312853 41 21 20 41 184 TCGA-DX-A2J1-01A-11R-A21T-07 RP11-762I7.5~Nchr12~52325538 intergenic "SARNP,RP11-762I7.5,SARNP," "-," chr12~chr12 56182859 52325538 169 -- 2.746204 152 90 60 152 726 TCGA-DX-A2J1-01A-11R-A21T-07 RP11-762I7.5~Nchr12~52325910 intergenic "SARNP,RP11-762I7.5,SARNP," "-," chr12~chr12 56194346 52325910 5 -- 1.05492 5 3 2 5 194 TCGA-DX-A2J1-01A-11R-A21T-07 RP11-762I7.5~Nchr12~52325910 intergenic "SARNP,RP11-762I7.5,SARNP," "-," chr12~chr12 56182859 52325910 77 -- 2.072831 76 36 40 76 806 TCGA-DX-A2J1-01A-11R-A21T-07 RP11-762I7.5~Nchr12~52326249 intergenic "SARNP,RP11-762I7.5,SARNP," "-," chr12~chr12 56182859 52326249 5 -- 1.05492 5 2 3 5 26 TCGA-DX-A2J1-01A-11R-A21T-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 17 ++ 1.986967 17 14 3 17 72 TCGA-DX-A2J1-01A-11R-A21T-07 SLC31A2~Nchr12~77959512 intergenic "SLC31A2," "-," chr9~chr12 115920073 77959512 11 +- 1.12095 11 7 4 11 14 TCGA-DX-A2J1-01A-11R-A21T-07 SPATS2~ATP5G2 fusion "SPATS2," "ATP5G2," chr12~chr12 49765073 54059212 5 +- 0.950271 5 1 4 5 14 TCGA-DX-A2J1-01A-11R-A21T-07 SPATS2~RP11-886D15.1 fusion "SPATS2," "RP11-886D15.1," chr12~chr11 49761370 104342116 4 +- 1.039721 3 3 0 3 12 TCGA-DX-A2J1-01A-11R-A21T-07 SPATS2~RP11-886D15.1 fusion "SPATS2," "RP11-886D15.1," chr12~chr11 49765073 104405217 65 +- 2.611311 65 52 12 65 164 TCGA-DX-A2J1-01A-11R-A21T-07 SYNE1~RP1-34H18.1 fusion "SYNE1," "RP1-34H18.1," chr6~chr12 152697516 77965639 6 -+ 1.011404 6 4 2 6 6 TCGA-DX-A2J1-01A-11R-A21T-07 TPCN2~Nchr12~58284096 intergenic "TPCN2," "-," chr11~chr12 68851484 58284096 3 ++ 0.636514 3 1 2 3 20 TCGA-DX-A2J1-01A-11R-A21T-07 TPCN2~Nchr12~58284096 intergenic "TPCN2," "-," chr11~chr12 68855834 58284096 7 ++ 0.682908 7 1 6 7 24 TCGA-DX-A2J1-01A-11R-A21T-07 TSFM~Nchr12~59513499 intergenic "TSFM," "-," chr12~chr12 58186856 59513499 11 ++ 1.641735 11 7 4 11 30 TCGA-DX-A2J1-01A-11R-A21T-07 YAP1~CTA-212D2.2 fusion "YAP1," "CTA-212D2.2," chr11~chr6 102033302 135381361 30 ++ 2.367737 26 8 18 26 120 TCGA-DX-A2J1-01A-11R-A21T-07 ZBTB24~BEST3 fusion "ZBTB24," "BEST3," chr6~chr12 109802278 70049593 4 -- 1.039721 4 1 3 4 4 TCGA-DX-A2J1-01A-11R-A21T-07 ZDHHC17~MMP27 fusion "ZDHHC17," "MMP27," chr12~chr11 77158592 102573849 13 +- 2.057898 12 7 5 12 50 TCGA-DX-A2J1-01A-11R-A21T-07 ZDHHC17~MMP27 fusion "ZDHHC17," "MMP27," chr12~chr11 77158109 102573849 11 +- 1.720193 11 10 1 11 44 TCGA-DX-A2J1-01A-11R-A21T-07 ZNF883~Nchr11~104489945 intergenic "ZNF883," "-," chr9~chr11 115764274 104489945 62 -- 2.774451 60 42 18 60 690 TCGA-DX-A2J1-01A-11R-A21T-07 ZNF883~Nchr11~104493593 intergenic "ZNF883," "-," chr9~chr11 115764274 104493593 20 -- 2.055845 19 19 0 19 828 TCGA-DX-A2J1-01A-11R-A21T-07 ZNF883~Nchr11~109701462 intergenic "ZNF883," "-," chr9~chr11 115764274 109701462 64 -- 2.610655 33 0 33 33 92 TCGA-DX-A2J1-01A-11R-A21T-07 ZNF883~Nchr11~109731111 intergenic "ZNF883," "-," chr9~chr11 115764274 109731111 17 -- 1.691559 17 8 9 17 46 TCGA-DX-A2J1-01A-11R-A21T-07 ZNF883~Nchr11~109735445 intergenic "ZNF883," "-," chr9~chr11 115764274 109735445 243 -- 3.091974 228 75 153 228 1152 TCGA-DX-A2J1-01A-11R-A21T-07 ZNF883~Nchr11~109761377 intergenic "ZNF883," "-," chr9~chr11 115764274 109761377 45 -- 2.407891 37 12 25 37 1162 TCGA-DX-A2J1-01A-11R-A21T-07 ZNF883~Nchr12~77111687 intergenic "ZNF883," "-," chr9~chr12 115764274 77111687 89 -+ 2.49771 86 79 7 86 460 TCGA-DX-A2J1-01A-11R-A21T-07 ZNF883~RP11-262A12.1 fusion "ZNF883," "RP11-262A12.1," chr9~chr11 115764274 109693716 47 -- 2.473617 16 0 16 16 24 TCGA-DX-A2IZ-01A-11R-A21T-07 AHRR~AVIL fusion "AHRR," "AVIL," chr5~chr12 376831 58193703 11 +- 1.84622 9 7 2 9 34 TCGA-DX-A2IZ-01A-11R-A21T-07 APPL2~Nchr12~66482345 intergenic "APPL2," "-," chr12~chr12 105622903 66482345 20 -+ 2.12516 9 1 8 9 48 TCGA-DX-A2IZ-01A-11R-A21T-07 APPL2~Nchr12~66482409 intergenic "APPL2," "-," chr12~chr12 105622903 66482409 32 -+ 2.783207 5 0 5 5 14 TCGA-DX-A2IZ-01A-11R-A21T-07 APPL2~RP11-1060G2.1 fusion "APPL2," "RP11-1060G2.1," chr12~chr12 105622903 94302781 59 -- 2.922911 23 1 22 23 88 TCGA-DX-A2IZ-01A-11R-A21T-07 APPL2~RP11-1060G2.1 fusion "APPL2," "RP11-1060G2.1," chr12~chr12 105622903 94304590 14 -- 1.908535 12 10 2 12 90 TCGA-DX-A2IZ-01A-11R-A21T-07 ATP5B~Nchr5~39607409 intergenic "ATP5B," "-," chr12~chr5 57032890 39607409 4 -- 1.039721 2 1 1 2 2 TCGA-DX-A2IZ-01A-11R-A21T-07 B4GALNT1~Nchr5~18070201 intergenic "B4GALNT1," "-," chr12~chr5 58023935 18070201 33 -- 2.496235 31 10 20 31 150 TCGA-DX-A2IZ-01A-11R-A21T-07 B4GALNT1~Nchr5~18074221 intergenic "B4GALNT1," "-," chr12~chr5 58023935 18074221 26 -- 2.481787 20 14 6 20 74 TCGA-DX-A2IZ-01A-11R-A21T-07 B4GALNT1~Nchr5~18090168 intergenic "B4GALNT1," "-," chr12~chr5 58023935 18090168 22 -- 2.176732 17 3 14 17 208 TCGA-DX-A2IZ-01A-11R-A21T-07 C12orf28~Nchr12~94441738 intergenic "C12orf28," "-," chr12~chr12 70272808 94441738 41 -- 2.615767 29 21 8 29 126 TCGA-DX-A2IZ-01A-11R-A21T-07 C12orf28~Nchr12~94441738 intergenic "C12orf28," "-," chr12~chr12 70284751 94441738 4 -- 1.039721 2 1 1 2 12 TCGA-DX-A2IZ-01A-11R-A21T-07 CCT2~Nchr12~56798880 intergenic "CCT2," "-," chr12~chr12 69986883 56798880 44 +- 2.56224 39 10 29 39 420 TCGA-DX-A2IZ-01A-11R-A21T-07 CDH12~Nchr12~91756115 intergenic "CDH12," "-," chr5~chr12 22505379 91756115 9 -+ 1.522955 2 2 0 2 22 TCGA-DX-A2IZ-01A-11R-A21T-07 CDH12~PMEL fusion "CDH12," "PMEL," chr5~chr12 22775468 56355516 16 -- 2.014036 3 3 0 3 10 TCGA-DX-A2IZ-01A-11R-A21T-07 CEP290~MGAT4C fusion "CEP290," "MGAT4C," chr12~chr12 88502843 86730482 7 -- 1.747868 4 3 1 4 22 TCGA-DX-A2IZ-01A-11R-A21T-07 CEP290~Nchr12~91132767 intergenic "CEP290," "-," chr12~chr12 88514774 91132767 30 -+ 2.753241 26 17 0 26 64 TCGA-DX-A2IZ-01A-11R-A21T-07 CEP290~Nchr12~91134906 intergenic "CEP290," "-," chr12~chr12 88519023 91134906 9 -+ 1.735126 8 3 5 8 396 TCGA-DX-A2IZ-01A-11R-A21T-07 CEP290~Nchr12~91134906 intergenic "CEP290," "-," chr12~chr12 88514774 91134906 370 -+ 3.096119 332 119 211 332 1870 TCGA-DX-A2IZ-01A-11R-A21T-07 CHPT1~TXNRD1 fusion "CHPT1," "TXNRD1," chr12~chr12 102091912 104707023 9 ++ 2.043192 9 3 6 9 26 TCGA-DX-A2IZ-01A-11R-A21T-07 CHST11~PTPRR fusion "CHST11," "PTPRR," chr12~chr12 104995769 71158558 24 +- 2.484907 14 10 4 14 54 TCGA-DX-A2IZ-01A-11R-A21T-07 CPSF6~C9orf3 fusion "CPSF6," "C9orf3," chr12~chr9 69656342 97848964 5 ++ 1.332179 5 5 0 5 12 TCGA-DX-A2IZ-01A-11R-A21T-07 CPSF6~JAG2 fusion "CPSF6," "JAG2," chr12~chr14 69656342 105607666 4 +- 1.039721 4 3 1 4 6 TCGA-DX-A2IZ-01A-11R-A21T-07 CPSF6~SRSF1 fusion "CPSF6," "SRSF1," chr12~chr17 69656342 56082402 3 +- 0.636514 2 0 2 2 8 TCGA-DX-A2IZ-01A-11R-A21T-07 CTD-2281E23.2~DLGAP2 fusion "CTD-2281E23.2," "DLGAP2," chr8~chr8 1208883 1449532 8 ++ 2.079442 3 1 2 3 24 TCGA-DX-A2IZ-01A-11R-A21T-07 DAB1~DRAM1 fusion "DAB1," "DRAM1," chr1~chr12 58715912 102291641 26 -+ 2.451256 23 9 14 23 58 TCGA-DX-A2IZ-01A-11R-A21T-07 DAB1~Nchr12~74700449 intergenic "DAB1," "-," chr1~chr12 58715912 74700449 7 -- 1.277034 3 0 3 3 12 TCGA-DX-A2IZ-01A-11R-A21T-07 DAB1~RAB3B fusion "DAB1," "RAB3B," chr1~chr1 58715912 52403084 2 -- 0.693147 2 1 1 2 6 TCGA-DX-A2IZ-01A-11R-A21T-07 DAP~ESYT1 fusion "DAP," "ESYT1," chr5~chr12 10748287 56536069 5 -+ 1.332179 4 4 0 4 16 TCGA-DX-A2IZ-01A-11R-A21T-07 DAP~ESYT1 fusion "DAP," "ESYT1," chr5~chr12 10748287 56536362 3 -+ 0.636514 2 1 1 2 12 TCGA-DX-A2IZ-01A-11R-A21T-07 DAP~Nchr12~67328569 intergenic "DAP," "-," chr5~chr12 10748287 67328569 7 -+ 1.747868 7 7 0 7 10 TCGA-DX-A2IZ-01A-11R-A21T-07 DAP~Nchr1~56256977 intergenic "DAP," "-," chr5~chr1 10748287 56256977 10 -- 2.163956 8 6 2 8 90 TCGA-DX-A2IZ-01A-11R-A21T-07 DCTN2~Nchr12~68530015 intergenic "DCTN2," "-," chr12~chr12 57939811 68530015 10 -+ 2.302585 8 5 3 8 66 TCGA-DX-A2IZ-01A-11R-A21T-07 DCTN2~Nchr12~68560730 intergenic "DCTN2," "-," chr12~chr12 57939811 68560730 2 -+ 0.693147 2 1 1 2 50 TCGA-DX-A2IZ-01A-11R-A21T-07 DCTN2~Nchr12~68571744 intergenic "DCTN2," "-," chr12~chr12 57939811 68571744 16 -+ 2.133382 14 8 6 14 70 TCGA-DX-A2IZ-01A-11R-A21T-07 DCTN2~Nchr12~68579050 intergenic "DCTN2," "-," chr12~chr12 57939811 68579050 7 -+ 1.747868 6 4 2 6 22 TCGA-DX-A2IZ-01A-11R-A21T-07 DRAM1~Nchr12~58751972 intergenic "DRAM1," "-," chr12~chr12 102295211 58751972 3 +- 0.636514 2 1 1 2 16 TCGA-DX-A2IZ-01A-11R-A21T-07 DYRK2~RP11-366L20.4 fusion "DYRK2," "RP11-366L20.4," chr12~chr12 68052631 66422479 4 +- 1.039721 4 1 3 4 18 TCGA-DX-A2IZ-01A-11R-A21T-07 EVL~Nchr12~126732900 intergenic "EVL," "-," chr14~chr12 100575625 126732900 11 +- 2.145842 9 5 4 9 30 TCGA-DX-A2IZ-01A-11R-A21T-07 EXOC3~Nchr12~69800940 intergenic "EXOC3," "-," chr5~chr12 447867 69800940 12 ++ 2.098147 11 6 4 11 50 TCGA-DX-A2IZ-01A-11R-A21T-07 FAM134B~Nchr12~127980318 intergenic "FAM134B," "-," chr5~chr12 16565872 127980318 7 -- 1.747868 4 4 0 4 20 TCGA-DX-A2IZ-01A-11R-A21T-07 FAM134B~Nchr12~127983756 intergenic "FAM134B," "-," chr5~chr12 16565872 127983756 3 -- 1.098612 2 1 1 2 34 TCGA-DX-A2IZ-01A-11R-A21T-07 FAM19A2~RP11-745O10.4 fusion "FAM19A2," "TMBIM4,RP11-745O10.4,TMBIM4," chr12~chr12 62147403 66547228 5 -- 1.332179 4 1 3 4 10 TCGA-DX-A2IZ-01A-11R-A21T-07 FBXL7~NRD1 fusion "FBXL7," "NRD1," chr5~chr1 15616181 52299729 21 +- 2.120326 12 12 0 12 142 TCGA-DX-A2IZ-01A-11R-A21T-07 FBXL7~NRD1 fusion "FBXL7," "NRD1," chr5~chr1 15500822 52299842 6 +- 1.011404 6 6 0 6 284 TCGA-DX-A2IZ-01A-11R-A21T-07 FBXL7~NRD1 fusion "FBXL7," "NRD1," chr5~chr1 15616181 52299842 173 +- 3.143331 127 119 8 127 262 TCGA-DX-A2IZ-01A-11R-A21T-07 FBXL7~Nchr14~97663083 intergenic "FBXL7," "-," chr5~chr14 15616181 97663083 6 ++ 1.791759 2 2 0 2 6 TCGA-DX-A2IZ-01A-11R-A21T-07 FRS2~CPM fusion "FRS2," "CPM," chr12~chr12 69864310 69265736 28 +- 2.161672 26 19 7 26 468 TCGA-DX-A2IZ-01A-11R-A21T-07 FRS2~CPM fusion "FRS2," "CPM," chr12~chr12 69864310 69279665 4 +- 1.386294 3 1 2 3 656 TCGA-DX-A2IZ-01A-11R-A21T-07 FRS2~CPM fusion "FRS2," "CPM," chr12~chr12 69874139 69279669 2 +- 0.693147 2 2 0 2 554 TCGA-DX-A2IZ-01A-11R-A21T-07 FRS2~CPM fusion "FRS2," "CPM," chr12~chr12 69864310 69279669 56 +- 3.067002 45 24 21 45 728 TCGA-DX-A2IZ-01A-11R-A21T-07 FRS2~GLI1 fusion "FRS2," "GLI1," chr12~chr12 69864310 57857448 2 ++ 0.693147 2 1 1 2 14 TCGA-DX-A2IZ-01A-11R-A21T-07 FRS2~Nchr5~19181374 intergenic "FRS2," "-," chr12~chr5 69864310 19181374 11 +- 2.271869 5 4 1 5 54 TCGA-DX-A2IZ-01A-11R-A21T-07 GLT8D2~Nchr5~27979353 intergenic "GLT8D2," "-," chr12~chr5 104396913 27979353 17 -- 2.099293 16 8 8 16 34 TCGA-DX-A2IZ-01A-11R-A21T-07 GLT8D2~YY1 fusion "GLT8D2," "YY1," chr12~chr14 104396913 100741035 141 -+ 2.692969 119 60 59 119 358 TCGA-DX-A2IZ-01A-11R-A21T-07 GLT8D2~YY1 fusion "GLT8D2," "YY1," chr12~chr14 104396913 100742827 2 -+ 0.693147 2 0 2 2 288 TCGA-DX-A2IZ-01A-11R-A21T-07 GNPTAB~RP11-611E13.2 fusion "GNPTAB," "RP11-611E13.2," chr12~chr12 102224337 70298199 9 -- 1.522955 9 8 1 9 30 TCGA-DX-A2IZ-01A-11R-A21T-07 GNPTAB~TRHDE fusion "GNPTAB," "TRHDE," chr12~chr12 102224337 72680461 34 -+ 2.296668 29 13 16 29 114 TCGA-DX-A2IZ-01A-11R-A21T-07 HCFC2~STAT2 fusion "HCFC2," "STAT2," chr12~chr12 104461885 56750362 3 +- 1.098612 2 1 1 2 40 TCGA-DX-A2IZ-01A-11R-A21T-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31236793 31321968 2 -- 0.693147 2 1 1 2 242 TCGA-DX-A2IZ-01A-11R-A21T-07 HSP90B1~RP11-293I14.2 fusion "HSP90B1," "TMEM19,RP11-293I14.2,TMEM19," chr12~chr12 104328065 72083371 307 ++ 3.045515 269 133 126 269 962 TCGA-DX-A2IZ-01A-11R-A21T-07 HSP90B1~RP11-293I14.2 fusion "HSP90B1," "RP11-293I14.2,TMEM19," chr12~chr12 104328065 72090216 4 ++ 0.693147 4 0 4 4 294 TCGA-DX-A2IZ-01A-11R-A21T-07 INADL~Nchr5~32966103 intergenic "INADL," "-," chr1~chr5 62516730 32966103 8 +- 1.213008 5 1 4 5 52 TCGA-DX-A2IZ-01A-11R-A21T-07 ITGA7~C12orf28 fusion "ITGA7," "C12orf28," chr12~chr12 56089306 70349143 5 -+ 1.332179 4 2 2 4 12 TCGA-DX-A2IZ-01A-11R-A21T-07 LRP1~Nchr14~98593385 intergenic "LRP1," "-," chr12~chr14 57567763 98593385 468 ++ 3.340907 505 263 143 505 1148 TCGA-DX-A2IZ-01A-11R-A21T-07 LRP1~Nchr14~98593385 intergenic "LRP1," "-," chr12~chr14 57567133 98593385 42 ++ 2.956799 43 19 14 43 200 TCGA-DX-A2IZ-01A-11R-A21T-07 LRP1~Nchr14~98593385 intergenic "LRP1," "-," chr12~chr14 57563090 98593385 3 ++ 1.098612 2 1 1 2 14 TCGA-DX-A2IZ-01A-11R-A21T-07 LRP1~Nchr14~98628783 intergenic "LRP1," "-," chr12~chr14 57567763 98628783 26 ++ 2.462814 24 8 14 24 274 TCGA-DX-A2IZ-01A-11R-A21T-07 LRP1~Nchr14~98628783 intergenic "LRP1," "-," chr12~chr14 57567133 98628783 9 ++ 2.043192 7 2 5 7 56 TCGA-DX-A2IZ-01A-11R-A21T-07 LRRC57~C15orf23 fusion "LRRC57," "C15orf23," chr15~chr15 42838042 40686347 3 -+ 1.098612 3 2 1 3 22 TCGA-DX-A2IZ-01A-11R-A21T-07 MARS~FAM19A2 fusion "MARS," "FAM19A2," chr12~chr12 57884427 62616621 32 +- 2.257614 22 13 9 22 62 TCGA-DX-A2IZ-01A-11R-A21T-07 MARS~Nchr5~10060686 intergenic "MARS," "-," chr12~chr5 57884427 10060686 9 ++ 1.735126 7 2 5 7 18 TCGA-DX-A2IZ-01A-11R-A21T-07 MARS~Nchr5~10060780 intergenic "MARS," "-," chr12~chr5 57884427 10060780 2 ++ 0.693147 2 1 1 2 2 TCGA-DX-A2IZ-01A-11R-A21T-07 MARS~Nchr5~10064339 intergenic "MARS," "-," chr12~chr5 57884427 10064339 5 ++ 1.05492 5 3 2 5 16 TCGA-DX-A2IZ-01A-11R-A21T-07 MBD6~Nchr12~69371801 intergenic "MBD6," "-," chr12~chr12 57918199 69371801 2 +- 0.693147 2 0 2 2 2 TCGA-DX-A2IZ-01A-11R-A21T-07 MBD6~Nchr12~69402010 intergenic "MBD6," "-," chr12~chr12 57918199 69402010 8 +- 1.494175 4 0 4 4 40 TCGA-DX-A2IZ-01A-11R-A21T-07 MBD6~Nchr12~69402709 intergenic "MBD6," "-," chr12~chr12 57918199 69402709 1 +- 0.693147 2 0 1 2 110 TCGA-DX-A2IZ-01A-11R-A21T-07 MBD6~Nchr12~69402737 intergenic "MBD6," "-," chr12~chr12 57918199 69402737 33 +- 2.345642 31 6 24 31 144 TCGA-DX-A2IZ-01A-11R-A21T-07 MBD6~Nchr12~69402737 intergenic "MBD6," "-," chr12~chr12 57917875 69402737 5 +- 1.332179 4 0 4 4 22 TCGA-DX-A2IZ-01A-11R-A21T-07 MBD6~Nchr12~69402737 intergenic "MBD6," "-," chr12~chr12 57918008 69402737 4 +- 1.386294 3 0 3 3 32 TCGA-DX-A2IZ-01A-11R-A21T-07 MBD6~Nchr12~69402891 intergenic "MBD6," "-," chr12~chr12 57918199 69402891 13 +- 2.204785 12 4 8 12 112 TCGA-DX-A2IZ-01A-11R-A21T-07 MBD6~Nchr12~69404100 intergenic "MBD6," "-," chr12~chr12 57918199 69404100 3 +- 1.332179 4 1 1 4 14 TCGA-DX-A2IZ-01A-11R-A21T-07 MYL6B~Nchr12~56859676 intergenic "MYL6B," "-," chr12~chr12 56549376 56859676 17 ++ 1.950409 11 6 5 11 30 TCGA-DX-A2IZ-01A-11R-A21T-07 MYL6~Nchr17~69617455 intergenic "MYL6," "-," chr12~chr17 56554423 69617455 5 ++ 0.950271 2 2 0 2 292 TCGA-DX-A2IZ-01A-11R-A21T-07 MYO10~RP11-762I7.5 fusion "MYO10," "SARNP,RP11-762I7.5,SARNP," chr5~chr12 16935897 56154424 9 -- 2.197225 9 3 6 9 22 TCGA-DX-A2IZ-01A-11R-A21T-07 NDUFS6~Nchr12~127912925 intergenic "NDUFS6," "-," chr5~chr12 1816168 127912925 7 ++ 0.9557 7 7 0 7 30 TCGA-DX-A2IZ-01A-11R-A21T-07 NFYB~Nchr5~39930243 intergenic "NFYB," "-," chr12~chr5 104522202 39930243 3 -- 1.098612 3 2 1 3 48 TCGA-DX-A2IZ-01A-11R-A21T-07 NFYB~RP11-642P15.1 fusion "NFYB," "RP11-642P15.1," chr12~chr12 104522202 104290909 3 -- 0.636514 3 1 2 3 4 TCGA-DX-A2IZ-01A-11R-A21T-07 NRD1~Nchr1~61454360 intergenic "NRD1," "-," chr1~chr1 52266228 61454360 5 -+ 1.609438 5 3 2 5 90 TCGA-DX-A2IZ-01A-11R-A21T-07 NRD1~Nchr1~61454360 intergenic "RP4-657D16.3,NRD1," "-," chr1~chr1 52263921 61454360 26 -+ 2.664532 21 20 1 21 192 TCGA-DX-A2IZ-01A-11R-A21T-07 NT5DC3~PTPRR fusion "NT5DC3," "PTPRR," chr12~chr12 104208715 71158558 6 -- 1.56071 4 1 3 4 8 TCGA-DX-A2IZ-01A-11R-A21T-07 NUP107~Nchr5~18091562 intergenic "NUP107," "-," chr12~chr5 69121826 18091562 16 -- 2.306669 14 9 5 14 36 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 25 -+ 2.335132 9 0 9 9 24 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr12~102270855~SLC5A8 intergenic "-," "SLC5A8," chr12~chr12 102270855 101576693 3 -- 1.098612 3 3 0 3 8 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr12~126732640~WARS intergenic "-," "WARS," chr12~chr14 126732640 100802021 8 -+ 1.906155 5 1 4 5 32 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr12~54155670~C12orf28 intergenic "-," "C12orf28," chr12~chr12 54155670 70272808 9 -+ 1.735126 2 0 2 2 4 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr12~54155856~Nchr12~94441738 intergenic "-," "-," chr12~chr12 54155856 94441738 8 +- 1.732868 7 3 4 7 28 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr12~56859773~MDM1 intergenic "-," "MDM1," chr12~chr12 56859773 68719355 12 +- 1.704551 9 1 8 9 18 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr12~58636086~IL22 intergenic "-," "IL22," chr12~chr12 58636086 68647274 2 +- 0.693147 2 2 0 2 4 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr12~58636086~Nchr12~68658901 intergenic "-," "-," chr12~chr12 58636086 68658901 3 +- 1.098612 1 1 0 1 8 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr12~66482464~RP11-1060G2.1 intergenic "-," "RP11-1060G2.1," chr12~chr12 66482464 94302781 63 +- 2.654977 4 4 0 4 10 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr12~67450337~RAP1B intergenic "-," "RAP1B," chr12~chr12 67450337 69034657 5 +- 1.332179 5 3 2 5 16 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr12~67560086~MUCL1 intergenic "-," "MUCL1," chr12~chr12 67560086 55250554 2 ++ 0.693147 2 2 0 2 14 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr12~67569445~MUCL1 intergenic "-," "MUCL1," chr12~chr12 67569445 55248900 42 ++ 2.596957 38 15 23 38 120 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr12~67569445~MUCL1 intergenic "-," "MUCL1," chr12~chr12 67569445 55250554 3 ++ 1.098612 2 0 2 2 94 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr12~68579724~LGR5 intergenic "-," "LGR5," chr12~chr12 68579724 71960184 7 ++ 1.549826 4 1 3 4 30 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr12~68592508~FRS2 intergenic "-," "FRS2," chr12~chr12 68592508 69965056 29 ++ 2.623491 13 9 4 13 76 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr12~73376290~TMEM132B intergenic "-," "TMEM132B," chr12~chr12 73376290 126030283 2 +- 0.693147 2 1 1 2 10 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr12~74678805~Nchr12~49703375 intergenic "-," "-," chr12~chr12 74678805 49703375 4 -- 1.386294 2 1 1 2 6 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr13~22615523~Nchr13~22848662 intergenic "-," "-," chr13~chr13 22615523 22848662 3 ++ 1.098612 2 2 0 2 2 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr14~72399658~RGS6 intergenic "-," "RGS6," chr14~chr14 72399658 72818803 2 ++ 0.693147 2 2 0 2 34 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr14~95982933~PAN2 intergenic "-," "PAN2," chr14~chr12 95982933 56713805 4 -- 1.039721 2 2 0 2 12 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr14~95982933~PAN2 intergenic "-," "PAN2," chr14~chr12 95982933 56715952 7 -- 1.94591 5 5 0 5 14 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 2 ++ 0.693147 1 0 1 1 10 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr16~85404884~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85404884 85667520 5 ++ 1.609438 5 1 4 5 86 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr16~85404884~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85404884 85682158 13 ++ 2.098147 11 4 7 11 44 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr18~37331293~Nchr18~37115579 intergenic "-," "-," chr18~chr18 37331293 37115579 8 -- 1.494175 3 1 2 3 24 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 11 -+ 2.145842 10 4 6 10 134 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr1~91998069~WDR82 intergenic "-," "WDR82," chr1~chr3 91998069 52289269 2 -- 0.693147 2 0 2 2 6 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr21~17652183~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17652183 17859810 2 ++ 0.693147 2 2 0 2 14 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr21~17882762~Nchr21~17979453 intergenic "-," "-," chr21~chr21 17882762 17979453 4 -- 1.039721 1 1 0 1 66 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr5~19181280~C12orf48 intergenic "-," "C12orf48," chr5~chr12 19181280 102517664 5 -+ 1.05492 1 0 1 1 4 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr5~19181280~DRAM1 intergenic "-," "DRAM1," chr5~chr12 19181280 102405591 4 -+ 1.386294 2 2 0 2 6 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr5~19181280~NUP37 intergenic "-," "NUP37,RP11-554E23.4," chr5~chr12 19181280 102468186 6 -+ 1.56071 2 2 0 2 2 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr5~19181280~Nchr12~102398328 intergenic "-," "-," chr5~chr12 19181280 102398328 5 -+ 0.950271 3 3 0 3 14 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr5~39930022~HCFC2 intergenic "-," "HCFC2," chr5~chr12 39930022 104481764 5 -+ 0.950271 5 1 4 5 30 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr7~122851462~Nchr7~123096679 intergenic "-," "-," chr7~chr7 122851462 123096679 3 ++ 1.098612 3 0 3 3 2 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr7~122851497~Nchr7~123096679 intergenic "-," "-," chr7~chr7 122851497 123096679 12 ++ 1.814308 8 0 8 8 44 TCGA-DX-A2IZ-01A-11R-A21T-07 Nchr9~14531945~NFIB intergenic "-," "NFIB," chr9~chr9 14531945 14307519 5 -- 1.332179 5 3 2 5 50 TCGA-DX-A2IZ-01A-11R-A21T-07 NchrX~64295792~NchrX~64586518 intergenic "-," "-," chrX~chrX 64295792 64586518 4 ++ 0.693147 4 2 2 4 6 TCGA-DX-A2IZ-01A-11R-A21T-07 OR6C76~FRS2 fusion "OR6C76," "FRS2," chr12~chr12 55820103 69965056 6 ++ 1.56071 3 0 3 3 4 TCGA-DX-A2IZ-01A-11R-A21T-07 ORC1~Nchr5~24930828 intergenic "ORC1," "-," chr1~chr5 52847314 24930828 2 -- 0.693147 2 0 2 2 2 TCGA-DX-A2IZ-01A-11R-A21T-07 PAN2~LYZ fusion "PAN2," "LYZ," chr12~chr12 56718365 69743888 2 -+ 0.693147 2 1 1 2 12 TCGA-DX-A2IZ-01A-11R-A21T-07 PAN2~LYZ fusion "PAN2," "LYZ," chr12~chr12 56718078 69743888 4 -+ 1.039721 3 1 2 3 20 TCGA-DX-A2IZ-01A-11R-A21T-07 PLXNC1~CCDC41 fusion "PLXNC1," "CCDC41," chr12~chr12 94659001 94706793 354 +- 2.854512 319 118 199 319 1246 TCGA-DX-A2IZ-01A-11R-A21T-07 PLXNC1~Nchr5~18840335 intergenic "PLXNC1," "-," chr12~chr5 94603480 18840335 14 +- 1.94591 7 5 2 7 28 TCGA-DX-A2IZ-01A-11R-A21T-07 PPP1R13B~Nchr12~55428576 intergenic "PPP1R13B," "-," chr14~chr12 104313636 55428576 8 -- 1.559581 8 8 0 8 370 TCGA-DX-A2IZ-01A-11R-A21T-07 PPP1R13B~WIBG fusion "PPP1R13B," "WIBG," chr14~chr12 104313636 56297264 48 -- 2.462447 39 35 1 39 88 TCGA-DX-A2IZ-01A-11R-A21T-07 PPP2R5C~Nchr12~69579223 intergenic "PPP2R5C," "-," chr14~chr12 102368226 69579223 10 ++ 1.695743 10 7 3 10 34 TCGA-DX-A2IZ-01A-11R-A21T-07 PPP2R5C~Nchr12~69584030 intergenic "PPP2R5C," "-," chr14~chr12 102368226 69584030 9 ++ 1.979205 11 4 4 11 46 TCGA-DX-A2IZ-01A-11R-A21T-07 PPP2R5C~Nchr12~69585235 intergenic "PPP2R5C," "-," chr14~chr12 102368226 69585235 31 ++ 2.455209 28 13 15 28 222 TCGA-DX-A2IZ-01A-11R-A21T-07 PRPF38A~Nchr1~56285919 intergenic "PRPF38A," "-," chr1~chr1 52883776 56285919 2 +- 0.693147 2 2 0 2 14 TCGA-DX-A2IZ-01A-11R-A21T-07 RAB21~MYBPC1 fusion "RAB21," "MYBPC1," chr12~chr12 72149068 102008274 3 ++ 1.098612 3 0 3 3 30 TCGA-DX-A2IZ-01A-11R-A21T-07 RAB21~MYBPC1 fusion "RAB21," "MYBPC1," chr12~chr12 72149068 102023212 8 ++ 1.494175 8 3 5 8 52 TCGA-DX-A2IZ-01A-11R-A21T-07 RAB21~Nchr14~99112564 intergenic "RAB21," "-," chr12~chr14 72149068 99112564 2 +- 0.693147 1 0 1 1 90 TCGA-DX-A2IZ-01A-11R-A21T-07 RAB21~Nchr14~99150641 intergenic "RAB21," "-," chr12~chr14 72149068 99150641 3 +- 1.098612 1 1 0 1 14 TCGA-DX-A2IZ-01A-11R-A21T-07 RAB21~Nchr14~99170433 intergenic "RAB21," "-," chr12~chr14 72149068 99170433 67 +- 2.431143 35 4 31 35 280 TCGA-DX-A2IZ-01A-11R-A21T-07 RAB21~Nchr14~99253120 intergenic "RAB21," "-," chr12~chr14 72149068 99253120 7 +- 1.475076 5 1 4 5 36 TCGA-DX-A2IZ-01A-11R-A21T-07 RAB21~Nchr14~99256538 intergenic "RAB21," "-," chr12~chr14 72149068 99256538 4 +- 1.039721 3 0 3 3 26 TCGA-DX-A2IZ-01A-11R-A21T-07 RAB21~Nchr14~99259952 intergenic "RAB21," "-," chr12~chr14 72149068 99259952 3 +- 0.636514 3 0 3 3 12 TCGA-DX-A2IZ-01A-11R-A21T-07 RAB21~Nchr14~99264214 intergenic "RAB21," "-," chr12~chr14 72149068 99264214 6 +- 1.791759 5 2 3 5 18 TCGA-DX-A2IZ-01A-11R-A21T-07 RAGE~MUCL1 fusion "RAGE," "MUCL1," chr14~chr12 102771299 55248246 7 -+ 1.747868 7 5 2 7 438 TCGA-DX-A2IZ-01A-11R-A21T-07 RAGE~MUCL1 fusion "RAGE," "MUCL1," chr14~chr12 102771299 55248900 107 -+ 2.937328 91 68 23 91 596 TCGA-DX-A2IZ-01A-11R-A21T-07 RAGE~MUCL1 fusion "RAGE," "MUCL1," chr14~chr12 102771299 55250554 86 -+ 3.030051 75 54 21 75 500 TCGA-DX-A2IZ-01A-11R-A21T-07 RAP1B~Nchr12~67447919 intergenic "RAP1B," "-," chr12~chr12 69004823 67447919 8 +- 1.906155 4 2 2 4 102 TCGA-DX-A2IZ-01A-11R-A21T-07 RAP1B~Nchr12~67447919 intergenic "RAP1B," "-," chr12~chr12 69004832 67447919 2 +- 0.693147 1 1 0 1 10 TCGA-DX-A2IZ-01A-11R-A21T-07 RAP1B~Nchr5~39905821 intergenic "RAP1B," "-," chr12~chr5 69004823 39905821 5 +- 1.332179 2 0 2 2 6 TCGA-DX-A2IZ-01A-11R-A21T-07 RAP1B~RP11-123O10.3 fusion "RAP1B," "RP11-123O10.3," chr12~chr12 69004823 67431272 49 +- 2.604636 3 1 2 3 54 TCGA-DX-A2IZ-01A-11R-A21T-07 RP11-150C16.1~Nchr12~73672265 intergenic "RP11-150C16.1," "-," chr12~chr12 59409012 73672265 5 ++ 1.609438 3 1 2 3 2 TCGA-DX-A2IZ-01A-11R-A21T-07 RP11-324P9.1~Nchr12~126403363 intergenic "RP11-324P9.1," "-," chr12~chr12 69611387 126403363 16 -+ 1.85766 12 0 12 12 44 TCGA-DX-A2IZ-01A-11R-A21T-07 RP11-466P24.2~RP11-123O10.3 fusion "RP11-466P24.2," "RP11-123O10.3," chr5~chr12 75470035 67431272 18 -- 2.13524 1 1 0 1 24 TCGA-DX-A2IZ-01A-11R-A21T-07 RP11-611E13.2~NUP107 fusion "RP11-611E13.2," "NUP107," chr12~chr12 70636577 69082742 5 -+ 1.332179 3 1 2 3 8 TCGA-DX-A2IZ-01A-11R-A21T-07 RP11-642P15.1~Nchr5~18844719 intergenic "RP11-642P15.1," "-," chr12~chr5 104283179 18844719 5 -+ 1.609438 3 2 1 3 20 TCGA-DX-A2IZ-01A-11R-A21T-07 RP11-644F5.10~Nchr14~104321360 intergenic "BLOC1S1,RP11-644F5.10,BLOC1S1,RP11-644F5.10,BLOC1S1," "-," chr12~chr14 56113007 104321360 3 +- 0.636514 2 2 0 2 2 TCGA-DX-A2IZ-01A-11R-A21T-07 RP11-762I7.5~NT5DC3 fusion "SARNP,RP11-762I7.5," "NT5DC3," chr12~chr12 56188143 104200707 13 -- 2.098147 5 3 2 5 6 TCGA-DX-A2IZ-01A-11R-A21T-07 SCYL2~Nchr12~94440723 intergenic "SCYL2," "-," chr12~chr12 100676925 94440723 44 ++ 2.712346 33 17 16 33 144 TCGA-DX-A2IZ-01A-11R-A21T-07 SCYL2~Nchr12~94440723 intergenic "SCYL2," "-," chr12~chr12 100661174 94440723 8 ++ 1.494175 6 5 1 6 26 TCGA-DX-A2IZ-01A-11R-A21T-07 SCYL2~Nchr12~94441618 intergenic "SCYL2," "-," chr12~chr12 100676925 94441618 12 ++ 1.86368 6 2 4 6 56 TCGA-DX-A2IZ-01A-11R-A21T-07 SCYL2~RP11-24B21.1 fusion "SCYL2," "RP11-24B21.1," chr12~chr12 100676925 92508896 10 +- 1.886697 8 4 4 8 54 TCGA-DX-A2IZ-01A-11R-A21T-07 SEMA5A~Nchr5~39563499 intergenic "SEMA5A," "-," chr5~chr5 9318484 39563499 9 -+ 1.581094 1 0 1 1 28 TCGA-DX-A2IZ-01A-11R-A21T-07 SLC35E3~TMEM132B fusion "SLC35E3," "TMEM132B," chr12~chr12 69145970 126068397 3 ++ 0.636514 3 2 1 3 8 TCGA-DX-A2IZ-01A-11R-A21T-07 SPRED1~TMCO5B fusion "SPRED1," "TMCO5B," chr15~chr15 38545418 33538814 19 +- 2.305657 19 14 5 19 20 TCGA-DX-A2IZ-01A-11R-A21T-07 SPRYD4~MDM1 fusion "SPRYD4," "MDM1," chr12~chr12 56863187 68717020 4 +- 1.386294 4 3 1 4 22 TCGA-DX-A2IZ-01A-11R-A21T-07 SPRYD4~MDM1 fusion "SPRYD4," "MDM1," chr12~chr12 56863244 68719355 4 +- 0.693147 4 2 2 4 44 TCGA-DX-A2IZ-01A-11R-A21T-07 SPRYD4~MDM1 fusion "SPRYD4," "MDM1," chr12~chr12 56863187 68719355 15 +- 1.986732 14 8 6 14 50 TCGA-DX-A2IZ-01A-11R-A21T-07 STAT2~B4GALNT1 fusion "STAT2," "B4GALNT1," chr12~chr12 56753842 58025916 10 -- 1.834372 8 0 8 8 32 TCGA-DX-A2IZ-01A-11R-A21T-07 STAT2~Nchr12~58031419 intergenic "STAT2," "-," chr12~chr12 56753842 58031419 7 -- 1.475076 5 0 5 5 14 TCGA-DX-A2IZ-01A-11R-A21T-07 STAT2~Nchr12~58050661 intergenic "STAT2," "-," chr12~chr12 56753842 58050661 7 -- 1.475076 7 0 7 7 58 TCGA-DX-A2IZ-01A-11R-A21T-07 STAT2~Nchr12~58064392 intergenic "STAT2," "-," chr12~chr12 56753842 58064392 3 -- 1.098612 3 0 3 3 140 TCGA-DX-A2IZ-01A-11R-A21T-07 STAT2~Nchr12~58702970 intergenic "STAT2," "-," chr12~chr12 56742313 58702970 225 -- 3.342751 315 68 105 315 852 TCGA-DX-A2IZ-01A-11R-A21T-07 STAT2~Nchr12~58705197 intergenic "STAT2," "-," chr12~chr12 56742313 58705197 4 -- 1.332179 5 3 1 5 12 TCGA-DX-A2IZ-01A-11R-A21T-07 STAT2~Nchr12~58705243 intergenic "STAT2," "-," chr12~chr12 56742313 58705243 2 -- 1.039721 3 0 1 3 14 TCGA-DX-A2IZ-01A-11R-A21T-07 TBC1D15~LYZ fusion "TBC1D15," "LYZ," chr12~chr12 72300918 69743888 133 ++ 2.873189 105 39 64 105 638 TCGA-DX-A2IZ-01A-11R-A21T-07 TBC1D15~Nchr5~1560053 intergenic "TBC1D15," "-," chr12~chr5 72233591 1560053 105 ++ 2.967996 103 1 97 103 2 TCGA-DX-A2IZ-01A-11R-A21T-07 TMTC3~CEP290 fusion "TMTC3," "CEP290," chr12~chr12 88542281 88502958 13 +- 2.098147 5 2 3 5 18 TCGA-DX-A2IZ-01A-11R-A21T-07 TMTC3~MGAT4C fusion "TMTC3," "MGAT4C," chr12~chr12 88542281 86730482 2 +- 0.693147 2 2 0 2 22 TCGA-DX-A2IZ-01A-11R-A21T-07 TPT1~Nchr6~144522006 intergenic "TPT1," "-," chr13~chr6 45914301 144522006 6 -- 1.098612 2 2 0 2 64 TCGA-DX-A2IZ-01A-11R-A21T-07 TRAF3~Nchr12~126735429 intergenic "TRAF3," "-," chr14~chr12 103296809 126735429 3 ++ 1.098612 1 0 1 1 68 TCGA-DX-A2IZ-01A-11R-A21T-07 TRAF3~Nchr12~58410870 intergenic "TRAF3," "-," chr14~chr12 103296809 58410870 3 +- 1.098612 3 2 1 3 22 TCGA-DX-A2IZ-01A-11R-A21T-07 TRAF3~Nchr12~58475216 intergenic "TRAF3," "-," chr14~chr12 103296809 58475216 4 +- 1.386294 4 4 0 4 26 TCGA-DX-A2IZ-01A-11R-A21T-07 TRAF3~Nchr12~58496731 intergenic "TRAF3," "-," chr14~chr12 103296809 58496731 7 +- 1.549826 7 6 1 7 14 TCGA-DX-A2IZ-01A-11R-A21T-07 TRAF3~Nchr12~58499512 intergenic "TRAF3," "-," chr14~chr12 103296809 58499512 3 +- 1.098612 3 3 0 3 14 TCGA-DX-A2IZ-01A-11R-A21T-07 TRAF3~Nchr12~58500423 intergenic "TRAF3," "-," chr14~chr12 103296809 58500423 21 +- 2.557508 15 11 4 15 120 TCGA-DX-A2IZ-01A-11R-A21T-07 TRAF3~RP11-620J15.3 fusion "TRAF3," "RP11-620J15.3," chr14~chr12 103244012 58329336 15 +- 2.338372 13 13 0 13 16 TCGA-DX-A2IZ-01A-11R-A21T-07 TRAF3~RP11-620J15.3 fusion "TRAF3," "RP11-620J15.3," chr14~chr12 103296809 58329336 7 +- 1.94591 6 5 1 6 4 TCGA-DX-A2IZ-01A-11R-A21T-07 TRHDE~CTD-2139B15.5 fusion "TRHDE," "CTD-2139B15.5," chr12~chr5 72771901 17369498 5 +- 0.500402 3 0 3 3 10 TCGA-DX-A2IZ-01A-11R-A21T-07 TRHDE~CTD-2139B15.5 fusion "TRHDE," "CTD-2139B15.5," chr12~chr5 72771901 17370530 10 +- 1.834372 8 2 6 8 14 TCGA-DX-A2IZ-01A-11R-A21T-07 TRHDE~TBC1D15 fusion "TRHDE," "TBC1D15," chr12~chr12 72771901 72274249 3 ++ 1.098612 1 1 0 1 12 TCGA-DX-A2IZ-01A-11R-A21T-07 TXNRD1~Nchr12~69162551 intergenic "TXNRD1," "-," chr12~chr12 104720201 69162551 29 +- 3.104074 25 6 17 25 172 TCGA-DX-A2IZ-01A-11R-A21T-07 TXNRD1~Nchr12~69167475 intergenic "TXNRD1," "-," chr12~chr12 104720201 69167475 11 +- 2.019815 8 2 6 8 28 TCGA-DX-A2IZ-01A-11R-A21T-07 YEATS4~AGAP2 fusion "YEATS4," "AGAP2," chr12~chr12 69759664 58127956 11 +- 2.145842 11 5 6 11 64 TCGA-DX-A2IZ-01A-11R-A21T-07 YEATS4~ARHGEF25 fusion "YEATS4," "ARHGEF25," chr12~chr12 69764755 58008114 4 ++ 1.039721 3 2 1 3 20 TCGA-DX-A2IZ-01A-11R-A21T-07 YEATS4~Nchr12~69571521 intergenic "YEATS4," "-," chr12~chr12 69764755 69571521 9 +- 1.676988 9 3 6 9 38 TCGA-DX-A2IZ-01A-11R-A21T-07 YEATS4~Nchr12~69574088 intergenic "YEATS4," "-," chr12~chr12 69764755 69574088 11 +- 2.019815 9 5 4 9 48 TCGA-DX-A2IZ-01A-11R-A21T-07 YEATS4~Nchr12~69579623 intergenic "YEATS4," "-," chr12~chr12 69764755 69579623 17 +- 2.3947 11 5 6 11 52 TCGA-DX-A2IZ-01A-11R-A21T-07 YEATS4~Nchr12~69592096 intergenic "YEATS4," "-," chr12~chr12 69764755 69592096 7 +- 0.9557 6 1 5 6 18 TCGA-DX-A2IZ-01A-11R-A21T-07 YY1~KIAA0748 fusion "YY1," "KIAA0748," chr14~chr12 100706260 55344174 32 +- 2.585673 30 28 2 30 118 TCGA-DX-A2J0-01A-11R-A21T-07 ACSS3~RP11-263K4.5 fusion "ACSS3," "RP11-263K4.5," chr12~chr12 81537026 82875807 49 +- 2.586431 38 15 23 38 288 TCGA-DX-A2J0-01A-11R-A21T-07 ACSS3~RP11-611E13.2 fusion "ACSS3," "RP11-611E13.2," chr12~chr12 81537026 70298199 7 +- 1.747868 5 2 3 5 42 TCGA-DX-A2J0-01A-11R-A21T-07 AIDA~SUSD4 fusion "BROX,AIDA," "SUSD4," chr1~chr1 222886284 223505548 12 +- 1.56071 9 5 4 9 48 TCGA-DX-A2J0-01A-11R-A21T-07 AIDA~SUSD4 fusion "BROX,AIDA," "SUSD4," chr1~chr1 222886284 223532463 4 +- 1.386294 4 3 1 4 60 TCGA-DX-A2J0-01A-11R-A21T-07 BRP44~Nchr12~80451076 intergenic "BRP44," "-," chr1~chr12 167904971 80451076 3 -- 0.636514 2 1 1 2 6 TCGA-DX-A2J0-01A-11R-A21T-07 BRP44~Nchr12~80524773 intergenic "BRP44," "-," chr1~chr12 167904971 80524773 13 -+ 1.524707 8 2 6 8 10 TCGA-DX-A2J0-01A-11R-A21T-07 C12orf26~GALNT9 fusion "C12orf26," "GALNT9," chr12~chr12 82796909 132863016 13 +- 2.273966 14 7 4 14 76 TCGA-DX-A2J0-01A-11R-A21T-07 C12orf42~Nchr12~80974188 intergenic "C12orf42," "-," chr12~chr12 103872127 80974188 54 -- 2.572263 32 26 6 32 64 TCGA-DX-A2J0-01A-11R-A21T-07 C12orf42~Nchr12~80976927 intergenic "C12orf42," "-," chr12~chr12 103872127 80976927 2 -- 0.693147 2 2 0 2 54 TCGA-DX-A2J0-01A-11R-A21T-07 C1orf9~C12orf42 fusion "C1orf9," "C12orf42," chr1~chr12 172502637 103696337 9 +- 1.464816 9 2 7 9 16 TCGA-DX-A2J0-01A-11R-A21T-07 C1orf9~LIN7A fusion "C1orf9," "LIN7A," chr1~chr12 172502637 81205462 5 +- 1.332179 5 2 3 5 4 TCGA-DX-A2J0-01A-11R-A21T-07 C21orf91~GLT25D2 fusion "C21orf91," "GLT25D2," chr21~chr1 19190509 183914698 34 -- 2.310791 22 11 11 22 148 TCGA-DX-A2J0-01A-11R-A21T-07 C21orf91~GLT25D2 fusion "C21orf91," "GLT25D2," chr21~chr1 19190509 183917954 14 -- 2.205598 10 3 7 10 38 TCGA-DX-A2J0-01A-11R-A21T-07 CAST~Nchr5~42974938 intergenic "CAST," "-," chr5~chr5 96011305 42974938 2 +- 0.693147 2 2 0 2 8 TCGA-DX-A2J0-01A-11R-A21T-07 CAST~RP11-454P21.1 fusion "CAST," "RP11-454P21.1," chr5~chr5 96011305 17955803 8 ++ 1.494175 7 5 2 7 36 TCGA-DX-A2J0-01A-11R-A21T-07 CCDC59~KCNMB4 fusion "CCDC59," "KCNMB4," chr12~chr12 82750739 70824265 5 -+ 1.332179 4 2 2 4 22 TCGA-DX-A2J0-01A-11R-A21T-07 CD244~DDR2 fusion "CD244," "DDR2," chr1~chr1 160808241 162711369 10 -+ 1.695743 6 0 6 6 28 TCGA-DX-A2J0-01A-11R-A21T-07 CDK17~RP11-136F16.1 fusion "CDK17," "RP11-136F16.1," chr12~chr12 96793764 78450124 3 -- 1.098612 2 2 0 2 10 TCGA-DX-A2J0-01A-11R-A21T-07 CHD2~RP5-1116C7.1 fusion "CHD2," "RP5-1116C7.1," chr15~chr1 93444529 172113577 6 +- 1.329661 6 4 2 6 10 TCGA-DX-A2J0-01A-11R-A21T-07 CNOT2~Nchr1~172786837 intergenic "CNOT2," "-," chr12~chr1 70704797 172786837 7 +- 1.94591 6 2 4 6 48 TCGA-DX-A2J0-01A-11R-A21T-07 CNOT2~Nchr1~172794329 intergenic "CNOT2," "-," chr12~chr1 70704797 172794329 10 +- 1.695743 10 4 6 10 46 TCGA-DX-A2J0-01A-11R-A21T-07 CNOT2~RP5-1116C7.1 fusion "CNOT2," "RP5-1116C7.1," chr12~chr1 70704797 172113577 2 +- 0.693147 2 0 2 2 14 TCGA-DX-A2J0-01A-11R-A21T-07 CPSF6~C8orf40 fusion "CPSF6," "C8orf40," chr12~chr8 69656342 42401612 3 ++ 0.636514 3 0 3 3 4 TCGA-DX-A2J0-01A-11R-A21T-07 CPSF6~MYF6 fusion "CPSF6," "MYF6," chr12~chr12 69633486 81101634 16 ++ 1.981333 15 0 15 15 60 TCGA-DX-A2J0-01A-11R-A21T-07 CPSF6~Nchr4~6676720 intergenic "CPSF6," "-," chr12~chr4 69656342 6676720 3 ++ 0.636514 2 1 1 2 6 TCGA-DX-A2J0-01A-11R-A21T-07 CPSF6~RP11-611E13.2 fusion "CPSF6," "RP11-611E13.2," chr12~chr12 69656342 70636673 41 +- 2.618553 31 16 15 31 156 TCGA-DX-A2J0-01A-11R-A21T-07 CPSF6~RP11-745O10.4 fusion "CPSF6," "TMBIM4,RP11-745O10.4,TMBIM4," chr12~chr12 69656342 66547228 6 +- 1.56071 5 3 2 5 12 TCGA-DX-A2J0-01A-11R-A21T-07 CPSF6~RP5-1116C7.1 fusion "CPSF6," "RP5-1116C7.1," chr12~chr1 69656342 172113577 9 +- 1.735126 7 4 3 7 18 TCGA-DX-A2J0-01A-11R-A21T-07 CTTNBP2NL~Nchr1~204690367 intergenic "RP4-671G15.2,CTTNBP2NL," "-," chr1~chr1 112958886 204690367 4 +- 1.386294 3 1 2 3 24 TCGA-DX-A2J0-01A-11R-A21T-07 EGLN1~SUSD4 fusion "EGLN1," "SUSD4," chr1~chr1 231556744 223505548 6 -- 1.329661 6 2 4 6 26 TCGA-DX-A2J0-01A-11R-A21T-07 ELK3~CDK17 fusion "RP11-394J1.2,ELK3," "CDK17," chr12~chr12 96617551 96694138 11 +- 1.641735 11 6 5 11 46 TCGA-DX-A2J0-01A-11R-A21T-07 GPR137B~Nchr1~223331130 intergenic "GPR137B," "-," chr1~chr1 236332055 223331130 14 ++ 2.106577 7 2 5 7 18 TCGA-DX-A2J0-01A-11R-A21T-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31237270 31322303 3 -- 0.636514 1 0 1 1 66 TCGA-DX-A2J0-01A-11R-A21T-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 63 -- 2.19848 61 61 0 61 310 TCGA-DX-A2J0-01A-11R-A21T-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32487941 32548633 62 -- 2.542414 10 2 8 10 10 TCGA-DX-A2J0-01A-11R-A21T-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 58 -- 2.06238 58 0 56 58 60 TCGA-DX-A2J0-01A-11R-A21T-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 389 -- 2.574701 174 26 148 174 4 TCGA-DX-A2J0-01A-11R-A21T-07 HMGA2~Nchr12~85793271 intergenic "HMGA2," "-," chr12~chr12 66232349 85793271 2 ++ 0.693147 2 1 1 2 12 TCGA-DX-A2J0-01A-11R-A21T-07 HMGA2~RP5-1116C7.1 fusion "HMGA2," "RP5-1116C7.1," chr12~chr1 66221867 172113577 8 +- 1.494175 7 7 0 7 28 TCGA-DX-A2J0-01A-11R-A21T-07 IFNG~Nchr12~73832466 intergenic "IFNG," "-," chr12~chr12 68552039 73832466 2 ++ 0.693147 1 1 0 1 20 TCGA-DX-A2J0-01A-11R-A21T-07 IRAK3~DYRK2 fusion "IRAK3," "DYRK2," chr12~chr12 66622150 68050886 7 ++ 1.747868 6 3 3 6 2 TCGA-DX-A2J0-01A-11R-A21T-07 IRAK3~Nchr12~68072369 intergenic "IRAK3," "-," chr12~chr12 66605377 68072369 6 ++ 1.791759 5 1 4 5 20 TCGA-DX-A2J0-01A-11R-A21T-07 IRAK3~Nchr12~68947720 intergenic "IRAK3," "-," chr12~chr12 66622150 68947720 2 +- 0.693147 2 0 2 2 32 TCGA-DX-A2J0-01A-11R-A21T-07 IRAK3~Nchr12~68947792 intergenic "IRAK3," "-," chr12~chr12 66622150 68947792 8 +- 2.079442 8 3 5 8 40 TCGA-DX-A2J0-01A-11R-A21T-07 KCNMB4~Nchr1~172809317 intergenic "KCNMB4," "-," chr12~chr1 70794116 172809317 3 ++ 1.098612 3 1 2 3 8 TCGA-DX-A2J0-01A-11R-A21T-07 LGR5~Nchr12~70099784 intergenic "LGR5," "-," chr12~chr12 71834072 70099784 2 +- 0.693147 2 2 0 2 4 TCGA-DX-A2J0-01A-11R-A21T-07 MAGI3~Nchr1~200917220 intergenic "MAGI3," "-," chr1~chr1 114133280 200917220 12 ++ 1.820076 11 9 2 11 20 TCGA-DX-A2J0-01A-11R-A21T-07 MDM1~NAV3 fusion "MDM1," "NAV3," chr12~chr12 68720437 78594253 14 -+ 2.205598 14 10 4 14 32 TCGA-DX-A2J0-01A-11R-A21T-07 MED31~RP5-1116C7.1 fusion "MED31," "RP5-1116C7.1," chr17~chr1 6553302 172113577 9 -- 0.848686 8 3 5 8 2 TCGA-DX-A2J0-01A-11R-A21T-07 MPZL1~RP11-543H12.1 fusion "MPZL1," "RP11-543H12.1," chr1~chr12 167691479 81518292 4 +- 1.386294 4 0 4 4 18 TCGA-DX-A2J0-01A-11R-A21T-07 MPZL1~TNFSF4 fusion "MPZL1," "TNFSF4," chr1~chr1 167745403 173157708 75 +- 2.685344 66 40 25 66 324 TCGA-DX-A2J0-01A-11R-A21T-07 MPZL1~TNFSF4 fusion "MPZL1," "TNFSF4," chr1~chr1 167734986 173157708 8 +- 1.255482 8 7 1 8 6 TCGA-DX-A2J0-01A-11R-A21T-07 NOC4L~Nchr12~74296951 intergenic "NOC4L," "-," chr12~chr12 132633440 74296951 5 +- 1.609438 4 2 2 4 28 TCGA-DX-A2J0-01A-11R-A21T-07 Nchr10~42386991~Nchr12~84062192 intergenic "-," "-," chr10~chr12 42386991 84062192 7 +- 1.747868 3 1 2 3 18 TCGA-DX-A2J0-01A-11R-A21T-07 Nchr11~102166118~PTS intergenic "-," "PTS," chr11~chr11 102166118 112106577 12 -- 1.660947 1 0 1 1 2 TCGA-DX-A2J0-01A-11R-A21T-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 77 -+ 2.345066 22 0 22 22 50 TCGA-DX-A2J0-01A-11R-A21T-07 Nchr12~103957425~Nchr12~80974188 intergenic "-," "-," chr12~chr12 103957425 80974188 3 -- 1.098612 2 1 1 2 40 TCGA-DX-A2J0-01A-11R-A21T-07 Nchr12~58287523~C12orf26 intergenic "-," "C12orf26," chr12~chr12 58287523 82870423 54 -+ 2.974479 47 9 38 47 232 TCGA-DX-A2J0-01A-11R-A21T-07 Nchr12~71388205~PTPRQ intergenic "-," "PTPRQ," chr12~chr12 71388205 80998838 34 ++ 2.565638 46 1 27 46 14 TCGA-DX-A2J0-01A-11R-A21T-07 Nchr12~73711509~IFNG intergenic "-," "IFNG," chr12~chr12 73711509 68552039 13 -- 1.818483 4 4 0 4 10 TCGA-DX-A2J0-01A-11R-A21T-07 Nchr12~81172824~PPFIA2 intergenic "-," "PPFIA2," chr12~chr12 81172824 82070623 5 +- 1.05492 4 4 0 4 2 TCGA-DX-A2J0-01A-11R-A21T-07 Nchr12~82988347~Nchr12~85793271 intergenic "-," "-," chr12~chr12 82988347 85793271 9 -+ 1.427061 6 0 6 6 6 TCGA-DX-A2J0-01A-11R-A21T-07 Nchr14~106444660~Nchr14~106444858 intergenic "-," "-," chr14~chr14 106444660 106444858 4 -- 1.039721 1 0 1 1 2 TCGA-DX-A2J0-01A-11R-A21T-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 25 -+ 2.394159 22 12 9 22 548 TCGA-DX-A2J0-01A-11R-A21T-07 Nchr1~16939833~Nchr1~117356355 intergenic "-," "-," chr1~chr1 16939833 117356355 2 -- 0.693147 1 0 1 1 6 TCGA-DX-A2J0-01A-11R-A21T-07 Nchr1~172107732~Nchr1~172107939 intergenic "-," "-," chr1~chr1 172107732 172107939 2 -- 0.693147 2 2 0 2 2 TCGA-DX-A2J0-01A-11R-A21T-07 Nchr1~232397480~Nchr1~219082561 intergenic "-," "-," chr1~chr1 232397480 219082561 8 -+ 1.320888 5 5 0 5 8 TCGA-DX-A2J0-01A-11R-A21T-07 Nchr5~43761966~RP11-116A1.1 intergenic "-," "RP11-116A1.1," chr5~chr5 43761966 88973267 4 ++ 1.039721 4 0 4 4 16 TCGA-DX-A2J0-01A-11R-A21T-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 9 -- 1.002718 3 3 0 3 4 TCGA-DX-A2J0-01A-11R-A21T-07 Nchr9~72831202~OTOGL intergenic "-," "OTOGL," chr9~chr12 72831202 80660339 4 -- 1.039721 4 1 3 4 14 TCGA-DX-A2J0-01A-11R-A21T-07 POC5~Nchr5~52754910 intergenic "POC5," "-," chr5~chr5 75013131 52754910 3 -+ 1.098612 2 1 1 2 16 TCGA-DX-A2J0-01A-11R-A21T-07 POC5~Nchr5~52755565 intergenic "POC5," "-," chr5~chr5 75013131 52755565 13 -+ 2.351673 9 7 2 9 32 TCGA-DX-A2J0-01A-11R-A21T-07 PTAR1~KLF9 fusion "PTAR1," "KLF9," chr9~chr9 72333253 73002921 2 -- 0.693147 1 0 1 1 8 TCGA-DX-A2J0-01A-11R-A21T-07 PTPRR~Nchr12~77089882 intergenic "PTPRR," "-," chr12~chr12 71106555 77089882 56 -- 2.678552 52 13 37 52 88 TCGA-DX-A2J0-01A-11R-A21T-07 RP11-611E13.2~RP11-263K4.5 fusion "RP11-611E13.2," "RP11-263K4.5," chr12~chr12 70297833 82875807 9 -- 1.889159 7 1 6 7 22 TCGA-DX-A2J0-01A-11R-A21T-07 RP11-745O10.4~NAV3 fusion "TMBIM4,RP11-745O10.4,TMBIM4," "NAV3," chr12~chr12 66563635 78520947 8 -+ 1.732868 8 3 5 8 34 TCGA-DX-A2J0-01A-11R-A21T-07 SOAT1~AGAP2 fusion "SOAT1," "AGAP2," chr1~chr12 179316832 58129210 3 +- 0.636514 2 1 1 2 8 TCGA-DX-A2J0-01A-11R-A21T-07 SOAT1~Nchr1~182991313 intergenic "SOAT1," "-," chr1~chr1 179319566 182991313 8 ++ 1.732868 8 4 4 8 30 TCGA-DX-A2J0-01A-11R-A21T-07 TBX15~FMN2 fusion "TBX15," "FMN2," chr1~chr1 119530214 240421245 13 -+ 2.057898 5 0 5 5 10 TCGA-DX-A2J0-01A-11R-A21T-07 TBX15~MAGI3 fusion "TBX15," "MAGI3," chr1~chr1 119530214 114123164 6 -+ 1.329661 4 4 0 4 22 TCGA-DX-A2J0-01A-11R-A21T-07 TRIO~TERT fusion "TRIO," "TERT," chr5~chr5 14406781 1282739 14 +- 2.083766 12 4 7 12 48 TCGA-DX-A2J0-01A-11R-A21T-07 TSFM~RCSD1 fusion "RP11-571M6.15,TSFM,RP11-571M6.15,TSFM," "RCSD1," chr12~chr1 58177066 167653137 19 ++ 2.305657 12 6 6 12 68 TCGA-DX-A2J0-01A-11R-A21T-07 TSFM~RP3-455J7.4 fusion "RP11-571M6.15,TSFM,RP11-571M6.15,TSFM," "RP3-455J7.4," chr12~chr1 58177066 167598677 22 ++ 2.404234 17 4 12 17 68 TCGA-DX-A2J0-01A-11R-A21T-07 UTP20~Nchr12~102769318 intergenic "UTP20," "-," chr12~chr12 101687023 102769318 3 ++ 0.636514 3 3 0 3 4 TCGA-DX-A2J0-01A-11R-A21T-07 UTP20~Nchr12~72603760 intergenic "UTP20," "-," chr12~chr12 101687023 72603760 2 +- 0.693147 2 1 1 2 16 TCGA-DX-A2J0-01A-11R-A21T-07 ZFC3H1~Nchr12~72124733 intergenic "ZFC3H1," "-," chr12~chr12 72032198 72124733 11 -+ 2.145842 9 4 5 9 26 TCGA-DX-A2J0-01A-11R-A21T-07 ZFC3H1~Nchr12~72128388 intergenic "ZFC3H1," "-," chr12~chr12 72032198 72128388 2 -+ 0.693147 1 0 1 1 12 TCGA-DX-A2J0-01A-11R-A21T-07 ZFC3H1~Nchr12~72130272 intergenic "ZFC3H1," "-," chr12~chr12 72032198 72130272 51 -+ 2.36634 41 24 16 41 186 TCGA-DX-A2J0-01A-11R-A21T-07 ZFC3H1~Nchr12~72130272 intergenic "ZFC3H1," "-," chr12~chr12 72036216 72130272 5 -+ 1.609438 4 0 4 4 76 TCGA-DX-A2J0-01A-11R-A21T-07 ZFC3H1~Nchr12~72131824 intergenic "ZFC3H1," "-," chr12~chr12 72032198 72131824 20 -+ 2.718473 13 6 7 13 104 TCGA-DX-A2J0-01A-11R-A21T-07 ZFC3H1~Nchr12~73832573 intergenic "ZFC3H1," "-," chr12~chr12 72032198 73832573 15 -- 1.783854 12 6 6 12 56 TCGA-DX-A2J0-01A-11R-A21T-07 ZFC3H1~Nchr12~73832573 intergenic "ZFC3H1," "-," chr12~chr12 72036216 73832573 4 -- 1.039721 2 2 0 2 22 TCGA-DX-A2J0-01A-11R-A21T-07 ZFC3H1~Nchr12~73971785 intergenic "ZFC3H1," "-," chr12~chr12 72032198 73971785 6 -- 1.329661 4 2 2 4 14 TCGA-DX-A2J0-01A-11R-A21T-07 ZFC3H1~Nchr12~73997342 intergenic "ZFC3H1," "-," chr12~chr12 72032198 73997342 4 -- 1.039721 3 2 1 3 20 TCGA-DX-A2J0-01A-11R-A21T-07 ZFC3H1~Nchr12~74016750 intergenic "ZFC3H1," "-," chr12~chr12 72032198 74016750 2 -- 0.693147 2 0 2 2 34 TCGA-DX-A2J0-01A-11R-A21T-07 ZFC3H1~Nchr12~74016750 intergenic "ZFC3H1," "-," chr12~chr12 72036216 74016750 4 -- 1.039721 4 0 4 4 12 TCGA-DX-A2J0-01A-11R-A21T-07 ZFC3H1~PTPRR fusion "ZFC3H1," "PTPRR," chr12~chr12 72030270 71167377 51 -- 2.835767 46 29 17 46 180 TCGA-DX-A2J0-01A-11R-A21T-07 ZFC3H1~PTPRR fusion "ZFC3H1," "PTPRR," chr12~chr12 72030270 71171517 4 -- 1.039721 3 2 1 3 102 TCGA-X6-A8C6-01A-11R-A36F-07 ABL1~RP11-308N19.4 fusion "ABL1," "RP11-308N19.4," chr9~chr9 133738422 109400440 11 ++ 1.893788 9 6 3 9 82 TCGA-X6-A8C6-01A-11R-A36F-07 ABL1~RP11-308N19.4 fusion "ABL1," "RP11-308N19.4," chr9~chr9 133738422 109427034 62 ++ 3.054633 56 43 13 56 88 TCGA-X6-A8C6-01A-11R-A36F-07 ABL1~RP11-308N19.4 fusion "ABL1," "RP11-308N19.4," chr9~chr9 133738422 109435150 11 ++ 1.798652 10 8 2 10 44 TCGA-X6-A8C6-01A-11R-A36F-07 ABL1~RP11-308N19.4 fusion "ABL1," "RP11-308N19.4," chr9~chr9 133738422 109455648 3 ++ 0.636514 3 2 1 3 8 TCGA-X6-A8C6-01A-11R-A36F-07 ABL1~RP11-308N19.4 fusion "ABL1," "RP11-308N19.4," chr9~chr9 133738422 109460089 8 ++ 1.906155 8 5 3 8 32 TCGA-X6-A8C6-01A-11R-A36F-07 ACADM~Nchr1~80063251 intergenic "ACADM," "-," chr1~chr1 76250515 80063251 16 -+ 2.3947 14 6 7 14 40 TCGA-X6-A8C6-01A-11R-A36F-07 APOO~NchrX~7972409 intergenic "APOO," "-," chrX~chrX 23925811 7972409 16 -- 2.306669 13 12 1 13 10 TCGA-X6-A8C6-01A-11R-A36F-07 ARHGEF10~Nchr8~32853719 intergenic "ARHGEF10," "-," chr8~chr8 1893821 32853719 8 ++ 2.079442 8 6 2 8 56 TCGA-X6-A8C6-01A-11R-A36F-07 ARHGEF10~Nchr8~32899153 intergenic "ARHGEF10," "-," chr8~chr8 1893821 32899153 14 ++ 1.970181 12 8 4 12 24 TCGA-X6-A8C6-01A-11R-A36F-07 ATF7~CALCOCO1 fusion "ATF7," "CALCOCO1," chr12~chr12 54020063 54121435 3 -- 0.636514 2 0 2 2 10 TCGA-X6-A8C6-01A-11R-A36F-07 ATF7~LYZ fusion "ATF7," "LYZ," chr12~chr12 54020063 69746000 7 -+ 1.747868 7 0 7 7 20 TCGA-X6-A8C6-01A-11R-A36F-07 BNIP3L~Nchr8~15042045 intergenic "BNIP3L," "-," chr8~chr8 26248942 15042045 6 ++ 1.56071 4 2 2 4 32 TCGA-X6-A8C6-01A-11R-A36F-07 BNIP3L~Nchr8~15043071 intergenic "BNIP3L," "-," chr8~chr8 26248942 15043071 11 ++ 2.145842 11 5 6 11 26 TCGA-X6-A8C6-01A-11R-A36F-07 C12orf66~Nchr12~65057994 intergenic "C12orf66," "-," chr12~chr12 64609458 65057994 3 -- 1.098612 3 1 2 3 2 TCGA-X6-A8C6-01A-11R-A36F-07 C15orf24~CD27 fusion "C15orf24," "CD27," chr15~chr12 34388096 6554590 7 -+ 1.747868 7 7 0 7 20 TCGA-X6-A8C6-01A-11R-A36F-07 C15orf24~CD27 fusion "C15orf24," "CD27," chr15~chr12 34388096 6559339 3 -+ 1.098612 3 1 2 3 6 TCGA-X6-A8C6-01A-11R-A36F-07 C15orf24~CD27 fusion "C15orf24," "CD27," chr15~chr12 34388096 6559707 3 -+ 1.098612 3 0 3 3 6 TCGA-X6-A8C6-01A-11R-A36F-07 C15orf24~Nchr12~6547646 intergenic "C15orf24," "-," chr15~chr12 34388096 6547646 10 -+ 2.163956 10 3 7 10 58 TCGA-X6-A8C6-01A-11R-A36F-07 C1orf9~DENND1B fusion "C1orf9," "DENND1B," chr1~chr1 172547529 197742062 5 +- 1.609438 5 1 4 5 10 TCGA-X6-A8C6-01A-11R-A36F-07 C1orf9~Nchr1~197752176 intergenic "C1orf9," "-," chr1~chr1 172547529 197752176 108 +- 3.034024 101 50 51 101 334 TCGA-X6-A8C6-01A-11R-A36F-07 C3orf26~Nchr3~103570502 intergenic "C3orf26," "-," chr3~chr3 99536887 103570502 29 ++ 2.398579 29 18 11 29 86 TCGA-X6-A8C6-01A-11R-A36F-07 CASC4~LRRC8C fusion "CASC4," "LRRC8D,LRRC8C,LRRC8D," chr15~chr1 44630515 90398626 9 ++ 2.197225 9 7 2 9 20 TCGA-X6-A8C6-01A-11R-A36F-07 CASC4~LRRC8D fusion "CASC4," "LRRC8D," chr15~chr1 44630515 90395367 2 ++ 0.693147 1 1 0 1 12 TCGA-X6-A8C6-01A-11R-A36F-07 CD44~EXT2 fusion "CD44," "EXT2," chr11~chr11 35160917 44265699 54 ++ 2.540464 53 23 30 53 70 TCGA-X6-A8C6-01A-11R-A36F-07 COLEC11~Nchr8~10714772 intergenic "COLEC11," "-," chr2~chr8 3652060 10714772 9 +- 1.735126 6 3 3 6 16 TCGA-X6-A8C6-01A-11R-A36F-07 COLEC11~Nchr8~10716758 intergenic "COLEC11," "-," chr2~chr8 3652060 10716758 11 +- 2.145842 7 2 5 7 20 TCGA-X6-A8C6-01A-11R-A36F-07 COLEC11~PINX1 fusion "COLEC11," "PINX1," chr2~chr8 3652060 10692285 5 +- 1.332179 5 3 2 5 8 TCGA-X6-A8C6-01A-11R-A36F-07 CTPS2~RGN fusion "CTPS2," "RGN," chrX~chrX 16716359 46940529 17 -+ 2.343933 17 8 9 17 54 TCGA-X6-A8C6-01A-11R-A36F-07 DENND1B~Nchr1~77270503 intergenic "DENND1B," "-," chr1~chr1 197611841 77270503 16 -- 2.588573 14 8 5 14 40 TCGA-X6-A8C6-01A-11R-A36F-07 DENND1B~RP11-415A20.1 fusion "DENND1B," "RP11-415A20.1," chr1~chr1 197611841 77224089 5 -- 1.609438 5 4 1 5 38 TCGA-X6-A8C6-01A-11R-A36F-07 DERA~CA3 fusion "DERA," "CA3," chr12~chr8 16064348 86295183 3 ++ 1.098612 3 1 2 3 6 TCGA-X6-A8C6-01A-11R-A36F-07 DERA~CA3 fusion "DERA," "CA3," chr12~chr8 16064348 86350231 3 ++ 1.098612 3 0 3 3 10 TCGA-X6-A8C6-01A-11R-A36F-07 DERA~CA3 fusion "DERA," "CA3," chr12~chr8 16064348 86351941 7 ++ 1.747868 7 0 7 7 8 TCGA-X6-A8C6-01A-11R-A36F-07 EFCAB4B~SYT10 fusion "EFCAB4B," "SYT10," chr12~chr12 3805938 33579430 2 -- 0.693147 2 1 1 2 4 TCGA-X6-A8C6-01A-11R-A36F-07 FARS2~Nchr1~171435764 intergenic "FARS2," "-," chr6~chr1 5261893 171435764 5 ++ 1.332179 4 0 4 4 228 TCGA-X6-A8C6-01A-11R-A36F-07 FARS2~Nchr1~171435771 intergenic "FARS2," "-," chr6~chr1 5261893 171435771 28 ++ 2.731527 24 19 5 24 228 TCGA-X6-A8C6-01A-11R-A36F-07 FBXO8~PALLD fusion "FBXO8," "PALLD," chr4~chr4 175204561 169589341 12 -+ 1.820076 12 8 4 12 6 TCGA-X6-A8C6-01A-11R-A36F-07 FRS2~Nchr12~70099784 intergenic "FRS2," "-," chr12~chr12 69925836 70099784 4 +- 1.386294 2 0 2 2 4 TCGA-X6-A8C6-01A-11R-A36F-07 FSD1L~OTUD7B fusion "FSD1L," "OTUD7B," chr9~chr1 108210516 149949511 3 +- 0.636514 3 0 3 3 8 TCGA-X6-A8C6-01A-11R-A36F-07 GBE1~Nchr3~19007785 intergenic "GBE1," "-," chr3~chr3 81627076 19007785 6 -+ 1.791759 6 3 3 6 8 TCGA-X6-A8C6-01A-11R-A36F-07 HIRA~NSMCE2 fusion "HIRA," "NSMCE2," chr22~chr8 19418963 126369461 11 -+ 2.019815 11 4 7 11 20 TCGA-X6-A8C6-01A-11R-A36F-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 91 -- 2.188802 90 90 0 90 42 TCGA-X6-A8C6-01A-11R-A36F-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32487941 32548633 27 -- 2.011227 6 0 6 6 4 TCGA-X6-A8C6-01A-11R-A36F-07 INPP5E~Nchr9~107897062 intergenic "INPP5E," "-," chr9~chr9 139333060 107897062 11 -+ 2.271869 10 7 3 10 26 TCGA-X6-A8C6-01A-11R-A36F-07 INPP5E~Nchr9~107917165 intergenic "INPP5E," "-," chr9~chr9 139333060 107917165 2 -+ 0.693147 2 0 2 2 4 TCGA-X6-A8C6-01A-11R-A36F-07 KANK1~CTD-2651L24.1 fusion "KANK1," "CTD-2651L24.1," chr9~chr5 540667 40267458 12 ++ 2.138333 12 9 3 12 14 TCGA-X6-A8C6-01A-11R-A36F-07 KIDINS220~COLEC11 fusion "KIDINS220," "COLEC11," chr2~chr2 8888017 3651905 3 -+ 1.098612 2 0 2 2 28 TCGA-X6-A8C6-01A-11R-A36F-07 KIDINS220~COLEC11 fusion "KIDINS220," "COLEC11," chr2~chr2 8890242 3651905 20 -+ 2.26725 16 5 11 16 30 TCGA-X6-A8C6-01A-11R-A36F-07 KIDINS220~PINX1 fusion "KIDINS220," "PINX1," chr2~chr8 8890242 10692285 2 -- 0.693147 2 1 1 2 10 TCGA-X6-A8C6-01A-11R-A36F-07 LAMB1~NRCAM fusion "LAMB1," "NRCAM," chr7~chr7 107626467 107800937 21 -- 2.466577 19 13 6 19 40 TCGA-X6-A8C6-01A-11R-A36F-07 LIMK1~GNAT3 fusion "LIMK1," "GNAT3," chr7~chr7 73530288 80123963 8 +- 2.079442 8 4 4 8 6 TCGA-X6-A8C6-01A-11R-A36F-07 LIMK1~Nchr7~96356972 intergenic "LIMK1," "-," chr7~chr7 73523366 96356972 14 +- 2.007556 14 4 10 14 26 TCGA-X6-A8C6-01A-11R-A36F-07 LIMK1~SHFM1 fusion "LIMK1," "SHFM1," chr7~chr7 73523366 96324203 8 +- 1.906155 8 4 4 8 10 TCGA-X6-A8C6-01A-11R-A36F-07 LOXL2~Nchr8~32219161 intergenic "LOXL2," "-," chr8~chr8 23167137 32219161 16 -- 2.370135 18 7 9 18 62 TCGA-X6-A8C6-01A-11R-A36F-07 LSAMP~Nchr3~116018482 intergenic "LSAMP," "-," chr3~chr3 115726132 116018482 5 ++ 1.609438 4 2 2 4 12 TCGA-X6-A8C6-01A-11R-A36F-07 LTBP2~Nchr8~85068319 intergenic "LTBP2," "-," chr14~chr8 74988614 85068319 12 -- 2.138333 11 7 4 11 12 TCGA-X6-A8C6-01A-11R-A36F-07 LTBP2~Nchr8~85083917 intergenic "LTBP2," "-," chr14~chr8 74988614 85083917 10 -- 2.025326 10 4 6 10 20 TCGA-X6-A8C6-01A-11R-A36F-07 MAD1L1~ATP5I fusion "MAD1L1," "ATP5I," chr7~chr4 2188787 667190 3 -- 0.636514 2 1 1 2 2 TCGA-X6-A8C6-01A-11R-A36F-07 MCPH1~MYT1L fusion "MCPH1," "MYT1L," chr8~chr2 6272404 2001119 2 +- 0.693147 2 2 0 2 8 TCGA-X6-A8C6-01A-11R-A36F-07 MDFIC~Nchr7~115254895 intergenic "MDFIC," "-," chr7~chr7 114619836 115254895 4 ++ 1.039721 4 3 1 4 6 TCGA-X6-A8C6-01A-11R-A36F-07 MYH8~Nchr17~10511671 intergenic "MYH8," "-," chr17~chr17 10309555 10511671 6 ++ 1.56071 4 1 3 4 6 TCGA-X6-A8C6-01A-11R-A36F-07 NTN4~Nchr3~98364751 intergenic "NTN4," "-," chr12~chr3 96131644 98364751 15 -- 2.176186 14 7 7 14 28 TCGA-X6-A8C6-01A-11R-A36F-07 NUMB~Nchr14~49345057 intergenic "NUMB," "-," chr14~chr14 73759442 49345057 2 -- 0.693147 2 1 1 2 2 TCGA-X6-A8C6-01A-11R-A36F-07 NUMB~Nchr14~49377759 intergenic "NUMB," "-," chr14~chr14 73759442 49377759 3 -- 1.098612 2 2 0 2 30 TCGA-X6-A8C6-01A-11R-A36F-07 NUMB~Nchr3~162941825 intergenic "NUMB," "-," chr14~chr3 73759442 162941825 2 -+ 0.693147 2 2 0 2 62 TCGA-X6-A8C6-01A-11R-A36F-07 NUMB~Nchr3~162941828 intergenic "NUMB," "-," chr14~chr3 73759442 162941828 15 -+ 2.430791 15 3 12 15 60 TCGA-X6-A8C6-01A-11R-A36F-07 NUMB~RP11-10O22.1 fusion "NUMB," "RP11-10O22.1," chr14~chr3 73759442 162925763 8 -+ 1.732868 8 6 2 8 28 TCGA-X6-A8C6-01A-11R-A36F-07 NUMB~RP11-10O22.1 fusion "NUMB," "RP11-10O22.1," chr14~chr3 73759442 162946486 8 -+ 1.732868 8 3 5 8 24 TCGA-X6-A8C6-01A-11R-A36F-07 NUMB~RP11-10O22.1 fusion "NUMB," "RP11-10O22.1," chr14~chr3 73759442 162948497 12 -+ 1.632631 12 10 2 12 28 TCGA-X6-A8C6-01A-11R-A36F-07 Nchr11~47213097~RPS20 intergenic "-," "RPS20," chr11~chr8 47213097 56986962 2 +- 0.693147 2 0 2 2 10 TCGA-X6-A8C6-01A-11R-A36F-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 135 -+ 2.595709 63 0 63 63 58 TCGA-X6-A8C6-01A-11R-A36F-07 Nchr12~6547637~C15orf24 intergenic "-," "C15orf24," chr12~chr15 6547637 34388096 13 -+ 2.204785 13 5 8 13 60 TCGA-X6-A8C6-01A-11R-A36F-07 Nchr14~45066112~Nchr14~44862941 intergenic "-," "-," chr14~chr14 45066112 44862941 16 -- 2.252728 6 6 0 6 8 TCGA-X6-A8C6-01A-11R-A36F-07 Nchr14~56045324~AL163872.1 intergenic "-," "AL163872.1," chr14~chr14 56045324 98120292 2 -+ 0.693147 2 1 1 2 10 TCGA-X6-A8C6-01A-11R-A36F-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 137 -+ 3.073179 131 82 49 131 466 TCGA-X6-A8C6-01A-11R-A36F-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145013721 13 -+ 2.138397 12 6 6 12 42 TCGA-X6-A8C6-01A-11R-A36F-07 Nchr2~81709228~Nchr2~82049394 intergenic "-," "-," chr2~chr2 81709228 82049394 2 ++ 0.693147 1 0 1 1 16 TCGA-X6-A8C6-01A-11R-A36F-07 Nchr2~81709228~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81709228 82075877 3 ++ 1.098612 3 0 3 3 16 TCGA-X6-A8C6-01A-11R-A36F-07 Nchr2~81775871~Nchr2~82049394 intergenic "-," "-," chr2~chr2 81775871 82049394 8 ++ 2.079442 6 0 6 6 56 TCGA-X6-A8C6-01A-11R-A36F-07 Nchr2~81775871~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81775871 82075877 26 ++ 2.651462 20 8 12 20 48 TCGA-X6-A8C6-01A-11R-A36F-07 Nchr3~115510005~LSAMP intergenic "-," "LSAMP," chr3~chr3 115510005 115725983 7 ++ 1.475076 5 3 2 5 10 TCGA-X6-A8C6-01A-11R-A36F-07 Nchr3~115510005~LSAMP intergenic "-," "LSAMP," chr3~chr3 115510005 115786776 3 ++ 1.098612 2 2 0 2 6 TCGA-X6-A8C6-01A-11R-A36F-07 Nchr3~82251605~Nchr3~82465271 intergenic "-," "-," chr3~chr3 82251605 82465271 2 ++ 0.693147 2 1 1 2 8 TCGA-X6-A8C6-01A-11R-A36F-07 Nchr3~82253793~Nchr3~82465271 intergenic "-," "-," chr3~chr3 82253793 82465271 4 ++ 1.386294 3 2 1 3 8 TCGA-X6-A8C6-01A-11R-A36F-07 Nchr6~141219325~Nchr6~140972698 intergenic "-," "-," chr6~chr6 141219325 140972698 6 -- 1.242453 3 2 1 3 4 TCGA-X6-A8C6-01A-11R-A36F-07 Nchr7~110969450~IMMP2L intergenic "-," "IMMP2L," chr7~chr7 110969450 110603621 9 -- 2.043192 2 0 2 2 2 TCGA-X6-A8C6-01A-11R-A36F-07 Nchr7~122851497~Nchr7~123096679 intergenic "-," "-," chr7~chr7 122851497 123096679 9 ++ 1.676988 9 1 8 9 6 TCGA-X6-A8C6-01A-11R-A36F-07 Nchr7~82971816~Nchr7~116946537 intergenic "-," "-," chr7~chr7 82971816 116946537 2 -+ 0.693147 2 1 1 2 2 TCGA-X6-A8C6-01A-11R-A36F-07 Nchr7~96483990~Nchr7~116945727 intergenic "-," "-," chr7~chr7 96483990 116945727 4 +- 1.386294 4 4 0 4 6 TCGA-X6-A8C6-01A-11R-A36F-07 NchrX~102082072~FAM179A intergenic "-," "FAM179A," chrX~chr2 102082072 29217591 5 ++ 1.332179 5 3 2 5 6 TCGA-X6-A8C6-01A-11R-A36F-07 NchrX~151804336~Nchr14~66513863 intergenic "-," "-," chrX~chr14 151804336 66513863 5 -+ 1.332179 4 3 1 4 8 TCGA-X6-A8C6-01A-11R-A36F-07 NchrX~94827508~Nchr2~22030192 intergenic "-," "-," chrX~chr2 94827508 22030192 3 +- 1.098612 3 1 2 3 4 TCGA-X6-A8C6-01A-11R-A36F-07 NchrX~94827508~Nchr2~22043389 intergenic "-," "-," chrX~chr2 94827508 22043389 9 +- 1.464816 8 5 3 8 20 TCGA-X6-A8C6-01A-11R-A36F-07 PALLD~Nchr1~147706553 intergenic "PALLD," "-," chr4~chr1 169589519 147706553 11 ++ 2.019815 11 8 3 11 10 TCGA-X6-A8C6-01A-11R-A36F-07 PARD6G~Nchr14~107259632 intergenic "PARD6G," "-," chr18~chr14 78005160 107259632 5 -- 1.609438 5 2 3 5 10 TCGA-X6-A8C6-01A-11R-A36F-07 PAXIP1~DPP6 fusion "PAXIP1," "DPP6," chr7~chr7 154751600 154536831 6 -+ 1.56071 5 2 3 5 12 TCGA-X6-A8C6-01A-11R-A36F-07 PBK~Nchr8~13969556 intergenic "PBK," "-," chr8~chr8 27678082 13969556 5 -+ 1.609438 5 1 4 5 14 TCGA-X6-A8C6-01A-11R-A36F-07 PPP4R1L~Nchr20~56536652 intergenic "PPP4R1L," "-," chr20~chr20 56846419 56536652 5 -- 1.609438 5 1 4 5 8 TCGA-X6-A8C6-01A-11R-A36F-07 PPP4R1L~Nchr20~56542197 intergenic "PPP4R1L," "-," chr20~chr20 56846419 56542197 2 -- 0.693147 2 2 0 2 6 TCGA-X6-A8C6-01A-11R-A36F-07 PRUNE2~NchrX~107274086 intergenic "PRUNE2," "-," chr9~chrX 79461431 107274086 2 -- 0.693147 2 0 2 2 10 TCGA-X6-A8C6-01A-11R-A36F-07 PUM2~Nchr2~22030192 intergenic "PUM2," "-," chr2~chr2 20550358 22030192 6 -- 1.242453 6 1 5 6 14 TCGA-X6-A8C6-01A-11R-A36F-07 PUM2~NchrX~94825403 intergenic "PUM2," "-," chr2~chrX 20550358 94825403 4 -+ 1.386294 3 2 1 3 10 TCGA-X6-A8C6-01A-11R-A36F-07 R3HDM2~NTN4 fusion "R3HDM2," "NTN4," chr12~chr12 57789532 96077487 11 -- 2.271869 11 3 8 11 12 TCGA-X6-A8C6-01A-11R-A36F-07 REPS2~GLRA2 fusion "REPS2," "GLRA2," chrX~chrX 17121902 14708832 12 ++ 1.907284 12 10 2 12 20 TCGA-X6-A8C6-01A-11R-A36F-07 RP11-10O22.2~Nchr3~164126410 intergenic "RP11-10O22.2," "-," chr3~chr3 163046703 164126410 2 +- 0.693147 2 2 0 2 2 TCGA-X6-A8C6-01A-11R-A36F-07 RP11-10O22.2~Nchr3~164144985 intergenic "RP11-10O22.2," "-," chr3~chr3 163046703 164144985 5 +- 1.609438 5 1 4 5 8 TCGA-X6-A8C6-01A-11R-A36F-07 SHQ1~Nchr3~84375647 intergenic "SHQ1," "-," chr3~chr3 72891431 84375647 52 -- 2.753028 46 33 13 46 78 TCGA-X6-A8C6-01A-11R-A36F-07 SHQ1~Nchr3~84428256 intergenic "SHQ1," "-," chr3~chr3 72891431 84428256 2 -- 0.693147 2 1 1 2 4 TCGA-X6-A8C6-01A-11R-A36F-07 SLC22A23~NchrX~4673702 intergenic "SLC22A23," "-," chr6~chrX 3456140 4673702 17 -+ 2.476247 17 10 7 17 32 TCGA-X6-A8C6-01A-11R-A36F-07 SLC44A1~TMEM38B fusion "SLC44A1," "TMEM38B," chr9~chr9 108147783 108510354 11 ++ 2.145842 11 4 7 11 16 TCGA-X6-A8C6-01A-11R-A36F-07 SLC44A1~TMEM38B fusion "SLC44A1," "TMEM38B," chr9~chr9 108147783 108536146 2 ++ 0.693147 2 0 2 2 2 TCGA-X6-A8C6-01A-11R-A36F-07 SNAPC1~Nchr14~74917270 intergenic "SNAPC1," "-," chr14~chr14 62259620 74917270 6 +- 1.791759 5 2 3 5 18 TCGA-X6-A8C6-01A-11R-A36F-07 SNAPC1~Nchr14~74922603 intergenic "SNAPC1," "-," chr14~chr14 62259620 74922603 4 +- 1.386294 3 1 2 3 4 TCGA-X6-A8C6-01A-11R-A36F-07 TP53~DNAH2 fusion "WRAP53,TP53," "DNAH2," chr17~chr17 7590695 7727152 11 -+ 2.271869 11 4 7 11 56 TCGA-X6-A8C6-01A-11R-A36F-07 TP53~DNAH2 fusion "WRAP53,TP53," "DNAH2," chr17~chr17 7590695 7727214 2 -+ 0.693147 2 0 2 2 36 TCGA-X6-A8C6-01A-11R-A36F-07 TP53~DNAH2 fusion "WRAP53,TP53," "DNAH2," chr17~chr17 7590695 7727439 5 -+ 1.332179 5 4 1 5 26 TCGA-X6-A8C6-01A-11R-A36F-07 TP53~DNAH2 fusion "WRAP53,TP53," "DNAH2," chr17~chr17 7590695 7733618 25 -+ 2.522418 24 12 12 24 110 TCGA-MB-A8JL-01A-11R-A36F-07 ADAL~C15orf43 fusion "ADAL," "C15orf43," chr15~chr15 43638178 45266065 4 ++ 1.039721 4 3 1 4 10 TCGA-MB-A8JL-01A-11R-A36F-07 BAZ2B~Nchr2~157019593 intergenic "BAZ2B," "-," chr2~chr2 160303293 157019593 4 -- 1.386294 4 2 2 4 14 TCGA-MB-A8JL-01A-11R-A36F-07 CALCOCO1~FAM19A2 fusion "CALCOCO1," "FAM19A2," chr12~chr12 54118871 62261207 2 -- 0.693147 2 2 0 2 4 TCGA-MB-A8JL-01A-11R-A36F-07 CLIP3~Nchr19~36422225 intergenic "CLIP3," "-," chr19~chr19 36510286 36422225 2 ++ 0.693147 2 1 1 2 2 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266738 94038082 6 -+ 1.242453 2 1 1 2 42 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48276641 94039038 4 -+ 1.386294 2 0 2 2 4 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273978 94039554 24 -+ 0.789277 21 21 0 21 12 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48268213 94039751 2 -+ 0.693147 2 2 0 2 22 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48275093 94039795 4 -+ 0.562335 4 3 1 4 6 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271945 94043541 2 -+ 0.693147 1 1 0 1 12 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266103 94047036 4 -+ 1.039721 4 3 1 4 26 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94047811 3 -+ 0.636514 3 3 0 3 56 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273284 94049545 20 -+ 2.016154 1 1 0 1 18 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48270001 94050330 4 -+ 1.039721 2 0 2 2 30 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264376 94050330 2 -+ 0.693147 1 1 0 1 88 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48263319 94058563 4 -+ 0.562335 3 3 0 3 36 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48271934 189858960 4 -+ 1.386294 3 2 1 3 10 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48271312 189860464 4 -+ 1.039721 1 0 1 1 16 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266738 189861891 6 -+ 1.329661 2 2 0 2 12 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272593 189864568 6 -+ 1.011404 6 5 1 6 22 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48271790 189870095 30 -+ 0.815612 28 27 1 28 36 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266103 189871071 4 -+ 1.386294 2 2 0 2 30 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48267220 189871089 2 -+ 0.693147 2 0 2 2 10 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266773 189871126 3 -+ 1.098612 3 1 2 3 14 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266854 189875527 2 -+ 0.693147 2 1 1 2 2 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A1~IGF2 fusion "COL1A1," "IGF2,IGF2," chr17~chr11 48277211 2151233 3 -- 1.098612 2 1 1 2 16 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94057197 48263868 2 +- 0.693147 2 1 1 2 18 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047864 48266156 8 +- 2.079442 1 0 1 1 22 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047864 48266636 4 +- 1.386294 4 1 3 4 26 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48266636 18 +- 2.187033 13 0 13 13 28 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94053755 48272461 6 +- 0.867563 5 1 4 5 22 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94053755 48273889 15 +- 1.286873 15 1 14 15 16 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94039133 189859267 2 ++ 0.693147 1 0 1 1 4 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94049756 189859450 2 ++ 0.693147 2 1 1 2 10 TCGA-MB-A8JL-01A-11R-A36F-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94053755 189864568 13 ++ 1.156988 11 1 10 11 6 TCGA-MB-A8JL-01A-11R-A36F-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870985 48265317 3 +- 0.636514 3 0 3 3 36 TCGA-MB-A8JL-01A-11R-A36F-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189864303 48265317 4 +- 1.039721 3 1 2 3 18 TCGA-MB-A8JL-01A-11R-A36F-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189866315 48265317 2 +- 0.693147 2 0 2 2 12 TCGA-MB-A8JL-01A-11R-A36F-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189864092 48267414 2 +- 0.693147 1 0 1 1 10 TCGA-MB-A8JL-01A-11R-A36F-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189869090 48267957 8 +- 1.073543 8 2 6 8 2 TCGA-MB-A8JL-01A-11R-A36F-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189864303 48268285 7 +- 1.549826 4 1 3 4 16 TCGA-MB-A8JL-01A-11R-A36F-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189858808 48271808 5 +- 0.950271 5 0 5 5 8 TCGA-MB-A8JL-01A-11R-A36F-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189856448 48273560 2 +- 0.693147 2 1 1 2 4 TCGA-MB-A8JL-01A-11R-A36F-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189871681 48273728 5 +- 1.05492 5 1 4 5 16 TCGA-MB-A8JL-01A-11R-A36F-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189871178 94055735 7 ++ 0.9557 6 6 0 6 2 TCGA-MB-A8JL-01A-11R-A36F-07 CTDSP1~RP5-1116C7.1 fusion "CTDSP1," "RP5-1116C7.1," chr2~chr1 219267128 172113577 3 +- 1.098612 3 2 1 3 4 TCGA-MB-A8JL-01A-11R-A36F-07 IGF2~COL1A1 fusion "IGF2,IGF2," "COL1A1," chr11~chr17 2151234 48262985 2 -- 0.693147 2 2 0 2 6 TCGA-MB-A8JL-01A-11R-A36F-07 IGF2~MMP14 fusion "IGF2,AC132217.4,IGF2," "MMP14," chr11~chr14 2150540 23315877 2 -+ 0.693147 2 2 0 2 4 TCGA-MB-A8JL-01A-11R-A36F-07 IGF2~Nchr17~80202013 intergenic "IGF2,IGF2," "-," chr11~chr17 2153143 80202013 2 +- 0.693147 2 0 2 2 38 TCGA-MB-A8JL-01A-11R-A36F-07 KIAA1267~PYY fusion "KIAA1267," "PYY," chr17~chr17 44248221 42043900 19 -- 2.40616 19 12 7 19 62 TCGA-MB-A8JL-01A-11R-A36F-07 KIAA1797~Nchr9~23261042 intergenic "KIAA1797," "-," chr9~chr9 20778767 23261042 12 ++ 1.979205 12 7 5 12 10 TCGA-MB-A8JL-01A-11R-A36F-07 LRIG3~XRCC6BP1 fusion "LRIG3," "XRCC6BP1," chr12~chr12 59307763 58339411 141 -+ 3.295664 137 77 60 137 368 TCGA-MB-A8JL-01A-11R-A36F-07 LRIG3~XRCC6BP1 fusion "LRIG3," "XRCC6BP1," chr12~chr12 59307763 58340778 9 -+ 2.043192 9 5 4 9 216 TCGA-MB-A8JL-01A-11R-A36F-07 LRIG3~XRCC6BP1 fusion "LRIG3," "XRCC6BP1," chr12~chr12 59307763 58345541 13 -+ 2.138397 12 6 6 12 84 TCGA-MB-A8JL-01A-11R-A36F-07 LRIG3~XRCC6BP1 fusion "LRIG3," "XRCC6BP1," chr12~chr12 59307763 58347389 2 -+ 0.693147 2 2 0 2 36 TCGA-MB-A8JL-01A-11R-A36F-07 LRIG3~XRCC6BP1 fusion "LRIG3," "XRCC6BP1," chr12~chr12 59307763 58350470 5 -+ 1.609438 5 2 3 5 26 TCGA-MB-A8JL-01A-11R-A36F-07 Nchr10~3361048~Nchr10~3790880 intergenic "-," "-," chr10~chr10 3361048 3790880 7 ++ 1.475076 7 5 2 7 50 TCGA-MB-A8JL-01A-11R-A36F-07 Nchr10~65819965~Nchr10~66046226 intergenic "-," "-," chr10~chr10 65819965 66046226 7 ++ 1.747868 7 2 5 7 18 TCGA-MB-A8JL-01A-11R-A36F-07 Nchr10~65819965~Nchr10~66061276 intergenic "-," "-," chr10~chr10 65819965 66061276 8 ++ 1.906155 4 1 3 4 14 TCGA-MB-A8JL-01A-11R-A36F-07 Nchr10~66061412~Nchr10~66380687 intergenic "-," "-," chr10~chr10 66061412 66380687 2 ++ 0.693147 2 1 1 2 6 TCGA-MB-A8JL-01A-11R-A36F-07 Nchr10~66061412~Nchr10~66451199 intergenic "-," "-," chr10~chr10 66061412 66451199 18 ++ 2.168155 15 5 10 15 20 TCGA-MB-A8JL-01A-11R-A36F-07 Nchr10~66076354~Nchr10~66451199 intergenic "-," "-," chr10~chr10 66076354 66451199 3 ++ 1.098612 3 1 2 3 22 TCGA-MB-A8JL-01A-11R-A36F-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 78 -+ 2.432732 35 0 35 35 16 TCGA-MB-A8JL-01A-11R-A36F-07 Nchr14~72399658~RGS6 intergenic "-," "RGS6," chr14~chr14 72399658 72818803 4 ++ 1.386294 2 2 0 2 4 TCGA-MB-A8JL-01A-11R-A36F-07 Nchr14~90085372~FOXN3 intergenic "-," "FOXN3," chr14~chr14 90085372 89878834 6 -- 1.791759 6 5 1 6 16 TCGA-MB-A8JL-01A-11R-A36F-07 Nchr16~24652330~Nchr16~25554685 intergenic "-," "-," chr16~chr16 24652330 25554685 2 ++ 0.693147 2 2 0 2 4 TCGA-MB-A8JL-01A-11R-A36F-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 13 ++ 2.245035 13 3 10 13 20 TCGA-MB-A8JL-01A-11R-A36F-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 6 ++ 1.56071 6 4 2 6 20 TCGA-MB-A8JL-01A-11R-A36F-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151282 2 -- 0.693147 1 0 1 1 8 TCGA-MB-A8JL-01A-11R-A36F-07 Nchr2~65710286~Nchr2~65918916 intergenic "-," "-," chr2~chr2 65710286 65918916 4 ++ 1.386294 4 1 3 4 2 TCGA-MB-A8JL-01A-11R-A36F-07 NchrX~64295792~NchrX~64586518 intergenic "-," "-," chrX~chrX 64295792 64586518 4 ++ 1.386294 3 1 2 3 8 TCGA-MB-A8JL-01A-11R-A36F-07 PPM1H~PDZRN4 fusion "PPM1H," "PDZRN4," chr12~chr12 63087716 41900258 12 -+ 2.369382 12 9 3 12 20 TCGA-MB-A8JL-01A-11R-A36F-07 RP11-166D19.1~RP5-1116C7.1 fusion "RP11-166D19.1," "RP5-1116C7.1," chr11~chr1 121971082 172113577 2 -- 0.693147 2 2 0 2 2 TCGA-MB-A8JL-01A-11R-A36F-07 RP11-366L20.2~Nchr12~54242829 intergenic "RP11-366L20.2," "-," chr12~chr12 66270840 54242829 3 -- 1.098612 3 3 0 3 4 TCGA-MB-A8JL-01A-11R-A36F-07 RP11-366L20.2~Nchr12~54242829 intergenic "RP11-366L20.2," "-," chr12~chr12 66260584 54242829 9 -- 2.043192 9 7 2 9 14 TCGA-MB-A8JL-01A-11R-A36F-07 RP11-366L20.2~Nchr12~54242829 intergenic "RP11-366L20.2," "-," chr12~chr12 66253339 54242829 2 -- 0.693147 2 1 1 2 2 TCGA-MB-A8JL-01A-11R-A36F-07 TMEM117~Nchr12~54242829 intergenic "TMEM117," "-," chr12~chr12 44338145 54242829 3 +- 1.098612 2 2 0 2 10 TCGA-MB-A8JL-01A-11R-A36F-07 TMEM117~RP11-366L20.2 fusion "TMEM117," "RP11-366L20.2," chr12~chr12 44338145 66260734 11 +- 1.767761 9 2 7 9 10 TCGA-MB-A8JK-01A-11R-A36F-07 C1orf196~KAZN fusion "C1orf196," "KAZN," chr1~chr1 14507087 14925479 8 ++ 1.559581 7 5 2 7 12 TCGA-MB-A8JK-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266738 94053648 5 -+ 1.05492 2 2 0 2 4 TCGA-MB-A8JK-01A-11R-A36F-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047864 48273560 9 +- 1.273028 8 1 7 8 2 TCGA-MB-A8JK-01A-11R-A36F-07 FBXL7~Nchr16~51611893 intergenic "FBXL7," "-," chr5~chr16 15616181 51611893 7 +- 1.747868 7 4 3 7 4 TCGA-MB-A8JK-01A-11R-A36F-07 FBXL7~Nchr16~51648660 intergenic "FBXL7," "-," chr5~chr16 15616181 51648660 5 +- 1.05492 4 2 2 4 6 TCGA-MB-A8JK-01A-11R-A36F-07 HLA-B~Nchr6~29902006 intergenic "HLA-B," "-," chr6~chr6 31323352 29902006 4 ++ 1.386294 3 3 0 3 132 TCGA-MB-A8JK-01A-11R-A36F-07 IMPACT~Nchr13~47588788 intergenic "IMPACT," "-," chr18~chr13 22025430 47588788 37 +- 2.564185 37 23 14 37 62 TCGA-MB-A8JK-01A-11R-A36F-07 NEO1~ZFAT fusion "NEO1," "ZFAT," chr15~chr8 73428368 135669980 27 +- 2.355488 26 15 11 26 54 TCGA-MB-A8JK-01A-11R-A36F-07 NFIX~SEMA3A fusion "NFIX," "SEMA3A," chr19~chr7 13136366 83614793 7 +- 1.747868 7 2 5 7 6 TCGA-MB-A8JK-01A-11R-A36F-07 NPTN~Nchr17~77067583 intergenic "NPTN," "-," chr15~chr17 73925466 77067583 8 -+ 1.732868 8 5 3 8 28 TCGA-MB-A8JK-01A-11R-A36F-07 Nchr11~27603245~RPS25 intergenic "-," "RPS25," chr11~chr11 27603245 118889038 9 -- 2.043192 7 0 7 7 162 TCGA-MB-A8JK-01A-11R-A36F-07 Nchr11~39184208~RP11-460B17.3 intergenic "-," "RP11-460B17.3," chr11~chr11 39184208 29357629 5 +- 1.332179 5 2 3 5 6 TCGA-MB-A8JK-01A-11R-A36F-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 28 -+ 2.224286 16 0 16 16 12 TCGA-MB-A8JK-01A-11R-A36F-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 4 ++ 1.039721 4 1 3 4 4 TCGA-MB-A8JK-01A-11R-A36F-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 25 -+ 2.522418 24 11 13 24 188 TCGA-MB-A8JK-01A-11R-A36F-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145013721 5 -+ 1.332179 4 1 3 4 30 TCGA-MB-A8JK-01A-11R-A36F-07 Nchr3~161318340~Nchr3~161922525 intergenic "-," "-," chr3~chr3 161318340 161922525 15 ++ 2.430791 12 7 5 12 22 TCGA-MB-A8JK-01A-11R-A36F-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 7 ++ 1.475076 7 7 0 7 4 TCGA-MB-A8JK-01A-11R-A36F-07 PDS5B~Nchr13~48049225 intergenic "PDS5B," "-," chr13~chr13 33262706 48049225 12 ++ 1.86368 10 5 5 10 36 TCGA-MB-A8JK-01A-11R-A36F-07 PKN1~DDX39A fusion "PKN1," "DDX39A," chr19~chr19 14562835 14524036 4 +- 1.386294 4 4 0 4 18 TCGA-MB-A8JK-01A-11R-A36F-07 RIPK1~SERPINB9 fusion "RIPK1," "SERPINB9," chr6~chr6 3064293 2900855 3 +- 1.098612 3 3 0 3 8 TCGA-MB-A8JK-01A-11R-A36F-07 SBNO2~Nchr2~127496055 intergenic "SBNO2," "-," chr19~chr2 1147308 127496055 10 -+ 1.834372 10 5 5 10 14 TCGA-MB-A8JK-01A-11R-A36F-07 SBNO2~Nchr2~127511268 intergenic "SBNO2," "-," chr19~chr2 1147308 127511268 2 -+ 0.693147 2 2 0 2 12 TCGA-MB-A8JK-01A-11R-A36F-07 ZNF250~Nchr8~146264853 intergenic "ZNF250," "-," chr8~chr8 146114966 146264853 11 -+ 2.145842 11 6 5 11 12 TCGA-X6-A8C5-01A-11R-A36F-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 3 +- 1.098612 3 1 2 3 14 TCGA-X6-A8C5-01A-11R-A36F-07 EVC2~TMED11P fusion "EVC2," "TMED11P," chr4~chr4 5664834 1110198 6 -- 1.329661 6 2 4 6 10 TCGA-X6-A8C5-01A-11R-A36F-07 EVC2~TMED11P fusion "EVC2," "TMED11P," chr4~chr4 5664834 1117006 3 -- 0.636514 3 1 2 3 8 TCGA-X6-A8C5-01A-11R-A36F-07 HLA-B~Nchr6~29902006 intergenic "HLA-B," "-," chr6~chr6 31323352 29902006 5 ++ 1.332179 2 2 0 2 62 TCGA-X6-A8C5-01A-11R-A36F-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489801 32552130 2 -- 0.693147 2 0 2 2 168 TCGA-X6-A8C5-01A-11R-A36F-07 IGHV4-34~IGHG1 fusion "IGHV4-34," "IGHG1," chr14~chr14 106829809 106209407 4 -- 1.386294 4 2 2 4 26 TCGA-X6-A8C5-01A-11R-A36F-07 LILRB4~Nchr19~56213794 intergenic "LILRB4," "-," chr19~chr19 55174519 56213794 9 +- 1.735126 7 2 5 7 10 TCGA-X6-A8C5-01A-11R-A36F-07 MYH10~Nchr13~53444186 intergenic "MYH10," "-," chr17~chr13 8533972 53444186 5 -+ 1.332179 2 2 0 2 6 TCGA-X6-A8C5-01A-11R-A36F-07 MYH10~OLFM4 fusion "MYH10," "OLFM4," chr17~chr13 8533972 53608483 6 -+ 1.56071 6 5 1 6 20 TCGA-X6-A8C5-01A-11R-A36F-07 MYH11~Nchr1~18039330 intergenic "MYH11," "-," chr16~chr1 15917411 18039330 169 ++ 3.053849 168 112 54 168 490 TCGA-X6-A8C5-01A-11R-A36F-07 MYH11~Nchr1~18043706 intergenic "MYH11," "-," chr16~chr1 15917411 18043706 32 ++ 2.602025 31 23 8 31 182 TCGA-X6-A8C5-01A-11R-A36F-07 Nchr11~65193772~Nchr11~65193830 intergenic "-," "-," chr11~chr11 65193772 65193830 29 -- 2.316242 26 26 0 26 4 TCGA-X6-A8C5-01A-11R-A36F-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 85 -+ 2.280034 30 0 30 30 22 TCGA-X6-A8C5-01A-11R-A36F-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 9 -+ 1.83102 8 2 6 8 46 TCGA-X6-A8C5-01A-11R-A36F-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 6 ++ 1.56071 6 5 1 6 6 TCGA-X6-A8C5-01A-11R-A36F-07 RNF152~Nchr18~59259856 intergenic "RNF152," "-," chr18~chr18 59560028 59259856 2 -- 0.693147 1 0 1 1 8 TCGA-X6-A8C5-01A-11R-A36F-07 RP11-335L9.1~Nchr3~177483365 intergenic "RP11-335L9.1," "-," chr3~chr3 177257281 177483365 2 ++ 0.693147 1 1 0 1 4 TCGA-X6-A8C5-01A-11R-A36F-07 TPM2~ACTG1 fusion "TPM2," "ACTG1," chr9~chr17 35685061 79478652 2 -- 0.693147 1 0 1 1 4 TCGA-X6-A8C5-01A-11R-A36F-07 ZFYVE28~CRMP1 fusion "ZFYVE28," "CRMP1," chr4~chr4 2420012 5858034 13 -- 1.925121 13 0 13 13 34 TCGA-X6-A8C5-01A-11R-A36F-07 ZNF177~TECR fusion "ZNF177," "TECR," chr19~chr19 9475624 14673337 17 ++ 1.262243 17 17 0 17 78 TCGA-X6-A8C5-01A-11R-A36F-07 ZNF644~Nchr4~23583114 intergenic "ZNF644," "-," chr1~chr4 91403042 23583114 5 -- 1.609438 5 4 1 5 22 TCGA-X6-A8C5-01A-11R-A36F-07 ZNF644~Nchr4~23584197 intergenic "ZNF644," "-," chr1~chr4 91403042 23584197 2 -- 0.693147 2 1 1 2 24 TCGA-DX-A6Z2-01A-12R-A36F-07 CASZ1~Nchr1~221843452 intergenic "CASZ1," "-," chr1~chr1 10725140 221843452 41 -+ 2.950782 35 12 23 35 84 TCGA-DX-A6Z2-01A-12R-A36F-07 HLA-E~HLA-A fusion "HLA-E," "HLA-A," chr6~chr6 30460360 29913228 10 ++ 0.325083 4 3 1 4 2 TCGA-DX-A6Z2-01A-12R-A36F-07 HN1~Nchr2~174296244 intergenic "HN1," "-," chr17~chr2 73143651 174296244 17 -- 1.14072 8 8 0 8 4 TCGA-DX-A6Z2-01A-12R-A36F-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 92 -+ 2.470522 41 0 40 41 50 TCGA-DX-A6Z2-01A-12R-A36F-07 Nchr15~21916043~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21916043 20876597 6 -- 1.791759 6 3 3 6 6 TCGA-DX-A6Z2-01A-12R-A36F-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 6 ++ 1.791759 5 3 2 5 8 TCGA-DX-A6Z2-01A-12R-A36F-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 25 -+ 2.601568 24 17 7 24 116 TCGA-DX-A6Z2-01A-12R-A36F-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 2 ++ 0.693147 2 2 0 2 12 TCGA-DX-A6Z2-01A-12R-A36F-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 101 ++ 2.610707 20 2 18 20 10 TCGA-DX-A6Z2-01A-12R-A36F-07 Nchr9~19200532~RPS6 intergenic "-," "RPS6," chr9~chr9 19200532 19378478 2 -- 0.693147 2 0 2 2 62 TCGA-DX-A6Z2-01A-12R-A36F-07 RP11-1102P16.1~Nchr8~72062125 intergenic "RP11-1102P16.1," "-," chr8~chr8 72447979 72062125 2 -- 0.693147 2 2 0 2 6 TCGA-DX-A6Z2-01A-12R-A36F-07 RP11-335L9.1~Nchr3~177483365 intergenic "RP11-335L9.1," "-," chr3~chr3 177264720 177483365 2 ++ 0.693147 2 1 1 2 6 TCGA-DX-A6Z2-01A-12R-A36F-07 RP11-335L9.1~Nchr3~177483365 intergenic "RP11-335L9.1," "-," chr3~chr3 177257281 177483365 5 ++ 1.609438 3 1 2 3 6 TCGA-DX-A6Z2-01A-12R-A36F-07 RP11-335L9.1~Nchr3~177483368 intergenic "RP11-335L9.1," "-," chr3~chr3 177257281 177483368 2 ++ 0.693147 1 0 1 1 6 TCGA-DX-A6Z2-01A-12R-A36F-07 RP11-371M22.1~Nchr5~113696642 intergenic "RP11-371M22.1," "-," chr5~chr5 113392868 113696642 2 ++ 0.693147 2 1 1 2 4 TCGA-DX-A6Z2-01A-12R-A36F-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 5 ++ 1.332179 5 4 1 5 16 TCGA-DX-A6Z2-01A-12R-A36F-07 TET3~Nchr15~78275852 intergenic "TET3," "-," chr2~chr15 74230293 78275852 27 +- 2.230193 24 17 7 24 44 TCGA-DX-A6Z2-01A-12R-A36F-07 ZNF287~Nchr13~100336982 intergenic "ZNF287," "-," chr17~chr13 16466460 100336982 5 -- 1.332179 5 3 2 5 8 TCGA-DX-A7EL-01A-12R-A36F-07 ARCN1~Nchr12~124043284 intergenic "ARCN1," "-," chr11~chr12 118455359 124043284 13 +- 2.351673 13 9 4 13 16 TCGA-DX-A7EL-01A-12R-A36F-07 ARCN1~Nchr12~124043941 intergenic "ARCN1," "-," chr11~chr12 118455359 124043941 2 +- 0.693147 2 2 0 2 8 TCGA-DX-A7EL-01A-12R-A36F-07 CTD-2337A12.1~CAST fusion "CTD-2337A12.1," "CAST," chr5~chr5 95715356 96011243 5 ++ 1.332179 3 2 1 3 4 TCGA-DX-A7EL-01A-12R-A36F-07 DAB1~Nchr1~58436537 intergenic "DAB1," "-," chr1~chr1 58715912 58436537 2 -- 0.693147 2 2 0 2 2 TCGA-DX-A7EL-01A-12R-A36F-07 IGHG1~IGHG3 fusion "IGHG1," "IGHG3," chr14~chr14 106208678 106236323 5 -- 1.923069 16 3 0 16 2 TCGA-DX-A7EL-01A-12R-A36F-07 IGHG4~IGHG1 fusion "IGHG4," "IGHG1," chr14~chr14 106091233 106208305 3 -- 1.098612 3 1 2 3 18 TCGA-DX-A7EL-01A-12R-A36F-07 IGHV3-15~IGHG1 fusion "IGHV3-15," "IGHG1," chr14~chr14 106610727 106209407 2 -- 0.693147 2 1 1 2 4 TCGA-DX-A7EL-01A-12R-A36F-07 IGHV3-53~IGHG1 fusion "IGHV3-53," "IGHG1," chr14~chr14 107049075 106209407 2 -- 0.693147 2 2 0 2 10 TCGA-DX-A7EL-01A-12R-A36F-07 IGKV4-1~AC096579.7 fusion "IGKV4-1," "IGKC,AC096579.7," chr2~chr2 89185136 89157196 3 +- 1.098612 3 3 0 3 32 TCGA-DX-A7EL-01A-12R-A36F-07 IGLV10-54~IGLJ3 fusion "IGLV10-54," "IGLJ3," chr22~chr22 22569656 23247166 9 ++ 2.043192 7 4 3 7 52 TCGA-DX-A7EL-01A-12R-A36F-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 79 -+ 2.228518 29 0 27 29 30 TCGA-DX-A7EL-01A-12R-A36F-07 Nchr12~104659073~Nchr12~104659181 intergenic "-," "-," chr12~chr12 104659073 104659181 2 -- 0.693147 2 2 0 2 22 TCGA-DX-A7EL-01A-12R-A36F-07 Nchr12~11343026~Nchr12~11652882 intergenic "-," "-," chr12~chr12 11343026 11652882 2 ++ 0.693147 2 1 1 2 4 TCGA-DX-A7EL-01A-12R-A36F-07 Nchr14~22476424~AE000662.7 intergenic "-," "AE000662.7," chr14~chr14 22476424 22970593 2 ++ 0.693147 2 1 1 2 16 TCGA-DX-A7EL-01A-12R-A36F-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 27 -+ 2.608982 27 15 12 27 254 TCGA-DX-A7EL-01A-12R-A36F-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145013721 5 -+ 1.332179 5 2 3 5 50 TCGA-DX-A7EL-01A-12R-A36F-07 Nchr1~76081538~SLC44A5 intergenic "-," "SLC44A5," chr1~chr1 76081538 75805315 5 -- 1.05492 3 3 0 3 2 TCGA-DX-A7EL-01A-12R-A36F-07 Nchr5~113441478~Nchr5~113696642 intergenic "-," "-," chr5~chr5 113441478 113696642 3 ++ 1.098612 3 1 2 3 4 TCGA-DX-A7EL-01A-12R-A36F-07 Nchr6~29895194~HLA-B intergenic "-," "HLA-B," chr6~chr6 29895194 31323335 2 -- 0.693147 2 1 1 2 184 TCGA-DX-A7EL-01A-12R-A36F-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40768381 11 ++ 1.893788 8 0 8 8 18 TCGA-DX-A7EL-01A-12R-A36F-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 301 ++ 2.777109 64 0 64 64 14 TCGA-DX-A7EL-01A-12R-A36F-07 Nchr7~40549639~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549639 40789033 4 ++ 1.386294 1 1 0 1 2 TCGA-DX-A7EL-01A-12R-A36F-07 Nchr9~135894806~Nchr9~135894902 intergenic "-," "-," chr9~chr9 135894806 135894902 4 -- 1.039721 3 3 0 3 2 TCGA-DX-A7EL-01A-12R-A36F-07 RP11-371M22.1~Nchr5~113696642 intergenic "RP11-371M22.1," "-," chr5~chr5 113392868 113696642 3 ++ 1.098612 2 2 0 2 4 TCGA-DX-A7EL-01A-12R-A36F-07 SLC36A4~Nchr11~92807277 intergenic "SLC36A4," "-," chr11~chr11 92887274 92807277 2 -+ 0.693147 2 0 2 2 6 TCGA-DX-A7EL-01A-12R-A36F-07 SLC36A4~Nchr11~92807288 intergenic "SLC36A4," "-," chr11~chr11 92887274 92807288 4 -+ 1.039721 4 3 1 4 4 TCGA-FX-A8OO-01A-11R-A36F-07 CTDSP1~RP5-1116C7.1 fusion "CTDSP1," "RP5-1116C7.1," chr2~chr1 219267128 172113577 5 +- 1.609438 5 2 3 5 2 TCGA-FX-A8OO-01A-11R-A36F-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31236793 31321968 2 -- 0.693147 2 1 1 2 36 TCGA-FX-A8OO-01A-11R-A36F-07 Nchr10~75502883~Nchr10~75504023 intergenic "-," "-," chr10~chr10 75502883 75504023 2 +- 0.693147 2 1 1 2 2 TCGA-FX-A8OO-01A-11R-A36F-07 Nchr11~27603245~RPS25 intergenic "-," "RPS25," chr11~chr11 27603245 118889038 39 -- 2.263156 34 8 26 34 888 TCGA-FX-A8OO-01A-11R-A36F-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 87 -+ 2.326902 34 0 34 34 18 TCGA-FX-A8OO-01A-11R-A36F-07 Nchr12~7759647~CLTA intergenic "-," "CLTA," chr12~chr9 7759647 36204115 3 -+ 0.636514 1 0 1 1 4 TCGA-FX-A8OO-01A-11R-A36F-07 Nchr12~95267416~TMCC3 intergenic "-," "TMCC3," chr12~chr12 95267416 94976314 6 -- 1.791759 6 6 0 6 6 TCGA-FX-A8OO-01A-11R-A36F-07 Nchr15~70878214~Nchr15~70423230 intergenic "-," "-," chr15~chr15 70878214 70423230 11 -- 1.972247 11 5 6 11 26 TCGA-FX-A8OO-01A-11R-A36F-07 Nchr15~70878214~Nchr15~70640615 intergenic "-," "-," chr15~chr15 70878214 70640615 4 -- 1.386294 4 1 3 4 2 TCGA-FX-A8OO-01A-11R-A36F-07 Nchr16~69790808~Nchr16~69790900 intergenic "-," "-," chr16~chr16 69790808 69790900 3 -- 0.636514 3 3 0 3 2 TCGA-FX-A8OO-01A-11R-A36F-07 Nchr16~73925550~Nchr16~73714139 intergenic "-," "-," chr16~chr16 73925550 73714139 37 -- 2.608481 23 16 7 23 10 TCGA-FX-A8OO-01A-11R-A36F-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 5 ++ 1.332179 2 0 2 2 62 TCGA-FX-A8OO-01A-11R-A36F-07 Nchr1~192685469~Nchr1~192685560 intergenic "-," "-," chr1~chr1 192685469 192685560 9 -- 1.889159 6 6 0 6 2 TCGA-FX-A8OO-01A-11R-A36F-07 Nchr1~35816322~RPL5 intergenic "-," "RPL5," chr1~chr1 35816322 93297597 2 -+ 0.693147 2 0 2 2 36 TCGA-FX-A8OO-01A-11R-A36F-07 Nchr1~99473941~RPL5 intergenic "-," "RPL5," chr1~chr1 99473941 93306108 2 ++ 0.693147 1 1 0 1 70 TCGA-FX-A8OO-01A-11R-A36F-07 Nchr2~177065915~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065915 177065788 5 ++ 1.332179 4 0 4 4 4 TCGA-FX-A8OO-01A-11R-A36F-07 Nchr2~20062807~Nchr2~19861347 intergenic "-," "-," chr2~chr2 20062807 19861347 4 -- 1.039721 2 0 2 2 2 TCGA-FX-A8OO-01A-11R-A36F-07 Nchr3~73027668~Nchr3~73027522 intergenic "-," "-," chr3~chr3 73027668 73027522 3 ++ 1.098612 3 0 3 3 2 TCGA-FX-A8OO-01A-11R-A36F-07 Nchr5~93018536~NPM1 intergenic "-," "NPM1," chr5~chr5 93018536 170837597 3 -- 0.636514 3 3 0 3 14 TCGA-FX-A8OO-01A-11R-A36F-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 5 -- 1.332179 3 3 0 3 2 TCGA-FX-A8OO-01A-11R-A36F-07 Nchr6~113903020~Nchr6~113902892 intergenic "-," "-," chr6~chr6 113903020 113902892 8 ++ 1.073543 8 8 0 8 2 TCGA-FX-A8OO-01A-11R-A36F-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 15 ++ 1.986732 15 15 0 15 20 TCGA-FX-A8OO-01A-11R-A36F-07 Nchr6~8558876~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8558876 8784424 6 ++ 1.56071 3 0 3 3 6 TCGA-FX-A8OO-01A-11R-A36F-07 Nchr7~91282045~RP11-142A5.1 intergenic "-," "RP11-142A5.1," chr7~chr7 91282045 91010182 3 -- 0.636514 3 3 0 3 8 TCGA-FX-A8OO-01A-11R-A36F-07 Nchr8~92498656~RP11-122C21.1 intergenic "-," "RP11-122C21.1," chr8~chr8 92498656 92784075 13 ++ 2.245035 11 7 4 11 36 TCGA-FX-A8OO-01A-11R-A36F-07 TPT1~Nchr6~144522012 intergenic "TPT1," "-," chr13~chr6 45914301 144522012 28 -- 0.736309 26 26 0 26 28 TCGA-X6-A8C4-01A-11R-A36F-07 C3orf32~Nchr1~9062811 intergenic "C3orf32," "-," chr3~chr1 8786536 9062811 10 -+ 2.163956 9 2 7 9 30 TCGA-X6-A8C4-01A-11R-A36F-07 CHL1~Nchr3~157620 intergenic "CHL1," "-," chr3~chr3 391226 157620 2 +- 0.693147 2 1 1 2 6 TCGA-X6-A8C4-01A-11R-A36F-07 DCAF7~AC003051.1 fusion "DCAF7," "AC003051.1," chr17~chr17 61628176 67590928 3 ++ 0.636514 2 2 0 2 10 TCGA-X6-A8C4-01A-11R-A36F-07 GALNT11~PTPRN2 fusion "GALNT11," "PTPRN2," chr7~chr7 151722969 158282477 6 +- 1.56071 3 2 1 3 6 TCGA-X6-A8C4-01A-11R-A36F-07 GAPDH~NchrX~46299827 intergenic "GAPDH," "-," chr12~chrX 6646369 46299827 8 -- 1.213008 1 1 0 1 398 TCGA-X6-A8C4-01A-11R-A36F-07 HSDL2~Nchr9~106109688 intergenic "HSDL2," "-," chr9~chr9 115171301 106109688 3 ++ 1.098612 3 2 1 3 4 TCGA-X6-A8C4-01A-11R-A36F-07 LSAMP~Nchr3~116018482 intergenic "LSAMP," "-," chr3~chr3 115726132 116018482 9 ++ 1.735126 9 1 8 9 8 TCGA-X6-A8C4-01A-11R-A36F-07 MAP2K4~Nchr17~10511671 intergenic "MAP2K4," "-," chr17~chr17 12032604 10511671 2 ++ 0.693147 2 2 0 2 8 TCGA-X6-A8C4-01A-11R-A36F-07 MPDU1~DNAH9 fusion "MPDU1,AC113189.5," "DNAH9," chr17~chr17 7487283 11790142 16 ++ 2.100679 14 5 9 14 48 TCGA-X6-A8C4-01A-11R-A36F-07 MPDU1~DNAH9 fusion "MPDU1," "DNAH9," chr17~chr17 7489115 11790142 2 ++ 0.693147 2 1 1 2 52 TCGA-X6-A8C4-01A-11R-A36F-07 NCOR2~UBC fusion "NCOR2," "UBC," chr12~chr12 125051854 125398320 3 -- 1.098612 3 0 3 3 2 TCGA-X6-A8C4-01A-11R-A36F-07 Nchr11~47213097~RPS20 intergenic "-," "RPS20," chr11~chr8 47213097 56986962 2 +- 0.693147 2 0 2 2 76 TCGA-X6-A8C4-01A-11R-A36F-07 Nchr14~58283422~SLC35F4 intergenic "-," "SLC35F4," chr14~chr14 58283422 58060842 20 -- 2.3719 18 13 5 18 48 TCGA-X6-A8C4-01A-11R-A36F-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 3 ++ 1.098612 2 0 2 2 8 TCGA-X6-A8C4-01A-11R-A36F-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 9 ++ 1.676988 8 3 5 8 12 TCGA-X6-A8C4-01A-11R-A36F-07 Nchr17~13937325~AC015842.1 intergenic "-," "AC015842.1," chr17~chr17 13937325 13680666 2 -- 0.693147 1 1 0 1 4 TCGA-X6-A8C4-01A-11R-A36F-07 Nchr19~32260208~Nchr19~30399195 intergenic "-," "-," chr19~chr19 32260208 30399195 3 -- 0.636514 3 2 1 3 2 TCGA-X6-A8C4-01A-11R-A36F-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 39 -+ 2.934521 37 23 14 37 218 TCGA-X6-A8C4-01A-11R-A36F-07 Nchr2~53560842~Nchr2~53137162 intergenic "-," "-," chr2~chr2 53560842 53137162 10 -- 1.313834 7 6 1 7 24 TCGA-X6-A8C4-01A-11R-A36F-07 Nchr5~117066363~CTD-3179P9.1 intergenic "-," "CTD-3179P9.1," chr5~chr5 117066363 117331303 2 ++ 0.693147 2 0 2 2 30 TCGA-X6-A8C4-01A-11R-A36F-07 Nchr5~117066363~CTD-3179P9.1 intergenic "-," "CTD-3179P9.1," chr5~chr5 117066363 117523160 3 ++ 1.098612 3 0 3 3 52 TCGA-X6-A8C4-01A-11R-A36F-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 10 ++ 1.504788 9 9 0 9 6 TCGA-X6-A8C4-01A-11R-A36F-07 Nchr9~22301706~C9orf93 intergenic "-," "C9orf93," chr9~chr9 22301706 15697851 6 +- 1.56071 5 4 1 5 6 TCGA-X6-A8C4-01A-11R-A36F-07 Nchr9~22301706~C9orf93 intergenic "-," "C9orf93," chr9~chr9 22301706 15723095 8 +- 1.906155 8 7 1 8 4 TCGA-X6-A8C4-01A-11R-A36F-07 NchrX~56757835~NchrX~56844004 intergenic "-," "-," chrX~chrX 56757835 56844004 9 -- 1.427061 9 2 7 9 562 TCGA-X6-A8C4-01A-11R-A36F-07 POLE4~Nchr2~75503636 intergenic "POLE4," "-," chr2~chr2 75187273 75503636 4 ++ 1.039721 4 4 0 4 4 TCGA-X6-A8C4-01A-11R-A36F-07 RAB21~CRADD fusion "RAB21," "CRADD," chr12~chr12 72176438 94253095 2 ++ 0.693147 2 0 2 2 2 TCGA-X6-A8C4-01A-11R-A36F-07 RHOT1~Nchr17~48066780 intergenic "RHOT1," "-," chr17~chr17 30510291 48066780 6 +- 1.098612 4 2 2 4 18 TCGA-X6-A8C4-01A-11R-A36F-07 RP11-215N21.1~Nchr10~109566452 intergenic "RP11-215N21.1," "-," chr10~chr10 109800119 109566452 2 -- 0.693147 2 1 1 2 6 TCGA-X6-A8C4-01A-11R-A36F-07 RPL5~Nchr1~35817033 intergenic "RPL5," "-," chr1~chr1 93306196 35817033 2 ++ 0.693147 1 0 1 1 8 TCGA-X6-A8C4-01A-11R-A36F-07 TANC2~Nchr12~89516852 intergenic "TANC2," "-," chr17~chr12 61392030 89516852 5 +- 1.609438 4 2 2 4 18 TCGA-X6-A8C4-01A-11R-A36F-07 TANC2~Nchr12~89569051 intergenic "TANC2," "-," chr17~chr12 61392030 89569051 19 +- 2.37862 15 7 8 15 18 TCGA-X6-A8C4-01A-11R-A36F-07 TANC2~RP11-20E24.1 fusion "TANC2," "RP11-20E24.1," chr17~chr12 61086987 76956075 67 ++ 2.633915 42 21 21 42 100 TCGA-X6-A8C4-01A-11R-A36F-07 TFB1M~Nchr6~158233130 intergenic "TFB1M," "-," chr6~chr6 155606292 158233130 7 -- 1.747868 7 2 5 7 18 TCGA-X6-A8C4-01A-11R-A36F-07 TP53~MYH2 fusion "WRAP53,TP53," "MYH2," chr17~chr17 7590695 10452734 2 -- 0.693147 2 2 0 2 12 TCGA-X6-A8C4-01A-11R-A36F-07 TUBGCP6~TCF7L1 fusion "TUBGCP6," "TCF7L1," chr22~chr2 50667833 85529607 4 -+ 1.386294 3 3 0 3 4 TCGA-X6-A8C4-01A-11R-A36F-07 VTA1~ARID1B fusion "VTA1," "ARID1B," chr6~chr6 142491558 157340897 15 ++ 2.523211 15 5 10 15 24 TCGA-X6-A8C4-01A-11R-A36F-07 ZFP30~Nchr19~29226759 intergenic "ZFP30," "-," chr19~chr19 38138715 29226759 6 -- 1.329661 6 3 3 6 16 TCGA-DX-A6Z0-01A-13R-A36F-07 ANXA4~Nchr5~71813393 intergenic "ANXA4," "-," chr2~chr5 70047953 71813393 28 ++ 2.205598 26 16 10 26 72 TCGA-DX-A6Z0-01A-13R-A36F-07 ANXA4~Nchr5~71815136 intergenic "ANXA4," "-," chr2~chr5 70047953 71815136 214 ++ 3.038725 207 116 91 207 686 TCGA-DX-A6Z0-01A-13R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94039599 3 -+ 1.098612 3 2 1 3 6 TCGA-DX-A6Z0-01A-13R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267040 94052269 2 -+ 0.693147 1 1 0 1 4 TCGA-DX-A6Z0-01A-13R-A36F-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94047050 189867030 5 ++ 1.332179 3 1 2 3 2 TCGA-DX-A6Z0-01A-13R-A36F-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94052430 189868137 8 ++ 1.732868 4 0 4 4 2 TCGA-DX-A6Z0-01A-13R-A36F-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189868190 94049853 4 ++ 1.039721 4 2 2 4 2 TCGA-DX-A6Z0-01A-13R-A36F-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 3 +- 1.098612 3 2 1 3 8 TCGA-DX-A6Z0-01A-13R-A36F-07 EXOC2~Nchr6~7452798 intergenic "EXOC2," "-," chr6~chr6 693019 7452798 12 -+ 2.138333 8 3 5 8 48 TCGA-DX-A6Z0-01A-13R-A36F-07 FBXL4~Nchr6~98585429 intergenic "FBXL4," "-," chr6~chr6 99395682 98585429 3 -- 1.098612 3 0 3 3 2 TCGA-DX-A6Z0-01A-13R-A36F-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31236722 31321935 2 -- 0.693147 1 1 0 1 1778 TCGA-DX-A6Z0-01A-13R-A36F-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 85 -- 2.410629 84 83 1 84 8 TCGA-DX-A6Z0-01A-13R-A36F-07 HSPD1~Nchr12~56905374 intergenic "HSPD1," "-," chr2~chr12 198358208 56905374 4 -+ 1.386294 3 3 0 3 14 TCGA-DX-A6Z0-01A-13R-A36F-07 LAMA4~Nchr3~153138490 intergenic "LAMA4," "-," chr6~chr3 112479934 153138490 5 -+ 1.05492 4 1 3 4 6 TCGA-DX-A6Z0-01A-13R-A36F-07 LMBR1~UBE3C fusion "LMBR1," "UBE3C," chr7~chr7 156685622 156979528 2 -+ 0.693147 2 0 2 2 4 TCGA-DX-A6Z0-01A-13R-A36F-07 NRK~NchrX~105709918 intergenic "NRK," "-," chrX~chrX 105075112 105709918 16 +- 2.393312 15 9 6 15 22 TCGA-DX-A6Z0-01A-13R-A36F-07 Nchr10~77530612~C10orf11 intergenic "-," "C10orf11," chr10~chr10 77530612 77795766 12 ++ 2.094729 10 3 7 10 30 TCGA-DX-A6Z0-01A-13R-A36F-07 Nchr10~91738461~SNRPD2 intergenic "-," "SNRPD2," chr10~chr19 91738461 46195211 2 -- 0.693147 2 0 2 2 18 TCGA-DX-A6Z0-01A-13R-A36F-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 20 -+ 2.527519 9 0 9 9 16 TCGA-DX-A6Z0-01A-13R-A36F-07 Nchr14~45066112~Nchr14~44862941 intergenic "-," "-," chr14~chr14 45066112 44862941 5 -- 1.332179 1 0 1 1 4 TCGA-DX-A6Z0-01A-13R-A36F-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 4 ++ 1.039721 4 1 3 4 4 TCGA-DX-A6Z0-01A-13R-A36F-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 4 ++ 1.386294 4 2 2 4 12 TCGA-DX-A6Z0-01A-13R-A36F-07 Nchr17~57584223~VMP1 intergenic "-," "VMP1," chr17~chr17 57584223 57886157 3 ++ 1.098612 3 2 1 3 6 TCGA-DX-A6Z0-01A-13R-A36F-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 34 -+ 2.785008 30 19 11 30 158 TCGA-DX-A6Z0-01A-13R-A36F-07 Nchr1~55827238~RP11-466L17.1 intergenic "-," "RP11-466L17.1," chr1~chr1 55827238 56080594 5 ++ 1.332179 3 2 1 3 6 TCGA-DX-A6Z0-01A-13R-A36F-07 Nchr20~33104213~DYNLRB1 intergenic "-," "DYNLRB1," chr20~chr20 33104213 33114109 3 -+ 1.098612 1 1 0 1 16 TCGA-DX-A6Z0-01A-13R-A36F-07 Nchr2~65710286~Nchr2~65918916 intergenic "-," "-," chr2~chr2 65710286 65918916 2 ++ 0.693147 2 1 1 2 4 TCGA-DX-A6Z0-01A-13R-A36F-07 Nchr2~81775871~Nchr2~82024942 intergenic "-," "-," chr2~chr2 81775871 82024942 3 ++ 0.636514 3 1 2 3 12 TCGA-DX-A6Z0-01A-13R-A36F-07 Nchr2~81775871~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81775871 82075877 4 ++ 1.386294 4 2 2 4 6 TCGA-DX-A6Z0-01A-13R-A36F-07 Nchr3~112316148~Nchr3~112316243 intergenic "-," "-," chr3~chr3 112316148 112316243 2 -- 0.693147 2 2 0 2 2 TCGA-DX-A6Z0-01A-13R-A36F-07 Nchr8~80182258~Nchr8~79858921 intergenic "-," "-," chr8~chr8 80182258 79858921 2 -- 0.693147 2 1 1 2 2 TCGA-DX-A6Z0-01A-13R-A36F-07 PTPRN2~Nchr7~156809284 intergenic "PTPRN2," "-," chr7~chr7 157926369 156809284 38 -- 2.620221 37 19 18 37 52 TCGA-DX-A6Z0-01A-13R-A36F-07 PTPRS~ZNF627 fusion "PTPRS," "ZNF627," chr19~chr19 5274210 11725342 17 -+ 2.476247 17 10 7 17 38 TCGA-DX-A6Z0-01A-13R-A36F-07 RP11-386G11.10~TUBA1C fusion "RP11-386G11.10,TUBA1B,TUBA1B,RP11-386G11.10," "TUBA1C,RP11-161H23.5," chr12~chr12 49521993 49666750 6 -- 1.56071 6 5 1 6 64 TCGA-DX-A6Z0-01A-13R-A36F-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 2 ++ 0.693147 2 1 1 2 10 TCGA-DX-A6Z0-01A-13R-A36F-07 RPL5~Nchr1~35817008 intergenic "RPL5," "-," chr1~chr1 93306196 35817008 9 ++ 1.676988 1 0 1 1 6 TCGA-DX-A6Z0-01A-13R-A36F-07 STX6~SMYD3 fusion "STX6," "SMYD3," chr1~chr1 180991775 246093239 3 -- 1.098612 3 2 1 3 26 TCGA-DX-A6Z0-01A-13R-A36F-07 TPST1~GS1-124K5.4 fusion "TPST1," "GS1-124K5.4," chr7~chr7 65751696 65960242 7 ++ 1.549826 6 3 3 6 20 TCGA-DX-A6Z0-01A-13R-A36F-07 TSPAN18~NchrX~107176350 intergenic "TSPAN18," "-," chr11~chrX 44882020 107176350 6 +- 1.56071 3 2 1 3 12 TCGA-DX-A6Z0-01A-13R-A36F-07 TSPAN18~NchrX~107177910 intergenic "TSPAN18," "-," chr11~chrX 44882020 107177910 5 +- 1.609438 4 1 3 4 16 TCGA-DX-A6Z0-01A-13R-A36F-07 TSPAN18~TEX13B fusion "TSPAN18," "TEX13B," chr11~chrX 44882020 107225389 5 +- 1.609438 5 3 2 5 6 TCGA-DX-A6Z0-01A-13R-A36F-07 UBE3C~PTPRN2 fusion "UBE3C," "PTPRN2," chr7~chr7 156932032 157931207 11 +- 2.145842 11 1 10 11 50 TCGA-DX-A7EM-01A-11R-A36F-07 ACTB~Nchr3~175695422 intergenic "ACTB," "-," chr7~chr3 5567635 175695422 3 -- 0.636514 3 0 3 3 22 TCGA-DX-A7EM-01A-11R-A36F-07 CPSF6~C9orf3 fusion "CPSF6," "C9orf3," chr12~chr9 69656342 97848964 2 ++ 0.693147 2 1 1 2 2 TCGA-DX-A7EM-01A-11R-A36F-07 CTD-2337A12.1~CAST fusion "CTD-2337A12.1," "CAST," chr5~chr5 95715356 96011243 9 ++ 1.889159 6 3 3 6 2 TCGA-DX-A7EM-01A-11R-A36F-07 DNAJC7~AC005726.6 fusion "NKIRAS2,DNAJC7," "AC005726.6," chr17~chr17 40169358 26932233 21 -- 1.496697 19 19 0 19 72 TCGA-DX-A7EM-01A-11R-A36F-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 234 -- 2.171721 233 233 0 233 106 TCGA-DX-A7EM-01A-11R-A36F-07 NOP56~Nchr12~79952582 intergenic "NOP56,NOP56," "-," chr20~chr12 2637857 79952582 3 ++ 1.098612 3 1 2 3 2 TCGA-DX-A7EM-01A-11R-A36F-07 Nchr10~123072730~Nchr10~122823681 intergenic "-," "-," chr10~chr10 123072730 122823681 7 -- 1.747868 6 2 4 6 10 TCGA-DX-A7EM-01A-11R-A36F-07 Nchr10~123072730~Nchr10~122845225 intergenic "-," "-," chr10~chr10 123072730 122845225 5 -- 1.332179 5 4 1 5 14 TCGA-DX-A7EM-01A-11R-A36F-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 70 -+ 2.559461 32 0 32 32 28 TCGA-DX-A7EM-01A-11R-A36F-07 Nchr12~20342377~PDE3A intergenic "-," "PDE3A," chr12~chr12 20342377 20709594 12 ++ 2.210254 6 6 0 6 2 TCGA-DX-A7EM-01A-11R-A36F-07 Nchr12~24366277~SOX5 intergenic "-," "SOX5," chr12~chr12 24366277 24048958 3 -- 1.098612 3 3 0 3 2 TCGA-DX-A7EM-01A-11R-A36F-07 Nchr13~48092921~Nchr13~47825494 intergenic "-," "-," chr13~chr13 48092921 47825494 3 -- 1.098612 2 0 2 2 6 TCGA-DX-A7EM-01A-11R-A36F-07 Nchr15~21911290~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21911290 20876597 4 -- 1.386294 4 3 1 4 64 TCGA-DX-A7EM-01A-11R-A36F-07 Nchr15~21916043~NBEA intergenic "-," "NBEA," chr15~chr13 21916043 35683427 6 -+ 1.098612 6 6 0 6 22 TCGA-DX-A7EM-01A-11R-A36F-07 Nchr15~21916043~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21916043 20876597 57 -- 2.993556 52 16 36 52 108 TCGA-DX-A7EM-01A-11R-A36F-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 2 ++ 0.693147 1 0 1 1 8 TCGA-DX-A7EM-01A-11R-A36F-07 Nchr1~212732133~Nchr1~212732108 intergenic "-," "-," chr1~chr1 212732133 212732108 5 ++ 1.332179 5 2 3 5 2 TCGA-DX-A7EM-01A-11R-A36F-07 Nchr1~76081538~SLC44A5 intergenic "-," "SLC44A5," chr1~chr1 76081538 75805315 8 -- 1.667462 6 5 1 6 2 TCGA-DX-A7EM-01A-11R-A36F-07 Nchr3~123752660~KALRN intergenic "-," "KALRN," chr3~chr3 123752660 123953676 3 ++ 1.098612 3 1 2 3 22 TCGA-DX-A7EM-01A-11R-A36F-07 Nchr3~187872040~LPP intergenic "-," "LPP," chr3~chr3 187872040 188123900 11 ++ 1.893788 9 0 9 9 4 TCGA-DX-A7EM-01A-11R-A36F-07 Nchr3~59556125~FHIT intergenic "-," "FHIT," chr3~chr3 59556125 59795458 10 ++ 1.834372 10 5 5 10 46 TCGA-DX-A7EM-01A-11R-A36F-07 Nchr4~154926613~Nchr4~155128120 intergenic "-," "-," chr4~chr4 154926613 155128120 3 ++ 1.098612 1 1 0 1 10 TCGA-DX-A7EM-01A-11R-A36F-07 Nchr5~113441478~Nchr5~113696642 intergenic "-," "-," chr5~chr5 113441478 113696642 5 ++ 1.609438 3 3 0 3 10 TCGA-DX-A7EM-01A-11R-A36F-07 Nchr5~155108550~SGCD intergenic "-," "SGCD," chr5~chr5 155108550 155550866 3 ++ 1.098612 3 2 1 3 10 TCGA-DX-A7EM-01A-11R-A36F-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40768381 15 ++ 2.153532 10 0 10 10 30 TCGA-DX-A7EM-01A-11R-A36F-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 326 ++ 2.863653 76 8 68 76 28 TCGA-DX-A7EM-01A-11R-A36F-07 NchrX~45212957~NchrX~45461542 intergenic "-," "-," chrX~chrX 45212957 45461542 2 ++ 0.693147 2 1 1 2 6 TCGA-DX-A7EM-01A-11R-A36F-07 RP11-335L9.1~Nchr3~177483368 intergenic "RP11-335L9.1," "-," chr3~chr3 177159898 177483368 2 ++ 0.693147 2 2 0 2 18 TCGA-DX-A7EM-01A-11R-A36F-07 RP11-335L9.1~RP11-91K9.1 fusion "RP11-335L9.1," "RP11-91K9.1," chr3~chr3 177347343 177613401 3 ++ 1.098612 3 1 2 3 6 TCGA-DX-A7EM-01A-11R-A36F-07 RP11-371M22.1~Nchr5~113696642 intergenic "RP11-371M22.1," "-," chr5~chr5 113392868 113696642 3 ++ 1.098612 3 0 3 3 8 TCGA-DX-A7EM-01A-11R-A36F-07 RP11-424D14.1~Nchr1~69898825 intergenic "RP11-424D14.1," "-," chr1~chr1 69521730 69898825 3 ++ 0.636514 3 0 3 3 12 TCGA-DX-A7EM-01A-11R-A36F-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 2 ++ 0.693147 2 1 1 2 4 TCGA-X6-A8C7-01A-11R-A36F-07 C15orf57~CBX3 fusion "C15orf57," "CBX3," chr15~chr7 40854971 26241389 3 -+ 1.098612 2 1 1 2 2 TCGA-X6-A8C7-01A-11R-A36F-07 CTDSP1~RP5-1116C7.1 fusion "CTDSP1," "RP5-1116C7.1," chr2~chr1 219267128 172113577 2 +- 0.693147 2 1 1 2 2 TCGA-X6-A8C7-01A-11R-A36F-07 Nchr12~104659086~Nchr12~104659189 intergenic "-," "-," chr12~chr12 104659086 104659189 3 -- 0.636514 3 3 0 3 34 TCGA-X6-A8C7-01A-11R-A36F-07 Nchr12~24366277~SOX5 intergenic "-," "SOX5," chr12~chr12 24366277 24048958 2 -- 0.693147 2 2 0 2 6 TCGA-X6-A8C7-01A-11R-A36F-07 Nchr14~58332441~SLC35F4 intergenic "-," "SLC35F4," chr14~chr14 58332441 58060842 7 -- 1.747868 7 3 4 7 24 TCGA-X6-A8C7-01A-11R-A36F-07 Nchr14~90085372~FOXN3 intergenic "-," "FOXN3," chr14~chr14 90085372 89878834 2 -- 0.693147 2 2 0 2 8 TCGA-X6-A8C7-01A-11R-A36F-07 Nchr15~70640197~Nchr15~70423230 intergenic "-," "-," chr15~chr15 70640197 70423230 3 -- 1.098612 2 2 0 2 6 TCGA-X6-A8C7-01A-11R-A36F-07 Nchr15~70878214~Nchr15~70423230 intergenic "-," "-," chr15~chr15 70878214 70423230 13 -- 1.524707 13 6 7 13 22 TCGA-X6-A8C7-01A-11R-A36F-07 Nchr15~70878214~Nchr15~70427651 intergenic "-," "-," chr15~chr15 70878214 70427651 6 -- 1.56071 5 4 1 5 36 TCGA-X6-A8C7-01A-11R-A36F-07 Nchr15~70878214~Nchr15~70430487 intergenic "-," "-," chr15~chr15 70878214 70430487 3 -- 0.636514 3 2 1 3 4 TCGA-X6-A8C7-01A-11R-A36F-07 Nchr15~70878214~Nchr15~70640258 intergenic "-," "-," chr15~chr15 70878214 70640258 25 -- 2.567046 11 1 10 11 28 TCGA-X6-A8C7-01A-11R-A36F-07 Nchr15~70878214~TLE3 intergenic "-," "TLE3," chr15~chr15 70878214 70388600 3 -- 1.098612 3 1 2 3 2 TCGA-X6-A8C7-01A-11R-A36F-07 Nchr16~79619777~Nchr16~79246798 intergenic "-," "-," chr16~chr16 79619777 79246798 11 -- 2.019815 11 4 7 11 10 TCGA-X6-A8C7-01A-11R-A36F-07 Nchr16~85205413~LBP intergenic "-," "LBP," chr16~chr20 85205413 37005267 27 ++ 2.362282 26 17 9 26 68 TCGA-X6-A8C7-01A-11R-A36F-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 2 ++ 0.693147 2 0 2 2 14 TCGA-X6-A8C7-01A-11R-A36F-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 8 ++ 1.559581 8 3 5 8 8 TCGA-X6-A8C7-01A-11R-A36F-07 Nchr17~5740569~WSCD1 intergenic "-," "WSCD1," chr17~chr17 5740569 5983691 8 ++ 1.906155 5 0 5 5 10 TCGA-X6-A8C7-01A-11R-A36F-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 16 -+ 2.599302 15 8 7 15 90 TCGA-X6-A8C7-01A-11R-A36F-07 Nchr1~35816322~RPL5 intergenic "-," "RPL5," chr1~chr1 35816322 93297597 3 -+ 1.098612 2 0 2 2 6 TCGA-X6-A8C7-01A-11R-A36F-07 Nchr1~72749088~Nchr1~72999447 intergenic "-," "-," chr1~chr1 72749088 72999447 2 ++ 0.693147 1 0 1 1 4 TCGA-X6-A8C7-01A-11R-A36F-07 Nchr20~58755971~Nchr20~59102445 intergenic "-," "-," chr20~chr20 58755971 59102445 3 ++ 1.098612 2 2 0 2 2 TCGA-X6-A8C7-01A-11R-A36F-07 Nchr22~48082687~Nchr22~48409499 intergenic "-," "-," chr22~chr22 48082687 48409499 3 ++ 1.098612 3 2 1 3 2 TCGA-X6-A8C7-01A-11R-A36F-07 Nchr2~122702023~Nchr2~122978395 intergenic "-," "-," chr2~chr2 122702023 122978395 3 ++ 1.098612 1 1 0 1 10 TCGA-X6-A8C7-01A-11R-A36F-07 Nchr2~139258325~Nchr2~139057107 intergenic "-," "-," chr2~chr2 139258325 139057107 2 -- 0.693147 2 2 0 2 6 TCGA-X6-A8C7-01A-11R-A36F-07 Nchr2~65943236~Nchr2~66149072 intergenic "-," "-," chr2~chr2 65943236 66149072 2 ++ 0.693147 2 0 2 2 20 TCGA-X6-A8C7-01A-11R-A36F-07 Nchr6~8558876~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8558876 8784424 7 ++ 1.475076 4 3 1 4 2 TCGA-X6-A8C7-01A-11R-A36F-07 Nchr7~91282045~RP11-142A5.1 intergenic "-," "RP11-142A5.1," chr7~chr7 91282045 91010182 4 -- 1.386294 4 3 1 4 8 TCGA-X6-A8C7-01A-11R-A36F-07 NchrX~124318557~ODZ1 intergenic "-," "ODZ1," chrX~chrX 124318557 124097666 6 -- 1.56071 6 5 1 6 30 TCGA-X6-A8C7-01A-11R-A36F-07 RP1-45C12.1~Nchr1~170776745 intergenic "RP1-45C12.1," "-," chr1~chr1 171137243 170776745 7 -- 1.747868 5 4 1 5 6 TCGA-X6-A8C7-01A-11R-A36F-07 RP11-123O10.4~GRIP1 fusion "RP11-123O10.4," "GRIP1," chr12~chr12 67462830 66990707 2 -- 0.693147 2 1 1 2 10 TCGA-X6-A8C7-01A-11R-A36F-07 RP11-348F1.2~NchrX~51381116 intergenic "RP11-348F1.2," "-," chrX~chrX 51139533 51381116 5 ++ 0.950271 4 2 2 4 4 TCGA-X6-A8C7-01A-11R-A36F-07 RP11-634B7.4~TRIM58 fusion "RP11-634B7.4,RP11-978I15.10," "TRIM58," chr1~chr1 247803731 248023919 6 ++ 1.56071 6 1 5 6 22 TCGA-X6-A8C7-01A-11R-A36F-07 RPS6~Nchr9~19200482 intergenic "RPS6," "-," chr9~chr9 19376625 19200482 3 ++ 1.098612 2 2 0 2 16 TCGA-X6-A8C7-01A-11R-A36F-07 SS18~SSX1 fusion "SS18," "SSX1," chr18~chrX 23612363 48123217 334 -+ 3.09327 324 196 128 324 538 TCGA-X6-A8C7-01A-11R-A36F-07 TERF2IP~Nchr16~75938999 intergenic "TERF2IP," "-," chr16~chr16 75688295 75938999 5 ++ 1.609438 5 1 4 5 6 TCGA-X6-A8C7-01A-11R-A36F-07 ZIC3~NchrX~137062449 intergenic "ZIC3," "-," chrX~chrX 136651224 137062449 4 ++ 1.039721 4 0 4 4 4 TCGA-QQ-A5VB-01A-11R-A36F-07 BNC2~AC022596.6 fusion "BNC2," "AC022596.6," chr9~chr17 16665063 16722162 7 -- 1.277034 5 5 0 5 20 TCGA-QQ-A5VB-01A-11R-A36F-07 BNC2~AC022596.6 fusion "BNC2," "AC022596.6," chr9~chr17 16704751 16722162 22 -- 2.326543 21 18 3 21 62 TCGA-QQ-A5VB-01A-11R-A36F-07 BNC2~AC022596.6 fusion "BNC2," "AC022596.6," chr9~chr17 16727795 16722162 54 -- 2.595986 47 29 18 47 302 TCGA-QQ-A5VB-01A-11R-A36F-07 BNC2~AC022596.6 fusion "BNC2," "AC022596.6," chr9~chr17 16870644 16722162 5 -- 1.332179 5 5 0 5 22 TCGA-QQ-A5VB-01A-11R-A36F-07 CALR3~PLCB1 fusion "CALR3,MED26," "PLCB1," chr19~chr20 16738683 8608941 27 -+ 2.702313 25 12 13 25 44 TCGA-QQ-A5VB-01A-11R-A36F-07 GBP1~Nchr1~89892309 intergenic "GBP1," "-," chr1~chr1 89518499 89892309 7 -- 1.549826 7 6 1 7 10 TCGA-QQ-A5VB-01A-11R-A36F-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 949 -- 2.285943 948 943 5 948 230 TCGA-QQ-A5VB-01A-11R-A36F-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238905 31324034 5 -- 1.609438 3 3 0 3 4 TCGA-QQ-A5VB-01A-11R-A36F-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31239106 31324184 2 -- 0.693147 1 1 0 1 150 TCGA-QQ-A5VB-01A-11R-A36F-07 NOP56~Nchr12~79952582 intergenic "NOP56,NOP56," "-," chr20~chr12 2637857 79952582 3 ++ 0.636514 3 0 3 3 12 TCGA-QQ-A5VB-01A-11R-A36F-07 Nchr11~27603266~RPS25 intergenic "-," "RPS25," chr11~chr11 27603266 118888759 2 -- 0.693147 2 1 1 2 138 TCGA-QQ-A5VB-01A-11R-A36F-07 Nchr11~47213097~RPS20 intergenic "-," "RPS20," chr11~chr8 47213097 56986962 2 +- 0.693147 1 0 1 1 28 TCGA-QQ-A5VB-01A-11R-A36F-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 161 -+ 2.535328 72 0 72 72 36 TCGA-QQ-A5VB-01A-11R-A36F-07 Nchr19~50223254~RPS9 intergenic "-," "RPS9," chr19~chr19 50223254 54704726 3 ++ 0.636514 2 0 2 2 20 TCGA-QQ-A5VB-01A-11R-A36F-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 46 -+ 2.735751 45 28 16 45 226 TCGA-QQ-A5VB-01A-11R-A36F-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145013721 11 -+ 1.84622 9 1 8 9 30 TCGA-QQ-A5VB-01A-11R-A36F-07 Nchr1~35816913~RPL5 intergenic "-," "RPL5," chr1~chr1 35816913 93303163 3 -- 1.098612 2 2 0 2 18 TCGA-QQ-A5VB-01A-11R-A36F-07 Nchr21~9827382~Nchr21~9827481 intergenic "-," "-," chr21~chr21 9827382 9827481 2 -- 0.693147 2 2 0 2 6 TCGA-QQ-A5VB-01A-11R-A36F-07 Nchr3~82251605~Nchr3~82465271 intergenic "-," "-," chr3~chr3 82251605 82465271 6 ++ 1.56071 5 3 2 5 26 TCGA-QQ-A5VB-01A-11R-A36F-07 Nchr4~138228524~Nchr4~138018961 intergenic "-," "-," chr4~chr4 138228524 138018961 3 -- 0.636514 1 1 0 1 8 TCGA-QQ-A5VB-01A-11R-A36F-07 Nchr4~138228524~RP11-138I17.1 intergenic "-," "RP11-138I17.1," chr4~chr4 138228524 138010754 4 -- 1.386294 2 0 2 2 4 TCGA-QQ-A5VB-01A-11R-A36F-07 Nchr7~122851462~Nchr7~123096679 intergenic "-," "-," chr7~chr7 122851462 123096679 3 ++ 1.098612 3 0 3 3 2 TCGA-QQ-A5VB-01A-11R-A36F-07 Nchr7~122851497~Nchr7~123096679 intergenic "-," "-," chr7~chr7 122851497 123096679 17 ++ 2.002883 16 1 15 16 46 TCGA-QQ-A5VB-01A-11R-A36F-07 Nchr9~16654417~AC022596.6 intergenic "-," "AC022596.6," chr9~chr17 16654417 16722162 6 -- 1.791759 5 4 1 5 24 TCGA-QQ-A5VB-01A-11R-A36F-07 RP11-386G11.10~COL1A1 fusion "RP11-386G11.10,TUBA1B,RP11-386G11.10,TUBA1B,RP11-386G11.10," "COL1A1," chr12~chr17 49521834 48261714 2 +- 0.693147 2 2 0 2 4 TCGA-QQ-A5VB-01A-11R-A36F-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 5 ++ 0.950271 5 5 0 5 10 TCGA-QQ-A5VB-01A-11R-A36F-07 RPL37A~FN1 fusion "RPL37A,AC098820.3," "FN1," chr2~chr2 217363330 216244040 4 -- 1.039721 4 3 1 4 2 TCGA-QQ-A5VB-01A-11R-A36F-07 RRBP1~Nchr6~50372131 intergenic "RRBP1," "-," chr20~chr6 17602103 50372131 11 -- 2.145842 11 6 5 11 16 TCGA-X2-A95T-01A-11R-A37L-07 AC079150.3~FMNL2 fusion "AC079150.3," "FMNL2," chr2~chr2 154194294 153473605 4 ++ 1.386294 3 2 1 3 10 TCGA-X2-A95T-01A-11R-A37L-07 ADAMTS5~Nchr21~28543481 intergenic "ADAMTS5," "-," chr21~chr21 28338443 28543481 10 ++ 2.302585 9 6 3 9 4 TCGA-X2-A95T-01A-11R-A37L-07 ADORA2B~CTD-2651L24.1 fusion "ADORA2B," "CTD-2651L24.1," chr17~chr5 15848897 40267458 2 ++ 0.693147 2 2 0 2 2 TCGA-X2-A95T-01A-11R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272828 189869023 3 -+ 0.636514 3 1 2 3 2 TCGA-X2-A95T-01A-11R-A37L-07 GNG12~Nchr1~68537483 intergenic "GNG12," "-," chr1~chr1 68298119 68537483 2 ++ 0.693147 2 0 2 2 4 TCGA-X2-A95T-01A-11R-A37L-07 HN1~Nchr2~174296244 intergenic "HN1," "-," chr17~chr2 73143651 174296244 35 -- 1.314334 22 22 0 22 2 TCGA-X2-A95T-01A-11R-A37L-07 ISOC1~Nchr5~128679362 intergenic "ISOC1," "-," chr5~chr5 128442755 128679362 2 ++ 0.693147 2 1 1 2 14 TCGA-X2-A95T-01A-11R-A37L-07 Nchr13~40615542~Nchr13~40412600 intergenic "-," "-," chr13~chr13 40615542 40412600 2 -- 0.693147 2 1 1 2 4 TCGA-X2-A95T-01A-11R-A37L-07 Nchr13~49349406~C13orf18 intergenic "-," "C13orf18," chr13~chr13 49349406 46946732 9 -- 1.889159 8 7 1 8 2 TCGA-X2-A95T-01A-11R-A37L-07 Nchr15~21916043~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21916043 20876597 11 -- 2.019815 9 2 7 9 6 TCGA-X2-A95T-01A-11R-A37L-07 Nchr15~21941616~NBEA intergenic "-," "NBEA," chr15~chr13 21941616 35683427 3 -+ 1.098612 3 3 0 3 16 TCGA-X2-A95T-01A-11R-A37L-07 Nchr15~21941616~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21941616 20876597 33 -- 2.54792 27 16 11 27 20 TCGA-X2-A95T-01A-11R-A37L-07 Nchr16~63651597~Nchr16~63368571 intergenic "-," "-," chr16~chr16 63651597 63368571 2 -- 0.693147 2 0 2 2 2 TCGA-X2-A95T-01A-11R-A37L-07 Nchr16~79619777~Nchr16~79246798 intergenic "-," "-," chr16~chr16 79619777 79246798 2 -- 0.693147 1 1 0 1 10 TCGA-X2-A95T-01A-11R-A37L-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 4 ++ 1.386294 4 1 3 4 4 TCGA-X2-A95T-01A-11R-A37L-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 2 ++ 0.693147 2 1 1 2 12 TCGA-X2-A95T-01A-11R-A37L-07 Nchr18~37331293~Nchr18~37115579 intergenic "-," "-," chr18~chr18 37331293 37115579 3 -- 1.098612 2 1 1 2 8 TCGA-X2-A95T-01A-11R-A37L-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 11 -+ 2.098274 11 10 1 11 50 TCGA-X2-A95T-01A-11R-A37L-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145013721 4 -+ 1.039721 4 2 2 4 26 TCGA-X2-A95T-01A-11R-A37L-07 Nchr1~148000671~SEC22B intergenic "-," "SEC22B," chr1~chr1 148000671 145109524 3 -+ 1.098612 2 2 0 2 8 TCGA-X2-A95T-01A-11R-A37L-07 Nchr2~139258325~Nchr2~139057107 intergenic "-," "-," chr2~chr2 139258325 139057107 2 -- 0.693147 1 1 0 1 4 TCGA-X2-A95T-01A-11R-A37L-07 Nchr2~41646068~Nchr2~41393695 intergenic "-," "-," chr2~chr2 41646068 41393695 8 -- 1.667462 2 0 2 2 8 TCGA-X2-A95T-01A-11R-A37L-07 Nchr2~41987110~Nchr2~41764934 intergenic "-," "-," chr2~chr2 41987110 41764934 9 -- 2.043192 4 2 2 4 6 TCGA-X2-A95T-01A-11R-A37L-07 Nchr3~64785421~Nchr3~65004116 intergenic "-," "-," chr3~chr3 64785421 65004116 3 ++ 1.098612 3 1 2 3 2 TCGA-X2-A95T-01A-11R-A37L-07 Nchr7~140912504~Nchr7~141137408 intergenic "-," "-," chr7~chr7 140912504 141137408 4 ++ 1.039721 3 1 2 3 4 TCGA-X2-A95T-01A-11R-A37L-07 Nchr9~28947816~LINGO2 intergenic "-," "LINGO2," chr9~chr9 28947816 28670278 58 -- 3.125425 20 13 7 20 10 TCGA-X2-A95T-01A-11R-A37L-07 Nchr9~29212088~Nchr9~28947912 intergenic "-," "-," chr9~chr9 29212088 28947912 14 -- 2.441015 9 1 8 9 4 TCGA-X2-A95T-01A-11R-A37L-07 Nchr9~29212920~Nchr9~28947912 intergenic "-," "-," chr9~chr9 29212920 28947912 24 -- 2.24333 14 2 12 14 20 TCGA-X2-A95T-01A-11R-A37L-07 NchrX~73500229~NchrX~73289419 intergenic "-," "-," chrX~chrX 73500229 73289419 3 -- 1.098612 3 2 1 3 2 TCGA-X2-A95T-01A-11R-A37L-07 PSPC1~Nchr13~20839541 intergenic "PSPC1," "-," chr13~chr13 20315705 20839541 4 -- 1.386294 4 2 2 4 4 TCGA-X2-A95T-01A-11R-A37L-07 PSPC1~Nchr13~20841589 intergenic "PSPC1," "-," chr13~chr13 20315705 20841589 3 -- 1.098612 3 2 1 3 6 TCGA-X2-A95T-01A-11R-A37L-07 PTGER3~Nchr1~71256795 intergenic "PTGER3," "-," chr1~chr1 71477988 71256795 2 -- 0.693147 2 1 1 2 12 TCGA-X2-A95T-01A-11R-A37L-07 RB1~Nchr14~64808493 intergenic "RB1," "-," chr13~chr14 48955579 64808493 2 +- 0.693147 2 2 0 2 2 TCGA-X2-A95T-01A-11R-A37L-07 RB1~Nchr14~64813146 intergenic "RB1," "-," chr13~chr14 48955579 64813146 12 +- 2.094729 12 5 7 12 50 TCGA-X2-A95T-01A-11R-A37L-07 RP11-335L9.1~Nchr3~177483365 intergenic "RP11-335L9.1," "-," chr3~chr3 177159898 177483365 3 ++ 1.098612 2 2 0 2 8 TCGA-X2-A95T-01A-11R-A37L-07 RP11-335L9.1~Nchr3~177483365 intergenic "RP11-335L9.1," "-," chr3~chr3 177257281 177483365 4 ++ 1.386294 2 0 2 2 8 TCGA-X2-A95T-01A-11R-A37L-07 SH3YL1~MTHFD1L fusion "SH3YL1," "MTHFD1L," chr2~chr6 229966 151243341 6 -+ 1.791759 6 3 3 6 22 TCGA-WP-A9GB-01A-11R-A37L-07 AMFR~FTO fusion "AMFR," "FTO," chr16~chr16 56401356 53967897 4 -+ 1.386294 3 0 3 3 2 TCGA-WP-A9GB-01A-11R-A37L-07 AMFR~Nchr16~56219134 intergenic "AMFR," "-," chr16~chr16 56401356 56219134 2 -+ 0.693147 1 1 0 1 6 TCGA-WP-A9GB-01A-11R-A37L-07 BBS2~C15orf41 fusion "BBS2," "C15orf41," chr16~chr15 56553658 36946299 4 -+ 0.562335 4 2 2 4 8 TCGA-WP-A9GB-01A-11R-A37L-07 C15orf41~Nchr13~54697748 intergenic "C15orf41," "-," chr15~chr13 36937488 54697748 2 ++ 0.693147 2 1 1 2 4 TCGA-WP-A9GB-01A-11R-A37L-07 C15orf41~Nchr16~56026007 intergenic "C15orf41," "-," chr15~chr16 36937488 56026007 10 +- 2.025326 6 2 4 6 18 TCGA-WP-A9GB-01A-11R-A37L-07 CLPTM1~PVRL2 fusion "CLPTM1," "PVRL2," chr19~chr19 45458724 45368377 2 ++ 0.693147 2 2 0 2 14 TCGA-WP-A9GB-01A-11R-A37L-07 CLPTM1~PVRL2 fusion "CLPTM1," "PVRL2," chr19~chr19 45458724 45368528 9 ++ 2.197225 8 8 0 8 14 TCGA-WP-A9GB-01A-11R-A37L-07 DAAM1~MNAT1 fusion "DAAM1," "MNAT1," chr14~chr14 59798638 61346432 9 ++ 2.043192 6 3 3 6 16 TCGA-WP-A9GB-01A-11R-A37L-07 EBF1~Nchr5~157500934 intergenic "EBF1," "-," chr5~chr5 158500404 157500934 4 -- 1.386294 4 1 3 4 20 TCGA-WP-A9GB-01A-11R-A37L-07 FOXJ3~Nchr5~127302620 intergenic "FOXJ3," "-," chr1~chr5 42730786 127302620 4 -- 1.386294 4 3 1 4 10 TCGA-WP-A9GB-01A-11R-A37L-07 FOXJ3~Nchr5~127396936 intergenic "FOXJ3," "-," chr1~chr5 42730786 127396936 15 -- 2.211069 8 6 2 8 14 TCGA-WP-A9GB-01A-11R-A37L-07 GNAO1~FTO fusion "GNAO1," "FTO," chr16~chr16 56226528 53967897 19 ++ 2.552085 15 5 10 15 46 TCGA-WP-A9GB-01A-11R-A37L-07 GOLGA8A~GOLGA8B fusion "GOLGA8A," "GOLGA8B," chr15~chr15 34672112 34818465 2 -- 0.693147 2 0 2 2 4 TCGA-WP-A9GB-01A-11R-A37L-07 HN1~Nchr2~174296244 intergenic "HN1," "-," chr17~chr2 73143651 174296244 68 -- 1.028334 51 51 0 51 2 TCGA-WP-A9GB-01A-11R-A37L-07 INO80~C5orf32 fusion "INO80," "PFDN1,C5orf32," chr15~chr5 41337102 139661082 6 -+ 1.56071 6 0 6 6 26 TCGA-WP-A9GB-01A-11R-A37L-07 KIAA0564~Nchr13~43327495 intergenic "KIAA0564," "-," chr13~chr13 42245082 43327495 11 -+ 2.098274 11 5 6 11 34 TCGA-WP-A9GB-01A-11R-A37L-07 MEIS2~BBS2 fusion "MEIS2," "BBS2," chr15~chr16 37242525 56545196 11 -- 2.271869 9 2 7 9 12 TCGA-WP-A9GB-01A-11R-A37L-07 MYLK~USP48 fusion "MYLK," "USP48," chr3~chr1 123512524 22016592 3 -- 1.098612 3 2 1 3 6 TCGA-WP-A9GB-01A-11R-A37L-07 NPTN~Nchr1~22666553 intergenic "NPTN," "-," chr15~chr1 73866003 22666553 6 -+ 1.791759 5 3 2 5 8 TCGA-WP-A9GB-01A-11R-A37L-07 NPTN~Nchr1~22678238 intergenic "NPTN," "-," chr15~chr1 73866003 22678238 3 -+ 1.098612 3 3 0 3 4 TCGA-WP-A9GB-01A-11R-A37L-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 2 ++ 0.693147 2 1 1 2 2 TCGA-WP-A9GB-01A-11R-A37L-07 Nchr2~218823042~DIRC3 intergenic "-," "DIRC3," chr2~chr2 218823042 218149586 29 -- 2.966827 28 13 15 28 180 TCGA-WP-A9GB-01A-11R-A37L-07 Nchr5~113441478~Nchr5~113696642 intergenic "-," "-," chr5~chr5 113441478 113696642 3 ++ 1.098612 3 3 0 3 4 TCGA-WP-A9GB-01A-11R-A37L-07 Nchr6~8438264~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8438264 8784424 3 ++ 1.098612 3 1 2 3 8 TCGA-WP-A9GB-01A-11R-A37L-07 Nchr8~28096433~PDLIM7 intergenic "-," "PDLIM7," chr8~chr5 28096433 176916833 5 +- 1.332179 2 2 0 2 2 TCGA-WP-A9GB-01A-11R-A37L-07 Nchr9~28947816~LINGO2 intergenic "-," "LINGO2," chr9~chr9 28947816 28670278 11 -- 2.271869 4 3 1 4 2 TCGA-WP-A9GB-01A-11R-A37L-07 NchrX~64295792~NchrX~64586518 intergenic "-," "-," chrX~chrX 64295792 64586518 7 ++ 1.475076 7 3 4 7 10 TCGA-WP-A9GB-01A-11R-A37L-07 RP11-371M22.1~Nchr5~113696642 intergenic "RP11-371M22.1," "-," chr5~chr5 113392868 113696642 2 ++ 0.693147 2 2 0 2 4 TCGA-WP-A9GB-01A-11R-A37L-07 TNS1~DIRC3 fusion "AC010136.2,TNS1," "DIRC3," chr2~chr2 218843488 218149586 38 -- 2.839109 38 24 14 38 104 TCGA-WP-A9GB-01A-11R-A37L-07 TNS1~Nchr2~218133187 intergenic "AC010136.2,TNS1," "-," chr2~chr2 218843488 218133187 5 -- 1.609438 4 4 0 4 12 TCGA-WP-A9GB-01A-11R-A37L-07 TPT1~Nchr6~144522012 intergenic "TPT1," "-," chr13~chr6 45914301 144522012 24 -- 0.917965 23 23 0 23 22 TCGA-WP-A9GB-01A-11R-A37L-07 TTC1~MED4 fusion "TTC1," "MED4," chr5~chr13 159437865 48660588 2 +- 0.693147 2 1 1 2 12 TCGA-WP-A9GB-01A-11R-A37L-07 TTC1~MED4 fusion "TTC1," "MED4," chr5~chr13 159437865 48664554 3 +- 1.098612 3 3 0 3 18 TCGA-WP-A9GB-01A-11R-A37L-07 USP48~KALRN fusion "USP48," "KALRN," chr1~chr3 22027991 124281690 14 -+ 2.441015 14 4 10 14 14 TCGA-WP-A9GB-01A-11R-A37L-07 XPNPEP1~FAM13B fusion "XPNPEP1," "FAM13B," chr10~chr5 111674769 137298158 9 -- 1.889159 9 5 4 9 16 TCGA-WK-A8XO-01A-11R-A37L-07 B4GALNT1~EPYC fusion "B4GALNT1," "EPYC," chr12~chr12 58025698 91396355 6 -- 1.56071 6 3 3 6 2 TCGA-WK-A8XO-01A-11R-A37L-07 B4GALNT1~EPYC fusion "B4GALNT1," "EPYC," chr12~chr12 58026555 91396355 5 -- 1.332179 4 2 2 4 2 TCGA-WK-A8XO-01A-11R-A37L-07 B4GALNT1~Nchr12~91398813 intergenic "B4GALNT1," "-," chr12~chr12 58025698 91398813 3 -- 1.098612 2 1 1 2 2 TCGA-WK-A8XO-01A-11R-A37L-07 C12orf63~Nchr12~88776351 intergenic "C12orf63," "-," chr12~chr12 96894717 88776351 33 +- 2.818806 33 19 14 33 110 TCGA-WK-A8XO-01A-11R-A37L-07 C12orf63~Nchr12~88776351 intergenic "C12orf63," "-," chr12~chr12 96897807 88776351 4 +- 1.386294 4 1 3 4 110 TCGA-WK-A8XO-01A-11R-A37L-07 C12orf63~Nchr12~88778931 intergenic "C12orf63," "-," chr12~chr12 96894717 88778931 16 +- 2.220025 14 8 6 14 138 TCGA-WK-A8XO-01A-11R-A37L-07 C12orf63~Nchr4~64468383 intergenic "C12orf63," "-," chr12~chr4 96898024 64468383 6 +- 1.791759 6 4 2 6 20 TCGA-WK-A8XO-01A-11R-A37L-07 CEP290~FGGY fusion "CEP290," "FGGY," chr12~chr1 88482809 60091660 31 -+ 2.695684 30 25 5 30 86 TCGA-WK-A8XO-01A-11R-A37L-07 CNOT2~CEP290 fusion "CNOT2," "CEP290," chr12~chr12 70672054 88483264 11 +- 2.019815 11 6 5 11 28 TCGA-WK-A8XO-01A-11R-A37L-07 CPSF6~Nchr12~88776351 intergenic "CPSF6," "-," chr12~chr12 69656342 88776351 9 +- 2.043192 8 4 4 8 46 TCGA-WK-A8XO-01A-11R-A37L-07 DAB1~RP11-776H12.1 fusion "DAB1," "RP11-776H12.1," chr1~chr1 57889602 61008083 4 -- 1.386294 4 1 3 4 6 TCGA-WK-A8XO-01A-11R-A37L-07 DCN~Nchr2~240555252 intergenic "DCN," "-," chr12~chr2 91558382 240555252 12 -- 1.907284 11 9 2 11 42 TCGA-WK-A8XO-01A-11R-A37L-07 DTX3~Nchr12~95061014 intergenic "DTX3," "-," chr12~chr12 58002813 95061014 80 ++ 3.045253 79 36 42 79 262 TCGA-WK-A8XO-01A-11R-A37L-07 FAM172A~Nchr6~64078631 intergenic "FAM172A," "-," chr5~chr6 93386436 64078631 5 -+ 1.609438 5 1 4 5 12 TCGA-WK-A8XO-01A-11R-A37L-07 HCN3~Nchr12~58265871 intergenic "HCN3," "-," chr1~chr12 155247659 58265871 3 +- 0.636514 2 1 1 2 4 TCGA-WK-A8XO-01A-11R-A37L-07 HDAC4~Nchr2~240593990 intergenic "HDAC4," "-," chr2~chr2 240158289 240593990 2 -+ 0.693147 2 0 2 2 4 TCGA-WK-A8XO-01A-11R-A37L-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31236903 31322298 2 -- 0.693147 2 0 2 2 40 TCGA-WK-A8XO-01A-11R-A37L-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 268 -- 2.064786 268 267 1 268 24 TCGA-WK-A8XO-01A-11R-A37L-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 256 -- 2.522971 147 39 108 147 2 TCGA-WK-A8XO-01A-11R-A37L-07 IQGAP3~Nchr12~87704214 intergenic "IQGAP3," "-," chr1~chr12 156524027 87704214 6 -+ 1.56071 6 3 3 6 24 TCGA-WK-A8XO-01A-11R-A37L-07 MARCH9~Nchr12~106329219 intergenic "MARCH9," "-," chr12~chr12 58150867 106329219 3 +- 1.098612 3 0 3 3 24 TCGA-WK-A8XO-01A-11R-A37L-07 MARCH9~Nchr12~106329222 intergenic "MARCH9," "-," chr12~chr12 58150867 106329222 2 +- 0.693147 1 1 0 1 28 TCGA-WK-A8XO-01A-11R-A37L-07 MDM1~Nchr12~87651915 intergenic "MDM1," "-," chr12~chr12 68726008 87651915 75 -- 2.525909 75 2 73 75 92 TCGA-WK-A8XO-01A-11R-A37L-07 MDM2~Nchr12~71328430 intergenic "MDM2," "-," chr12~chr12 69207408 71328430 12 ++ 2.022809 10 6 4 10 6 TCGA-WK-A8XO-01A-11R-A37L-07 MDM2~Nchr12~76226697 intergenic "MDM2," "-," chr12~chr12 69207408 76226697 24 ++ 2.694154 23 11 12 23 72 TCGA-WK-A8XO-01A-11R-A37L-07 MDM2~Nchr12~87651915 intergenic "MDM2," "-," chr12~chr12 69222711 87651915 26 +- 2.544824 25 12 13 25 36 TCGA-WK-A8XO-01A-11R-A37L-07 MDM2~PTPRR fusion "MDM2," "PTPRR," chr12~chr12 69207408 71078563 6 +- 1.791759 5 3 2 5 8 TCGA-WK-A8XO-01A-11R-A37L-07 NTN4~CCT2 fusion "NTN4," "CCT2," chr12~chr12 96106990 69990936 4 -+ 1.039721 4 3 1 4 2 TCGA-WK-A8XO-01A-11R-A37L-07 NTN4~Nchr12~82348027 intergenic "NTN4," "-," chr12~chr12 96131644 82348027 6 -+ 1.791759 6 4 2 6 16 TCGA-WK-A8XO-01A-11R-A37L-07 NTN4~Nchr12~82348027 intergenic "NTN4," "-," chr12~chr12 96106990 82348027 53 -+ 3.069297 53 37 15 53 62 TCGA-WK-A8XO-01A-11R-A37L-07 Nchr11~27603266~RPS25 intergenic "-," "RPS25," chr11~chr11 27603266 118888759 2 -- 0.693147 1 1 0 1 184 TCGA-WK-A8XO-01A-11R-A37L-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 83 -+ 2.150236 32 0 32 32 44 TCGA-WK-A8XO-01A-11R-A37L-07 Nchr12~106329067~Nchr12~68571422 intergenic "-," "-," chr12~chr12 106329067 68571422 4 -+ 1.039721 4 2 2 4 4 TCGA-WK-A8XO-01A-11R-A37L-07 Nchr12~76230079~PTPRR intergenic "-," "PTPRR," chr12~chr12 76230079 71258967 6 ++ 1.329661 6 3 3 6 10 TCGA-WK-A8XO-01A-11R-A37L-07 Nchr12~82398867~CCT2 intergenic "-," "CCT2," chr12~chr12 82398867 69990936 60 ++ 2.873842 56 40 16 56 146 TCGA-WK-A8XO-01A-11R-A37L-07 Nchr12~82398867~Nchr12~88325665 intergenic "-," "-," chr12~chr12 82398867 88325665 11 +- 1.972247 8 6 2 8 36 TCGA-WK-A8XO-01A-11R-A37L-07 Nchr12~82402815~CCT2 intergenic "-," "CCT2," chr12~chr12 82402815 69990936 7 ++ 1.94591 7 4 3 7 152 TCGA-WK-A8XO-01A-11R-A37L-07 Nchr12~88325541~ACSS3 intergenic "-," "ACSS3," chr12~chr12 88325541 81350961 2 -+ 0.693147 2 2 0 2 34 TCGA-WK-A8XO-01A-11R-A37L-07 Nchr12~88325541~ACSS3 intergenic "-," "ACSS3," chr12~chr12 88325541 81350981 20 -+ 2.458204 16 8 8 16 32 TCGA-WK-A8XO-01A-11R-A37L-07 Nchr12~88693908~C12orf63 intergenic "-," "C12orf63," chr12~chr12 88693908 96890289 2 +- 0.693147 1 0 1 1 18 TCGA-WK-A8XO-01A-11R-A37L-07 Nchr12~88693908~C12orf63 intergenic "-," "C12orf63," chr12~chr12 88693908 96896172 2 +- 0.693147 2 1 1 2 38 TCGA-WK-A8XO-01A-11R-A37L-07 Nchr12~88695603~C12orf63 intergenic "-," "C12orf63," chr12~chr12 88695603 96890289 23 +- 2.668079 21 17 4 21 42 TCGA-WK-A8XO-01A-11R-A37L-07 Nchr12~88695603~C12orf63 intergenic "-," "C12orf63," chr12~chr12 88695603 96896172 17 +- 2.106171 18 7 10 18 98 TCGA-WK-A8XO-01A-11R-A37L-07 Nchr12~88732715~C12orf63 intergenic "-," "C12orf63," chr12~chr12 88732715 96896172 5 +- 1.332179 5 1 4 5 14 TCGA-WK-A8XO-01A-11R-A37L-07 Nchr12~88773259~Nchr12~88773333 intergenic "-," "-," chr12~chr12 88773259 88773333 6 -- 1.56071 6 6 0 6 2 TCGA-WK-A8XO-01A-11R-A37L-07 Nchr12~88776554~C12orf63 intergenic "-," "C12orf63," chr12~chr12 88776554 96896172 3 +- 1.098612 2 1 1 2 12 TCGA-WK-A8XO-01A-11R-A37L-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 49 -+ 2.717211 44 23 21 44 254 TCGA-WK-A8XO-01A-11R-A37L-07 Nchr1~57888689~RP11-776H12.1 intergenic "-," "RP11-776H12.1," chr1~chr1 57888689 61008083 5 -- 1.609438 4 0 4 4 4 TCGA-WK-A8XO-01A-11R-A37L-07 Nchr2~177065788~Nchr2~177065931 intergenic "-," "-," chr2~chr2 177065788 177065931 2 -- 0.693147 2 0 2 2 8 TCGA-WK-A8XO-01A-11R-A37L-07 Nchr2~239869427~Nchr2~227198297 intergenic "-," "-," chr2~chr2 239869427 227198297 5 -- 1.332179 2 0 2 2 10 TCGA-WK-A8XO-01A-11R-A37L-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 16 ++ 2.273966 16 16 0 16 2 TCGA-WK-A8XO-01A-11R-A37L-07 PPP1R12A~Nchr12~84846073 intergenic "PPP1R12A," "-," chr12~chr12 80239082 84846073 2 -- 0.693147 2 0 2 2 2 TCGA-WK-A8XO-01A-11R-A37L-07 PPP1R12A~Nchr12~84905760 intergenic "PPP1R12A," "-," chr12~chr12 80239082 84905760 2 -- 0.693147 2 0 2 2 6 TCGA-WK-A8XO-01A-11R-A37L-07 PTPRB~SYT1 fusion "PTPRB," "SYT1," chr12~chr12 70964806 79601586 7 -+ 1.94591 7 3 4 7 22 TCGA-WK-A8XO-01A-11R-A37L-07 PTPRB~SYT1 fusion "PTPRB," "SYT1," chr12~chr12 70964806 79602233 3 -+ 0.636514 3 0 3 3 6 TCGA-WK-A8XO-01A-11R-A37L-07 RAB3IP~NUCB2 fusion "RAB3IP," "NUCB2," chr12~chr11 70132811 17304336 5 ++ 1.609438 5 3 2 5 22 TCGA-WK-A8XO-01A-11R-A37L-07 RAB3IP~Nchr4~157255387 intergenic "RAB3IP," "-," chr12~chr4 70150443 157255387 10 ++ 2.163956 8 4 4 8 24 TCGA-WK-A8XO-01A-11R-A37L-07 RAB3IP~Nchr4~157255391 intergenic "RAB3IP," "-," chr12~chr4 70150443 157255391 2 ++ 0.693147 1 1 0 1 26 TCGA-WK-A8XO-01A-11R-A37L-07 RP11-458D21.1~LRRIQ1 fusion "RP11-458D21.1," "LRRIQ1," chr1~chr12 145382056 85521610 13 -+ 2.351673 13 6 7 13 20 TCGA-WK-A8XO-01A-11R-A37L-07 RP11-458D21.1~LRRIQ1 fusion "RP11-458D21.1," "LRRIQ1," chr1~chr12 145382056 85531628 2 -+ 0.693147 2 0 2 2 8 TCGA-WK-A8XO-01A-11R-A37L-07 RP11-571M6.15~Nchr12~69199091 intergenic "METTL21B,RP11-571M6.15," "-," chr12~chr12 58166911 69199091 6 +- 1.56071 6 0 6 6 8 TCGA-WK-A8XO-01A-11R-A37L-07 SENP6~AKIRIN2 fusion "SENP6," "AKIRIN2," chr6~chr6 76388643 88385325 38 +- 2.666065 37 15 22 37 100 TCGA-WK-A8XO-01A-11R-A37L-07 TBC1D15~Nchr12~68566070 intergenic "TBC1D15," "-," chr12~chr12 72291721 68566070 7 ++ 1.94591 5 3 2 5 20 TCGA-WK-A8XO-01A-11R-A37L-07 TBC1D15~Nchr12~68571744 intergenic "TBC1D15," "-," chr12~chr12 72291721 68571744 2 ++ 0.693147 2 1 1 2 4 TCGA-WK-A8XO-01A-11R-A37L-07 TBC1D15~Nchr12~68579050 intergenic "TBC1D15," "-," chr12~chr12 72291721 68579050 3 ++ 0.636514 3 0 3 3 8 TCGA-WK-A8XO-01A-11R-A37L-07 TBC1D15~Nchr12~68592359 intergenic "TBC1D15," "-," chr12~chr12 72291721 68592359 4 ++ 1.039721 4 2 2 4 14 TCGA-WK-A8XO-01A-11R-A37L-07 TMTC3~Nchr12~84507623 intergenic "TMTC3," "-," chr12~chr12 88570096 84507623 13 ++ 2.311423 13 9 4 13 66 TCGA-WK-A8XO-01A-11R-A37L-07 TMTC3~Nchr12~84511841 intergenic "TMTC3," "-," chr12~chr12 88570096 84511841 5 ++ 0.950271 5 4 1 5 36 TCGA-WK-A8XO-01A-11R-A37L-07 TMTC3~Nchr12~84512123 intergenic "TMTC3," "-," chr12~chr12 88570096 84512123 2 ++ 0.693147 2 0 2 2 10 TCGA-WK-A8XO-01A-11R-A37L-07 TMTC3~Nchr12~84517425 intergenic "TMTC3," "-," chr12~chr12 88570096 84517425 18 ++ 2.264049 18 11 7 18 74 TCGA-WK-A8XO-01A-11R-A37L-07 TMTC3~PRRC2C fusion "TMTC3," "PRRC2C," chr12~chr1 88570096 171560726 49 ++ 2.913475 49 27 22 49 178 TCGA-WK-A8XO-01A-11R-A37L-07 TPSAB1~Nchr16~1278539 intergenic "TPSAB1," "-," chr16~chr16 1292317 1278539 2 ++ 0.693147 2 1 1 2 20 TCGA-WK-A8XO-01A-11R-A37L-07 TPT1~Nchr6~144522012 intergenic "TPT1," "-," chr13~chr6 45914301 144522012 6 -- 0.867563 5 5 0 5 12 TCGA-WK-A8XO-01A-11R-A37L-07 TSFM~Nchr12~69440775 intergenic "TSFM," "-," chr12~chr12 58180945 69440775 3 ++ 1.098612 3 0 3 3 8 TCGA-WK-A8XO-01A-11R-A37L-07 TSFM~Nchr12~69440775 intergenic "TSFM," "-," chr12~chr12 58186856 69440775 4 ++ 1.386294 4 2 2 4 26 TCGA-WK-A8XO-01A-11R-A37L-07 ZNF418~MYO9B fusion "ZNF418," "MYO9B," chr19~chr19 58439345 17320395 9 -+ 2.043192 9 3 6 9 24 TCGA-WK-A8XZ-01A-11R-A37L-07 C11orf96~MYH11 fusion "C11orf96," "MYH11," chr11~chr16 43964688 15812219 2 +- 0.693147 2 0 2 2 2 TCGA-WK-A8XZ-01A-11R-A37L-07 DAZAP2~Nchr2~203066610 intergenic "DAZAP2," "-," chr12~chr2 51632608 203066610 2 -- 0.693147 2 2 0 2 2 TCGA-WK-A8XZ-01A-11R-A37L-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 82 -+ 2.3791 42 0 42 42 74 TCGA-WK-A8XZ-01A-11R-A37L-07 Nchr12~24366277~SOX5 intergenic "-," "SOX5," chr12~chr12 24366277 24048958 11 -- 1.84622 9 9 0 9 6 TCGA-WK-A8XZ-01A-11R-A37L-07 Nchr14~38075947~CTD-2058B24.1 intergenic "-," "CTD-2058B24.1," chr14~chr14 38075947 38437650 2 ++ 0.693147 2 1 1 2 4 TCGA-WK-A8XZ-01A-11R-A37L-07 Nchr15~21916043~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21916043 20876597 11 -- 2.145842 11 3 8 11 8 TCGA-WK-A8XZ-01A-11R-A37L-07 Nchr15~38133618~Nchr15~37712386 intergenic "-," "-," chr15~chr15 38133618 37712386 5 -- 1.609438 5 0 5 5 8 TCGA-WK-A8XZ-01A-11R-A37L-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 2 ++ 0.693147 2 0 2 2 6 TCGA-WK-A8XZ-01A-11R-A37L-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 3 ++ 0.636514 3 2 1 3 4 TCGA-WK-A8XZ-01A-11R-A37L-07 Nchr18~37331293~Nchr18~37115579 intergenic "-," "-," chr18~chr18 37331293 37115579 6 -- 1.791759 5 3 2 5 18 TCGA-WK-A8XZ-01A-11R-A37L-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 6 -+ 1.791759 5 2 3 5 100 TCGA-WK-A8XZ-01A-11R-A37L-07 Nchr3~187872040~LPP intergenic "-," "LPP," chr3~chr3 187872040 188123900 5 ++ 1.609438 5 0 5 5 2 TCGA-WK-A8XZ-01A-11R-A37L-07 Nchr7~140912504~Nchr7~141137408 intergenic "-," "-," chr7~chr7 140912504 141137408 9 ++ 2.197225 4 3 1 4 8 TCGA-WK-A8XZ-01A-11R-A37L-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40768381 8 ++ 1.732868 6 0 6 6 18 TCGA-WK-A8XZ-01A-11R-A37L-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 204 ++ 3.024618 44 7 37 44 18 TCGA-WK-A8XZ-01A-11R-A37L-07 Nchr8~97382666~Nchr8~97382796 intergenic "-," "-," chr8~chr8 97382666 97382796 2 -- 0.693147 2 1 1 2 2 TCGA-WK-A8XZ-01A-11R-A37L-07 NchrX~124318557~ODZ1 intergenic "-," "ODZ1," chrX~chrX 124318557 124097666 2 -- 0.693147 2 1 1 2 24 TCGA-WK-A8XZ-01A-11R-A37L-07 PCSK7~MYH11 fusion "TAGLN,PCSK7,TAGLN," "MYH11," chr11~chr16 117075283 15826558 2 -- 0.693147 2 1 1 2 2 TCGA-WK-A8XZ-01A-11R-A37L-07 PSPC1~Nchr4~190523334 intergenic "PSPC1," "-," chr13~chr4 20304379 190523334 9 -+ 2.197225 9 6 3 9 10 TCGA-WK-A8XZ-01A-11R-A37L-07 RP11-371M22.1~Nchr5~113696642 intergenic "RP11-371M22.1," "-," chr5~chr5 113392868 113696642 4 ++ 1.386294 4 2 2 4 10 TCGA-WK-A8XZ-01A-11R-A37L-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 2 +- 0.693147 2 0 2 2 2 TCGA-WK-A8XQ-01A-11R-A37L-07 CTD-2187J20.1~RP11-434D9.1 fusion "CTD-2187J20.1," "RP11-434D9.1," chr5~chr5 66564993 66915619 11 ++ 2.145842 9 5 4 9 12 TCGA-WK-A8XQ-01A-11R-A37L-07 CTD-2281E23.2~DLGAP2 fusion "CTD-2281E23.2," "DLGAP2," chr8~chr8 1208883 1449532 18 ++ 2.553237 8 1 7 8 2 TCGA-WK-A8XQ-01A-11R-A37L-07 DAB1~Nchr1~58436537 intergenic "DAB1," "-," chr1~chr1 58715912 58436537 6 -- 1.56071 4 1 3 4 2 TCGA-WK-A8XQ-01A-11R-A37L-07 GIGYF2~EEF1B2 fusion "GIGYF2," "EEF1B2," chr2~chr2 233594854 207024743 5 ++ 1.609438 2 2 0 2 10 TCGA-WK-A8XQ-01A-11R-A37L-07 Nchr10~107729821~Nchr10~107433446 intergenic "-," "-," chr10~chr10 107729821 107433446 8 -- 1.732868 5 3 2 5 26 TCGA-WK-A8XQ-01A-11R-A37L-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 34 -+ 2.509589 21 0 21 21 8 TCGA-WK-A8XQ-01A-11R-A37L-07 Nchr12~56905494~Nchr12~56905374 intergenic "-," "-," chr12~chr12 56905494 56905374 3 ++ 1.098612 3 3 0 3 2 TCGA-WK-A8XQ-01A-11R-A37L-07 Nchr14~90085372~FOXN3 intergenic "-," "FOXN3," chr14~chr14 90085372 89878834 7 -- 1.94591 6 6 0 6 28 TCGA-WK-A8XQ-01A-11R-A37L-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 56 ++ 2.841447 51 20 31 51 108 TCGA-WK-A8XQ-01A-11R-A37L-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 40 ++ 2.8462 37 19 18 37 74 TCGA-WK-A8XQ-01A-11R-A37L-07 Nchr17~5740569~WSCD1 intergenic "-," "WSCD1," chr17~chr17 5740569 5983691 17 ++ 2.18084 10 0 10 10 18 TCGA-WK-A8XQ-01A-11R-A37L-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151282 8 -- 2.079442 6 2 4 6 86 TCGA-WK-A8XQ-01A-11R-A37L-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 44 -- 2.8368 28 9 19 28 88 TCGA-WK-A8XQ-01A-11R-A37L-07 Nchr1~177599568~RP1-35C21.2 intergenic "-," "RP1-35C21.2," chr1~chr1 177599568 177362924 18 -- 2.341066 14 14 0 14 10 TCGA-WK-A8XQ-01A-11R-A37L-07 Nchr1~177713844~RP1-35C21.2 intergenic "-," "RP1-35C21.2," chr1~chr1 177713844 177362924 13 -- 1.884871 13 10 3 13 58 TCGA-WK-A8XQ-01A-11R-A37L-07 Nchr5~169916007~KCNIP1 intergenic "-," "KCNIP1," chr5~chr5 169916007 170145762 3 ++ 0.636514 3 1 2 3 2 TCGA-WK-A8XQ-01A-11R-A37L-07 Nchr7~140912504~Nchr7~141137408 intergenic "-," "-," chr7~chr7 140912504 141137408 6 ++ 1.791759 3 0 3 3 2 TCGA-WK-A8XQ-01A-11R-A37L-07 Nchr8~92498656~RP11-122C21.1 intergenic "-," "RP11-122C21.1," chr8~chr8 92498656 92784075 4 ++ 1.039721 3 1 2 3 2 TCGA-WK-A8XQ-01A-11R-A37L-07 Nchr9~18163979~ADAMTSL1 intergenic "-," "ADAMTSL1," chr9~chr9 18163979 18504827 3 ++ 0.636514 2 1 1 2 12 TCGA-WK-A8XQ-01A-11R-A37L-07 Nchr9~19200532~RPS6 intergenic "-," "RPS6," chr9~chr9 19200532 19378478 4 -- 0.562335 4 0 4 4 62 TCGA-WK-A8XQ-01A-11R-A37L-07 Nchr9~97315523~Nchr9~97094198 intergenic "-," "-," chr9~chr9 97315523 97094198 3 -- 1.098612 3 1 2 3 8 TCGA-WK-A8XQ-01A-11R-A37L-07 RP11-123O10.4~GRIP1 fusion "RP11-123O10.4," "GRIP1," chr12~chr12 67462830 66990707 22 -- 2.712962 12 5 7 12 48 TCGA-WK-A8XQ-01A-11R-A37L-07 RP11-1E3.1~Nchr5~97314184 intergenic "RP11-1E3.1," "-," chr5~chr5 97006388 97314184 3 ++ 1.098612 3 3 0 3 2 TCGA-WK-A8XQ-01A-11R-A37L-07 RP11-1E3.1~RP11-455B3.1 fusion "RP11-1E3.1," "RP11-455B3.1," chr5~chr5 97006388 97217134 3 ++ 1.098612 3 1 2 3 24 TCGA-WK-A8XQ-01A-11R-A37L-07 RP11-1E3.1~RP11-455B3.1 fusion "RP11-1E3.1," "RP11-455B3.1," chr5~chr5 97006388 97257835 2 ++ 0.693147 2 1 1 2 4 TCGA-WK-A8XQ-01A-11R-A37L-07 RP11-3J1.1~Nchr4~19049294 intergenic "RP11-3J1.1," "-," chr4~chr4 19335287 19049294 10 -- 1.886697 5 5 0 5 4 TCGA-WK-A8XQ-01A-11R-A37L-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 3 ++ 0.636514 3 2 1 3 2 TCGA-WK-A8XQ-01A-11R-A37L-07 SAMD5~SASH1 fusion "SAMD5," "SASH1," chr6~chr6 147830523 148711270 7 ++ 1.94591 7 0 7 7 10 TCGA-QQ-A8VH-01A-11R-A37L-07 AC011288.2~Nchr7~13757402 intergenic "AC011288.2," "-," chr7~chr7 13349948 13757402 6 ++ 1.56071 5 1 4 5 8 TCGA-QQ-A8VH-01A-11R-A37L-07 AC011288.2~Nchr7~13760783 intergenic "AC011288.2," "-," chr7~chr7 13349948 13760783 4 ++ 1.386294 3 1 2 3 14 TCGA-QQ-A8VH-01A-11R-A37L-07 AC011288.2~Nchr7~13771105 intergenic "AC011288.2," "-," chr7~chr7 13349948 13771105 2 ++ 0.693147 2 0 2 2 12 TCGA-QQ-A8VH-01A-11R-A37L-07 AC011497.1~Nchr19~43155239 intergenic "AC011497.1," "-," chr19~chr19 42929356 43155239 5 ++ 1.609438 5 3 2 5 6 TCGA-QQ-A8VH-01A-11R-A37L-07 ARHGEF9~NchrX~62479694 intergenic "ARHGEF9," "-," chrX~chrX 62917005 62479694 2 -- 0.693147 2 1 1 2 10 TCGA-QQ-A8VH-01A-11R-A37L-07 ATP1B1~DCAF6 fusion "ATP1B1," "DCAF6," chr1~chr1 169080736 167921038 7 ++ 1.747868 6 2 4 6 8 TCGA-QQ-A8VH-01A-11R-A37L-07 ENO1~EDARADD fusion "ENO1," "EDARADD," chr1~chr1 8924137 236647113 2 -+ 0.693147 1 1 0 1 10 TCGA-QQ-A8VH-01A-11R-A37L-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 80 -- 2.404258 73 21 52 73 26 TCGA-QQ-A8VH-01A-11R-A37L-07 HLA-L~Nchr6~29864828 intergenic "HLA-L," "-," chr6~chr6 30229256 29864828 66 ++ 2.464444 6 6 0 6 2 TCGA-QQ-A8VH-01A-11R-A37L-07 HNRPLL~Nchr2~56391570 intergenic "HNRPLL," "-," chr2~chr2 38795341 56391570 3 -- 1.098612 3 3 0 3 8 TCGA-QQ-A8VH-01A-11R-A37L-07 HNRPLL~Nchr2~56392896 intergenic "HNRPLL," "-," chr2~chr2 38795341 56392896 3 -- 1.098612 2 1 1 2 2 TCGA-QQ-A8VH-01A-11R-A37L-07 ITGB1~Nchr2~4275575 intergenic "ITGB1," "-," chr10~chr2 33247073 4275575 3 -- 1.098612 3 0 3 3 4 TCGA-QQ-A8VH-01A-11R-A37L-07 ITGB1~Nchr8~84065831 intergenic "ITGB1," "-," chr10~chr8 33247073 84065831 14 -- 2.106577 12 2 10 12 14 TCGA-QQ-A8VH-01A-11R-A37L-07 LRSAM1~Nchr14~105233127 intergenic "LRSAM1," "-," chr9~chr14 130252573 105233127 501 -+ 3.098116 257 254 1 257 258 TCGA-QQ-A8VH-01A-11R-A37L-07 MARCH5~RP11-202G18.1 fusion "MARCH5," "RP11-202G18.1," chr10~chr9 94071094 113901899 2 +- 0.693147 2 2 0 2 2 TCGA-QQ-A8VH-01A-11R-A37L-07 MEG3~Nchr14~105233127 intergenic "MEG3," "-," chr14~chr14 101297871 105233127 3 ++ 1.098612 3 1 2 3 52 TCGA-QQ-A8VH-01A-11R-A37L-07 METTL20~Nchr11~43305043 intergenic "METTL20," "-," chr12~chr11 31804670 43305043 4 -+ 1.386294 4 3 1 4 10 TCGA-QQ-A8VH-01A-11R-A37L-07 NCOR2~SCARB1 fusion "NCOR2," "SCARB1," chr12~chr12 124904503 125302253 63 -- 2.883613 61 20 41 61 54 TCGA-QQ-A8VH-01A-11R-A37L-07 NCOR2~SCARB1 fusion "NCOR2," "SCARB1," chr12~chr12 124904503 125351683 3 -- 1.098612 2 0 2 2 8 TCGA-QQ-A8VH-01A-11R-A37L-07 Nchr10~128491362~ADARB1 intergenic "-," "ADARB1," chr10~chr21 128491362 46624651 5 -- 1.332179 5 4 1 5 8 TCGA-QQ-A8VH-01A-11R-A37L-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 34 -+ 2.026943 16 0 16 16 14 TCGA-QQ-A8VH-01A-11R-A37L-07 Nchr12~104659073~Nchr12~104659181 intergenic "-," "-," chr12~chr12 104659073 104659181 2 -- 0.693147 2 1 1 2 6 TCGA-QQ-A8VH-01A-11R-A37L-07 Nchr12~87232443~MGAT4C intergenic "-," "MGAT4C," chr12~chr12 87232443 86829042 3 -- 1.098612 3 1 2 3 10 TCGA-QQ-A8VH-01A-11R-A37L-07 Nchr14~28125544~Nchr14~27791347 intergenic "-," "-," chr14~chr14 28125544 27791347 6 -- 1.56071 6 5 1 6 14 TCGA-QQ-A8VH-01A-11R-A37L-07 Nchr14~28125649~Nchr14~27791347 intergenic "-," "-," chr14~chr14 28125649 27791347 11 -- 2.271869 11 4 7 11 8 TCGA-QQ-A8VH-01A-11R-A37L-07 Nchr14~30766181~RP11-966I7.3 intergenic "-," "RP11-966I7.3," chr14~chr14 30766181 29294153 3 -- 0.636514 3 3 0 3 6 TCGA-QQ-A8VH-01A-11R-A37L-07 Nchr14~46681007~Nchr14~46970510 intergenic "-," "-," chr14~chr14 46681007 46970510 3 ++ 1.098612 3 2 1 3 4 TCGA-QQ-A8VH-01A-11R-A37L-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 6 ++ 1.56071 6 2 4 6 12 TCGA-QQ-A8VH-01A-11R-A37L-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 4 ++ 1.039721 4 3 1 4 8 TCGA-QQ-A8VH-01A-11R-A37L-07 Nchr18~37331293~Nchr18~37115579 intergenic "-," "-," chr18~chr18 37331293 37115579 4 -- 1.386294 3 2 1 3 10 TCGA-QQ-A8VH-01A-11R-A37L-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 4 -- 1.386294 4 1 3 4 12 TCGA-QQ-A8VH-01A-11R-A37L-07 Nchr19~31688063~Nchr19~33368137 intergenic "-," "-," chr19~chr19 31688063 33368137 3 ++ 1.098612 3 2 1 3 10 TCGA-QQ-A8VH-01A-11R-A37L-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 20 -+ 2.718473 16 9 7 16 112 TCGA-QQ-A8VH-01A-11R-A37L-07 Nchr2~122702023~Nchr2~123150539 intergenic "-," "-," chr2~chr2 122702023 123150539 3 ++ 1.098612 3 1 2 3 2 TCGA-QQ-A8VH-01A-11R-A37L-07 Nchr2~174398067~Nchr2~174675806 intergenic "-," "-," chr2~chr2 174398067 174675806 7 ++ 1.747868 6 3 3 6 24 TCGA-QQ-A8VH-01A-11R-A37L-07 Nchr2~177065788~Nchr2~177065931 intergenic "-," "-," chr2~chr2 177065788 177065931 2 -- 0.693147 2 0 2 2 8 TCGA-QQ-A8VH-01A-11R-A37L-07 Nchr2~4275414~Nchr8~84065831 intergenic "-," "-," chr2~chr8 4275414 84065831 5 -- 1.609438 4 2 2 4 10 TCGA-QQ-A8VH-01A-11R-A37L-07 Nchr3~59522723~FHIT intergenic "-," "FHIT," chr3~chr3 59522723 59795458 13 ++ 1.991509 7 0 7 7 10 TCGA-QQ-A8VH-01A-11R-A37L-07 Nchr6~153603745~Nchr6~153603655 intergenic "-," "-," chr6~chr6 153603745 153603655 2 ++ 0.693147 2 2 0 2 2 TCGA-QQ-A8VH-01A-11R-A37L-07 Nchr6~82767656~RP11-379B8.1 intergenic "-," "RP11-379B8.1," chr6~chr6 82767656 82555626 5 -- 1.332179 5 3 2 5 2 TCGA-QQ-A8VH-01A-11R-A37L-07 NchrX~26577521~NchrX~26906057 intergenic "-," "-," chrX~chrX 26577521 26906057 3 ++ 1.098612 3 1 2 3 2 TCGA-QQ-A8VH-01A-11R-A37L-07 NchrX~26577521~NchrX~26935101 intergenic "-," "-," chrX~chrX 26577521 26935101 3 ++ 1.098612 3 2 1 3 4 TCGA-QQ-A8VH-01A-11R-A37L-07 PDZRN4~Nchr12~41798021 intergenic "PDZRN4," "-," chr12~chr12 41587990 41798021 2 ++ 0.693147 2 0 2 2 2 TCGA-QQ-A8VH-01A-11R-A37L-07 PXDN~Nchr15~96937536 intergenic "PXDN," "-," chr2~chr15 1748028 96937536 34 -+ 2.891939 33 26 7 33 76 TCGA-QQ-A8VH-01A-11R-A37L-07 PXDN~Nchr15~96937536 intergenic "PXDN," "-," chr2~chr15 1738111 96937536 4 -+ 1.609438 5 2 2 5 76 TCGA-QQ-A8VH-01A-11R-A37L-07 PXDN~Nchr15~96946740 intergenic "PXDN," "-," chr2~chr15 1748028 96946740 25 -+ 2.601568 25 18 7 25 36 TCGA-QQ-A8VH-01A-11R-A37L-07 RP11-284G10.1~Nchr9~118016672 intergenic "RP11-284G10.1," "-," chr9~chr9 118503741 118016672 12 -- 2.369382 10 4 6 10 32 TCGA-QQ-A8VH-01A-11R-A37L-07 RP11-47P18.2~RP11-6B4.1 fusion "RP11-47P18.2," "RP11-6B4.1," chr3~chr3 80820106 81144263 3 ++ 1.098612 3 1 2 3 16 TCGA-QQ-A8VH-01A-11R-A37L-07 TSHZ2~Nchr20~51829855 intergenic "TSHZ2," "-," chr20~chr20 51589872 51829855 2 ++ 0.693147 2 0 2 2 6 TCGA-QQ-A8VG-01A-11R-A37L-07 ANXA2~Nchr9~33624934 intergenic "ANXA2," "-," chr15~chr9 60641386 33624934 5 -+ 0.950271 4 0 4 4 16 TCGA-QQ-A8VG-01A-11R-A37L-07 COL8A1~C3orf26 fusion "COL8A1," "C3orf26," chr3~chr3 99513226 99865817 7 ++ 1.94591 7 3 4 7 16 TCGA-QQ-A8VG-01A-11R-A37L-07 COL8A1~C3orf26 fusion "COL8A1," "C3orf26," chr3~chr3 99509854 99865817 3 ++ 1.098612 3 2 1 3 2 TCGA-QQ-A8VG-01A-11R-A37L-07 HLA-B~Nchr6~29902006 intergenic "HLA-B," "-," chr6~chr6 31323352 29902006 4 ++ 1.386294 3 1 2 3 140 TCGA-QQ-A8VG-01A-11R-A37L-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31236775 31322041 2 -- 0.693147 1 1 0 1 260 TCGA-QQ-A8VG-01A-11R-A37L-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31236793 31322063 1 -- 0.693147 1 0 0 1 66 TCGA-QQ-A8VG-01A-11R-A37L-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31236777 31322072 2 -- 0.693147 1 0 1 1 282 TCGA-QQ-A8VG-01A-11R-A37L-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31237115 31322073 2 -- 0.693147 2 1 1 2 172 TCGA-QQ-A8VG-01A-11R-A37L-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 407 -- 2.506378 405 404 1 405 90 TCGA-QQ-A8VG-01A-11R-A37L-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32486403 32548633 4 -- 0.693147 3 2 1 3 758 TCGA-QQ-A8VG-01A-11R-A37L-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32487410 32549594 2 -- 0.693147 2 2 0 2 18 TCGA-QQ-A8VG-01A-11R-A37L-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489713 32552066 2 -- 0.693147 2 0 2 2 94 TCGA-QQ-A8VG-01A-11R-A37L-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489801 32552130 2 -- 0.693147 2 0 2 2 44 TCGA-QQ-A8VG-01A-11R-A37L-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489804 32552130 6 -- 1.56071 5 0 5 5 44 TCGA-QQ-A8VG-01A-11R-A37L-07 HLA-L~Nchr6~29864828 intergenic "HLA-L," "-," chr6~chr6 30229256 29864828 1494 ++ 2.333911 142 142 0 142 6 TCGA-QQ-A8VG-01A-11R-A37L-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 46 -+ 2.194888 26 0 26 26 10 TCGA-QQ-A8VG-01A-11R-A37L-07 Nchr12~95211866~TMCC3 intergenic "-," "TMCC3," chr12~chr12 95211866 94976314 5 -- 1.609438 5 5 0 5 4 TCGA-QQ-A8VG-01A-11R-A37L-07 Nchr14~45066112~Nchr14~44862941 intergenic "-," "-," chr14~chr14 45066112 44862941 10 -- 2.163956 4 3 1 4 10 TCGA-QQ-A8VG-01A-11R-A37L-07 Nchr14~45267133~Nchr14~45066216 intergenic "-," "-," chr14~chr14 45267133 45066216 5 -- 1.332179 1 0 1 1 8 TCGA-QQ-A8VG-01A-11R-A37L-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 18 -+ 2.50529 16 9 7 16 160 TCGA-QQ-A8VG-01A-11R-A37L-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145013721 4 -+ 1.039721 4 1 3 4 32 TCGA-QQ-A8VG-01A-11R-A37L-07 Nchr20~58755971~Nchr20~59102445 intergenic "-," "-," chr20~chr20 58755971 59102445 2 ++ 0.693147 2 2 0 2 2 TCGA-QQ-A8VG-01A-11R-A37L-07 Nchr2~122702023~Nchr2~122978395 intergenic "-," "-," chr2~chr2 122702023 122978395 3 ++ 1.098612 3 3 0 3 6 TCGA-QQ-A8VG-01A-11R-A37L-07 Nchr6~165597032~Nchr6~165314310 intergenic "-," "-," chr6~chr6 165597032 165314310 2 -- 0.693147 1 0 1 1 4 TCGA-QQ-A8VG-01A-11R-A37L-07 Nchr6~29856480~HLA-B intergenic "-," "HLA-B," chr6~chr6 29856480 31324034 6 -- 1.242453 3 3 0 3 148 TCGA-QQ-A8VG-01A-11R-A37L-07 Nchr6~8438264~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8438264 8784424 2 ++ 0.693147 2 2 0 2 6 TCGA-QQ-A8VG-01A-11R-A37L-07 Nchr9~18163979~ADAMTSL1 intergenic "-," "ADAMTSL1," chr9~chr9 18163979 18504827 2 ++ 0.693147 2 1 1 2 6 TCGA-QQ-A8VG-01A-11R-A37L-07 NchrX~124318557~ODZ1 intergenic "-," "ODZ1," chrX~chrX 124318557 124097666 2 -- 0.693147 2 2 0 2 2 TCGA-QQ-A8VG-01A-11R-A37L-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 4 +- 1.039721 4 0 4 4 2 TCGA-QQ-A8VG-01A-11R-A37L-07 SAMD5~SASH1 fusion "SAMD5," "SASH1," chr6~chr6 147830523 148711270 3 ++ 1.098612 2 0 2 2 2 TCGA-DX-A8BX-01A-11R-A37L-07 ANXA2~Nchr15~60451417 intergenic "ANXA2," "-," chr15~chr15 60656628 60451417 7 -- 1.747868 2 1 1 2 18 TCGA-DX-A8BX-01A-11R-A37L-07 ANXA2~Nchr15~60454353 intergenic "ANXA2," "-," chr15~chr15 60656628 60454353 15 -- 2.338372 10 4 6 10 4 TCGA-DX-A8BX-01A-11R-A37L-07 CAB39~RHBDD1 fusion "CAB39," "RHBDD1," chr2~chr2 231624830 227860147 19 ++ 2.479122 18 16 2 18 88 TCGA-DX-A8BX-01A-11R-A37L-07 CCDC92~RP11-434I12.2 fusion "CCDC92," "RP11-434I12.2," chr12~chr8 124457076 74227840 4 -- 1.039721 4 0 4 4 30 TCGA-DX-A8BX-01A-11R-A37L-07 ECE1~Nchr2~228273100 intergenic "ECE1," "-," chr1~chr2 21599192 228273100 2 -- 0.693147 2 1 1 2 6 TCGA-DX-A8BX-01A-11R-A37L-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 2 +- 0.693147 2 2 0 2 2 TCGA-DX-A8BX-01A-11R-A37L-07 FBN1~Nchr5~1308781 intergenic "FBN1," "-," chr15~chr5 48764748 1308781 4 -+ 1.386294 4 1 3 4 18 TCGA-DX-A8BX-01A-11R-A37L-07 FBN1~Nchr5~1310314 intergenic "FBN1," "-," chr15~chr5 48764748 1310314 2 -+ 0.693147 2 1 1 2 1200 TCGA-DX-A8BX-01A-11R-A37L-07 FBN1~Nchr5~1310380 intergenic "FBN1," "-," chr15~chr5 48764748 1310380 7 -+ 1.94591 7 3 4 7 2004 TCGA-DX-A8BX-01A-11R-A37L-07 FBN1~Nchr5~1316679 intergenic "FBN1," "-," chr15~chr5 48764748 1316679 4 -+ 1.386294 4 2 2 4 2 TCGA-DX-A8BX-01A-11R-A37L-07 FBXO21~Nchr8~146297438 intergenic "FBXO21," "-," chr12~chr8 117593596 146297438 8 -- 1.906155 7 3 4 7 26 TCGA-DX-A8BX-01A-11R-A37L-07 HAUS2~TMPRSS12 fusion "HAUS2," "TMPRSS12," chr15~chr12 42841163 51279029 13 ++ 2.245035 12 6 6 12 32 TCGA-DX-A8BX-01A-11R-A37L-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 335 -- 2.557029 334 334 0 334 110 TCGA-DX-A8BX-01A-11R-A37L-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 44 -- 2.257535 44 1 43 44 34 TCGA-DX-A8BX-01A-11R-A37L-07 LSAMP~Nchr3~116018482 intergenic "LSAMP," "-," chr3~chr3 115726132 116018482 5 ++ 1.609438 5 3 2 5 4 TCGA-DX-A8BX-01A-11R-A37L-07 LSAMP~Nchr3~116073057 intergenic "LSAMP," "-," chr3~chr3 115726132 116073057 3 ++ 1.098612 2 0 2 2 2 TCGA-DX-A8BX-01A-11R-A37L-07 Nchr10~91738461~SNRPD2 intergenic "-," "SNRPD2," chr10~chr19 91738461 46195211 2 -- 0.693147 2 0 2 2 10 TCGA-DX-A8BX-01A-11R-A37L-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 51 -+ 2.338941 22 0 22 22 56 TCGA-DX-A8BX-01A-11R-A37L-07 Nchr12~127650893~Nchr12~127650978 intergenic "-," "-," chr12~chr12 127650893 127650978 2 -- 0.693147 2 0 2 2 4 TCGA-DX-A8BX-01A-11R-A37L-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 2 ++ 0.693147 2 0 2 2 38 TCGA-DX-A8BX-01A-11R-A37L-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 26 -+ 2.811419 25 17 8 25 126 TCGA-DX-A8BX-01A-11R-A37L-07 Nchr2~133037543~SLCO5A1 intergenic "-," "SLCO5A1," chr2~chr8 133037543 70602613 642 -- 1.854538 307 0 307 307 2 TCGA-DX-A8BX-01A-11R-A37L-07 Nchr2~177065789~Nchr2~177065920 intergenic "-," "-," chr2~chr2 177065789 177065920 2 -- 0.693147 2 0 2 2 8 TCGA-DX-A8BX-01A-11R-A37L-07 Nchr2~81709228~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81709228 82075877 5 ++ 0.950271 4 2 2 4 22 TCGA-DX-A8BX-01A-11R-A37L-07 Nchr2~81775871~Nchr2~82049394 intergenic "-," "-," chr2~chr2 81775871 82049394 4 ++ 1.386294 2 1 1 2 84 TCGA-DX-A8BX-01A-11R-A37L-07 Nchr2~81775871~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81775871 82075877 40 ++ 2.884718 30 15 15 30 76 TCGA-DX-A8BX-01A-11R-A37L-07 Nchr3~115510005~LSAMP intergenic "-," "LSAMP," chr3~chr3 115510005 115725983 3 ++ 1.098612 1 1 0 1 22 TCGA-DX-A8BX-01A-11R-A37L-07 Nchr3~115510005~Nchr3~116018482 intergenic "-," "-," chr3~chr3 115510005 116018482 3 ++ 0.636514 3 0 3 3 14 TCGA-DX-A8BX-01A-11R-A37L-07 Nchr6~29895882~HLA-B intergenic "-," "HLA-B," chr6~chr6 29895882 31324046 2 -- 0.693147 2 2 0 2 14 TCGA-DX-A8BX-01A-11R-A37L-07 Nchr7~122851497~Nchr7~123096679 intergenic "-," "-," chr7~chr7 122851497 123096679 7 ++ 1.747868 5 0 5 5 30 TCGA-DX-A8BX-01A-11R-A37L-07 PNPLA8~NRCAM fusion "PNPLA8," "NRCAM," chr7~chr7 108166473 107790592 4 -- 1.386294 4 3 1 4 12 TCGA-DX-A8BX-01A-11R-A37L-07 QKI~Nchr8~115333186 intergenic "QKI," "-," chr6~chr8 163876453 115333186 197 ++ 3.201723 187 131 56 187 348 TCGA-DX-A8BX-01A-11R-A37L-07 QKI~Nchr8~115333189 intergenic "QKI," "-," chr6~chr8 163876453 115333189 3 ++ 1.098612 3 2 1 3 344 TCGA-DX-A8BX-01A-11R-A37L-07 RP11-962G15.1~Nchr8~36284582 intergenic "RP11-962G15.1," "-," chr8~chr8 36559339 36284582 3 -- 0.636514 2 2 0 2 4 TCGA-DX-A8BX-01A-11R-A37L-07 RPL11~ARMC9 fusion "RPL11," "ARMC9," chr1~chr2 24021281 232225466 4 ++ 1.386294 4 1 3 4 12 TCGA-DX-A8BX-01A-11R-A37L-07 SMURF1~Nchr12~115532910 intergenic "SMURF1," "-," chr7~chr12 98741349 115532910 8 -+ 1.906155 8 6 2 8 30 TCGA-DX-A8BX-01A-11R-A37L-07 TPST1~GS1-124K5.4 fusion "TPST1," "GS1-124K5.4," chr7~chr7 65751696 65960242 6 ++ 1.56071 6 4 2 6 8 TCGA-DX-A8BX-01A-11R-A37L-07 TRIP12~ITM2C fusion "TRIP12," "ITM2C," chr2~chr2 230723488 231738132 40 -+ 2.750035 41 21 19 41 76 TCGA-DX-A8BX-01A-11R-A37L-07 TRIP12~ITM2C fusion "TRIP12," "ITM2C," chr2~chr2 230723488 231740335 2 -+ 0.693147 2 0 2 2 12 TCGA-DX-A8BX-01A-11R-A37L-07 VPS13B~SPAG1 fusion "VPS13B," "SPAG1," chr8~chr8 100287482 101203618 3 ++ 0.636514 3 1 2 3 12 TCGA-DX-A8BX-01A-11R-A37L-07 ZFPM2~SLC27A2 fusion "ZFPM2," "SLC27A2," chr8~chr15 106331209 50489697 16 ++ 2.100679 16 12 4 16 24 TCGA-DX-A8BX-01A-11R-A37L-07 ZNF84~RP11-706J10.1 fusion "ZNF84," "RP11-706J10.1," chr12~chr8 133618068 77388181 95 ++ 2.952014 89 45 44 89 188 TCGA-DX-A8BZ-01A-11R-A37L-07 CPSF4~RP11-762I7.5 fusion "CPSF4," "RP11-762I7.5,SARNP," chr7~chr12 99040711 56184376 3 +- 1.098612 3 1 2 3 12 TCGA-DX-A8BZ-01A-11R-A37L-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32486403 32548633 4 -- 0.562335 3 0 3 3 178 TCGA-DX-A8BZ-01A-11R-A37L-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 171 -- 2.612555 80 28 52 80 2 TCGA-DX-A8BZ-01A-11R-A37L-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 145 -+ 2.424633 46 0 46 46 56 TCGA-DX-A8BZ-01A-11R-A37L-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 20 -+ 2.579844 18 11 7 18 104 TCGA-DX-A8BZ-01A-11R-A37L-07 Nchr2~177065788~Nchr2~177065931 intergenic "-," "-," chr2~chr2 177065788 177065931 2 -- 0.693147 2 0 2 2 40 TCGA-DX-A8BZ-01A-11R-A37L-07 Nchr2~177065894~Nchr2~177066044 intergenic "-," "-," chr2~chr2 177065894 177066044 3 -- 1.098612 2 0 2 2 4 TCGA-DX-A8BZ-01A-11R-A37L-07 Nchr2~177065915~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065915 177065788 6 ++ 1.329661 6 0 6 6 4 TCGA-DX-A8BZ-01A-11R-A37L-07 Nchr3~186617985~RPS20 intergenic "-," "RPS20," chr3~chr8 186617985 56986946 2 -+ 0.693147 2 1 1 2 56 TCGA-DX-A8BZ-01A-11R-A37L-07 TRAPPC8~Nchr18~30113553 intergenic "TRAPPC8," "-," chr18~chr18 29511292 30113553 12 -- 2.138333 12 5 7 12 48 TCGA-DX-A8BV-01A-11R-A37L-07 ADIPOR1~Nchr1~235191278 intergenic "ADIPOR1," "-," chr1~chr1 202917432 235191278 2 -- 0.693147 2 2 0 2 14 TCGA-DX-A8BV-01A-11R-A37L-07 APP~Nchr21~20649735 intergenic "APP," "-," chr21~chr21 27462259 20649735 5 -- 1.609438 4 1 3 4 28 TCGA-DX-A8BV-01A-11R-A37L-07 APP~Nchr21~20716882 intergenic "APP," "-," chr21~chr21 27462259 20716882 10 -- 2.163956 5 5 0 5 14 TCGA-DX-A8BV-01A-11R-A37L-07 ARID4B~KLHL12 fusion "ARID4B," "KLHL12," chr1~chr1 235490229 202894335 4 -- 1.386294 4 2 2 4 18 TCGA-DX-A8BV-01A-11R-A37L-07 AZIN1~Nchr15~94599307 intergenic "AZIN1," "-," chr8~chr15 103845284 94599307 35 -+ 2.701402 34 22 12 34 84 TCGA-DX-A8BV-01A-11R-A37L-07 C9orf3~Nchr9~92739561 intergenic "C9orf3," "-," chr9~chr9 97767898 92739561 110 +- 2.857348 110 97 10 110 244 TCGA-DX-A8BV-01A-11R-A37L-07 DCLK1~CLDN10 fusion "DCLK1," "CLDN10," chr13~chr13 36686006 96212386 11 -+ 2.145842 11 8 3 11 38 TCGA-DX-A8BV-01A-11R-A37L-07 KDM5B~PPP1R12B fusion "KDM5B," "PPP1R12B," chr1~chr1 202742246 202536906 7 -+ 1.747868 7 1 6 7 28 TCGA-DX-A8BV-01A-11R-A37L-07 MRRF~NR4A1 fusion "MRRF,MRRF," "NR4A1," chr9~chr12 125027217 52448111 2 ++ 0.693147 2 2 0 2 4 TCGA-DX-A8BV-01A-11R-A37L-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 43 -+ 2.162608 23 0 22 23 12 TCGA-DX-A8BV-01A-11R-A37L-07 Nchr14~101435061~Nchr14~101270951 intergenic "-," "-," chr14~chr14 101435061 101270951 2 ++ 0.693147 2 0 2 2 22 TCGA-DX-A8BV-01A-11R-A37L-07 Nchr14~101435882~Nchr14~101270951 intergenic "-," "-," chr14~chr14 101435882 101270951 17 ++ 2.18084 16 7 9 16 50 TCGA-DX-A8BV-01A-11R-A37L-07 Nchr14~101435882~Nchr14~101289890 intergenic "-," "-," chr14~chr14 101435882 101289890 2 ++ 0.693147 2 1 1 2 6 TCGA-DX-A8BV-01A-11R-A37L-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 22 -+ 2.110573 19 14 5 19 136 TCGA-DX-A8BV-01A-11R-A37L-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145013721 5 -+ 1.05492 4 1 3 4 30 TCGA-DX-A8BV-01A-11R-A37L-07 Nchr6~29856480~HLA-B intergenic "-," "HLA-B," chr6~chr6 29856480 31324034 3 -- 0.636514 2 2 0 2 4 TCGA-DX-A8BV-01A-11R-A37L-07 Nchr8~25391725~RP11-299D14.2 intergenic "-," "RP11-299D14.2," chr8~chr8 25391725 25693894 3 ++ 0.636514 2 0 2 2 6 TCGA-DX-A8BV-01A-11R-A37L-07 PDZRN4~Nchr12~41798021 intergenic "PDZRN4," "-," chr12~chr12 41587990 41798021 4 ++ 1.386294 4 0 4 4 6 TCGA-DX-A8BV-01A-11R-A37L-07 PLEKHM2~ECE1 fusion "PLEKHM2," "ECE1," chr1~chr1 16045120 21573856 14 +- 1.908535 14 6 8 14 42 TCGA-DX-A8BV-01A-11R-A37L-07 RGL1~RCSD1 fusion "RGL1," "RCSD1," chr1~chr1 183861295 167653137 5 ++ 1.332179 5 1 4 5 4 TCGA-DX-A8BV-01A-11R-A37L-07 SFXN4~RP11-540N6.1 fusion "SFXN4," "RP11-540N6.1," chr10~chr10 120925049 132278500 2 -- 0.693147 2 0 2 2 18 TCGA-DX-A8BV-01A-11R-A37L-07 TTC28~YPEL1 fusion "TTC28," "YPEL1," chr22~chr22 29025540 22055507 3 -- 1.098612 3 1 2 3 10 TCGA-DX-A8BV-01A-11R-A37L-07 ZBTB34~Nchr9~102121741 intergenic "ZBTB34," "-," chr9~chr9 129623018 102121741 11 ++ 1.972247 10 10 0 10 2 TCGA-3R-A8YX-01A-11R-A37L-07 ACACA~Nchr9~1840168 intergenic "ACACA," "-," chr17~chr9 35538142 1840168 5 -+ 1.332179 4 3 1 4 14 TCGA-3R-A8YX-01A-11R-A37L-07 ACACA~Nchr9~1916957 intergenic "ACACA," "-," chr17~chr9 35538142 1916957 2 -+ 0.693147 2 1 1 2 6 TCGA-3R-A8YX-01A-11R-A37L-07 ACACA~Nchr9~1928393 intergenic "ACACA," "-," chr17~chr9 35538142 1928393 2 -+ 0.693147 2 1 1 2 12 TCGA-3R-A8YX-01A-11R-A37L-07 ACACA~Nchr9~1929409 intergenic "ACACA," "-," chr17~chr9 35538142 1929409 3 -+ 1.098612 3 1 2 3 6 TCGA-3R-A8YX-01A-11R-A37L-07 ACACA~Nchr9~1939980 intergenic "ACACA," "-," chr17~chr9 35538142 1939980 4 -+ 1.039721 4 3 1 4 4 TCGA-3R-A8YX-01A-11R-A37L-07 ACACA~Nchr9~1950229 intergenic "ACACA," "-," chr17~chr9 35538142 1950229 2 -+ 0.693147 2 1 1 2 2 TCGA-3R-A8YX-01A-11R-A37L-07 ACSS3~AVIL fusion "ACSS3," "AVIL," chr12~chr12 81472210 58204910 9 +- 1.889159 9 7 2 9 18 TCGA-3R-A8YX-01A-11R-A37L-07 AGAP2~Nchr4~190524473 intergenic "AGAP2," "-," chr12~chr4 58135695 190524473 12 -- 2.253858 10 8 2 10 10 TCGA-3R-A8YX-01A-11R-A37L-07 AKT3~Nchr1~233920504 intergenic "AKT3," "-," chr1~chr1 244006427 233920504 13 -- 2.458311 9 8 1 9 60 TCGA-3R-A8YX-01A-11R-A37L-07 ARFGEF1~LGR5 fusion "ARFGEF1," "LGR5," chr8~chr12 68163534 71898394 8 -+ 1.732868 4 0 4 4 8 TCGA-3R-A8YX-01A-11R-A37L-07 ARFGEF1~Nchr12~71870176 intergenic "ARFGEF1," "-," chr8~chr12 68163534 71870176 5 -+ 1.609438 5 2 3 5 6 TCGA-3R-A8YX-01A-11R-A37L-07 BAIAP2~Nchr12~82191604 intergenic "BAIAP2," "-," chr17~chr12 79010761 82191604 2 ++ 0.693147 1 0 1 1 88 TCGA-3R-A8YX-01A-11R-A37L-07 BAIAP2~Nchr12~82191604 intergenic "BAIAP2," "-," chr17~chr12 79009108 82191604 27 ++ 2.619004 27 17 10 27 98 TCGA-3R-A8YX-01A-11R-A37L-07 BAIAP2~Nchr12~82192127 intergenic "BAIAP2," "-," chr17~chr12 79009108 82192127 4 ++ 1.039721 4 3 1 4 38 TCGA-3R-A8YX-01A-11R-A37L-07 BAIAP2~Nchr12~82202908 intergenic "BAIAP2," "-," chr17~chr12 79010761 82202908 3 ++ 1.098612 3 2 1 3 16 TCGA-3R-A8YX-01A-11R-A37L-07 BRIP1~Nchr9~5628790 intergenic "BRIP1," "-," chr17~chr9 59793424 5628790 8 ++ 1.906155 8 5 3 8 10 TCGA-3R-A8YX-01A-11R-A37L-07 CLPTM1L~Nchr1~56800877 intergenic "CLPTM1L," "-," chr5~chr1 1324878 56800877 7 -+ 1.94591 6 3 3 6 34 TCGA-3R-A8YX-01A-11R-A37L-07 CNOT2~CPM fusion "CNOT2," "CPM," chr12~chr12 70672054 69326620 2 +- 0.693147 2 0 2 2 4 TCGA-3R-A8YX-01A-11R-A37L-07 CNOT2~Nchr12~68243651 intergenic "CNOT2," "-," chr12~chr12 70704797 68243651 3 +- 1.098612 3 1 2 3 4 TCGA-3R-A8YX-01A-11R-A37L-07 CNOT2~Nchr12~69371801 intergenic "CNOT2," "-," chr12~chr12 70672054 69371801 5 +- 1.332179 4 1 3 4 6 TCGA-3R-A8YX-01A-11R-A37L-07 CNOT2~SSH3 fusion "CNOT2,CNOT2,CNOT2," "SSH3," chr12~chr11 70637260 67074842 27 ++ 2.294122 25 23 2 25 4 TCGA-3R-A8YX-01A-11R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272795 189856240 2 -+ 0.693147 2 1 1 2 2 TCGA-3R-A8YX-01A-11R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94051229 48267414 4 +- 1.039721 3 1 2 3 2 TCGA-3R-A8YX-01A-11R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94052430 48270175 11 +- 2.019815 6 1 5 6 6 TCGA-3R-A8YX-01A-11R-A37L-07 DDB1~SDHA fusion "DDB1," "SDHA," chr11~chr5 61080971 235259 13 -+ 1.631345 13 0 13 13 104 TCGA-3R-A8YX-01A-11R-A37L-07 E2F7~RAP1B fusion "E2F7," "RAP1B," chr12~chr12 77458323 69042479 14 -+ 2.007556 13 7 6 13 30 TCGA-3R-A8YX-01A-11R-A37L-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 2 +- 0.693147 2 1 1 2 10 TCGA-3R-A8YX-01A-11R-A37L-07 FRS2~CNOT2 fusion "FRS2," "CNOT2," chr12~chr12 69864310 70671912 8 ++ 1.386294 8 6 2 8 24 TCGA-3R-A8YX-01A-11R-A37L-07 FRS2~LEMD3 fusion "FRS2," "LEMD3," chr12~chr12 69864310 65632282 3 ++ 1.098612 3 1 2 3 28 TCGA-3R-A8YX-01A-11R-A37L-07 FRS2~Nchr12~61243702 intergenic "FRS2," "-," chr12~chr12 69864310 61243702 20 ++ 2.458204 19 6 13 19 86 TCGA-3R-A8YX-01A-11R-A37L-07 FRS2~Nchr12~70472043 intergenic "FRS2," "-," chr12~chr12 69964297 70472043 8 ++ 1.732868 8 6 2 8 2 TCGA-3R-A8YX-01A-11R-A37L-07 FRS2~Nchr12~70475719 intergenic "FRS2," "-," chr12~chr12 69964297 70475719 3 ++ 1.098612 2 2 0 2 12 TCGA-3R-A8YX-01A-11R-A37L-07 FRS2~Nchr12~71318888 intergenic "FRS2," "-," chr12~chr12 69931763 71318888 5 ++ 1.609438 3 2 1 3 4 TCGA-3R-A8YX-01A-11R-A37L-07 FRS2~TBC1D15 fusion "FRS2," "TBC1D15," chr12~chr12 69931763 72265850 5 ++ 1.332179 5 3 2 5 128 TCGA-3R-A8YX-01A-11R-A37L-07 FRS2~TBC1D15 fusion "FRS2," "TBC1D15," chr12~chr12 69925836 72265850 24 ++ 2.535025 17 8 9 17 118 TCGA-3R-A8YX-01A-11R-A37L-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31237288 31323000 6 -- 1.242453 6 5 1 6 6 TCGA-3R-A8YX-01A-11R-A37L-07 HMGA2~Nchr12~61994330 intergenic "HMGA2," "-," chr12~chr12 66218968 61994330 3 -+ 1.098612 3 3 0 3 4 TCGA-3R-A8YX-01A-11R-A37L-07 HMGA2~Nchr12~68758809 intergenic "HMGA2," "-," chr12~chr12 66232349 68758809 2 ++ 0.693147 2 1 1 2 4 TCGA-3R-A8YX-01A-11R-A37L-07 KDM2A~Nchr11~56524640 intergenic "KDM2A," "-," chr11~chr11 66999431 56524640 2 +- 0.693147 2 1 1 2 2 TCGA-3R-A8YX-01A-11R-A37L-07 KDM2A~OR9G4 fusion "KDM2A," "OR9G4," chr11~chr11 66999431 56511264 4 +- 1.039721 4 1 3 4 8 TCGA-3R-A8YX-01A-11R-A37L-07 KDM4C~Nchr20~29638051 intergenic "KDM4C," "-," chr9~chr20 6814745 29638051 2 +- 0.693147 2 0 2 2 8 TCGA-3R-A8YX-01A-11R-A37L-07 KPNB1~Nchr15~46867325 intergenic "KPNB1," "-," chr17~chr15 45742524 46867325 4 ++ 1.386294 3 0 3 3 42 TCGA-3R-A8YX-01A-11R-A37L-07 KPNB1~Nchr15~46870405 intergenic "KPNB1," "-," chr17~chr15 45742524 46870405 21 ++ 2.466577 16 12 4 16 34 TCGA-3R-A8YX-01A-11R-A37L-07 NEXN~PTGFR fusion "NEXN," "PTGFR," chr1~chr1 78354444 78958357 16 ++ 2.479956 16 11 5 16 14 TCGA-3R-A8YX-01A-11R-A37L-07 NUP107~Nchr12~63504134 intergenic "NUP107," "-," chr12~chr12 69129124 63504134 4 +- 1.386294 3 1 2 3 12 TCGA-3R-A8YX-01A-11R-A37L-07 Nchr10~107729821~Nchr10~107433446 intergenic "-," "-," chr10~chr10 107729821 107433446 2 -- 0.693147 2 2 0 2 8 TCGA-3R-A8YX-01A-11R-A37L-07 Nchr10~75502883~Nchr10~75504023 intergenic "-," "-," chr10~chr10 75502883 75504023 2 +- 0.693147 2 0 2 2 2 TCGA-3R-A8YX-01A-11R-A37L-07 Nchr10~91738461~SNRPD2 intergenic "-," "SNRPD2," chr10~chr19 91738461 46195211 4 -- 1.039721 4 0 4 4 10 TCGA-3R-A8YX-01A-11R-A37L-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 40 -+ 2.11767 18 0 18 18 40 TCGA-3R-A8YX-01A-11R-A37L-07 Nchr12~61245435~Nchr12~61488650 intergenic "-," "-," chr12~chr12 61245435 61488650 5 ++ 1.332179 5 1 4 5 2 TCGA-3R-A8YX-01A-11R-A37L-07 Nchr12~61245435~Nchr12~61542871 intergenic "-," "-," chr12~chr12 61245435 61542871 12 ++ 1.907284 12 8 4 12 26 TCGA-3R-A8YX-01A-11R-A37L-07 Nchr12~61543064~Nchr12~81147547 intergenic "-," "-," chr12~chr12 61543064 81147547 14 ++ 2.304619 10 8 2 10 8 TCGA-3R-A8YX-01A-11R-A37L-07 Nchr12~61543064~RP11-150C16.1 intergenic "-," "RP11-150C16.1," chr12~chr12 61543064 59371630 9 +- 1.889159 8 2 6 8 18 TCGA-3R-A8YX-01A-11R-A37L-07 Nchr12~63359242~Nchr12~63359392 intergenic "-," "-," chr12~chr12 63359242 63359392 2 -- 0.693147 2 2 0 2 6 TCGA-3R-A8YX-01A-11R-A37L-07 Nchr12~65893708~Nchr12~70549257 intergenic "-," "-," chr12~chr12 65893708 70549257 10 -+ 2.302585 8 4 4 8 18 TCGA-3R-A8YX-01A-11R-A37L-07 Nchr12~67845951~Nchr12~69463787 intergenic "-," "-," chr12~chr12 67845951 69463787 5 +- 1.332179 4 0 4 4 2 TCGA-3R-A8YX-01A-11R-A37L-07 Nchr12~67845951~Nchr12~69465962 intergenic "-," "-," chr12~chr12 67845951 69465962 4 +- 1.039721 3 0 3 3 2 TCGA-3R-A8YX-01A-11R-A37L-07 Nchr12~71318944~TBC1D15 intergenic "-," "TBC1D15," chr12~chr12 71318944 72265850 5 ++ 1.609438 4 0 4 4 10 TCGA-3R-A8YX-01A-11R-A37L-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 5 ++ 1.332179 4 1 3 4 4 TCGA-3R-A8YX-01A-11R-A37L-07 Nchr19~50223254~RPS9 intergenic "-," "RPS9," chr19~chr19 50223254 54704726 3 ++ 0.636514 3 0 3 3 30 TCGA-3R-A8YX-01A-11R-A37L-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 75 -+ 2.995172 68 38 30 68 286 TCGA-3R-A8YX-01A-11R-A37L-07 Nchr2~139258325~Nchr2~139057107 intergenic "-," "-," chr2~chr2 139258325 139057107 2 -- 0.693147 2 0 2 2 2 TCGA-3R-A8YX-01A-11R-A37L-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 20 ++ 2.085468 17 16 1 17 6 TCGA-3R-A8YX-01A-11R-A37L-07 Nchr9~29212088~Nchr9~28947912 intergenic "-," "-," chr9~chr9 29212088 28947912 5 -- 1.332179 2 0 2 2 4 TCGA-3R-A8YX-01A-11R-A37L-07 Nchr9~85111773~Nchr9~85314704 intergenic "-," "-," chr9~chr9 85111773 85314704 4 ++ 1.386294 4 1 3 4 2 TCGA-3R-A8YX-01A-11R-A37L-07 Nchr9~85111773~Nchr9~85365672 intergenic "-," "-," chr9~chr9 85111773 85365672 3 ++ 1.098612 2 1 1 2 18 TCGA-3R-A8YX-01A-11R-A37L-07 Nchr9~85111773~Nchr9~85394794 intergenic "-," "-," chr9~chr9 85111773 85394794 6 ++ 1.791759 6 2 4 6 16 TCGA-3R-A8YX-01A-11R-A37L-07 RAB3IP~FRS2 fusion "RAB3IP," "FRS2," chr12~chr12 70132811 69955960 64 ++ 2.90769 61 22 39 61 154 TCGA-3R-A8YX-01A-11R-A37L-07 RAB3IP~Nchr12~67845887 intergenic "RAB3IP," "-," chr12~chr12 70150443 67845887 62 ++ 3.057333 53 15 38 53 104 TCGA-3R-A8YX-01A-11R-A37L-07 RFX3~Nchr9~8241503 intergenic "RFX3," "-," chr9~chr9 3488776 8241503 7 -+ 1.475076 7 5 2 7 42 TCGA-3R-A8YX-01A-11R-A37L-07 RFX3~Nchr9~8241503 intergenic "RFX3," "-," chr9~chr9 3525747 8241503 22 -+ 2.093809 21 5 16 21 16 TCGA-3R-A8YX-01A-11R-A37L-07 RP11-466L17.1~RP11-90C4.1 fusion "RP11-466L17.1," "RP11-90C4.1," chr1~chr1 56080675 56297937 3 ++ 1.098612 3 2 1 3 4 TCGA-3R-A8YX-01A-11R-A37L-07 RPS12~Nchr6~151547126 intergenic "RPS12," "-," chr6~chr6 133135708 151547126 2 -- 0.693147 2 0 2 2 12 TCGA-3R-A8YX-01A-11R-A37L-07 RPS6~Nchr9~19200482 intergenic "RPS6," "-," chr9~chr9 19376625 19200482 2 ++ 0.693147 1 1 0 1 12 TCGA-3R-A8YX-01A-11R-A37L-07 RPSAP52~Nchr12~61994330 intergenic "RPSAP52," "-," chr12~chr12 66220623 61994330 12 -+ 1.86368 12 10 2 12 24 TCGA-3R-A8YX-01A-11R-A37L-07 SMYD3~Nchr1~208854277 intergenic "SMYD3," "-," chr1~chr1 246490503 208854277 23 -- 2.630555 22 15 7 22 38 TCGA-3R-A8YX-01A-11R-A37L-07 SMYD3~Nchr1~208854277 intergenic "SMYD3," "-," chr1~chr1 246350045 208854277 5 -- 1.609438 5 2 3 5 6 TCGA-3R-A8YX-01A-11R-A37L-07 SOLH~Nchr16~801047 intergenic "SOLH," "-," chr16~chr16 586142 801047 15 ++ 2.303488 15 6 9 15 60 TCGA-3R-A8YX-01A-11R-A37L-07 TBK1~Nchr12~61774131 intergenic "TBK1," "-," chr12~chr12 64860862 61774131 5 +- 1.332179 5 3 2 5 4 TCGA-3R-A8YX-01A-11R-A37L-07 TBK1~Nchr12~61846053 intergenic "TBK1," "-," chr12~chr12 64860862 61846053 30 +- 2.528423 30 15 15 30 134 TCGA-3R-A8YX-01A-11R-A37L-07 TBK1~Nchr12~61862447 intergenic "TBK1," "-," chr12~chr12 64860862 61862447 2 +- 0.693147 2 1 1 2 12 TCGA-3R-A8YX-01A-11R-A37L-07 TBK1~Nchr12~73997342 intergenic "TBK1," "-," chr12~chr12 64854109 73997342 3 +- 1.098612 2 0 2 2 4 TCGA-3R-A8YX-01A-11R-A37L-07 TMTC2~FRS2 fusion "TMTC2," "FRS2," chr12~chr12 83081448 69924645 3 ++ 1.098612 3 1 2 3 2 TCGA-3R-A8YX-01A-11R-A37L-07 TMTC2~RP11-956E11.1 fusion "TMTC2," "RP11-956E11.1," chr12~chr12 83081448 69854385 5 ++ 1.332179 5 0 5 5 22 TCGA-3R-A8YX-01A-11R-A37L-07 UVRAG~MS4A8B fusion "UVRAG," "MS4A8B," chr11~chr11 75718665 60470851 10 ++ 2.163956 10 3 7 10 36 TCGA-3R-A8YX-01A-11R-A37L-07 XPOT~CNOT2 fusion "XPOT," "CNOT2," chr12~chr12 64798588 70704262 14 ++ 2.242973 14 9 5 14 16 TCGA-DX-A8BN-01A-11R-A37L-07 CEP89~CEACAM1 fusion "CEP89," "CEACAM1," chr19~chr19 33406243 43016631 2 -- 0.693147 2 2 0 2 20 TCGA-DX-A8BN-01A-11R-A37L-07 COL3A1~Nchr2~189735750 intergenic "COL3A1," "-," chr2~chr2 189870183 189735750 2 ++ 0.693147 2 0 2 2 2 TCGA-DX-A8BN-01A-11R-A37L-07 CYB5D1~Nchr16~8741338 intergenic "CYB5D1," "-," chr17~chr16 7767311 8741338 2 -+ 0.693147 2 0 2 2 44 TCGA-DX-A8BN-01A-11R-A37L-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 589 -- 2.487039 589 589 0 589 294 TCGA-DX-A8BN-01A-11R-A37L-07 IL4R~ACMSD fusion "IL4R," "ACMSD," chr16~chr2 27325341 135655911 5 ++ 1.332179 5 2 3 5 100 TCGA-DX-A8BN-01A-11R-A37L-07 KIAA0355~SLC7A9 fusion "KIAA0355," "SLC7A9," chr19~chr19 34840058 33324229 64 +- 2.896194 62 24 38 62 148 TCGA-DX-A8BN-01A-11R-A37L-07 Nchr10~70039076~ITFG1 intergenic "-," "ITFG1," chr10~chr16 70039076 47409851 90 +- 2.538443 90 90 0 90 94 TCGA-DX-A8BN-01A-11R-A37L-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 79 -+ 2.38092 32 0 32 32 42 TCGA-DX-A8BN-01A-11R-A37L-07 Nchr16~8741647~ITFG1 intergenic "-," "ITFG1," chr16~chr16 8741647 47409851 45 +- 2.514477 20 20 0 20 26 TCGA-DX-A8BN-01A-11R-A37L-07 Nchr18~22306721~Nchr18~22515946 intergenic "-," "-," chr18~chr18 22306721 22515946 2 ++ 0.693147 2 1 1 2 2 TCGA-DX-A8BN-01A-11R-A37L-07 Nchr19~33667349~KIAA0355 intergenic "-," "KIAA0355," chr19~chr19 33667349 34838782 3 -+ 1.098612 3 2 1 3 2 TCGA-DX-A8BN-01A-11R-A37L-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 33 -+ 2.716834 28 16 12 28 210 TCGA-DX-A8BN-01A-11R-A37L-07 Nchr2~81709228~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81709228 82075877 2 ++ 0.693147 2 1 1 2 4 TCGA-DX-A8BN-01A-11R-A37L-07 Nchr2~81775871~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81775871 82075877 7 ++ 1.94591 5 3 2 5 22 TCGA-DX-A8BN-01A-11R-A37L-07 Nchr6~29855766~HLA-C intergenic "-," "HLA-C," chr6~chr6 29855766 31239559 1 -- 0 1 0 1 1 62 TCGA-DX-A8BN-01A-11R-A37L-07 Nchr6~8558876~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8558876 8784424 15 ++ 2.245952 5 1 4 5 4 TCGA-DX-A8BN-01A-11R-A37L-07 Nchr7~47195403~AC004901.1 intergenic "-," "AC004901.1," chr7~chr7 47195403 46930378 2 -- 0.693147 2 1 1 2 4 TCGA-DX-A8BN-01A-11R-A37L-07 Nchr7~47195403~AC004901.1 intergenic "-," "AC004901.1," chr7~chr7 47195403 46977095 6 -- 1.791759 6 2 4 6 10 TCGA-DX-A8BN-01A-11R-A37L-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 5 +- 1.05492 5 0 5 5 4 TCGA-DX-A8BN-01A-11R-A37L-07 TMOD3~Nchr15~46156215 intergenic "TMOD3," "-," chr15~chr15 52155207 46156215 2 ++ 0.693147 2 1 1 2 4 TCGA-DX-A8BK-01A-11R-A37L-07 ABR~Nchr13~38088858 intergenic "ABR," "-," chr17~chr13 953290 38088858 4 -- 1.386294 4 2 2 4 6 TCGA-DX-A8BK-01A-11R-A37L-07 ABR~RP11-14O22.1 fusion "ABR," "RP11-14O22.1," chr17~chr13 953290 38058530 18 -- 2.370135 18 12 6 18 24 TCGA-DX-A8BK-01A-11R-A37L-07 ABR~RP11-14O22.1 fusion "ABR," "RP11-14O22.1," chr17~chr13 934838 38058530 6 -- 1.56071 6 4 2 6 6 TCGA-DX-A8BK-01A-11R-A37L-07 ATRX~EFCAB4B fusion "ATRX," "EFCAB4B," chrX~chr12 77041468 3822483 2 -- 0.693147 2 2 0 2 24 TCGA-DX-A8BK-01A-11R-A37L-07 BASP1~RP11-454P21.1 fusion "BASP1," "RP11-454P21.1," chr5~chr5 17217919 17920336 8 ++ 1.732868 7 3 4 7 28 TCGA-DX-A8BK-01A-11R-A37L-07 BASP1~RP11-454P21.1 fusion "BASP1," "RP11-454P21.1," chr5~chr5 17217919 17926933 2 ++ 0.693147 2 0 2 2 14 TCGA-DX-A8BK-01A-11R-A37L-07 BASP1~RP11-454P21.1 fusion "BASP1," "RP11-454P21.1," chr5~chr5 17217919 17955803 2 ++ 0.693147 2 0 2 2 4 TCGA-DX-A8BK-01A-11R-A37L-07 C5orf32~Nchr5~1681350 intergenic "C5orf32," "-," chr5~chr5 139574237 1681350 7 +- 1.747868 5 4 1 5 20 TCGA-DX-A8BK-01A-11R-A37L-07 CHD4~Nchr19~30226254 intergenic "CHD4," "-," chr12~chr19 6696550 30226254 20 -+ 2.484367 19 5 14 19 40 TCGA-DX-A8BK-01A-11R-A37L-07 DPY19L3~Nchr19~34320815 intergenic "DPY19L3," "-," chr19~chr19 32930816 34320815 4 +- 1.039721 4 0 4 4 14 TCGA-DX-A8BK-01A-11R-A37L-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 6 +- 1.329661 6 4 2 6 42 TCGA-DX-A8BK-01A-11R-A37L-07 EHD4~AC074093.1 fusion "EHD4," "AC074093.1," chr15~chr2 42264457 145939771 4 -+ 1.039721 4 3 1 4 12 TCGA-DX-A8BK-01A-11R-A37L-07 ENO1~Nchr1~236648076 intergenic "ENO1," "-," chr1~chr1 8921250 236648076 2 -- 0.693147 1 1 0 1 6 TCGA-DX-A8BK-01A-11R-A37L-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31236793 31321968 5 -- 0.500402 5 4 1 5 832 TCGA-DX-A8BK-01A-11R-A37L-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 607 -- 2.526748 607 607 0 607 258 TCGA-DX-A8BK-01A-11R-A37L-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 2607 -- 2.471203 1221 313 906 1221 8 TCGA-DX-A8BK-01A-11R-A37L-07 MATR3~DNAH5 fusion "MATR3," "DNAH5," chr5~chr5 138629494 13692244 2 +- 0.693147 2 2 0 2 10 TCGA-DX-A8BK-01A-11R-A37L-07 MTUS2~SIRT7 fusion "MTUS2," "SIRT7," chr13~chr17 30054501 79875843 4 +- 1.386294 3 3 0 3 6 TCGA-DX-A8BK-01A-11R-A37L-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 90 -+ 2.607886 41 0 41 41 26 TCGA-DX-A8BK-01A-11R-A37L-07 Nchr16~15794597~Nchr16~15794787 intergenic "-," "-," chr16~chr16 15794597 15794787 2 -- 0.693147 2 1 1 2 2 TCGA-DX-A8BK-01A-11R-A37L-07 Nchr19~32035749~CHD4 intergenic "-," "CHD4," chr19~chr12 32035749 6682435 5 -- 1.05492 5 2 3 5 10 TCGA-DX-A8BK-01A-11R-A37L-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 70 -+ 2.702834 65 26 39 65 340 TCGA-DX-A8BK-01A-11R-A37L-07 Nchr1~171639784~Nchr1~171639676 intergenic "-," "-," chr1~chr1 171639784 171639676 1 ++ 0 1 1 0 1 10 TCGA-DX-A8BK-01A-11R-A37L-07 Nchr2~177065788~Nchr2~177065931 intergenic "-," "-," chr2~chr2 177065788 177065931 3 -- 0.636514 3 1 2 3 44 TCGA-DX-A8BK-01A-11R-A37L-07 Nchr6~29895882~HLA-B intergenic "-," "HLA-B," chr6~chr6 29895882 31324046 3 -- 1.098612 3 2 1 3 278 TCGA-DX-A8BK-01A-11R-A37L-07 NchrX~121758928~NchrX~150874595 intergenic "-," "-," chrX~chrX 121758928 150874595 16 -- 2.252728 16 7 9 16 40 TCGA-DX-A8BK-01A-11R-A37L-07 PDZD4~MTCP1 fusion "PDZD4," "MTCP1NB,MTCP1," chrX~chrX 153095694 154292308 16 -- 2.220025 14 3 11 14 14 TCGA-DX-A8BK-01A-11R-A37L-07 PDZD4~MTCP1 fusion "PDZD4," "MTCP1,MTCP1NB," chrX~chrX 153095694 154299188 25 -- 2.116094 24 9 15 24 28 TCGA-DX-A8BK-01A-11R-A37L-07 RENBP~NchrX~124372996 intergenic "RENBP," "-," chrX~chrX 153208998 124372996 9 -- 2.043192 8 3 5 8 28 TCGA-DX-A8BK-01A-11R-A37L-07 SMG6~MEF2A fusion "SMG6," "MEF2A," chr17~chr15 2185941 100095154 3 -+ 1.098612 3 1 2 3 2 TCGA-DX-A8BK-01A-11R-A37L-07 ST3GAL1~NchrX~81742255 intergenic "ST3GAL1," "-," chr8~chrX 134558017 81742255 2 -- 0.693147 2 0 2 2 2 TCGA-DX-A8BK-01A-11R-A37L-07 TMEM108~NchrX~86168588 intergenic "TMEM108," "-," chr3~chrX 132948195 86168588 4 ++ 1.386294 2 1 1 2 2 TCGA-DX-A8BK-01A-11R-A37L-07 TMEM108~NchrX~86169736 intergenic "TMEM108," "-," chr3~chrX 132948195 86169736 20 ++ 2.163956 9 3 6 9 18 TCGA-DX-A8BH-01A-11R-A37L-07 ACO1~Nchr9~30727194 intergenic "ACO1," "-," chr9~chr9 32408649 30727194 7 ++ 1.747868 7 4 3 7 20 TCGA-DX-A8BH-01A-11R-A37L-07 ACO1~Nchr9~30776477 intergenic "ACO1," "-," chr9~chr9 32408649 30776477 5 ++ 1.609438 5 3 2 5 20 TCGA-DX-A8BH-01A-11R-A37L-07 C7orf58~Nchr3~165914686 intergenic "C7orf58," "-," chr7~chr3 120782195 165914686 27 +- 2.640947 26 9 17 26 52 TCGA-DX-A8BH-01A-11R-A37L-07 C7orf58~Nchr3~165929565 intergenic "C7orf58," "-," chr7~chr3 120782195 165929565 12 +- 2.138333 12 7 5 12 70 TCGA-DX-A8BH-01A-11R-A37L-07 CHSY3~Nchr7~137979988 intergenic "CHSY3," "-," chr5~chr7 129244053 137979988 5 +- 1.332179 5 3 2 5 2 TCGA-DX-A8BH-01A-11R-A37L-07 CLASP1~Nchr2~121109557 intergenic "CLASP1," "-," chr2~chr2 122406948 121109557 5 -- 0.950271 5 4 1 5 16 TCGA-DX-A8BH-01A-11R-A37L-07 COPB2~Nchr3~138657426 intergenic "COPB2," "-," chr3~chr3 139108390 138657426 2 -+ 0.693147 1 1 0 1 6 TCGA-DX-A8BH-01A-11R-A37L-07 DLG1~FAIM fusion "DLG1," "FAIM," chr3~chr3 196921296 138340249 5 -+ 1.332179 5 2 3 5 34 TCGA-DX-A8BH-01A-11R-A37L-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 2 +- 0.693147 2 1 1 2 44 TCGA-DX-A8BH-01A-11R-A37L-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 340 -- 2.588459 340 339 1 340 50 TCGA-DX-A8BH-01A-11R-A37L-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 686 -- 2.43334 503 52 445 503 56 TCGA-DX-A8BH-01A-11R-A37L-07 MFSD1~C3orf57 fusion "MFSD1," "C3orf57," chr3~chr3 158531856 161077682 4 +- 1.386294 4 3 1 4 8 TCGA-DX-A8BH-01A-11R-A37L-07 MFSD1~CLDN11 fusion "MFSD1," "CLDN11," chr3~chr3 158527076 170472178 9 ++ 1.889159 9 3 6 9 184 TCGA-DX-A8BH-01A-11R-A37L-07 MFSD1~CLDN11 fusion "MFSD1," "CLDN11," chr3~chr3 158531856 170472178 223 ++ 2.995617 216 88 126 216 734 TCGA-DX-A8BH-01A-11R-A37L-07 MFSD1~CLDN11 fusion "MFSD1," "CLDN11," chr3~chr3 158531856 170472181 46 ++ 2.716977 45 16 29 45 728 TCGA-DX-A8BH-01A-11R-A37L-07 MFSD1~CLDN11 fusion "MFSD1," "CLDN11," chr3~chr3 158531856 170477308 8 ++ 1.732868 6 3 3 6 4 TCGA-DX-A8BH-01A-11R-A37L-07 MFSD1~CLDN11 fusion "MFSD1," "CLDN11," chr3~chr3 158531856 170577779 5 ++ 1.609438 5 2 3 5 342 TCGA-DX-A8BH-01A-11R-A37L-07 MRPL3~Nchr3~131203075 intergenic "MRPL3," "-," chr3~chr3 131206524 131203075 6 -+ 1.56071 5 3 2 5 6 TCGA-DX-A8BH-01A-11R-A37L-07 Nchr10~91738461~SNRPD2 intergenic "-," "SNRPD2," chr10~chr19 91738461 46195211 2 -- 0.693147 2 0 2 2 4 TCGA-DX-A8BH-01A-11R-A37L-07 Nchr11~121506071~Nchr11~121740030 intergenic "-," "-," chr11~chr11 121506071 121740030 11 ++ 2.145842 9 1 8 9 20 TCGA-DX-A8BH-01A-11R-A37L-07 Nchr11~39142139~Nchr11~38900910 intergenic "-," "-," chr11~chr11 39142139 38900910 5 -- 1.609438 5 1 4 5 8 TCGA-DX-A8BH-01A-11R-A37L-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 54 -+ 2.349787 23 0 23 23 54 TCGA-DX-A8BH-01A-11R-A37L-07 Nchr12~120720320~NME1-NME2 intergenic "-," "NME2,NME1-NME2," chr12~chr17 120720320 49245691 6 -+ 1.242453 6 2 4 6 152 TCGA-DX-A8BH-01A-11R-A37L-07 Nchr12~74544782~Nchr12~74336041 intergenic "-," "-," chr12~chr12 74544782 74336041 4 -- 1.386294 2 1 1 2 6 TCGA-DX-A8BH-01A-11R-A37L-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 9 -- 1.889159 7 1 6 7 8 TCGA-DX-A8BH-01A-11R-A37L-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 27 -+ 2.814359 24 10 14 24 108 TCGA-DX-A8BH-01A-11R-A37L-07 Nchr1~188113092~Nchr1~188334664 intergenic "-," "-," chr1~chr1 188113092 188334664 3 ++ 1.098612 3 1 2 3 6 TCGA-DX-A8BH-01A-11R-A37L-07 Nchr1~55804451~RP11-466L17.1 intergenic "-," "RP11-466L17.1," chr1~chr1 55804451 56080594 6 ++ 1.56071 6 5 1 6 8 TCGA-DX-A8BH-01A-11R-A37L-07 Nchr20~33104213~DYNLRB1 intergenic "-," "DYNLRB1," chr20~chr20 33104213 33114109 2 -+ 0.693147 1 1 0 1 22 TCGA-DX-A8BH-01A-11R-A37L-07 Nchr3~162007694~NAALADL2 intergenic "-," "NAALADL2," chr3~chr3 162007694 174260314 4 -- 1.039721 3 0 3 3 16 TCGA-DX-A8BH-01A-11R-A37L-07 Nchr3~164177645~CLDN11 intergenic "-," "CLDN11," chr3~chr3 164177645 170425833 4 ++ 1.039721 4 0 4 4 32 TCGA-DX-A8BH-01A-11R-A37L-07 Nchr6~153603717~Nchr6~153603872 intergenic "-," "-," chr6~chr6 153603717 153603872 3 -- 1.098612 2 0 2 2 14 TCGA-DX-A8BH-01A-11R-A37L-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 14 ++ 2.044931 14 14 0 14 14 TCGA-DX-A8BH-01A-11R-A37L-07 PTGES3~Nchr6~141137367 intergenic "PTGES3," "-," chr12~chr6 57081782 141137367 7 -- 1.94591 6 2 4 6 24 TCGA-DX-A8BH-01A-11R-A37L-07 RNF38~CCL19 fusion "RNF38," "CCL19," chr9~chr9 36487305 34690339 58 -- 2.980046 57 57 0 57 32 TCGA-DX-A8BH-01A-11R-A37L-07 RNF38~Nchr9~32370028 intergenic "RNF38," "-," chr9~chr9 36369716 32370028 3 -+ 1.098612 3 1 2 3 108 TCGA-DX-A8BH-01A-11R-A37L-07 RNF38~Nchr9~32370166 intergenic "RNF38," "-," chr9~chr9 36369716 32370166 2 -+ 0.693147 2 1 1 2 136 TCGA-DX-A8BH-01A-11R-A37L-07 RNF38~Nchr9~32370180 intergenic "RNF38," "-," chr9~chr9 36369716 32370180 33 -+ 2.501231 32 12 20 32 120 TCGA-DX-A8BH-01A-11R-A37L-07 RNF38~Nchr9~35619902 intergenic "RNF38," "-," chr9~chr9 36336890 35619902 4 -+ 1.386294 4 0 4 4 2 TCGA-DX-A8BH-01A-11R-A37L-07 RP1-34H18.1~RP11-781A6.1 fusion "RP1-34H18.1," "RP11-781A6.1," chr12~chr12 77966046 78177043 5 ++ 1.609438 4 1 3 4 12 TCGA-DX-A8BH-01A-11R-A37L-07 RP11-328J2.1~Nchr7~119140163 intergenic "RP11-328J2.1," "-," chr7~chr7 119353720 119140163 13 -- 2.351673 13 12 1 13 36 TCGA-DX-A8BH-01A-11R-A37L-07 RP11-594N15.2~Nchr8~79081296 intergenic "RP11-594N15.2," "-," chr8~chr8 79343091 79081296 2 -- 0.693147 2 2 0 2 4 TCGA-DX-A8BH-01A-11R-A37L-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 5 ++ 1.609438 5 2 3 5 4 TCGA-DX-A8BH-01A-11R-A37L-07 ZCCHC7~UNC13B fusion "ZCCHC7," "UNC13B," chr9~chr9 37126939 35366944 8 ++ 1.494175 8 4 4 8 12 TCGA-DX-A8BU-01A-11R-A37L-07 ABL1~Nchr9~133408525 intergenic "ABL1," "-," chr9~chr9 133603732 133408525 4 ++ 0.693147 4 3 1 4 16 TCGA-DX-A8BU-01A-11R-A37L-07 AFF1~GPRIN3 fusion "AFF1," "GPRIN3," chr4~chr4 87869723 90171384 4 +- 1.386294 4 1 3 4 10 TCGA-DX-A8BU-01A-11R-A37L-07 AFF1~GPRIN3 fusion "AFF1," "GPRIN3," chr4~chr4 87928576 90171384 3 +- 0.636514 3 0 3 3 12 TCGA-DX-A8BU-01A-11R-A37L-07 ATAD1~C10orf11 fusion "ATAD1," "C10orf11," chr10~chr10 89544227 78316967 42 -+ 2.754328 38 6 32 38 96 TCGA-DX-A8BU-01A-11R-A37L-07 C6orf165~LRRFIP1 fusion "C6orf165,SLC35A1," "LRRFIP1," chr6~chr2 88211028 238617187 3 ++ 0.636514 3 1 2 3 2 TCGA-DX-A8BU-01A-11R-A37L-07 CNOT4~Nchr7~137534102 intergenic "CNOT4," "-," chr7~chr7 135194637 137534102 5 -+ 1.609438 4 2 2 4 2 TCGA-DX-A8BU-01A-11R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48270036 94039787 16 -+ 0.233792 12 11 1 12 4 TCGA-DX-A8BU-01A-11R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48269149 94040422 3 -+ 1.098612 1 0 1 1 4 TCGA-DX-A8BU-01A-11R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272086 94050353 2 -+ 0.693147 2 0 2 2 6 TCGA-DX-A8BU-01A-11R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94052269 2 -+ 0.693147 1 0 1 1 14 TCGA-DX-A8BU-01A-11R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48263319 94058563 2 -+ 0.693147 2 2 0 2 4 TCGA-DX-A8BU-01A-11R-A37L-07 CTD-2337A12.1~CAST fusion "CTD-2337A12.1," "CAST," chr5~chr5 95715356 96011243 4 ++ 1.039721 3 1 2 3 10 TCGA-DX-A8BU-01A-11R-A37L-07 EIF3D~RP1-272J12.1 fusion "EIF3D," "RP1-272J12.1," chr22~chr22 36919256 35429408 4 -- 1.386294 4 2 2 4 6 TCGA-DX-A8BU-01A-11R-A37L-07 ELOF1~Nchr19~11670054 intergenic "ELOF1," "-," chr19~chr19 11665131 11670054 3 +- 1.098612 3 0 3 3 8 TCGA-DX-A8BU-01A-11R-A37L-07 GIGYF2~EEF1B2 fusion "GIGYF2," "EEF1B2," chr2~chr2 233594854 207024743 3 ++ 1.098612 1 1 0 1 10 TCGA-DX-A8BU-01A-11R-A37L-07 GLTSCR2~Nchr15~95399083 intergenic "GLTSCR2," "-," chr19~chr15 48253526 95399083 3 ++ 1.098612 2 0 2 2 2 TCGA-DX-A8BU-01A-11R-A37L-07 GMDS~EXOC2 fusion "GMDS," "EXOC2," chr6~chr6 1726650 556564 6 -- 1.56071 5 3 2 5 24 TCGA-DX-A8BU-01A-11R-A37L-07 HELZ~Nchr17~54921151 intergenic "HELZ," "-," chr17~chr17 65082945 54921151 2 -- 0.693147 1 0 1 1 8 TCGA-DX-A8BU-01A-11R-A37L-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 114 -- 2.390224 114 114 0 114 34 TCGA-DX-A8BU-01A-11R-A37L-07 ISOC1~Nchr5~128679362 intergenic "ISOC1," "-," chr5~chr5 128442755 128679362 3 ++ 1.098612 3 2 1 3 12 TCGA-DX-A8BU-01A-11R-A37L-07 KIF13A~UBE2K fusion "KIF13A," "UBE2K," chr6~chr4 17987285 39776454 7 -+ 1.747868 7 4 3 7 16 TCGA-DX-A8BU-01A-11R-A37L-07 LDLRAD3~DEPDC7 fusion "LDLRAD3," "DEPDC7," chr11~chr11 36120011 33054808 7 ++ 1.94591 7 4 3 7 20 TCGA-DX-A8BU-01A-11R-A37L-07 LSAMP~Nchr3~116018482 intergenic "LSAMP," "-," chr3~chr3 115726132 116018482 2 ++ 0.693147 1 1 0 1 8 TCGA-DX-A8BU-01A-11R-A37L-07 LSM14A~ZNF221 fusion "LSM14A," "ZNF221," chr19~chr19 34687668 44466877 5 ++ 1.609438 5 1 4 5 20 TCGA-DX-A8BU-01A-11R-A37L-07 MYH8~Nchr17~10511671 intergenic "MYH8," "-," chr17~chr17 10309555 10511671 8 ++ 1.667462 2 0 2 2 12 TCGA-DX-A8BU-01A-11R-A37L-07 NFKB1~BANK1 fusion "NFKB1," "BANK1," chr4~chr4 103516138 102984232 28 ++ 2.521349 16 0 16 16 6 TCGA-DX-A8BU-01A-11R-A37L-07 NRIP1~AF127936.7 fusion "NRIP1," "AF127936.7," chr21~chr21 16437066 16230029 4 -- 1.386294 4 4 0 4 10 TCGA-DX-A8BU-01A-11R-A37L-07 Nchr11~25633980~Nchr11~25864142 intergenic "-," "-," chr11~chr11 25633980 25864142 3 ++ 1.098612 2 1 1 2 20 TCGA-DX-A8BU-01A-11R-A37L-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 26 -+ 2.251049 15 0 15 15 20 TCGA-DX-A8BU-01A-11R-A37L-07 Nchr14~58448631~SLC35F4 intergenic "-," "SLC35F4," chr14~chr14 58448631 58060842 5 -- 1.609438 5 4 1 5 8 TCGA-DX-A8BU-01A-11R-A37L-07 Nchr16~79619777~Nchr16~79246798 intergenic "-," "-," chr16~chr16 79619777 79246798 6 -- 1.56071 6 2 4 6 4 TCGA-DX-A8BU-01A-11R-A37L-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 14 ++ 2.441015 12 3 9 12 28 TCGA-DX-A8BU-01A-11R-A37L-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 19 ++ 2.552085 18 9 9 18 34 TCGA-DX-A8BU-01A-11R-A37L-07 Nchr18~58210410~Nchr18~58279019 intergenic "-," "-," chr18~chr18 58210410 58279019 2 ++ 0.693147 1 0 1 1 10 TCGA-DX-A8BU-01A-11R-A37L-07 Nchr19~50223254~RPS9 intergenic "-," "RPS9," chr19~chr19 50223254 54704726 3 ++ 0.636514 2 0 2 2 18 TCGA-DX-A8BU-01A-11R-A37L-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 28 -+ 2.745854 25 13 11 25 166 TCGA-DX-A8BU-01A-11R-A37L-07 Nchr1~35816322~RPL5 intergenic "-," "RPL5," chr1~chr1 35816322 93297597 5 -+ 1.609438 4 0 4 4 4 TCGA-DX-A8BU-01A-11R-A37L-07 Nchr1~48459706~RP11-543D5.3 intergenic "-," "RP11-543D5.3," chr1~chr1 48459706 48244216 2 -- 0.693147 2 0 2 2 2 TCGA-DX-A8BU-01A-11R-A37L-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 2 ++ 0.693147 2 1 1 2 12 TCGA-DX-A8BU-01A-11R-A37L-07 Nchr2~177065909~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065909 177065788 2 ++ 0.693147 2 0 2 2 2 TCGA-DX-A8BU-01A-11R-A37L-07 Nchr3~115510005~LSAMP intergenic "-," "LSAMP," chr3~chr3 115510005 115725983 5 ++ 1.609438 4 3 1 4 12 TCGA-DX-A8BU-01A-11R-A37L-07 Nchr3~178219040~KCNMB2 intergenic "-," "KCNMB2," chr3~chr3 178219040 178525131 2 ++ 0.693147 1 0 1 1 8 TCGA-DX-A8BU-01A-11R-A37L-07 Nchr4~137671030~RP11-138I17.1 intergenic "-," "RP11-138I17.1," chr4~chr4 137671030 137893151 3 ++ 1.098612 3 2 1 3 20 TCGA-DX-A8BU-01A-11R-A37L-07 Nchr5~37948487~CTD-2116N24.1 intergenic "-," "CTD-2116N24.1," chr5~chr5 37948487 38183806 6 ++ 1.56071 5 1 4 5 18 TCGA-DX-A8BU-01A-11R-A37L-07 Nchr6~158653335~Nchr6~141938120 intergenic "-," "-," chr6~chr6 158653335 141938120 3 ++ 1.098612 3 3 0 3 10 TCGA-DX-A8BU-01A-11R-A37L-07 Nchr6~8438264~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8438264 8784424 2 ++ 0.693147 2 1 1 2 10 TCGA-DX-A8BU-01A-11R-A37L-07 Nchr9~1311032~Nchr18~5667720 intergenic "-," "-," chr9~chr18 1311032 5667720 2 +- 0.693147 1 1 0 1 6 TCGA-DX-A8BU-01A-11R-A37L-07 Nchr9~31973110~ACO1 intergenic "-," "ACO1," chr9~chr9 31973110 32405483 6 ++ 1.791759 4 1 3 4 2 TCGA-DX-A8BU-01A-11R-A37L-07 Nchr9~31973110~Nchr9~32324843 intergenic "-," "-," chr9~chr9 31973110 32324843 6 ++ 1.56071 5 2 3 5 10 TCGA-DX-A8BU-01A-11R-A37L-07 PDE10A~ARMC2 fusion "PDE10A," "ARMC2," chr6~chr6 165956928 109220897 3 -+ 1.098612 3 1 2 3 2 TCGA-DX-A8BU-01A-11R-A37L-07 PDLIM5~RP11-681L8.1 fusion "PDLIM5," "RP11-681L8.1," chr4~chr4 95561601 98313879 6 +- 1.791759 3 2 1 3 6 TCGA-DX-A8BU-01A-11R-A37L-07 PDLIM5~RP11-681L8.1 fusion "PDLIM5," "RP11-681L8.1," chr4~chr4 95561601 98493869 12 +- 1.86368 8 4 4 8 12 TCGA-DX-A8BU-01A-11R-A37L-07 POLE4~Nchr2~75503636 intergenic "POLE4," "-," chr2~chr2 75187273 75503636 3 ++ 1.098612 3 3 0 3 2 TCGA-DX-A8BU-01A-11R-A37L-07 PTK2~TRAPPC9 fusion "PTK2," "TRAPPC9," chr8~chr8 142011224 141310713 11 -- 2.145842 11 9 2 11 34 TCGA-DX-A8BU-01A-11R-A37L-07 PTPN13~Nchr4~95624560 intergenic "PTPN13," "-," chr4~chr4 87666281 95624560 8 +- 1.906155 8 5 3 8 10 TCGA-DX-A8BU-01A-11R-A37L-07 PTPN13~Nchr4~95624875 intergenic "PTPN13," "-," chr4~chr4 87662969 95624875 3 +- 1.098612 3 1 2 3 18 TCGA-DX-A8BU-01A-11R-A37L-07 PTPN13~Nchr4~95624875 intergenic "PTPN13," "-," chr4~chr4 87666281 95624875 35 +- 2.740182 31 17 14 31 96 TCGA-DX-A8BU-01A-11R-A37L-07 RLF~Nchr1~40598375 intergenic "RLF," "-," chr1~chr1 40661436 40598375 4 ++ 1.386294 4 2 2 4 6 TCGA-DX-A8BU-01A-11R-A37L-07 RP11-534G20.3~Nchr4~18466521 intergenic "RP11-534G20.3," "-," chr10~chr4 29704341 18466521 3 +- 0.636514 3 3 0 3 2 TCGA-DX-A8BU-01A-11R-A37L-07 RP11-534G20.3~Nchr4~18520013 intergenic "RP11-534G20.3," "-," chr10~chr4 29704341 18520013 5 +- 1.609438 4 2 2 4 14 TCGA-DX-A8BU-01A-11R-A37L-07 RPS6KA3~NchrX~67705222 intergenic "RPS6KA3," "-," chrX~chrX 20190864 67705222 4 -- 1.386294 4 2 2 4 2 TCGA-DX-A8BU-01A-11R-A37L-07 RPS6~Nchr9~19200482 intergenic "RPS6," "-," chr9~chr9 19376625 19200482 3 ++ 1.098612 2 1 1 2 8 TCGA-DX-A8BU-01A-11R-A37L-07 RUNX2~Nchr18~11159544 intergenic "RUNX2," "-," chr6~chr18 45480144 11159544 3 +- 0.636514 3 1 2 3 10 TCGA-DX-A8BU-01A-11R-A37L-07 SAE1~HAS1 fusion "SAE1," "HAS1," chr19~chr19 47634285 52223148 23 +- 2.524781 23 11 12 23 92 TCGA-DX-A8BU-01A-11R-A37L-07 SAE1~HAS1 fusion "SAE1," "HAS1," chr19~chr19 47634369 52223148 3 +- 1.098612 3 3 0 3 100 TCGA-DX-A8BU-01A-11R-A37L-07 SVIL~Nchr10~17685476 intergenic "SVIL," "-," chr10~chr10 29946898 17685476 3 -+ 1.098612 3 1 2 3 6 TCGA-DX-A8BU-01A-11R-A37L-07 TBCEL~Nchr7~127775443 intergenic "TBCEL," "-," chr11~chr7 120930794 127775443 8 +- 1.906155 8 5 3 8 18 TCGA-DX-A8BU-01A-11R-A37L-07 TBCEL~Nchr7~127775446 intergenic "TBCEL," "-," chr11~chr7 120930794 127775446 2 +- 0.693147 2 1 1 2 16 TCGA-DX-A8BU-01A-11R-A37L-07 TEAD3~ZFAND3 fusion "TEAD3," "ZFAND3," chr6~chr6 35464675 38084348 28 -+ 2.781037 26 2 24 26 28 TCGA-DX-A8BU-01A-11R-A37L-07 TGFBRAP1~DPP10 fusion "TGFBRAP1," "DPP10," chr2~chr2 105912813 115464694 4 -+ 1.386294 4 2 2 4 2 TCGA-DX-A8BU-01A-11R-A37L-07 TGFBRAP1~DPP10 fusion "TGFBRAP1," "DPP10," chr2~chr2 105912813 116066815 9 -+ 1.676988 9 4 5 9 18 TCGA-DX-A8BU-01A-11R-A37L-07 TGFBRAP1~Nchr2~115752706 intergenic "TGFBRAP1," "-," chr2~chr2 105912813 115752706 3 -+ 1.098612 3 1 2 3 6 TCGA-DX-A8BU-01A-11R-A37L-07 TRAPPC9~Nchr8~140221587 intergenic "TRAPPC9," "-," chr8~chr8 141285757 140221587 16 -+ 2.426015 13 9 4 13 14 TCGA-DX-A8BU-01A-11R-A37L-07 UBAC2~Nchr13~99804217 intergenic "UBAC2," "-," chr13~chr13 99853193 99804217 4 +- 1.386294 3 1 2 3 10 TCGA-DX-A8BU-01A-11R-A37L-07 ZFAND3~Nchr6~1529132 intergenic "ZFAND3," "-," chr6~chr6 38084515 1529132 7 ++ 1.94591 7 6 1 7 26 TCGA-DX-A8BU-01A-11R-A37L-07 ZNF100~Nchr19~37988494 intergenic "ZNF100," "-," chr19~chr19 21948496 37988494 15 -- 2.079151 15 9 6 15 56 TCGA-DX-A8BU-01A-11R-A37L-07 ZNF100~Nchr19~37989085 intergenic "ZNF100," "-," chr19~chr19 21948496 37989085 2 -- 0.693147 2 1 1 2 2 TCGA-DX-A8BU-01A-11R-A37L-07 ZNF224~CYP2S1 fusion "ZNF224," "CYP2S1," chr19~chr19 44602041 41711863 26 ++ 2.031332 26 22 4 26 92 TCGA-DX-A8BU-01A-11R-A37L-07 ZNF793~Nchr19~20657398 intergenic "ZNF793," "-," chr19~chr19 38014356 20657398 4 +- 1.039721 4 2 2 4 4 TCGA-QQ-A8VB-01A-11R-A37L-07 C1orf196~KAZN fusion "C1orf196," "KAZN," chr1~chr1 14507087 14925479 2 ++ 0.693147 2 2 0 2 4 TCGA-QQ-A8VB-01A-11R-A37L-07 CNOT2~TBC1D30 fusion "CNOT2,CNOT2,CNOT2," "TBC1D30," chr12~chr12 70637260 65237160 16 ++ 2.220025 14 13 1 14 4 TCGA-QQ-A8VB-01A-11R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264387 94040447 3 -+ 0.636514 3 1 2 3 8 TCGA-QQ-A8VB-01A-11R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271793 94041951 2 -+ 0.693147 1 0 1 1 6 TCGA-QQ-A8VB-01A-11R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94042395 5 -+ 1.609438 3 3 0 3 26 TCGA-QQ-A8VB-01A-11R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48269836 94043206 3 -+ 1.098612 3 3 0 3 18 TCGA-QQ-A8VB-01A-11R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48270358 94049718 4 -+ 1.039721 4 4 0 4 22 TCGA-QQ-A8VB-01A-11R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272593 94054958 3 -+ 1.098612 2 1 1 2 6 TCGA-QQ-A8VB-01A-11R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48265891 94055310 5 -+ 1.609438 5 1 4 5 10 TCGA-QQ-A8VB-01A-11R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047864 48266636 3 +- 1.098612 1 0 1 1 10 TCGA-QQ-A8VB-01A-11R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48268285 2 +- 0.693147 1 0 1 1 30 TCGA-QQ-A8VB-01A-11R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94056607 48270054 10 +- 1.279854 8 6 2 8 18 TCGA-QQ-A8VB-01A-11R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94048863 48273026 3 +- 1.098612 2 1 1 2 24 TCGA-QQ-A8VB-01A-11R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48273560 10 +- 1.609438 5 0 5 5 26 TCGA-QQ-A8VB-01A-11R-A37L-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 25 -- 2.068697 23 0 23 23 46 TCGA-QQ-A8VB-01A-11R-A37L-07 ISOC1~Nchr5~128679362 intergenic "ISOC1," "-," chr5~chr5 128442755 128679362 2 ++ 0.693147 2 2 0 2 4 TCGA-QQ-A8VB-01A-11R-A37L-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 30 -+ 2.13438 16 0 16 16 18 TCGA-QQ-A8VB-01A-11R-A37L-07 Nchr12~24366277~SOX5 intergenic "-," "SOX5," chr12~chr12 24366277 24048958 3 -- 1.098612 2 2 0 2 2 TCGA-QQ-A8VB-01A-11R-A37L-07 Nchr12~95267416~TMCC3 intergenic "-," "TMCC3," chr12~chr12 95267416 94976314 2 -- 0.693147 2 2 0 2 2 TCGA-QQ-A8VB-01A-11R-A37L-07 Nchr16~73925550~Nchr16~73714139 intergenic "-," "-," chr16~chr16 73925550 73714139 8 -- 2.079442 4 3 1 4 2 TCGA-QQ-A8VB-01A-11R-A37L-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 11 ++ 1.893788 10 2 8 10 20 TCGA-QQ-A8VB-01A-11R-A37L-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 15 ++ 2.303488 13 7 6 13 12 TCGA-QQ-A8VB-01A-11R-A37L-07 Nchr18~37331293~Nchr18~37115579 intergenic "-," "-," chr18~chr18 37331293 37115579 2 -- 0.693147 1 1 0 1 10 TCGA-QQ-A8VB-01A-11R-A37L-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 22 -+ 2.570281 22 10 11 22 212 TCGA-QQ-A8VB-01A-11R-A37L-07 Nchr1~187042156~RP11-445P19.1 intergenic "-," "RP11-445P19.1," chr1~chr1 187042156 187412760 4 ++ 1.039721 2 2 0 2 8 TCGA-QQ-A8VB-01A-11R-A37L-07 Nchr1~98523354~Nchr1~98858611 intergenic "-," "-," chr1~chr1 98523354 98858611 2 ++ 0.693147 2 1 1 2 4 TCGA-QQ-A8VB-01A-11R-A37L-07 Nchr2~122702023~Nchr2~122978395 intergenic "-," "-," chr2~chr2 122702023 122978395 7 ++ 1.153742 3 1 2 3 8 TCGA-QQ-A8VB-01A-11R-A37L-07 Nchr4~182788985~ODZ3 intergenic "-," "ODZ3," chr4~chr4 182788985 183694625 4 ++ 1.386294 3 1 2 3 4 TCGA-QQ-A8VB-01A-11R-A37L-07 Nchr7~12134279~THSD7A intergenic "-," "THSD7A," chr7~chr7 12134279 11676588 2 -- 0.693147 2 1 1 2 8 TCGA-QQ-A8VB-01A-11R-A37L-07 NchrX~124318557~ODZ1 intergenic "-," "ODZ1," chrX~chrX 124318557 124097666 5 -- 1.332179 5 4 1 5 10 TCGA-QQ-A8VB-01A-11R-A37L-07 PRR16~CTD-2334D19.1 fusion "PRR16," "CTD-2334D19.1," chr5~chr5 119800340 120125649 2 ++ 0.693147 2 1 1 2 4 TCGA-QQ-A8VB-01A-11R-A37L-07 RP1-45C12.1~Nchr1~170776745 intergenic "RP1-45C12.1," "-," chr1~chr1 171137243 170776745 5 -- 1.332179 4 3 1 4 8 TCGA-QQ-A8VB-01A-11R-A37L-07 RP11-123O10.4~GRIP1 fusion "RP11-123O10.4," "GRIP1," chr12~chr12 67462830 66990707 5 -- 1.609438 3 0 3 3 14 TCGA-QQ-A8VB-01A-11R-A37L-07 RP11-14D22.2~PRICKLE2 fusion "RP11-14D22.2," "RP11-129B22.7,PRICKLE2," chr3~chr3 64430159 64184643 3 -- 1.098612 3 3 0 3 2 TCGA-QQ-A8VB-01A-11R-A37L-07 RP11-371M22.1~Nchr5~113696642 intergenic "RP11-371M22.1," "-," chr5~chr5 113392868 113696642 2 ++ 0.693147 2 2 0 2 10 TCGA-QQ-A8VB-01A-11R-A37L-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 3 +- 1.098612 3 0 3 3 2 TCGA-QQ-A8VB-01A-11R-A37L-07 SHC1~Nchr17~42306882 intergenic "SHC1," "-," chr1~chr17 154938544 42306882 2 ++ 0.693147 1 1 0 1 6 TCGA-QQ-A8VB-01A-11R-A37L-07 TBC1D30~Nchr12~65073725 intergenic "TBC1D30," "-," chr12~chr12 65260683 65073725 2 +- 0.693147 2 0 2 2 16 TCGA-QQ-A8VB-01A-11R-A37L-07 ZMYM3~NchrX~70245742 intergenic "ZMYM3," "-," chrX~chrX 70463679 70245742 2 -- 0.693147 2 0 2 2 14 TCGA-QQ-A8VF-01A-11R-A37L-07 AC073342.12~Nchr7~142736578 intergenic "AC073342.12," "-," chr7~chr7 142952392 142736578 8 -- 1.494175 4 1 3 4 8 TCGA-QQ-A8VF-01A-11R-A37L-07 AK2~Nchr1~59096645 intergenic "AK2," "-," chr1~chr1 33478825 59096645 2 -- 0.693147 2 2 0 2 2 TCGA-QQ-A8VF-01A-11R-A37L-07 C15orf57~CBX3 fusion "C15orf57," "CBX3," chr15~chr7 40854971 26241389 2 -+ 0.693147 2 0 2 2 4 TCGA-QQ-A8VF-01A-11R-A37L-07 CLIP1~RSRC2 fusion "CLIP1," "RSRC2," chr12~chr12 122825300 122992994 9 -- 1.676988 9 5 4 9 26 TCGA-QQ-A8VF-01A-11R-A37L-07 DAZAP2~Nchr2~203066607 intergenic "DAZAP2," "-," chr12~chr2 51632613 203066607 4 -- 1.039721 3 3 0 3 2 TCGA-QQ-A8VF-01A-11R-A37L-07 GAPDH~NchrX~46299827 intergenic "GAPDH," "-," chr12~chrX 6646369 46299827 7 -- 1.549826 3 3 0 3 148 TCGA-QQ-A8VF-01A-11R-A37L-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 105 -- 2.27715 107 103 2 107 38 TCGA-QQ-A8VF-01A-11R-A37L-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238907 31324034 2 -- 0.693147 1 1 0 1 6 TCGA-QQ-A8VF-01A-11R-A37L-07 IMMP2L~Nchr7~110604907 intergenic "IMMP2L," "-," chr7~chr7 111127294 110604907 2 -- 0.693147 2 1 1 2 26 TCGA-QQ-A8VF-01A-11R-A37L-07 LRRC68~ZNF383 fusion "LRRC68," "ZNF383," chr19~chr19 45596785 37721311 30 ++ 3.014077 28 14 14 28 58 TCGA-QQ-A8VF-01A-11R-A37L-07 Nchr10~110747321~RP11-655H13.2 intergenic "-," "RP11-655H13.2," chr10~chr10 110747321 110501019 27 -- 2.599624 23 11 12 23 56 TCGA-QQ-A8VF-01A-11R-A37L-07 Nchr10~110963807~Nchr10~110747417 intergenic "-," "-," chr10~chr10 110963807 110747417 9 -- 1.889159 4 3 1 4 64 TCGA-QQ-A8VF-01A-11R-A37L-07 Nchr11~19619891~NAV2 intergenic "-," "NAV2," chr11~chr11 19619891 19854030 15 ++ 2.303488 13 6 7 13 50 TCGA-QQ-A8VF-01A-11R-A37L-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 121 -+ 2.60529 61 0 61 61 48 TCGA-QQ-A8VF-01A-11R-A37L-07 Nchr19~37709176~CEBPG intergenic "-," "CEBPG," chr19~chr19 37709176 33870050 7 ++ 1.747868 7 6 1 7 6 TCGA-QQ-A8VF-01A-11R-A37L-07 Nchr19~37709176~Nchr19~33853567 intergenic "-," "-," chr19~chr19 37709176 33853567 20 ++ 2.622996 20 20 0 20 36 TCGA-QQ-A8VF-01A-11R-A37L-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 25 -+ 2.508826 24 13 11 24 220 TCGA-QQ-A8VF-01A-11R-A37L-07 Nchr1~171639696~Nchr1~171639868 intergenic "-," "-," chr1~chr1 171639696 171639868 4 -- 1.039721 3 3 0 3 2 TCGA-QQ-A8VF-01A-11R-A37L-07 Nchr2~177065788~Nchr2~177065931 intergenic "-," "-," chr2~chr2 177065788 177065931 3 -- 1.098612 3 0 3 3 48 TCGA-QQ-A8VF-01A-11R-A37L-07 Nchr3~115510005~LSAMP intergenic "-," "LSAMP," chr3~chr3 115510005 115725983 2 ++ 0.693147 2 1 1 2 8 TCGA-QQ-A8VF-01A-11R-A37L-07 Nchr5~109368469~TMEM232 intergenic "-," "TMEM232," chr5~chr5 109368469 109662053 6 ++ 1.56071 6 4 2 6 2 TCGA-QQ-A8VF-01A-11R-A37L-07 Nchr6~29855766~HLA-C intergenic "-," "HLA-C," chr6~chr6 29855766 31239556 2 -- 0.693147 1 0 1 1 96 TCGA-QQ-A8VF-01A-11R-A37L-07 Nchr6~29895882~HLA-B intergenic "-," "HLA-B," chr6~chr6 29895882 31324046 3 -- 1.098612 3 3 0 3 10 TCGA-QQ-A8VF-01A-11R-A37L-07 Nchr6~29897418~HLA-A intergenic "-," "HLA-A," chr6~chr6 29897418 29913504 3 -- 1.098612 3 1 2 3 152 TCGA-QQ-A8VF-01A-11R-A37L-07 Nchr9~33624508~Nchr9~33624745 intergenic "-," "-," chr9~chr9 33624508 33624745 2 -- 0.693147 2 0 2 2 46 TCGA-QQ-A8VF-01A-11R-A37L-07 NchrX~23311131~NchrX~23082238 intergenic "-," "-," chrX~chrX 23311131 23082238 4 -- 1.386294 3 0 3 3 6 TCGA-QQ-A8VF-01A-11R-A37L-07 RP11-123O10.4~GRIP1 fusion "RP11-123O10.4," "GRIP1," chr12~chr12 67462830 66990707 5 -- 1.609438 1 0 1 1 6 TCGA-QQ-A8VF-01A-11R-A37L-07 RP11-1E3.1~RP11-455B3.1 fusion "RP11-1E3.1," "RP11-455B3.1," chr5~chr5 97006388 97217134 6 ++ 1.791759 5 3 2 5 16 TCGA-QQ-A8VF-01A-11R-A37L-07 RP11-430M15.1~Nchr13~101639539 intergenic "RP11-430M15.1," "-," chr13~chr13 101360738 101639539 2 ++ 0.693147 1 0 1 1 10 TCGA-QQ-A8VF-01A-11R-A37L-07 SETX~Nchr9~137337156 intergenic "SETX," "-," chr9~chr9 135171259 137337156 2 -- 0.693147 2 1 1 2 4 TCGA-QQ-A8VF-01A-11R-A37L-07 SETX~Nchr9~137340019 intergenic "SETX," "-," chr9~chr9 135171259 137340019 25 -- 2.451256 24 17 6 24 76 TCGA-QQ-A8VF-01A-11R-A37L-07 SPIRE1~Nchr18~12249601 intergenic "SPIRE1," "-," chr18~chr18 12493071 12249601 9 -- 1.889159 9 5 4 9 8 TCGA-QQ-A8VF-01A-11R-A37L-07 SPIRE1~Nchr18~12279058 intergenic "SPIRE1," "-," chr18~chr18 12493071 12279058 22 -- 2.350327 22 10 12 22 50 TCGA-QQ-A8VF-01A-11R-A37L-07 SPIRE1~Nchr18~12289115 intergenic "SPIRE1," "-," chr18~chr18 12493071 12289115 2 -- 0.693147 2 1 1 2 16 TCGA-QQ-A8VF-01A-11R-A37L-07 SPIRE1~Nchr18~12290172 intergenic "SPIRE1," "-," chr18~chr18 12493071 12290172 5 -- 1.609438 5 3 2 5 40 TCGA-QQ-A8VF-01A-11R-A37L-07 ZNF223~AP2A1 fusion "ZNF223," "AP2A1," chr19~chr19 44559344 50298887 13 ++ 2.031759 12 10 2 12 28 TCGA-PT-A8TR-01A-11R-A37L-07 CEP85~Nchr8~110715808 intergenic "CEP85," "-," chr1~chr8 26598562 110715808 6 +- 1.56071 6 3 3 6 16 TCGA-PT-A8TR-01A-11R-A37L-07 EP300~Nchr1~27765013 intergenic "EP300," "-," chr22~chr1 41523752 27765013 2 ++ 0.693147 2 0 2 2 2 TCGA-PT-A8TR-01A-11R-A37L-07 NFYC~Nchr1~118321262 intergenic "NFYC," "-," chr1~chr1 41218918 118321262 56 ++ 2.589869 56 38 18 56 94 TCGA-PT-A8TR-01A-11R-A37L-07 Nchr11~47213097~RPS20 intergenic "-," "RPS20," chr11~chr8 47213097 56986962 4 +- 1.039721 3 0 3 3 160 TCGA-PT-A8TR-01A-11R-A37L-07 Nchr11~79813071~Nchr11~79432666 intergenic "-," "-," chr11~chr11 79813071 79432666 6 -- 1.56071 1 0 1 1 2 TCGA-PT-A8TR-01A-11R-A37L-07 Nchr11~80096061~Nchr11~79813145 intergenic "-," "-," chr11~chr11 80096061 79813145 5 -- 1.332179 3 2 1 3 2 TCGA-PT-A8TR-01A-11R-A37L-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 41 -+ 2.370795 20 0 20 20 20 TCGA-PT-A8TR-01A-11R-A37L-07 Nchr12~104659073~Nchr12~104659181 intergenic "-," "-," chr12~chr12 104659073 104659181 3 -- 1.098612 3 3 0 3 46 TCGA-PT-A8TR-01A-11R-A37L-07 Nchr12~104659086~Nchr12~104659189 intergenic "-," "-," chr12~chr12 104659086 104659189 2 -- 0.693147 2 1 1 2 76 TCGA-PT-A8TR-01A-11R-A37L-07 Nchr13~76509067~Nchr13~76841631 intergenic "-," "-," chr13~chr13 76509067 76841631 7 ++ 1.94591 6 5 1 6 12 TCGA-PT-A8TR-01A-11R-A37L-07 Nchr13~76509067~Nchr13~76908096 intergenic "-," "-," chr13~chr13 76509067 76908096 3 ++ 1.098612 3 1 2 3 4 TCGA-PT-A8TR-01A-11R-A37L-07 Nchr13~76509067~Nchr13~76928485 intergenic "-," "-," chr13~chr13 76509067 76928485 4 ++ 1.386294 3 2 1 3 4 TCGA-PT-A8TR-01A-11R-A37L-07 Nchr15~26890617~Nchr15~26890730 intergenic "-," "-," chr15~chr15 26890617 26890730 10 -- 1.0889 10 10 0 10 2 TCGA-PT-A8TR-01A-11R-A37L-07 Nchr16~69790871~Nchr16~69790950 intergenic "-," "-," chr16~chr16 69790871 69790950 2 -- 0.693147 2 0 2 2 2 TCGA-PT-A8TR-01A-11R-A37L-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 3 ++ 1.098612 3 2 1 3 4 TCGA-PT-A8TR-01A-11R-A37L-07 Nchr2~238472377~Nchr2~238475211 intergenic "-," "-," chr2~chr2 238472377 238475211 2 -+ 0.693147 2 2 0 2 36 TCGA-PT-A8TR-01A-11R-A37L-07 Nchr2~238472414~PRLH intergenic "-," "PRLH," chr2~chr2 238472414 238475234 2 -+ 0.693147 1 1 0 1 44 TCGA-PT-A8TR-01A-11R-A37L-07 Nchr8~139052582~RP11-238K6.1 intergenic "-," "RP11-238K6.1," chr8~chr8 139052582 138850128 2 -- 0.693147 2 2 0 2 2 TCGA-PT-A8TR-01A-11R-A37L-07 Nchr9~19200532~RPS6 intergenic "-," "RPS6," chr9~chr9 19200532 19378478 3 -- 1.098612 3 0 3 3 70 TCGA-PT-A8TR-01A-11R-A37L-07 NchrX~64295792~NchrX~64586518 intergenic "-," "-," chrX~chrX 64295792 64586518 2 ++ 0.693147 1 0 1 1 10 TCGA-PT-A8TR-01A-11R-A37L-07 PUM1~PLAG1 fusion "PUM1," "PLAG1," chr1~chr8 31538463 57083748 15 -- 1.707539 15 0 15 15 42 TCGA-PT-A8TR-01A-11R-A37L-07 PUM1~PLAG1 fusion "PUM1," "PLAG1," chr1~chr8 31538536 57092072 3 -- 0.636514 3 0 3 3 2 TCGA-PT-A8TR-01A-11R-A37L-07 PUM1~PLAG1 fusion "PUM1," "PLAG1," chr1~chr8 31538463 57092072 23 -- 1.565193 22 3 19 22 78 TCGA-PT-A8TR-01A-11R-A37L-07 RP1-34H18.1~RP11-781A6.1 fusion "RP1-34H18.1," "RP11-781A6.1," chr12~chr12 77966046 78177043 2 ++ 0.693147 2 1 1 2 2 TCGA-PT-A8TR-01A-11R-A37L-07 RP1-45C12.1~Nchr1~170833827 intergenic "RP1-45C12.1," "-," chr1~chr1 171137243 170833827 4 -- 1.039721 2 2 0 2 2 TCGA-PT-A8TR-01A-11R-A37L-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 2 ++ 0.693147 2 1 1 2 6 TCGA-PT-A8TR-01A-11R-A37L-07 RPS10~Nchr6~34712036 intergenic "RPS10," "-," chr6~chr6 34392936 34712036 2 -- 0.693147 1 1 0 1 6 TCGA-PT-A8TR-01A-11R-A37L-07 SLC30A5~Nchr5~71273783 intergenic "SLC30A5," "-," chr5~chr5 68410323 71273783 7 ++ 1.747868 7 2 5 7 52 TCGA-PT-A8TR-01A-11R-A37L-07 SLC30A5~Nchr5~71273849 intergenic "SLC30A5," "-," chr5~chr5 68410323 71273849 4 ++ 1.039721 4 3 1 4 38 TCGA-PT-A8TR-01A-11R-A37L-07 SLC30A5~Nchr5~71285682 intergenic "SLC30A5," "-," chr5~chr5 68410323 71285682 6 ++ 1.098612 6 6 0 6 20 TCGA-LI-A9QH-01A-11R-A37L-07 ADAMTS17~SLC12A1 fusion "ADAMTS17," "SLC12A1," chr15~chr15 100871094 48548008 10 -+ 2.163956 6 1 5 6 12 TCGA-LI-A9QH-01A-11R-A37L-07 ADAMTS2~C5orf60 fusion "ADAMTS2," "C5orf60," chr5~chr5 178699912 179070491 2 -- 0.693147 2 1 1 2 2 TCGA-LI-A9QH-01A-11R-A37L-07 AGMO~Nchr7~15199088 intergenic "AGMO," "-," chr7~chr7 15405139 15199088 4 -- 1.386294 4 1 3 4 2 TCGA-LI-A9QH-01A-11R-A37L-07 CEP89~Nchr19~35374843 intergenic "CEP89," "-," chr19~chr19 33439172 35374843 3 -- 1.098612 3 0 3 3 4 TCGA-LI-A9QH-01A-11R-A37L-07 CMTM7~Nchr3~34692930 intergenic "CMTM7," "-," chr3~chr3 32433557 34692930 2 +- 0.693147 2 0 2 2 6 TCGA-LI-A9QH-01A-11R-A37L-07 DDX10~AIPL1 fusion "DDX10," "AIPL1," chr11~chr17 108594189 6330377 4 +- 1.386294 4 1 3 4 4 TCGA-LI-A9QH-01A-11R-A37L-07 DDX10~AIPL1 fusion "DDX10," "AIPL1," chr11~chr17 108594189 6331826 7 +- 1.94591 7 5 2 7 30 TCGA-LI-A9QH-01A-11R-A37L-07 EPN2~PIBF1 fusion "EPN2," "PIBF1," chr17~chr13 19140844 73467922 10 ++ 1.886697 10 10 0 10 20 TCGA-LI-A9QH-01A-11R-A37L-07 EPN2~PIBF1 fusion "EPN2," "PIBF1," chr17~chr13 19140844 73482669 5 ++ 1.609438 5 5 0 5 8 TCGA-LI-A9QH-01A-11R-A37L-07 ESD~FAM124A fusion "ESD," "FAM124A," chr13~chr13 47367532 51825604 5 -+ 1.332179 5 3 2 5 12 TCGA-LI-A9QH-01A-11R-A37L-07 FBN1~C19orf2 fusion "FBN1," "C19orf2," chr15~chr19 48936803 30462100 5 -+ 1.609438 5 2 3 5 142 TCGA-LI-A9QH-01A-11R-A37L-07 FBN1~C19orf2 fusion "FBN1," "C19orf2," chr15~chr19 48936803 30476130 68 -+ 2.745723 63 18 45 63 124 TCGA-LI-A9QH-01A-11R-A37L-07 FBN1~C19orf2 fusion "FBN1," "C19orf2," chr15~chr19 48936803 30496268 2 -+ 0.693147 2 0 2 2 10 TCGA-LI-A9QH-01A-11R-A37L-07 FXYD5~Nchr19~32829327 intergenic "FXYD5," "-," chr19~chr19 35646514 32829327 9 ++ 1.581094 9 7 2 9 232 TCGA-LI-A9QH-01A-11R-A37L-07 FXYD5~Nchr19~32829438 intergenic "FXYD5," "-," chr19~chr19 35646514 32829438 45 ++ 2.758638 42 24 18 42 214 TCGA-LI-A9QH-01A-11R-A37L-07 GGA1~Nchr18~1729808 intergenic "GGA1," "-," chr22~chr18 38013004 1729808 9 +- 2.197225 9 3 6 9 8 TCGA-LI-A9QH-01A-11R-A37L-07 HACL1~Nchr3~21138665 intergenic "HACL1," "-," chr3~chr3 15631047 21138665 2 -- 0.693147 2 1 1 2 4 TCGA-LI-A9QH-01A-11R-A37L-07 HEATR7A~Nchr8~142889292 intergenic "HEATR7A," "-," chr8~chr8 145223343 142889292 5 +- 1.609438 5 2 3 5 6 TCGA-LI-A9QH-01A-11R-A37L-07 HIF1A~C14orf37 fusion "HIF1A," "C14orf37," chr14~chr14 62162557 58606132 5 +- 1.609438 5 3 2 5 14 TCGA-LI-A9QH-01A-11R-A37L-07 HN1~Nchr2~174296244 intergenic "HN1," "-," chr17~chr2 73143651 174296244 28 -- 1.094172 18 18 0 18 2 TCGA-LI-A9QH-01A-11R-A37L-07 ITGAE~Nchr17~2434769 intergenic "ITGAE," "-," chr17~chr17 3626982 2434769 2 -- 0.693147 2 0 2 2 2 TCGA-LI-A9QH-01A-11R-A37L-07 KDELC2~TAF1D fusion "KDELC2," "TAF1D,C11orf54," chr11~chr11 108368892 93476064 11 -- 2.145842 10 8 2 10 28 TCGA-LI-A9QH-01A-11R-A37L-07 KDSR~ZNF565 fusion "KDSR," "ZNF565," chr18~chr19 60998767 36686058 3 -- 1.098612 3 2 1 3 32 TCGA-LI-A9QH-01A-11R-A37L-07 LRCH1~Nchr15~49272771 intergenic "LRCH1," "-," chr13~chr15 47224480 49272771 12 ++ 1.907284 12 2 10 12 34 TCGA-LI-A9QH-01A-11R-A37L-07 LSAMP~Nchr3~116018482 intergenic "LSAMP," "-," chr3~chr3 115726132 116018482 2 ++ 0.693147 2 1 1 2 8 TCGA-LI-A9QH-01A-11R-A37L-07 MIR497HG~C17orf76 fusion "MIR497HG," "C17orf76," chr17~chr17 6922697 16365700 2 -- 0.693147 2 1 1 2 8 TCGA-LI-A9QH-01A-11R-A37L-07 MIR497HG~C17orf76 fusion "MIR497HG," "C17orf76," chr17~chr17 6922697 16373472 17 -- 2.18084 17 10 7 17 46 TCGA-LI-A9QH-01A-11R-A37L-07 MYH8~Nchr17~10511671 intergenic "MYH8," "-," chr17~chr17 10309555 10511671 3 ++ 1.098612 2 0 2 2 8 TCGA-LI-A9QH-01A-11R-A37L-07 NUMA1~Nchr20~29652124 intergenic "NUMA1," "-," chr11~chr20 71719734 29652124 2 -+ 0.693147 2 0 2 2 14 TCGA-LI-A9QH-01A-11R-A37L-07 Nchr10~77530612~C10orf11 intergenic "-," "C10orf11," chr10~chr10 77530612 77795766 3 ++ 1.098612 3 2 1 3 16 TCGA-LI-A9QH-01A-11R-A37L-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 51 -+ 2.343458 31 0 31 31 34 TCGA-LI-A9QH-01A-11R-A37L-07 Nchr13~77010896~RP11-20O12.1 intergenic "-," "RP11-20O12.1," chr13~chr13 77010896 76587292 2 -- 0.693147 2 1 1 2 4 TCGA-LI-A9QH-01A-11R-A37L-07 Nchr13~77303480~Nchr13~77011004 intergenic "-," "-," chr13~chr13 77303480 77011004 4 -- 1.386294 1 0 1 1 12 TCGA-LI-A9QH-01A-11R-A37L-07 Nchr13~83444186~FLCN intergenic "-," "FLCN," chr13~chr17 83444186 17118221 18 -+ 2.212257 18 5 13 18 16 TCGA-LI-A9QH-01A-11R-A37L-07 Nchr14~28125544~Nchr14~27791347 intergenic "-," "-," chr14~chr14 28125544 27791347 5 -- 1.609438 3 1 2 3 20 TCGA-LI-A9QH-01A-11R-A37L-07 Nchr14~28125649~Nchr14~27791347 intergenic "-," "-," chr14~chr14 28125649 27791347 3 -- 1.098612 3 1 2 3 10 TCGA-LI-A9QH-01A-11R-A37L-07 Nchr14~45066112~Nchr14~44862941 intergenic "-," "-," chr14~chr14 45066112 44862941 18 -- 2.13524 11 7 4 11 16 TCGA-LI-A9QH-01A-11R-A37L-07 Nchr14~45267133~Nchr14~45066216 intergenic "-," "-," chr14~chr14 45267133 45066216 16 -- 2.339372 11 4 7 11 4 TCGA-LI-A9QH-01A-11R-A37L-07 Nchr14~90085372~FOXN3 intergenic "-," "FOXN3," chr14~chr14 90085372 89878834 3 -- 1.098612 2 2 0 2 2 TCGA-LI-A9QH-01A-11R-A37L-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 2 ++ 0.693147 2 0 2 2 10 TCGA-LI-A9QH-01A-11R-A37L-07 Nchr18~37115422~Nchr18~36788753 intergenic "-," "-," chr18~chr18 37115422 36788753 3 -- 1.098612 3 3 0 3 6 TCGA-LI-A9QH-01A-11R-A37L-07 Nchr18~37331293~Nchr18~37115579 intergenic "-," "-," chr18~chr18 37331293 37115579 17 -- 2.507026 13 8 5 13 42 TCGA-LI-A9QH-01A-11R-A37L-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151282 6 -- 1.56071 3 0 3 3 10 TCGA-LI-A9QH-01A-11R-A37L-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 13 -- 2.351673 9 2 7 9 10 TCGA-LI-A9QH-01A-11R-A37L-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 4 ++ 0.562335 4 0 4 4 34 TCGA-LI-A9QH-01A-11R-A37L-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 42 -+ 2.728295 37 25 12 37 172 TCGA-LI-A9QH-01A-11R-A37L-07 Nchr1~192708521~UCHL5 intergenic "-," "UCHL5," chr1~chr1 192708521 192998787 2 -- 0.693147 2 1 1 2 6 TCGA-LI-A9QH-01A-11R-A37L-07 Nchr4~138228524~RP11-138I17.1 intergenic "-," "RP11-138I17.1," chr4~chr4 138228524 138010754 21 -- 2.070493 8 0 8 8 32 TCGA-LI-A9QH-01A-11R-A37L-07 Nchr4~138231302~Nchr4~138018961 intergenic "-," "-," chr4~chr4 138231302 138018961 2 -- 0.693147 1 1 0 1 6 TCGA-LI-A9QH-01A-11R-A37L-07 Nchr4~138231302~RP11-138I17.1 intergenic "-," "RP11-138I17.1," chr4~chr4 138231302 138010754 8 -- 1.667462 1 1 0 1 4 TCGA-LI-A9QH-01A-11R-A37L-07 Nchr4~138289855~RP11-138I17.1 intergenic "-," "RP11-138I17.1," chr4~chr4 138289855 138010754 11 -- 2.271869 2 1 1 2 2 TCGA-LI-A9QH-01A-11R-A37L-07 Nchr6~141219325~Nchr6~140972698 intergenic "-," "-," chr6~chr6 141219325 140972698 17 -- 2.115209 11 8 3 11 30 TCGA-LI-A9QH-01A-11R-A37L-07 Nchr7~47195403~AC004901.1 intergenic "-," "AC004901.1," chr7~chr7 47195403 46977095 5 -- 1.332179 5 1 4 5 4 TCGA-LI-A9QH-01A-11R-A37L-07 Nchr9~111072946~Nchr9~110815575 intergenic "-," "-," chr9~chr9 111072946 110815575 2 -- 0.693147 1 0 1 1 4 TCGA-LI-A9QH-01A-11R-A37L-07 OXSR1~PDCD6IP fusion "OXSR1," "PDCD6IP," chr3~chr3 38271226 33870330 2 ++ 0.693147 1 0 1 1 4 TCGA-LI-A9QH-01A-11R-A37L-07 PDZRN3~CACNA2D3 fusion "PDZRN3," "CACNA2D3," chr3~chr3 73651505 54420742 6 -+ 1.56071 2 1 1 2 2 TCGA-LI-A9QH-01A-11R-A37L-07 PLCL2~Nchr3~18029099 intergenic "PLCL2," "-," chr3~chr3 17056403 18029099 3 +- 1.098612 3 1 2 3 6 TCGA-LI-A9QH-01A-11R-A37L-07 RB1~DIAPH3 fusion "RB1," "DIAPH3," chr13~chr13 48881542 60707123 9 +- 1.310784 9 4 5 9 30 TCGA-LI-A9QH-01A-11R-A37L-07 RP11-328J2.1~Nchr7~119140163 intergenic "RP11-328J2.1," "-," chr7~chr7 119353720 119140163 13 -- 2.245035 11 10 1 11 142 TCGA-LI-A9QH-01A-11R-A37L-07 SETD2~CCRL2 fusion "SETD2," "CCRL2," chr3~chr3 47139445 46448880 81 -+ 2.588612 77 25 51 77 206 TCGA-LI-A9QH-01A-11R-A37L-07 SETD2~CCRL2 fusion "SETD2," "CCRL2," chr3~chr3 47139445 46449559 8 -+ 1.559581 8 5 3 8 62 TCGA-LI-A9QH-01A-11R-A37L-07 SPEN~PLEKHM2 fusion "SPEN," "PLEKHM2," chr1~chr1 16203173 16060292 48 ++ 3.051781 47 13 33 47 110 TCGA-LI-A9QH-01A-11R-A37L-07 SSBP4~Nchr18~12067469 intergenic "SSBP4," "-," chr19~chr18 18543693 12067469 2 ++ 0.693147 2 2 0 2 8 TCGA-LI-A9QH-01A-11R-A37L-07 SUPT5H~Nchr9~7702253 intergenic "SUPT5H," "-," chr19~chr9 39944161 7702253 4 ++ 1.386294 4 1 3 4 10 TCGA-LI-A9QH-01A-11R-A37L-07 SUPT5H~Nchr9~7722004 intergenic "SUPT5H," "-," chr19~chr9 39944161 7722004 23 ++ 2.487896 19 7 10 19 56 TCGA-LI-A9QH-01A-11R-A37L-07 TIPIN~ATP8B4 fusion "TIPIN," "ATP8B4," chr15~chr15 66648977 50226379 4 -- 1.386294 4 4 0 4 6 TCGA-LI-A9QH-01A-11R-A37L-07 TRIP4~Nchr5~12654759 intergenic "TRIP4," "-," chr15~chr5 64717830 12654759 3 ++ 0.636514 3 2 1 3 4 TCGA-LI-A9QH-01A-11R-A37L-07 USF2~Nchr18~71067743 intergenic "USF2," "-," chr19~chr18 35762044 71067743 3 +- 1.098612 3 2 1 3 14 TCGA-LI-A9QH-01A-11R-A37L-07 USF2~Nchr18~71069481 intergenic "USF2," "-," chr19~chr18 35762044 71069481 3 +- 1.098612 3 1 2 3 44 TCGA-LI-A9QH-01A-11R-A37L-07 USF2~Nchr18~71069489 intergenic "USF2," "-," chr19~chr18 35762044 71069489 20 +- 2.293413 20 9 11 20 58 TCGA-LI-A9QH-01A-11R-A37L-07 USF2~Nchr18~71069679 intergenic "USF2," "-," chr19~chr18 35762044 71069679 8 +- 1.732868 8 4 4 8 48 TCGA-LI-A9QH-01A-11R-A37L-07 UVRAG~ACER3 fusion "UVRAG," "ACER3," chr11~chr11 75728024 76726060 4 ++ 1.386294 4 2 2 4 8 TCGA-LI-A9QH-01A-11R-A37L-07 ZNF507~FXYD1 fusion "ZNF507," "FXYD1," chr19~chr19 32851524 35630980 18 ++ 2.120208 17 6 11 17 46 TCGA-LI-A9QH-01A-11R-A37L-07 ZNF507~FXYD1 fusion "ZNF507," "FXYD1," chr19~chr19 32851524 35631501 2 ++ 0.693147 2 0 2 2 18 TCGA-DX-A8BT-01A-11R-A37L-07 ADAM12~Nchr10~127142294 intergenic "ADAM12," "-," chr10~chr10 128018981 127142294 20 -- 2.415052 19 14 5 19 38 TCGA-DX-A8BT-01A-11R-A37L-07 BCCIP~Nchr15~74211167 intergenic "BCCIP," "-," chr10~chr15 127522515 74211167 6 ++ 1.329661 6 5 1 6 22 TCGA-DX-A8BT-01A-11R-A37L-07 CENPI~LANCL3 fusion "CENPI," "LANCL3," chrX~chrX 100403150 37514941 11 ++ 2.145842 10 7 3 10 32 TCGA-DX-A8BT-01A-11R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267040 94052269 2 -+ 0.693147 1 1 0 1 14 TCGA-DX-A8BT-01A-11R-A37L-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870985 48265998 2 +- 0.693147 2 1 1 2 6 TCGA-DX-A8BT-01A-11R-A37L-07 DLGAP1~Nchr14~66584657 intergenic "DLGAP1," "-," chr18~chr14 4151180 66584657 12 -- 2.094729 5 3 2 5 20 TCGA-DX-A8BT-01A-11R-A37L-07 DOCK1~STK32C fusion "DOCK1," "STK32C," chr10~chr10 128594121 134059459 2 +- 0.693147 1 1 0 1 106 TCGA-DX-A8BT-01A-11R-A37L-07 DOCK1~STK32C fusion "DOCK1," "STK32C," chr10~chr10 128594132 134059459 54 +- 2.92239 52 22 30 52 150 TCGA-DX-A8BT-01A-11R-A37L-07 GAPDH~NchrX~39647069 intergenic "GAPDH," "-," chr12~chrX 6646369 39647069 5 -- 1.332179 1 0 1 1 32 TCGA-DX-A8BT-01A-11R-A37L-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 74 -- 2.089568 74 74 0 74 60 TCGA-DX-A8BT-01A-11R-A37L-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 91 -- 1.948535 90 0 90 90 66 TCGA-DX-A8BT-01A-11R-A37L-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 263 -- 2.606912 159 36 123 159 2 TCGA-DX-A8BT-01A-11R-A37L-07 IDH3A~DHX32 fusion "IDH3A," "DHX32," chr15~chr10 78452548 127526956 9 +- 2.043192 8 4 4 8 14 TCGA-DX-A8BT-01A-11R-A37L-07 IGLV1-51~IGLJ3 fusion "IGLV1-51," "IGLJ3," chr22~chr22 22677320 23247166 3 ++ 1.098612 3 1 2 3 62 TCGA-DX-A8BT-01A-11R-A37L-07 KLHDC1~Nchr18~27716808 intergenic "KLHDC1," "-," chr14~chr18 50192487 27716808 10 ++ 1.886697 7 3 4 7 8 TCGA-DX-A8BT-01A-11R-A37L-07 NOP56~Nchr12~79952582 intergenic "NOP56,NOP56," "-," chr20~chr12 2637857 79952582 8 ++ 1.906155 5 3 2 5 6 TCGA-DX-A8BT-01A-11R-A37L-07 Nchr11~66080111~Nchr11~66080242 intergenic "-," "-," chr11~chr11 66080111 66080242 3 -- 1.098612 3 1 2 3 2 TCGA-DX-A8BT-01A-11R-A37L-07 Nchr12~33996373~Nchr12~33777555 intergenic "-," "-," chr12~chr12 33996373 33777555 2 -- 0.693147 2 2 0 2 14 TCGA-DX-A8BT-01A-11R-A37L-07 Nchr12~33996373~Nchr12~33778847 intergenic "-," "-," chr12~chr12 33996373 33778847 2 -- 0.693147 2 1 1 2 16 TCGA-DX-A8BT-01A-11R-A37L-07 Nchr14~106444660~Nchr14~106444858 intergenic "-," "-," chr14~chr14 106444660 106444858 3 -- 1.098612 2 0 2 2 2 TCGA-DX-A8BT-01A-11R-A37L-07 Nchr14~28125544~Nchr14~27791347 intergenic "-," "-," chr14~chr14 28125544 27791347 2 -- 0.693147 2 1 1 2 2 TCGA-DX-A8BT-01A-11R-A37L-07 Nchr15~74249570~ETFA intergenic "-," "ETFA," chr15~chr15 74249570 76523739 2 +- 0.693147 2 2 0 2 4 TCGA-DX-A8BT-01A-11R-A37L-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151282 6 -- 1.56071 5 1 4 5 14 TCGA-DX-A8BT-01A-11R-A37L-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 14 -- 2.242973 9 2 7 9 14 TCGA-DX-A8BT-01A-11R-A37L-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 90 -+ 3.1187 89 55 31 89 244 TCGA-DX-A8BT-01A-11R-A37L-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145013721 5 -+ 1.609438 2 0 2 2 2 TCGA-DX-A8BT-01A-11R-A37L-07 Nchr1~171639784~Nchr1~171639676 intergenic "-," "-," chr1~chr1 171639784 171639676 5 ++ 1.332179 2 0 2 2 2 TCGA-DX-A8BT-01A-11R-A37L-07 Nchr2~84318969~Nchr2~84110674 intergenic "-," "-," chr2~chr2 84318969 84110674 3 -- 0.636514 3 3 0 3 10 TCGA-DX-A8BT-01A-11R-A37L-07 Nchr5~73278463~Nchr5~73520687 intergenic "-," "-," chr5~chr5 73278463 73520687 2 ++ 0.693147 2 0 2 2 4 TCGA-DX-A8BT-01A-11R-A37L-07 Nchr6~117366665~GPRC6A intergenic "-," "GPRC6A," chr6~chr6 117366665 117150119 7 -- 1.747868 5 3 2 5 8 TCGA-DX-A8BT-01A-11R-A37L-07 Nchr6~151546858~RPS12 intergenic "-," "RPS12," chr6~chr6 151546858 133138121 4 ++ 1.039721 3 0 3 3 234 TCGA-DX-A8BT-01A-11R-A37L-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 14 ++ 1.673118 13 13 0 13 10 TCGA-DX-A8BT-01A-11R-A37L-07 Nchr6~164946106~Nchr6~165177623 intergenic "-," "-," chr6~chr6 164946106 165177623 4 ++ 1.386294 4 2 2 4 14 TCGA-DX-A8BT-01A-11R-A37L-07 Nchr6~164946106~Nchr6~165208112 intergenic "-," "-," chr6~chr6 164946106 165208112 4 ++ 1.039721 4 0 4 4 18 TCGA-DX-A8BT-01A-11R-A37L-07 Nchr6~24976664~Nchr6~24976861 intergenic "-," "-," chr6~chr6 24976664 24976861 2 -- 0.693147 2 2 0 2 2 TCGA-DX-A8BT-01A-11R-A37L-07 Nchr7~110514869~IMMP2L intergenic "-," "IMMP2L," chr7~chr7 110514869 110303777 2 -- 0.693147 2 2 0 2 10 TCGA-DX-A8BT-01A-11R-A37L-07 Nchr7~122851462~Nchr7~123096679 intergenic "-," "-," chr7~chr7 122851462 123096679 2 ++ 0.693147 2 0 2 2 20 TCGA-DX-A8BT-01A-11R-A37L-07 Nchr7~122851497~Nchr7~123096679 intergenic "-," "-," chr7~chr7 122851497 123096679 18 ++ 1.979596 18 5 13 18 94 TCGA-DX-A8BT-01A-11R-A37L-07 Nchr7~122858538~Nchr7~123096679 intergenic "-," "-," chr7~chr7 122858538 123096679 10 ++ 1.748067 9 0 9 9 84 TCGA-DX-A8BT-01A-11R-A37L-07 Nchr7~123730539~Nchr7~123730566 intergenic "-," "-," chr7~chr7 123730539 123730566 2 -- 0.693147 2 2 0 2 2 TCGA-DX-A8BT-01A-11R-A37L-07 Nchr7~93976167~SGCE intergenic "-," "SGCE," chr7~chr7 93976167 94246640 3 +- 1.098612 2 2 0 2 6 TCGA-DX-A8BT-01A-11R-A37L-07 RAB12~Nchr18~18760089 intergenic "RAB12," "-," chr18~chr18 8609951 18760089 25 +- 2.435213 22 4 18 22 36 TCGA-DX-A8BT-01A-11R-A37L-07 RP11-328J2.1~Nchr7~119140163 intergenic "RP11-328J2.1," "-," chr7~chr7 119353720 119140163 58 -- 2.494962 57 53 4 57 596 TCGA-DX-A8BT-01A-11R-A37L-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 4 ++ 0.693147 3 1 2 3 6 TCGA-DX-A8BT-01A-11R-A37L-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 11 +- 1.036199 10 0 10 10 2 TCGA-DX-A8BT-01A-11R-A37L-07 SLC25A13~Nchr7~93936961 intergenic "SLC25A13," "-," chr7~chr7 95926210 93936961 5 -- 1.332179 4 1 3 4 38 TCGA-DX-A8BT-01A-11R-A37L-07 TARSL2~Nchr10~127125660 intergenic "TARSL2," "-," chr15~chr10 102241289 127125660 8 -+ 1.732868 8 0 8 8 12 TCGA-DX-A8BT-01A-11R-A37L-07 TARSL2~Nchr10~127125660 intergenic "TARSL2," "-," chr15~chr10 102239534 127125660 2 -+ 0.693147 2 0 2 2 12 TCGA-DX-A8BT-01A-11R-A37L-07 TARSL2~Nchr10~127126070 intergenic "TARSL2," "-," chr15~chr10 102241289 127126070 7 -+ 1.549826 7 0 7 7 4 TCGA-DX-A8BT-01A-11R-A37L-07 TP53~PFKL fusion "WRAP53,TP53," "PFKL," chr17~chr21 7590695 45726564 20 -+ 2.527519 15 8 7 15 24 TCGA-DX-A8BT-01A-11R-A37L-07 WHSC1~FBN1 fusion "WHSC1," "FBN1," chr4~chr15 1902978 48714265 2 +- 0.693147 2 1 1 2 12 TCGA-DX-A8BT-01A-11R-A37L-07 WHSC1~FBN1 fusion "WHSC1," "FBN1," chr4~chr15 1906105 48714265 21 +- 2.529295 13 13 0 13 2 TCGA-DX-A8BT-01A-11R-A37L-07 WNT9A~RP11-309H21.2 fusion "WNT9A," "RP11-309H21.2," chr1~chr1 228135494 191194751 8 -+ 1.906155 8 8 0 8 6 TCGA-DX-A8BQ-01A-11R-A37L-07 FBN1~Nchr8~79027179 intergenic "FBN1," "-," chr15~chr8 48936803 79027179 5 -- 1.609438 5 3 2 5 8 TCGA-DX-A8BQ-01A-11R-A37L-07 FBN1~Nchr8~79081296 intergenic "FBN1," "-," chr15~chr8 48936803 79081296 6 -- 1.56071 5 2 3 5 30 TCGA-DX-A8BQ-01A-11R-A37L-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 252 -- 2.352888 253 249 3 253 232 TCGA-DX-A8BQ-01A-11R-A37L-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32487274 32549523 3 -- 1.098612 2 0 2 2 48 TCGA-DX-A8BQ-01A-11R-A37L-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 2346 -- 2.481298 2123 697 1412 2123 504 TCGA-DX-A8BQ-01A-11R-A37L-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32497902 32552155 68 -- 2.652766 19 6 12 19 156 TCGA-DX-A8BQ-01A-11R-A37L-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 32 -+ 2.270896 15 0 15 15 16 TCGA-DX-A8BQ-01A-11R-A37L-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 17 -+ 2.557794 17 7 10 17 94 TCGA-DX-A8BQ-01A-11R-A37L-07 SMURF2~MYST1 fusion "SMURF2," "MYST1," chr17~chr16 62589558 31128383 21 -+ 2.715956 23 14 6 23 50 TCGA-DX-A8BQ-01A-11R-A37L-07 SMURF2~MYST1 fusion "SMURF2," "MYST1," chr17~chr16 62589558 31128784 91 -+ 2.963917 81 45 36 81 292 TCGA-DX-A8BS-01A-11R-A37L-07 AHDC1~Nchr7~20369136 intergenic "AHDC1," "-," chr1~chr7 27885217 20369136 3 -- 1.098612 3 3 0 3 4 TCGA-DX-A8BS-01A-11R-A37L-07 ANKH~Nchr5~17090417 intergenic "ANKH," "-," chr5~chr5 14871461 17090417 2 -- 0.693147 2 2 0 2 2 TCGA-DX-A8BS-01A-11R-A37L-07 ANKH~Nchr5~17117595 intergenic "ANKH," "-," chr5~chr5 14871461 17117595 5 -- 1.609438 5 3 2 5 22 TCGA-DX-A8BS-01A-11R-A37L-07 C11orf9~STX5 fusion "C11orf9," "STX5," chr11~chr11 61520262 62575100 10 +- 2.302585 10 2 8 10 20 TCGA-DX-A8BS-01A-11R-A37L-07 CBFA2T2~BCL2L1 fusion "CBFA2T2," "BCL2L1," chr20~chr20 32078107 30253889 18 +- 2.476221 15 15 0 15 16 TCGA-DX-A8BS-01A-11R-A37L-07 CBFA2T2~Nchr20~30254950 intergenic "CBFA2T2," "-," chr20~chr20 32078107 30254950 10 +- 1.695743 9 9 0 9 20 TCGA-DX-A8BS-01A-11R-A37L-07 CCNY~Nchr13~27478780 intergenic "CCNY," "-," chr10~chr13 35626135 27478780 2 ++ 0.693147 2 1 1 2 6 TCGA-DX-A8BS-01A-11R-A37L-07 CCNY~Nchr13~27520783 intergenic "CCNY," "-," chr10~chr13 35626135 27520783 3 ++ 1.098612 3 1 2 3 10 TCGA-DX-A8BS-01A-11R-A37L-07 CCNY~Nchr13~27539907 intergenic "CCNY," "-," chr10~chr13 35626135 27539907 11 ++ 2.271869 11 2 9 11 34 TCGA-DX-A8BS-01A-11R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48265953 94038119 3 -+ 1.098612 1 1 0 1 2 TCGA-DX-A8BS-01A-11R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266281 94056339 3 -+ 0.636514 3 2 1 3 6 TCGA-DX-A8BS-01A-11R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268840 189862992 3 -+ 0.636514 3 2 1 3 2 TCGA-DX-A8BS-01A-11R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268836 189862999 5 -+ 1.332179 4 1 3 4 2 TCGA-DX-A8BS-01A-11R-A37L-07 DLG1~CBFA2T2 fusion "DLG1," "CBFA2T2," chr3~chr20 197009550 32232153 33 -+ 2.860815 32 8 24 32 58 TCGA-DX-A8BS-01A-11R-A37L-07 FAM91A1~Nchr9~35563921 intergenic "FAM91A1," "-," chr8~chr9 124781014 35563921 3 +- 1.098612 3 1 2 3 8 TCGA-DX-A8BS-01A-11R-A37L-07 HLA-B~Nchr6~29902006 intergenic "HLA-B," "-," chr6~chr6 31323352 29902006 2 ++ 0.693147 1 1 0 1 62 TCGA-DX-A8BS-01A-11R-A37L-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 235 -- 2.001364 234 7 226 234 36 TCGA-DX-A8BS-01A-11R-A37L-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 835 -- 2.624456 606 189 411 606 6 TCGA-DX-A8BS-01A-11R-A37L-07 KDM4A~RP1-159A19.4 fusion "KDM4A," "RP1-159A19.4," chr1~chr1 44126083 27856797 4 ++ 1.386294 3 0 3 3 14 TCGA-DX-A8BS-01A-11R-A37L-07 LPP~AC073135.3 fusion "LPP," "AC073135.3," chr3~chr3 187871809 197837155 6 ++ 1.56071 6 2 4 6 12 TCGA-DX-A8BS-01A-11R-A37L-07 LPP~AC073135.3 fusion "LPP," "AC073135.3," chr3~chr3 187943315 197837155 23 ++ 2.196393 20 10 10 20 22 TCGA-DX-A8BS-01A-11R-A37L-07 Nchr11~127905483~Nchr1~249229631 intergenic "-," "-," chr11~chr1 127905483 249229631 5 +- 1.609438 3 1 2 3 8 TCGA-DX-A8BS-01A-11R-A37L-07 Nchr11~47213097~RPS20 intergenic "-," "RPS20," chr11~chr8 47213097 56986962 2 +- 0.693147 1 0 1 1 10 TCGA-DX-A8BS-01A-11R-A37L-07 Nchr11~5383946~RP11-467L20.9 intergenic "-," "C11orf10,RP11-467L20.9," chr11~chr11 5383946 61558045 2 -- 0.693147 2 0 2 2 2 TCGA-DX-A8BS-01A-11R-A37L-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 168 -+ 2.676605 77 0 77 77 126 TCGA-DX-A8BS-01A-11R-A37L-07 Nchr14~106772476~Nchr14~106488489 intergenic "-," "-," chr14~chr14 106772476 106488489 4 ++ 1.039721 4 0 4 4 14 TCGA-DX-A8BS-01A-11R-A37L-07 Nchr14~58448631~SLC35F4 intergenic "-," "SLC35F4," chr14~chr14 58448631 58060842 9 -- 1.889159 8 4 4 8 20 TCGA-DX-A8BS-01A-11R-A37L-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 2 ++ 0.693147 1 0 1 1 8 TCGA-DX-A8BS-01A-11R-A37L-07 Nchr17~14608784~Nchr17~14608880 intergenic "-," "-," chr17~chr17 14608784 14608880 5 -- 1.332179 2 0 2 2 8 TCGA-DX-A8BS-01A-11R-A37L-07 Nchr1~87923337~PRKAG2 intergenic "-," "PRKAG2," chr1~chr7 87923337 151367760 14 -- 2.242973 11 1 10 11 34 TCGA-DX-A8BS-01A-11R-A37L-07 Nchr1~8953662~HMGN2 intergenic "-," "HMGN2," chr1~chr1 8953662 26800618 2 -- 0.693147 2 0 2 2 2 TCGA-DX-A8BS-01A-11R-A37L-07 Nchr1~98523354~Nchr1~98736151 intergenic "-," "-," chr1~chr1 98523354 98736151 2 ++ 0.693147 2 1 1 2 2 TCGA-DX-A8BS-01A-11R-A37L-07 Nchr3~18105864~Nchr3~18306537 intergenic "-," "-," chr3~chr3 18105864 18306537 4 ++ 1.386294 3 0 3 3 36 TCGA-DX-A8BS-01A-11R-A37L-07 Nchr3~18105864~Nchr3~18327234 intergenic "-," "-," chr3~chr3 18105864 18327234 2 ++ 0.693147 2 0 2 2 10 TCGA-DX-A8BS-01A-11R-A37L-07 Nchr3~18105864~Nchr3~18351731 intergenic "-," "-," chr3~chr3 18105864 18351731 7 ++ 1.747868 6 0 6 6 68 TCGA-DX-A8BS-01A-11R-A37L-07 Nchr3~18106818~Nchr3~18308510 intergenic "-," "-," chr3~chr3 18106818 18308510 2 ++ 0.693147 2 0 2 2 2 TCGA-DX-A8BS-01A-11R-A37L-07 Nchr3~18106818~Nchr3~18351731 intergenic "-," "-," chr3~chr3 18106818 18351731 3 ++ 1.098612 3 0 3 3 2 TCGA-DX-A8BS-01A-11R-A37L-07 Nchr3~18113708~Nchr3~18351731 intergenic "-," "-," chr3~chr3 18113708 18351731 2 ++ 0.693147 2 0 2 2 46 TCGA-DX-A8BS-01A-11R-A37L-07 NchrX~13173470~NchrX~13269093 intergenic "-," "-," chrX~chrX 13173470 13269093 2 -- 0.693147 1 1 0 1 4 TCGA-DX-A8BS-01A-11R-A37L-07 RECK~Nchr9~35962645 intergenic "RECK," "-," chr9~chr9 36060152 35962645 7 ++ 1.747868 7 1 6 7 8 TCGA-DX-A8BS-01A-11R-A37L-07 RUNX1T1~Nchr9~35566595 intergenic "RUNX1T1," "-," chr8~chr9 92988133 35566595 7 -+ 1.747868 7 6 1 7 12 TCGA-DX-A8BS-01A-11R-A37L-07 RUNX1T1~Nchr9~35597281 intergenic "RUNX1T1," "-," chr8~chr9 92988133 35597281 10 -+ 1.748067 9 3 6 9 68 TCGA-DX-A8BS-01A-11R-A37L-07 RUNX1T1~Nchr9~35599618 intergenic "RUNX1T1," "-," chr8~chr9 92988133 35599618 2 -+ 0.693147 2 1 1 2 10 TCGA-DX-A8BS-01A-11R-A37L-07 SLC25A25~ADAMTSL3 fusion "SLC25A25," "ADAMTSL3," chr9~chr15 130830859 84690162 4 ++ 1.386294 4 3 1 4 6 TCGA-DX-A8BS-01A-11R-A37L-07 SUPT16H~BRMS1 fusion "SUPT16H," "BRMS1," chr14~chr11 21852021 66105360 2 -- 0.693147 2 2 0 2 12 TCGA-DX-A8BS-01A-11R-A37L-07 TRPM7~CDH8 fusion "TRPM7," "CDH8," chr15~chr16 50955164 62015875 4 -- 1.386294 3 1 2 3 4 TCGA-DX-A8BS-01A-11R-A37L-07 TRPM7~CDH8 fusion "TRPM7," "CDH8," chr15~chr16 50955164 62023552 2 -- 0.693147 2 1 1 2 34 TCGA-DX-A8BS-01A-11R-A37L-07 TRPM7~CDH8 fusion "TRPM7," "CDH8," chr15~chr16 50955164 62023609 10 -- 2.025326 10 4 6 10 56 TCGA-DX-A8BS-01A-11R-A37L-07 TRPM7~TEPP fusion "TRPM7," "TEPP," chr15~chr16 50978728 58018207 5 -+ 1.332179 5 1 4 5 8 TCGA-DX-A8BS-01A-11R-A37L-07 TRPM7~TEPP fusion "TRPM7," "TEPP," chr15~chr16 50955164 58018207 13 -+ 2.098147 12 7 5 12 34 TCGA-DX-A8BS-01A-11R-A37L-07 WDFY2~Nchr13~27322705 intergenic "WDFY2," "-," chr13~chr13 52158960 27322705 6 +- 1.56071 6 5 1 6 12 TCGA-DX-A8BS-01A-11R-A37L-07 WDR90~ESYT3 fusion "WDR90," "ESYT3," chr16~chr3 712331 138195065 2 ++ 0.693147 2 1 1 2 6 TCGA-DX-A8BP-01A-11R-A37L-07 AC007092.1~IK fusion "AC007092.1," "IK," chr2~chr5 58687601 140041559 2 ++ 0.693147 2 2 0 2 6 TCGA-DX-A8BP-01A-11R-A37L-07 ASAP2~ITGB1BP1 fusion "ASAP2," "ITGB1BP1," chr2~chr2 9437574 9554385 3 +- 1.098612 3 0 3 3 18 TCGA-DX-A8BP-01A-11R-A37L-07 ASAP2~ITGB1BP1 fusion "ASAP2," "ITGB1BP1," chr2~chr2 9437574 9558861 3 +- 0.636514 3 1 2 3 24 TCGA-DX-A8BP-01A-11R-A37L-07 CACYBP~Nchr2~184472861 intergenic "CACYBP," "-," chr1~chr2 174973792 184472861 2 -- 0.693147 2 2 0 2 6 TCGA-DX-A8BP-01A-11R-A37L-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31237743 31322471 6 -- 1.242453 4 1 3 4 4 TCGA-DX-A8BP-01A-11R-A37L-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 346 -- 2.419495 347 346 0 347 96 TCGA-DX-A8BP-01A-11R-A37L-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 753 -- 2.448076 366 48 318 366 4 TCGA-DX-A8BP-01A-11R-A37L-07 HN1~Nchr2~174296244 intergenic "HN1," "-," chr17~chr2 73143651 174296244 47 -- 1.146212 31 31 0 31 4 TCGA-DX-A8BP-01A-11R-A37L-07 Nchr11~47213097~RPS20 intergenic "-," "RPS20," chr11~chr8 47213097 56986962 4 +- 1.386294 4 0 4 4 22 TCGA-DX-A8BP-01A-11R-A37L-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 90 -+ 2.671339 51 0 51 51 86 TCGA-DX-A8BP-01A-11R-A37L-07 Nchr15~51329878~CYP19A1 intergenic "-," "CYP19A1," chr15~chr15 51329878 51570180 5 ++ 1.609438 5 2 3 5 4 TCGA-DX-A8BP-01A-11R-A37L-07 Nchr15~93435244~Nchr15~93429399 intergenic "-," "-," chr15~chr15 93435244 93429399 2 -+ 0.693147 1 1 0 1 8 TCGA-DX-A8BP-01A-11R-A37L-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 2 ++ 0.693147 2 1 1 2 68 TCGA-DX-A8BP-01A-11R-A37L-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 58 -+ 2.851792 56 35 21 56 260 TCGA-DX-A8BP-01A-11R-A37L-07 Nchr1~144543834~Nchr1~149204451 intergenic "-," "-," chr1~chr1 144543834 149204451 4 -+ 1.039721 3 1 2 3 6 TCGA-DX-A8BP-01A-11R-A37L-07 Nchr1~147775634~RP11-495P10.6 intergenic "-," "RP11-495P10.6," chr1~chr1 147775634 147745213 3 +- 1.098612 3 0 3 3 14 TCGA-DX-A8BP-01A-11R-A37L-07 Nchr1~147775662~RP11-495P10.6 intergenic "-," "RP11-495P10.6," chr1~chr1 147775662 147745213 4 +- 1.039721 4 3 1 4 18 TCGA-DX-A8BP-01A-11R-A37L-07 Nchr1~171639784~Nchr1~171639676 intergenic "-," "-," chr1~chr1 171639784 171639676 5 ++ 1.332179 4 1 3 4 2 TCGA-DX-A8BP-01A-11R-A37L-07 Nchr2~177065785~Nchr2~177065913 intergenic "-," "-," chr2~chr2 177065785 177065913 2 -- 0.693147 2 0 2 2 4 TCGA-DX-A8BP-01A-11R-A37L-07 Nchr2~177065789~Nchr2~177065913 intergenic "-," "-," chr2~chr2 177065789 177065913 4 -- 1.039721 4 0 4 4 4 TCGA-DX-A8BP-01A-11R-A37L-07 Nchr2~81775871~Nchr2~82049394 intergenic "-," "-," chr2~chr2 81775871 82049394 2 ++ 0.693147 2 1 1 2 16 TCGA-DX-A8BP-01A-11R-A37L-07 Nchr2~81775871~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81775871 82075877 8 ++ 1.906155 6 4 2 6 12 TCGA-DX-A8BP-01A-11R-A37L-07 Nchr2~9705839~CPSF3 intergenic "-," "CPSF3," chr2~chr2 9705839 9572882 8 +- 1.732868 7 6 1 7 6 TCGA-DX-A8BP-01A-11R-A37L-07 Nchr2~9708855~CPSF3 intergenic "-," "CPSF3," chr2~chr2 9708855 9572882 13 +- 1.991509 13 6 7 13 70 TCGA-DX-A8BP-01A-11R-A37L-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 12 ++ 2.138333 10 10 0 10 4 TCGA-DX-A8BP-01A-11R-A37L-07 RP1-34H18.1~RP11-781A6.1 fusion "RP1-34H18.1," "RP11-781A6.1," chr12~chr12 77966046 78177043 4 ++ 1.386294 4 2 2 4 12 TCGA-DX-A8BP-01A-11R-A37L-07 RP11-386G11.10~TUBA1C fusion "RP11-386G11.10,TUBA1B,TUBA1B,RP11-386G11.10," "TUBA1C,RP11-161H23.5," chr12~chr12 49521993 49666750 3 -- 1.098612 1 1 0 1 42 TCGA-DX-A8BP-01A-11R-A37L-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 11 +- 1.594167 10 0 10 10 2 TCGA-DX-A8BP-01A-11R-A37L-07 VHL~Nchr3~10195026 intergenic "VHL," "-," chr3~chr3 10192666 10195026 2 -- 1.098612 3 0 2 3 2 TCGA-SI-A71O-06A-11R-A38C-07 AE000659.4~AE000661.28 fusion "AE000659.4," "AE000661.28,TRAC," chr14~chr14 22447180 23016447 4 ++ 1.386294 4 4 0 4 4 TCGA-SI-A71O-06A-11R-A38C-07 ARHGEF7~SPATA7 fusion "ARHGEF7," "SPATA7," chr13~chr14 111940790 88883055 11 ++ 1.972247 11 7 4 11 14 TCGA-SI-A71O-06A-11R-A38C-07 AUTS2~Nchr7~67109513 intergenic "AUTS2," "-," chr7~chr7 69364484 67109513 7 ++ 1.94591 7 5 2 7 10 TCGA-SI-A71O-06A-11R-A38C-07 CACNA1A~PCCA fusion "CACNA1A," "PCCA," chr19~chr13 13616781 101167681 10 -+ 2.271869 10 5 4 10 50 TCGA-SI-A71O-06A-11R-A38C-07 CACNA1A~PCCA fusion "CACNA1A," "PCCA," chr19~chr13 13613151 101167681 4 -+ 1.386294 4 3 1 4 20 TCGA-SI-A71O-06A-11R-A38C-07 CACNA1A~PCCA fusion "CACNA1A," "PCCA," chr19~chr13 13616781 101179929 16 -+ 2.393312 15 6 9 15 24 TCGA-SI-A71O-06A-11R-A38C-07 COL1A1~Nchr4~43649029 intergenic "COL1A1," "-," chr17~chr4 48271304 43649029 12 -+ 1.979205 12 2 10 12 22 TCGA-SI-A71O-06A-11R-A38C-07 COL1A1~Nchr4~43652572 intergenic "COL1A1," "-," chr17~chr4 48271304 43652572 6 -+ 1.791759 6 2 4 6 30 TCGA-SI-A71O-06A-11R-A38C-07 COL5A1~Nchr9~139587297 intergenic "COL5A1," "-," chr9~chr9 137690307 139587297 110 ++ 3.090833 110 69 38 110 370 TCGA-SI-A71O-06A-11R-A38C-07 DNM2~ARHGEF7 fusion "DNM2," "ARHGEF7," chr19~chr13 10930765 111953095 22 ++ 2.523922 22 10 12 22 32 TCGA-SI-A71O-06A-11R-A38C-07 FAM48A~ATP8A2 fusion "FAM48A," "ATP8A2," chr13~chr13 37633696 26343184 16 -+ 2.479956 14 13 1 14 68 TCGA-SI-A71O-06A-11R-A38C-07 FAM48A~ATP8A2 fusion "FAM48A," "ATP8A2," chr13~chr13 37633617 26343184 6 -+ 1.791759 6 4 2 6 90 TCGA-SI-A71O-06A-11R-A38C-07 GMEB1~Nchr1~27975665 intergenic "GMEB1," "-," chr1~chr1 29019557 27975665 2 ++ 0.693147 2 1 1 2 16 TCGA-SI-A71O-06A-11R-A38C-07 GOLGA5~Nchr14~70723550 intergenic "GOLGA5," "-," chr14~chr14 93260801 70723550 3 +- 1.098612 3 2 1 3 12 TCGA-SI-A71O-06A-11R-A38C-07 HBG2~HBE1 fusion "HBG2,AC104389.28," "HBE1," chr11~chr11 5526581 5291386 13 -- 2.458311 12 6 6 12 48 TCGA-SI-A71O-06A-11R-A38C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 124 -- 2.181548 124 124 0 124 82 TCGA-SI-A71O-06A-11R-A38C-07 IGHJ4~AL928742.12 fusion "IGHJ4," "IGHE,AL928742.12,RP11-731F5.1," chr14~chr14 106330425 106068064 59 -- 2.80281 36 36 0 36 12 TCGA-SI-A71O-06A-11R-A38C-07 IGLV5-45~IGLJ3 fusion "IGLV5-45," "IGLJ3," chr22~chr22 22730868 23247166 120 ++ 3.10456 114 44 69 114 246 TCGA-SI-A71O-06A-11R-A38C-07 IGLV7-43~IGLJ2 fusion "IGLV7-43," "IGLJ2," chr22~chr22 22749821 23241796 4 ++ 1.039721 4 1 3 4 24 TCGA-SI-A71O-06A-11R-A38C-07 KDM2A~Nchr22~32662339 intergenic "KDM2A," "-," chr11~chr22 66947688 32662339 4 +- 1.386294 3 3 0 3 24 TCGA-SI-A71O-06A-11R-A38C-07 KDM2A~Nchr22~32662339 intergenic "KDM2A," "-," chr11~chr22 66948869 32662339 24 +- 2.636391 24 12 12 24 50 TCGA-SI-A71O-06A-11R-A38C-07 LSAMP~Nchr3~116018482 intergenic "LSAMP," "-," chr3~chr3 115726132 116018482 5 ++ 1.332179 4 0 4 4 2 TCGA-SI-A71O-06A-11R-A38C-07 MRPS23~FAM117A fusion "MRPS23," "FAM117A," chr17~chr17 55926601 47810082 11 -- 2.019815 10 2 8 10 26 TCGA-SI-A71O-06A-11R-A38C-07 MYH8~Nchr17~10511671 intergenic "MYH8," "-," chr17~chr17 10309555 10511671 4 ++ 1.386294 3 1 2 3 4 TCGA-SI-A71O-06A-11R-A38C-07 MYST2~F10 fusion "MYST2," "F10," chr17~chr13 47875920 113792771 15 ++ 2.211069 15 10 5 15 68 TCGA-SI-A71O-06A-11R-A38C-07 NFE2L1~Nchr6~88054323 intergenic "NFE2L1," "-," chr17~chr6 46134864 88054323 9 +- 1.83102 9 7 2 9 82 TCGA-SI-A71O-06A-11R-A38C-07 Nchr10~107729821~Nchr10~107433446 intergenic "-," "-," chr10~chr10 107729821 107433446 6 -- 1.791759 2 2 0 2 16 TCGA-SI-A71O-06A-11R-A38C-07 Nchr11~19619891~NAV2 intergenic "-," "NAV2," chr11~chr11 19619891 19854030 2 ++ 0.693147 2 0 2 2 4 TCGA-SI-A71O-06A-11R-A38C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 99 -+ 2.632591 52 0 52 52 92 TCGA-SI-A71O-06A-11R-A38C-07 Nchr11~89984485~Nchr11~90279922 intergenic "-," "-," chr11~chr11 89984485 90279922 10 ++ 1.886697 3 3 0 3 32 TCGA-SI-A71O-06A-11R-A38C-07 Nchr11~90280063~Nchr11~90578048 intergenic "-," "-," chr11~chr11 90280063 90578048 5 ++ 1.05492 3 3 0 3 8 TCGA-SI-A71O-06A-11R-A38C-07 Nchr12~74544782~Nchr12~74336041 intergenic "-," "-," chr12~chr12 74544782 74336041 5 -- 1.609438 3 2 1 3 8 TCGA-SI-A71O-06A-11R-A38C-07 Nchr13~112047361~F10 intergenic "-," "F10," chr13~chr13 112047361 113787344 14 -- 2.007556 14 10 4 14 18 TCGA-SI-A71O-06A-11R-A38C-07 Nchr14~45066112~Nchr14~44862941 intergenic "-," "-," chr14~chr14 45066112 44862941 5 -- 1.332179 2 1 1 2 8 TCGA-SI-A71O-06A-11R-A38C-07 Nchr16~72779365~WWOX intergenic "-," "WWOX," chr16~chr16 72779365 78420757 18 ++ 2.212257 14 4 10 14 10 TCGA-SI-A71O-06A-11R-A38C-07 Nchr18~71314806~Nchr18~71075957 intergenic "-," "-," chr18~chr18 71314806 71075957 8 -- 1.732868 3 1 2 3 8 TCGA-SI-A71O-06A-11R-A38C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 26 -+ 2.504575 24 12 12 24 514 TCGA-SI-A71O-06A-11R-A38C-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 4 ++ 1.386294 3 3 0 3 10 TCGA-SI-A71O-06A-11R-A38C-07 Nchr2~53560842~Nchr2~53137162 intergenic "-," "-," chr2~chr2 53560842 53137162 3 -- 0.636514 3 3 0 3 6 TCGA-SI-A71O-06A-11R-A38C-07 Nchr3~115510005~LSAMP intergenic "-," "LSAMP," chr3~chr3 115510005 115725983 42 ++ 2.856645 35 14 21 35 64 TCGA-SI-A71O-06A-11R-A38C-07 Nchr3~115510005~LSAMP intergenic "-," "LSAMP," chr3~chr3 115510005 115786776 11 ++ 2.145842 7 3 4 7 40 TCGA-SI-A71O-06A-11R-A38C-07 Nchr3~115510005~Nchr3~115817496 intergenic "-," "-," chr3~chr3 115510005 115817496 6 ++ 1.56071 6 1 5 6 30 TCGA-SI-A71O-06A-11R-A38C-07 Nchr3~115510005~Nchr3~115817651 intergenic "-," "-," chr3~chr3 115510005 115817651 3 ++ 1.098612 3 2 1 3 6 TCGA-SI-A71O-06A-11R-A38C-07 Nchr3~115510005~Nchr3~116018482 intergenic "-," "-," chr3~chr3 115510005 116018482 3 ++ 0.636514 3 1 2 3 8 TCGA-SI-A71O-06A-11R-A38C-07 Nchr3~82251605~Nchr3~82465271 intergenic "-," "-," chr3~chr3 82251605 82465271 2 ++ 0.693147 2 0 2 2 4 TCGA-SI-A71O-06A-11R-A38C-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 3 ++ 1.098612 3 3 0 3 4 TCGA-SI-A71O-06A-11R-A38C-07 Nchr8~55074725~Nchr8~55285761 intergenic "-," "-," chr8~chr8 55074725 55285761 2 ++ 0.693147 2 0 2 2 40 TCGA-SI-A71O-06A-11R-A38C-07 Nchr9~28947816~LINGO2 intergenic "-," "LINGO2," chr9~chr9 28947816 28670278 10 -- 2.025326 3 0 3 3 8 TCGA-SI-A71O-06A-11R-A38C-07 PCNT~AP001475.1 fusion "PCNT," "AP001475.1," chr21~chr21 47773982 47572208 8 ++ 1.906155 8 1 7 8 14 TCGA-SI-A71O-06A-11R-A38C-07 PHF20~NCOA6 fusion "PHF20," "NCOA6," chr20~chr20 34435356 33380366 5 +- 1.332179 5 1 4 5 4 TCGA-SI-A71O-06A-11R-A38C-07 RP1-209A6.1~Nchr6~22745302 intergenic "RP1-209A6.1," "-," chr6~chr6 23175482 22745302 2 -- 0.693147 2 0 2 2 4 TCGA-SI-A71O-06A-11R-A38C-07 RP11-328J2.1~Nchr7~119140163 intergenic "RP11-328J2.1," "-," chr7~chr7 119353720 119140163 2 -- 0.693147 2 2 0 2 10 TCGA-SI-A71O-06A-11R-A38C-07 RP11-554D15.1~Nchr6~75352081 intergenic "RP11-554D15.1," "-," chr6~chr6 75056845 75352081 7 ++ 1.549826 4 0 4 4 10 TCGA-SI-A71O-06A-11R-A38C-07 RP11-634B7.4~TRIM58 fusion "RP11-634B7.4,RP11-978I15.10," "TRIM58," chr1~chr1 247803731 248023919 5 ++ 1.332179 5 3 2 5 22 TCGA-SI-A71O-06A-11R-A38C-07 SDHC~F10 fusion "SDHC," "F10," chr1~chr13 161298287 113783766 5 ++ 1.05492 2 2 0 2 2 TCGA-SI-A71O-06A-11R-A38C-07 SIRPA~Nchr20~53859807 intergenic "SIRPA," "-," chr20~chr20 1918183 53859807 5 ++ 1.332179 5 1 4 5 12 TCGA-SI-A71O-06A-11R-A38C-07 SIRPA~Nchr20~53867407 intergenic "SIRPA," "-," chr20~chr20 1918183 53867407 13 ++ 2.564949 9 6 3 9 16 TCGA-SI-A71O-06A-11R-A38C-07 SPATA7~KTN1 fusion "SPATA7," "KTN1," chr14~chr14 88852181 56078737 16 ++ 2.426015 15 5 10 15 12 TCGA-SI-A71O-06A-11R-A38C-07 USP9Y~ERC1 fusion "USP9Y," "ERC1," chrY~chr12 14851563 1345935 3 ++ 1.098612 3 1 2 3 4 TCGA-SI-A71O-06A-11R-A38C-07 YTHDC1~Nchr12~41076845 intergenic "YTHDC1," "-," chr4~chr12 69199026 41076845 5 -+ 1.05492 5 1 4 5 50 TCGA-SI-A71O-06A-11R-A38C-07 YTHDC1~Nchr12~41076845 intergenic "YTHDC1," "-," chr4~chr12 69202745 41076845 10 -+ 2.025326 9 4 5 9 40 TCGA-SI-A71O-06A-11R-A38C-07 ZMYM2~Nchr13~98411092 intergenic "ZMYM2," "-," chr13~chr13 20611049 98411092 2 +- 0.693147 2 0 2 2 2 TCGA-SI-A71O-06A-11R-A38C-07 ZMYM2~Nchr13~98444575 intergenic "ZMYM2," "-," chr13~chr13 20611049 98444575 22 +- 2.271869 22 12 10 22 70 TCGA-3B-A9HR-01A-11R-A38C-07 ACTA2~Nchr8~40816016 intergenic "ACTA2," "-," chr10~chr8 90703554 40816016 4 -- 1.386294 4 2 2 4 4 TCGA-3B-A9HR-01A-11R-A38C-07 ACTA2~Nchr8~40849657 intergenic "ACTA2," "-," chr10~chr8 90703554 40849657 5 -- 1.609438 4 1 3 4 14 TCGA-3B-A9HR-01A-11R-A38C-07 ACTA2~Nchr8~40865456 intergenic "ACTA2," "-," chr10~chr8 90703554 40865456 40 -- 2.83094 38 19 19 38 100 TCGA-3B-A9HR-01A-11R-A38C-07 ACTA2~Nchr8~40873749 intergenic "ACTA2," "-," chr10~chr8 90703554 40873749 13 -- 1.95126 13 9 4 13 24 TCGA-3B-A9HR-01A-11R-A38C-07 ACTA2~Nchr8~40873762 intergenic "ACTA2," "-," chr10~chr8 90703554 40873762 4 -- 1.039721 4 2 2 4 26 TCGA-3B-A9HR-01A-11R-A38C-07 ACTA2~Nchr8~40879668 intergenic "ACTA2," "-," chr10~chr8 90703554 40879668 9 -- 1.83102 9 4 5 9 4 TCGA-3B-A9HR-01A-11R-A38C-07 ACTA2~Nchr8~40883254 intergenic "ACTA2," "-," chr10~chr8 90703554 40883254 2 -- 0.693147 2 2 0 2 4 TCGA-3B-A9HR-01A-11R-A38C-07 ACTA2~Nchr8~40893576 intergenic "ACTA2," "-," chr10~chr8 90703554 40893576 67 -- 2.96633 69 39 26 69 256 TCGA-3B-A9HR-01A-11R-A38C-07 ACTA2~Nchr8~40931567 intergenic "ACTA2," "-," chr10~chr8 90703554 40931567 13 -- 1.925121 9 6 3 9 50 TCGA-3B-A9HR-01A-11R-A38C-07 ACTA2~Nchr8~40942581 intergenic "ACTA2," "-," chr10~chr8 90703554 40942581 625 -- 2.961656 605 290 315 605 988 TCGA-3B-A9HR-01A-11R-A38C-07 ACTA2~Nchr8~40948540 intergenic "ACTA2," "-," chr10~chr8 90703554 40948540 6 -- 1.56071 5 5 0 5 4 TCGA-3B-A9HR-01A-11R-A38C-07 ACTA2~Nchr8~40948737 intergenic "ACTA2," "-," chr10~chr8 90703554 40948737 10 -- 2.025326 10 5 5 10 946 TCGA-3B-A9HR-01A-11R-A38C-07 ACTA2~Nchr8~40950336 intergenic "ACTA2," "-," chr10~chr8 90703554 40950336 32 -- 2.758843 30 15 14 30 138 TCGA-3B-A9HR-01A-11R-A38C-07 ACTA2~Nchr8~40953164 intergenic "ACTA2," "-," chr10~chr8 90703554 40953164 7 -- 1.747868 6 4 2 6 578 TCGA-3B-A9HR-01A-11R-A38C-07 ACTA2~Nchr8~40953167 intergenic "ACTA2," "-," chr10~chr8 90703554 40953167 259 -- 3.236301 249 149 100 249 638 TCGA-3B-A9HR-01A-11R-A38C-07 ACTA2~Nchr8~40953390 intergenic "ACTA2," "-," chr10~chr8 90703554 40953390 3 -- 1.098612 3 2 1 3 558 TCGA-3B-A9HR-01A-11R-A38C-07 C17orf48~Nchr3~112180757 intergenic "C17orf48," "-," chr17~chr3 10608530 112180757 13 +- 2.311423 12 9 3 12 34 TCGA-3B-A9HR-01A-11R-A38C-07 CPEB4~Nchr5~141689722 intergenic "CPEB4," "-," chr5~chr5 173337607 141689722 6 ++ 1.791759 6 5 1 6 36 TCGA-3B-A9HR-01A-11R-A38C-07 CTC1~Nchr3~125533568 intergenic "CTC1," "-," chr17~chr3 8151322 125533568 13 -- 2.204785 12 0 12 12 4 TCGA-3B-A9HR-01A-11R-A38C-07 CTC1~Nchr3~125546298 intergenic "CTC1," "-," chr17~chr3 8151322 125546298 84 -- 3.116213 82 0 82 82 8 TCGA-3B-A9HR-01A-11R-A38C-07 CTC1~Nchr3~125567290 intergenic "CTC1," "-," chr17~chr3 8151322 125567290 93 -- 2.790307 87 0 87 87 20 TCGA-3B-A9HR-01A-11R-A38C-07 FNDC3A~LPAR6 fusion "FNDC3A," "LPAR6," chr13~chr13 49688867 48963948 14 +- 2.304619 14 5 9 14 88 TCGA-3B-A9HR-01A-11R-A38C-07 FNDC3A~LPAR6 fusion "FNDC3A," "LPAR6," chr13~chr13 49688867 48989946 10 +- 2.025326 10 6 4 10 106 TCGA-3B-A9HR-01A-11R-A38C-07 GLTSCR2~Nchr15~95399083 intergenic "GLTSCR2," "-," chr19~chr15 48253526 95399083 2 ++ 0.693147 1 0 1 1 4 TCGA-3B-A9HR-01A-11R-A38C-07 GSTP1~Nchr17~39074481 intergenic "GSTP1," "-," chr11~chr17 67351315 39074481 33 ++ 2.398717 29 2 27 29 2 TCGA-3B-A9HR-01A-11R-A38C-07 GSTP1~Nchr17~39074481 intergenic "GSTP1," "-," chr11~chr17 67351640 39074481 2 ++ 0.693147 2 1 1 2 2 TCGA-3B-A9HR-01A-11R-A38C-07 GSTP1~Nchr17~39074485 intergenic "GSTP1," "-," chr11~chr17 67351315 39074485 4 ++ 1.386294 4 0 4 4 2 TCGA-3B-A9HR-01A-11R-A38C-07 HSPB1~Nchr9~74622964 intergenic "HSPB1," "-," chr7~chr9 75932344 74622964 3 -+ 1.098612 1 1 0 1 84 TCGA-3B-A9HR-01A-11R-A38C-07 MYL9~MYLK fusion "MYL9," "MYLK," chr20~chr3 35178005 123332545 2 +- 0.693147 1 0 1 1 8 TCGA-3B-A9HR-01A-11R-A38C-07 NSD1~ARHGAP26 fusion "NSD1," "ARHGAP26," chr5~chr5 176639196 142287269 39 ++ 2.763729 36 16 20 36 88 TCGA-3B-A9HR-01A-11R-A38C-07 Nchr10~123072730~Nchr10~122823681 intergenic "-," "-," chr10~chr10 123072730 122823681 5 -- 1.332179 3 3 0 3 10 TCGA-3B-A9HR-01A-11R-A38C-07 Nchr10~15779871~Nchr10~15791467 intergenic "-," "-," chr10~chr10 15779871 15791467 11 +- 2.271869 9 1 8 9 36 TCGA-3B-A9HR-01A-11R-A38C-07 Nchr10~15779871~Nchr10~15797120 intergenic "-," "-," chr10~chr10 15779871 15797120 3 +- 1.098612 3 1 2 3 46 TCGA-3B-A9HR-01A-11R-A38C-07 Nchr10~15779939~Nchr10~15791467 intergenic "-," "-," chr10~chr10 15779939 15791467 4 +- 1.386294 4 2 2 4 30 TCGA-3B-A9HR-01A-11R-A38C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 78 -+ 2.514908 44 0 44 44 54 TCGA-3B-A9HR-01A-11R-A38C-07 Nchr12~104659073~Nchr12~104659181 intergenic "-," "-," chr12~chr12 104659073 104659181 3 -- 1.098612 3 3 0 3 38 TCGA-3B-A9HR-01A-11R-A38C-07 Nchr12~24366277~SOX5 intergenic "-," "SOX5," chr12~chr12 24366277 24048958 3 -- 1.098612 2 2 0 2 2 TCGA-3B-A9HR-01A-11R-A38C-07 Nchr17~16343551~Nchr17~16344712 intergenic "-," "-," chr17~chr17 16343551 16344712 2 -+ 0.693147 2 1 1 2 30 TCGA-3B-A9HR-01A-11R-A38C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 7 -+ 1.747868 7 5 2 7 214 TCGA-3B-A9HR-01A-11R-A38C-07 Nchr2~177065788~Nchr2~177065953 intergenic "-," "-," chr2~chr2 177065788 177065953 2 -- 0.693147 2 0 2 2 92 TCGA-3B-A9HR-01A-11R-A38C-07 Nchr2~177065909~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065909 177065788 3 ++ 0.636514 2 0 2 2 2 TCGA-3B-A9HR-01A-11R-A38C-07 Nchr2~177065915~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065915 177065788 3 ++ 1.098612 3 0 3 3 2 TCGA-3B-A9HR-01A-11R-A38C-07 Nchr5~113441478~Nchr5~113696642 intergenic "-," "-," chr5~chr5 113441478 113696642 7 ++ 1.747868 5 5 0 5 36 TCGA-3B-A9HR-01A-11R-A38C-07 Nchr5~140706204~TMEM232 intergenic "-," "TMEM232," chr5~chr5 140706204 109760617 3 +- 1.098612 3 2 1 3 18 TCGA-3B-A9HR-01A-11R-A38C-07 Nchr5~141572490~Nchr13~112531900 intergenic "-," "-," chr5~chr13 141572490 112531900 3 -- 1.098612 3 1 2 3 2 TCGA-3B-A9HR-01A-11R-A38C-07 Nchr5~25910535~MSN intergenic "-," "MSN," chr5~chrX 25910535 64956665 2 -+ 0.693147 2 1 1 2 74 TCGA-3B-A9HR-01A-11R-A38C-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40768381 13 ++ 2.138397 7 0 7 7 6 TCGA-3B-A9HR-01A-11R-A38C-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 231 ++ 2.713369 41 3 38 41 10 TCGA-3B-A9HR-01A-11R-A38C-07 RP11-371M22.1~Nchr5~113696642 intergenic "RP11-371M22.1," "-," chr5~chr5 113392868 113696642 3 ++ 1.098612 3 1 2 3 26 TCGA-3B-A9HR-01A-11R-A38C-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 4 +- 1.039721 4 0 4 4 4 TCGA-3B-A9HR-01A-11R-A38C-07 TP53~FAM196B fusion "WRAP53,TP53," "FAM196B," chr17~chr5 7590695 169311820 20 -- 2.415052 19 6 13 19 86 TCGA-DX-A7EO-01A-11R-A36F-07 EIF1~Nchr17~21163258 intergenic "EIF1," "-," chr17~chr17 39847063 21163258 2 ++ 0.693147 2 0 2 2 10 TCGA-DX-A7EO-01A-11R-A36F-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 106 -+ 2.531934 50 0 50 50 106 TCGA-DX-A7EO-01A-11R-A36F-07 Nchr12~104659308~Nchr12~104659246 intergenic "-," "-," chr12~chr12 104659308 104659246 2 ++ 0.693147 2 0 2 2 2 TCGA-DX-A7EO-01A-11R-A36F-07 Nchr14~106444660~Nchr14~106444858 intergenic "-," "-," chr14~chr14 106444660 106444858 8 -- 1.906155 7 0 7 7 2 TCGA-DX-A7EO-01A-11R-A36F-07 Nchr17~5740569~WSCD1 intergenic "-," "WSCD1," chr17~chr17 5740569 5983691 2 ++ 0.693147 2 0 2 2 2 TCGA-DX-A7EO-01A-11R-A36F-07 Nchr19~52646451~RPL37 intergenic "-," "RPL37," chr19~chr5 52646451 40834585 15 +- 1.204876 1 1 0 1 76 TCGA-DX-A7EO-01A-11R-A36F-07 Nchr19~5691703~RPL36 intergenic "-," "RPL36," chr19~chr19 5691703 5691543 2 ++ 0.693147 2 0 2 2 6 TCGA-DX-A7EO-01A-11R-A36F-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 15 -+ 2.245952 14 8 6 14 128 TCGA-DX-A7EO-01A-11R-A36F-07 Nchr1~171639784~Nchr1~171639676 intergenic "-," "-," chr1~chr1 171639784 171639676 4 ++ 1.039721 4 0 4 4 2 TCGA-DX-A7EO-01A-11R-A36F-07 Nchr21~17764005~Nchr21~17979314 intergenic "-," "-," chr21~chr21 17764005 17979314 3 ++ 0.636514 1 0 1 1 30 TCGA-DX-A7EO-01A-11R-A36F-07 Nchr2~177065789~Nchr2~177065913 intergenic "-," "-," chr2~chr2 177065789 177065913 3 -- 1.098612 3 0 3 3 8 TCGA-DX-A7EO-01A-11R-A36F-07 Nchr2~65943236~Nchr2~66149072 intergenic "-," "-," chr2~chr2 65943236 66149072 2 ++ 0.693147 2 0 2 2 22 TCGA-DX-A7EO-01A-11R-A36F-07 Nchr2~65943236~Nchr2~66198682 intergenic "-," "-," chr2~chr2 65943236 66198682 4 ++ 1.386294 2 0 2 2 14 TCGA-DX-A7EO-01A-11R-A36F-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 22 ++ 1.972247 18 18 0 18 4 TCGA-DX-A7EO-01A-11R-A36F-07 Nchr6~8438264~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8438264 8784424 2 ++ 0.693147 2 2 0 2 12 TCGA-DX-A7EO-01A-11R-A36F-07 Nchr9~3181277~CARM1P1 intergenic "-," "CARM1P1," chr9~chr9 3181277 2948282 4 -- 1.039721 4 2 2 4 4 TCGA-DX-A7EO-01A-11R-A36F-07 RPS9~Nchr19~50223193 intergenic "RPS9," "-," chr19~chr19 54705392 50223193 2 ++ 0.693147 2 2 0 2 264 TCGA-VT-A80J-01A-11R-A36F-07 AC096579.13~NchrY~13629437 intergenic "IGKJ2,AC096579.13," "-," chr2~chrY 89161070 13629437 6 ++ 1.56071 3 3 0 3 6 TCGA-VT-A80J-01A-11R-A36F-07 AP000487.5~Nchr11~68450510 intergenic "AP000487.5," "-," chr11~chr11 70244204 68450510 2 -+ 0.693147 2 2 0 2 10 TCGA-VT-A80J-01A-11R-A36F-07 AP000487.5~Nchr11~68450513 intergenic "AP000487.5," "-," chr11~chr11 70244204 68450513 2 -+ 0.693147 2 1 1 2 8 TCGA-VT-A80J-01A-11R-A36F-07 ATF6~ODZ3 fusion "ATF6," "ODZ3," chr1~chr4 161762117 183522077 24 ++ 2.380656 23 16 7 23 16 TCGA-VT-A80J-01A-11R-A36F-07 C15orf57~CBX3 fusion "C15orf57," "CBX3," chr15~chr7 40854971 26241389 6 -+ 1.791759 6 5 1 6 6 TCGA-VT-A80J-01A-11R-A36F-07 EP400~SFSWAP fusion "EP400," "SFSWAP," chr12~chr12 132446499 132262610 7 ++ 1.277034 5 2 3 5 6 TCGA-VT-A80J-01A-11R-A36F-07 EP400~SFSWAP fusion "EP400," "SFSWAP," chr12~chr12 132434581 132271008 10 ++ 1.886697 9 9 0 9 10 TCGA-VT-A80J-01A-11R-A36F-07 GBF1~Nchr10~102992011 intergenic "GBF1," "-," chr10~chr10 104019873 102992011 4 ++ 1.039721 4 1 3 4 20 TCGA-VT-A80J-01A-11R-A36F-07 GBF1~Nchr10~102997696 intergenic "GBF1," "-," chr10~chr10 104019873 102997696 2 ++ 0.693147 2 1 1 2 16 TCGA-VT-A80J-01A-11R-A36F-07 GIGYF2~EEF1B2 fusion "GIGYF2," "EEF1B2," chr2~chr2 233594854 207024743 4 ++ 1.386294 1 1 0 1 14 TCGA-VT-A80J-01A-11R-A36F-07 GNG12~PLXNA2 fusion "GNG12," "PLXNA2," chr1~chr1 68299027 208257925 2 -- 0.693147 2 0 2 2 6 TCGA-VT-A80J-01A-11R-A36F-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32497902 32525963 206 -- 2.056842 27 13 14 27 4 TCGA-VT-A80J-01A-11R-A36F-07 KCTD5~AC141586.5 fusion "KCTD5," "AC141586.5," chr16~chr16 2732801 2660463 7 ++ 1.747868 7 5 2 7 74 TCGA-VT-A80J-01A-11R-A36F-07 MYO5A~NEDD4 fusion "MYO5A," "NEDD4," chr15~chr15 52632393 56216897 7 -- 1.747868 3 2 1 3 6 TCGA-VT-A80J-01A-11R-A36F-07 NCRNA00238~Nchr14~66584657 intergenic "NCRNA00238," "-," chr14~chr14 66962980 66584657 3 -- 1.098612 3 2 1 3 2 TCGA-VT-A80J-01A-11R-A36F-07 NCRNA00238~Nchr14~66724179 intergenic "NCRNA00238," "-," chr14~chr14 66962980 66724179 2 -- 0.693147 2 1 1 2 2 TCGA-VT-A80J-01A-11R-A36F-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 95 -+ 2.659042 45 0 45 45 34 TCGA-VT-A80J-01A-11R-A36F-07 Nchr15~41913496~AC012652.1 intergenic "-," "AC012652.1," chr15~chr15 41913496 41562755 5 ++ 1.609438 4 4 0 4 8 TCGA-VT-A80J-01A-11R-A36F-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 4 ++ 1.386294 4 4 0 4 6 TCGA-VT-A80J-01A-11R-A36F-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 47 -+ 2.940923 45 28 17 45 114 TCGA-VT-A80J-01A-11R-A36F-07 Nchr2~177065788~Nchr2~177065931 intergenic "-," "-," chr2~chr2 177065788 177065931 3 -- 1.098612 3 0 3 3 46 TCGA-VT-A80J-01A-11R-A36F-07 Nchr2~45223806~KRTCAP2 intergenic "-," "KRTCAP2," chr2~chr1 45223806 155141996 2 -- 0.693147 1 0 1 1 4 TCGA-VT-A80J-01A-11R-A36F-07 Nchr2~81775871~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81775871 82075877 19 ++ 2.451583 14 5 9 14 28 TCGA-VT-A80J-01A-11R-A36F-07 Nchr6~144605870~MAP3K5 intergenic "-," "MAP3K5," chr6~chr6 144605870 136958544 2 -- 0.693147 2 2 0 2 8 TCGA-VT-A80J-01A-11R-A36F-07 Nchr8~128806980~Nchr8~129082406 intergenic "-," "-," chr8~chr8 128806980 129082406 10 ++ 2.302585 9 4 5 9 76 TCGA-VT-A80J-01A-11R-A36F-07 Nchr8~128806980~Nchr8~129108764 intergenic "-," "-," chr8~chr8 128806980 129108764 13 ++ 1.631345 12 2 10 12 54 TCGA-VT-A80J-01A-11R-A36F-07 ODZ3~AC096669.3 fusion "ODZ3," "AC096669.3," chr4~chr2 183522314 108171589 6 ++ 1.329661 6 3 3 6 8 TCGA-VT-A80J-01A-11R-A36F-07 PLXNA2~RRAGC fusion "PLXNA2," "RRAGC," chr1~chr1 208252605 39305300 2 -- 0.693147 2 2 0 2 6 TCGA-VT-A80J-01A-11R-A36F-07 PNPLA8~Nchr7~96356972 intergenic "PNPLA8," "-," chr7~chr7 108166473 96356972 18 -- 2.351257 16 14 2 16 194 TCGA-VT-A80J-01A-11R-A36F-07 PNPLA8~SHFM1 fusion "PNPLA8," "SHFM1," chr7~chr7 108166473 96324203 44 -- 2.758341 42 22 20 42 162 TCGA-VT-A80J-01A-11R-A36F-07 PPFIA1~BBOX1 fusion "PPFIA1," "BBOX1," chr11~chr11 70202360 27136999 7 ++ 1.549826 7 6 1 7 16 TCGA-VT-A80J-01A-11R-A36F-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 5 ++ 1.609438 5 3 2 5 6 TCGA-VT-A80J-01A-11R-A36F-07 SENP5~Nchr3~197035775 intergenic "SENP5," "-," chr3~chr3 196594944 197035775 3 ++ 1.098612 3 1 2 3 8 TCGA-VT-A80J-01A-11R-A36F-07 SMAD3~C15orf44 fusion "SMAD3," "C15orf44," chr15~chr15 67358698 65877226 8 +- 1.906155 8 3 5 8 24 TCGA-VT-A80J-01A-11R-A36F-07 UBE2Q2~C15orf27 fusion "UBE2Q2," "C15orf27," chr15~chr15 76136187 76426509 4 ++ 1.039721 4 1 3 4 24 TCGA-VT-A80J-01A-11R-A36F-07 UTRN~Nchr6~144534368 intergenic "UTRN," "-," chr6~chr6 144613043 144534368 6 +- 1.791759 5 4 1 5 14 TCGA-VT-A80J-01A-11R-A36F-07 YWHAE~Nchr2~65886566 intergenic "YWHAE," "-," chr17~chr2 1303341 65886566 16 -- 2.067976 16 11 5 16 34 TCGA-VT-A80J-01A-11R-A36F-07 YWHAE~Nchr2~65889732 intergenic "YWHAE," "-," chr17~chr2 1303341 65889732 2 -- 0.693147 2 1 1 2 6 TCGA-VT-A80G-01A-11R-A36F-07 ARFIP1~TSPAN5 fusion "ARFIP1," "TSPAN5," chr4~chr4 153701378 99428879 4 +- 1.386294 3 0 3 3 6 TCGA-VT-A80G-01A-11R-A36F-07 ATRX~SNTB2 fusion "ATRX," "SNTB2," chrX~chr16 76953071 69304046 12 -+ 2.094729 7 1 6 7 14 TCGA-VT-A80G-01A-11R-A36F-07 C20orf112~RP4-705O1.1 fusion "C20orf112," "RP4-705O1.1," chr20~chr20 31062404 37844755 2 -- 0.693147 2 2 0 2 4 TCGA-VT-A80G-01A-11R-A36F-07 C20orf112~RP4-705O1.1 fusion "C20orf112," "RP4-705O1.1," chr20~chr20 31062404 37853327 2 -- 0.693147 1 1 0 1 8 TCGA-VT-A80G-01A-11R-A36F-07 C3orf21~ETV5 fusion "C3orf21," "ETV5," chr3~chr3 194877178 185783861 10 -- 2.025326 6 3 3 6 6 TCGA-VT-A80G-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48269211 94048829 2 -+ 0.693147 2 1 1 2 6 TCGA-VT-A80G-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48263319 94058563 2 -+ 0.693147 2 2 0 2 2 TCGA-VT-A80G-01A-11R-A36F-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189867702 94053667 3 ++ 0.636514 3 2 1 3 2 TCGA-VT-A80G-01A-11R-A36F-07 COL3A1~Nchr2~189770793 intergenic "COL3A1," "-," chr2~chr2 189864303 189770793 2 ++ 0.693147 1 1 0 1 10 TCGA-VT-A80G-01A-11R-A36F-07 COL3A1~Nchr2~189775663 intergenic "COL3A1," "-," chr2~chr2 189864303 189775663 64 ++ 2.694886 63 11 52 63 692 TCGA-VT-A80G-01A-11R-A36F-07 COL3A1~Nchr2~189777643 intergenic "COL3A1," "-," chr2~chr2 189864303 189777643 2 ++ 0.693147 2 2 0 2 132 TCGA-VT-A80G-01A-11R-A36F-07 COL3A1~Nchr2~189781682 intergenic "COL3A1," "-," chr2~chr2 189864303 189781682 66 ++ 2.832425 64 29 35 64 148 TCGA-VT-A80G-01A-11R-A36F-07 FAM48A~POSTN fusion "FAM48A," "POSTN," chr13~chr13 37603902 38138697 22 -- 2.563151 21 8 13 21 56 TCGA-VT-A80G-01A-11R-A36F-07 GLIS3~IL17REL fusion "GLIS3," "IL17REL," chr9~chr22 3932360 50439660 2 -- 0.693147 2 1 1 2 4 TCGA-VT-A80G-01A-11R-A36F-07 HERC2~Nchr15~47256923 intergenic "HERC2," "-," chr15~chr15 28414630 47256923 4 -+ 1.386294 4 4 0 4 16 TCGA-VT-A80G-01A-11R-A36F-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32487274 32549523 2 -- 0.693147 2 0 2 2 28 TCGA-VT-A80G-01A-11R-A36F-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 230 -- 2.5433 144 49 95 144 10 TCGA-VT-A80G-01A-11R-A36F-07 ITGAV~ARHGAP15 fusion "ITGAV," "ARHGAP15," chr2~chr2 187534541 143981581 2 ++ 0.693147 2 2 0 2 20 TCGA-VT-A80G-01A-11R-A36F-07 ITGAV~ARHGAP15 fusion "ITGAV," "ARHGAP15," chr2~chr2 187534541 143986150 8 ++ 1.559581 7 2 5 7 20 TCGA-VT-A80G-01A-11R-A36F-07 LRAT~NAALADL2 fusion "LRAT," "NAALADL2," chr4~chr3 155593452 174814580 3 ++ 1.098612 3 0 3 3 22 TCGA-VT-A80G-01A-11R-A36F-07 LRAT~NAALADL2 fusion "LRAT," "NAALADL2," chr4~chr3 155557548 174814580 2 ++ 0.693147 2 1 1 2 24 TCGA-VT-A80G-01A-11R-A36F-07 NAALADL2~Nchr4~150832234 intergenic "NAALADL2," "-," chr3~chr4 175293975 150832234 4 ++ 1.386294 2 2 0 2 12 TCGA-VT-A80G-01A-11R-A36F-07 NAALADL2~Nchr4~150847689 intergenic "NAALADL2," "-," chr3~chr4 175293975 150847689 2 ++ 0.693147 1 0 1 1 4 TCGA-VT-A80G-01A-11R-A36F-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 15 -+ 2.430791 14 6 8 14 146 TCGA-VT-A80G-01A-11R-A36F-07 Nchr2~177065807~Nchr2~177065957 intergenic "-," "-," chr2~chr2 177065807 177065957 2 -- 0.693147 1 1 0 1 12 TCGA-VT-A80G-01A-11R-A36F-07 POT1~Nchr7~123865015 intergenic "POT1," "-," chr7~chr7 124532320 123865015 10 -- 1.886697 10 7 3 10 26 TCGA-VT-A80G-01A-11R-A36F-07 PPP4R1~NUP93 fusion "PPP4R1," "NUP93," chr18~chr16 9614224 56857619 32 -+ 2.677143 31 20 11 31 130 TCGA-VT-A80G-01A-11R-A36F-07 RABEP1~Nchr6~81743697 intergenic "RABEP1," "-," chr17~chr6 5253924 81743697 3 ++ 1.098612 3 1 2 3 12 TCGA-VT-A80G-01A-11R-A36F-07 RABEP1~Nchr6~81743919 intergenic "RABEP1," "-," chr17~chr6 5253924 81743919 3 ++ 0.636514 3 3 0 3 6 TCGA-VT-A80G-01A-11R-A36F-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 2 ++ 0.693147 2 1 1 2 2 TCGA-VT-A80G-01A-11R-A36F-07 SNTB2~NUP93 fusion "SNTB2," "NUP93," chr16~chr16 69304188 56852576 16 ++ 2.426015 1 1 0 1 4 TCGA-VT-A80G-01A-11R-A36F-07 SYNJ2~Nchr14~51863838 intergenic "SYNJ2," "-," chr6~chr14 158438322 51863838 3 +- 1.098612 3 2 1 3 2 TCGA-VT-A80G-01A-11R-A36F-07 TMEM9B~PSIP1 fusion "TMEM9B," "PSIP1," chr11~chr9 8983639 15490122 33 -- 2.614863 29 17 12 29 68 TCGA-VT-A80G-01A-11R-A36F-07 UBP1~SLC24A3 fusion "UBP1," "SLC24A3," chr3~chr20 33450728 19565615 34 -+ 3.021691 31 23 8 31 88 TCGA-VT-A80G-01A-11R-A36F-07 UBP1~SLC24A3 fusion "UBP1," "SLC24A3," chr3~chr20 33450182 19565615 4 -+ 1.386294 3 2 1 3 88 TCGA-VT-A80G-01A-11R-A36F-07 VCL~ADK fusion "VCL," "ADK," chr10~chr10 75758133 76429941 3 ++ 0.636514 3 2 1 3 4 TCGA-Z4-A9VC-01A-11R-A37L-07 AKAP13~Nchr14~22934278 intergenic "AKAP13," "-," chr15~chr14 85924029 22934278 15 +- 2.395908 13 6 7 13 26 TCGA-Z4-A9VC-01A-11R-A37L-07 DDIT3~FUS fusion "DDIT3," "FUS," chr12~chr16 57914201 31200444 13 -+ 2.245035 11 1 10 11 30 TCGA-Z4-A9VC-01A-11R-A37L-07 DDIT3~FUS fusion "DDIT3," "FUS," chr12~chr16 57914201 31200986 9 -+ 1.889159 8 0 8 8 12 TCGA-Z4-A9VC-01A-11R-A37L-07 FUS~DDIT3 fusion "FUS," "DDIT3,DDIT3," chr16~chr12 31199678 57911536 159 +- 2.869193 188 119 29 188 74 TCGA-Z4-A9VC-01A-11R-A37L-07 GAB1~RP11-789C2.1 fusion "GAB1," "RP11-789C2.1," chr4~chr4 144258413 132949609 2 +- 0.693147 2 0 2 2 2 TCGA-Z4-A9VC-01A-11R-A37L-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31236793 31321968 3 -- 1.098612 3 1 2 3 14 TCGA-Z4-A9VC-01A-11R-A37L-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 290 -- 2.358152 290 289 1 290 94 TCGA-Z4-A9VC-01A-11R-A37L-07 IGKV5-2~AC096579.7 fusion "IGKV5-2," "IGKC,AC096579.7," chr2~chr2 89196859 89157196 14 +- 1.215388 14 10 4 14 34 TCGA-Z4-A9VC-01A-11R-A37L-07 Nchr10~107729821~Nchr10~107433446 intergenic "-," "-," chr10~chr10 107729821 107433446 6 -- 1.329661 6 5 1 6 32 TCGA-Z4-A9VC-01A-11R-A37L-07 Nchr10~135379807~RP11-108K14.4 intergenic "-," "RP11-108K14.4," chr10~chr10 135379807 135269741 7 ++ 1.747868 7 1 6 7 18 TCGA-Z4-A9VC-01A-11R-A37L-07 Nchr11~27603266~RPS25 intergenic "-," "RPS25," chr11~chr11 27603266 118888759 7 -- 1.475076 6 5 1 6 436 TCGA-Z4-A9VC-01A-11R-A37L-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 109 -+ 2.569687 64 0 64 64 66 TCGA-Z4-A9VC-01A-11R-A37L-07 Nchr11~93922106~ARPC3 intergenic "-," "ARPC3," chr11~chr12 93922106 110888131 2 +- 0.693147 1 0 1 1 4 TCGA-Z4-A9VC-01A-11R-A37L-07 Nchr14~99439503~Nchr14~99439336 intergenic "-," "-," chr14~chr14 99439503 99439336 2 ++ 0.693147 2 1 1 2 22 TCGA-Z4-A9VC-01A-11R-A37L-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 10 ++ 2.025326 9 2 7 9 8 TCGA-Z4-A9VC-01A-11R-A37L-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 3 ++ 1.098612 3 1 2 3 8 TCGA-Z4-A9VC-01A-11R-A37L-07 Nchr18~71314806~Nchr18~71075957 intergenic "-," "-," chr18~chr18 71314806 71075957 3 -- 1.098612 3 1 2 3 14 TCGA-Z4-A9VC-01A-11R-A37L-07 Nchr2~81709228~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81709228 82075877 4 ++ 1.039721 4 1 3 4 14 TCGA-Z4-A9VC-01A-11R-A37L-07 Nchr2~81775871~Nchr2~82049394 intergenic "-," "-," chr2~chr2 81775871 82049394 6 ++ 1.56071 6 2 4 6 26 TCGA-Z4-A9VC-01A-11R-A37L-07 Nchr2~81775871~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81775871 82075877 22 ++ 2.815205 17 10 7 17 22 TCGA-Z4-A9VC-01A-11R-A37L-07 Nchr2~81806733~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81806733 82075877 2 ++ 0.693147 2 1 1 2 24 TCGA-Z4-A9VC-01A-11R-A37L-07 Nchr3~5676613~Nchr3~5882821 intergenic "-," "-," chr3~chr3 5676613 5882821 2 ++ 0.693147 2 1 1 2 2 TCGA-Z4-A9VC-01A-11R-A37L-07 Nchr4~133217134~AE000661.28 intergenic "-," "AE000661.28,TRAC," chr4~chr14 133217134 23016447 20 -+ 2.527519 19 18 1 19 22 TCGA-Z4-A9VC-01A-11R-A37L-07 Nchr4~133217134~RP11-789C2.1 intergenic "-," "RP11-789C2.1," chr4~chr4 133217134 132949636 6 -- 1.56071 5 4 1 5 10 TCGA-Z4-A9VC-01A-11R-A37L-07 Nchr4~184719208~STOX2 intergenic "-," "STOX2," chr4~chr4 184719208 184922478 2 ++ 0.693147 2 0 2 2 8 TCGA-Z4-A9VC-01A-11R-A37L-07 Nchr6~153603717~Nchr6~153603872 intergenic "-," "-," chr6~chr6 153603717 153603872 2 -- 0.693147 2 0 2 2 10 TCGA-Z4-A9VC-01A-11R-A37L-07 Nchr8~128691459~Nchr8~128433208 intergenic "-," "-," chr8~chr8 128691459 128433208 3 -- 1.098612 3 1 2 3 4 TCGA-Z4-A9VC-01A-11R-A37L-07 Nchr9~44877796~Nchr4~190471557 intergenic "-," "-," chr9~chr4 44877796 190471557 16 -+ 2.187322 7 7 0 7 2 TCGA-Z4-A9VC-01A-11R-A37L-07 RP11-254K3.1~PPAPDC1A fusion "RP11-254K3.1," "PPAPDC1A," chr10~chr10 121968507 122263330 6 ++ 1.56071 6 3 3 6 8 TCGA-Z4-A9VC-01A-11R-A37L-07 RP11-284G10.1~Nchr9~118016672 intergenic "RP11-284G10.1," "-," chr9~chr9 118503741 118016672 5 -- 1.609438 3 2 1 3 4 TCGA-Z4-A9VC-01A-11R-A37L-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 3 ++ 1.098612 3 2 1 3 4 TCGA-Z4-A9VC-01A-11R-A37L-07 RPL37A~Nchr11~111759999 intergenic "RPL37A,RPL37A," "-," chr2~chr11 217366082 111759999 6 ++ 0.450561 4 2 2 4 870 TCGA-Z4-A9VC-01A-11R-A37L-07 RPS18~Nchr6~33244734 intergenic "RPS18," "-," chr6~chr6 33240488 33244734 2 +- 0.693147 1 1 0 1 16 TCGA-WK-A8XY-01A-11R-A37L-07 BCKDHB~Nchr6~99452576 intergenic "BCKDHB," "-," chr6~chr6 80912929 99452576 7 ++ 1.747868 7 5 2 7 8 TCGA-WK-A8XY-01A-11R-A37L-07 C1orf196~KAZN fusion "C1orf196," "KAZN," chr1~chr1 14507087 14925479 4 ++ 1.039721 4 2 2 4 10 TCGA-WK-A8XY-01A-11R-A37L-07 COL4A2~COL4A1 fusion "COL4A2," "COL4A1," chr13~chr13 110960470 110895081 2 +- 0.693147 2 1 1 2 2 TCGA-WK-A8XY-01A-11R-A37L-07 HSPB1~NchrX~49090631 intergenic "HSPB1," "-," chr7~chrX 75933418 49090631 2 +- 0.693147 1 1 0 1 54 TCGA-WK-A8XY-01A-11R-A37L-07 INTS3~CHTOP fusion "INTS3," "CHTOP," chr1~chr1 153730239 153614719 61 ++ 3.027018 59 31 28 59 242 TCGA-WK-A8XY-01A-11R-A37L-07 INTS3~CHTOP fusion "INTS3," "CHTOP," chr1~chr1 153730239 153614722 60 ++ 2.822268 56 23 33 56 228 TCGA-WK-A8XY-01A-11R-A37L-07 NCRNA00238~Nchr14~66724179 intergenic "NCRNA00238," "-," chr14~chr14 66962980 66724179 2 -- 0.693147 2 2 0 2 4 TCGA-WK-A8XY-01A-11R-A37L-07 Nchr11~27603245~RPS25 intergenic "-," "RPS25," chr11~chr11 27603245 118889038 4 -- 1.386294 4 1 3 4 20 TCGA-WK-A8XY-01A-11R-A37L-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 98 -+ 2.535744 49 0 49 49 32 TCGA-WK-A8XY-01A-11R-A37L-07 Nchr18~37331293~Nchr18~37115579 intergenic "-," "-," chr18~chr18 37331293 37115579 11 -- 1.972247 5 4 1 5 16 TCGA-WK-A8XY-01A-11R-A37L-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 22 -+ 2.539367 21 10 11 21 182 TCGA-WK-A8XY-01A-11R-A37L-07 Nchr1~212732133~Nchr1~212732108 intergenic "-," "-," chr1~chr1 212732133 212732108 19 ++ 1.90966 18 10 8 18 2 TCGA-WK-A8XY-01A-11R-A37L-07 Nchr5~113334059~Nchr5~113557177 intergenic "-," "-," chr5~chr5 113334059 113557177 3 ++ 0.636514 3 2 1 3 4 TCGA-WK-A8XY-01A-11R-A37L-07 Nchr6~8438264~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8438264 8784424 5 ++ 1.609438 4 3 1 4 14 TCGA-WK-A8XY-01A-11R-A37L-07 Nchr6~8558876~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8558876 8784424 8 ++ 2.079442 4 3 1 4 4 TCGA-WK-A8XY-01A-11R-A37L-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 43 ++ 2.073978 4 1 3 4 2 TCGA-WK-A8XY-01A-11R-A37L-07 RNF152~Nchr18~59259856 intergenic "RNF152," "-," chr18~chr18 59560028 59259856 3 -- 1.098612 3 1 2 3 6 TCGA-WK-A8XY-01A-11R-A37L-07 TPM2~ACTG1 fusion "TPM2," "ACTG1," chr9~chr17 35685061 79478652 3 -- 0.636514 3 0 3 3 4 TCGA-WK-A8XS-01A-11R-A37L-07 ABCA1~Nchr3~171287665 intergenic "ABCA1," "-," chr9~chr3 107594855 171287665 14 -+ 2.205598 14 5 9 14 30 TCGA-WK-A8XS-01A-11R-A37L-07 AC027763.2~ZNF652 fusion "AC027763.2," "ZNF652," chr17~chr17 6905803 47376286 13 -- 2.098147 13 6 7 13 38 TCGA-WK-A8XS-01A-11R-A37L-07 AC027763.2~ZNF652 fusion "ALOX12,AC027763.2," "ZNF652," chr17~chr17 6913115 47376286 2 -- 0.693147 2 0 2 2 6 TCGA-WK-A8XS-01A-11R-A37L-07 AC027763.2~ZNF652 fusion "AC027763.2," "ZNF652," chr17~chr17 6915515 47376286 3 -- 1.098612 3 1 2 3 16 TCGA-WK-A8XS-01A-11R-A37L-07 ATRX~PGK1 fusion "ATRX," "PGK1," chrX~chrX 76907604 77378332 2 -+ 0.693147 2 1 1 2 8 TCGA-WK-A8XS-01A-11R-A37L-07 C15orf57~CBX3 fusion "C15orf57," "CBX3," chr15~chr7 40854971 26241389 3 -+ 1.098612 3 3 0 3 8 TCGA-WK-A8XS-01A-11R-A37L-07 C17orf57~NPEPPS fusion "C17orf57," "NPEPPS," chr17~chr17 45452332 45689826 15 ++ 2.02623 15 9 6 15 32 TCGA-WK-A8XS-01A-11R-A37L-07 CALCOCO2~WRAP53 fusion "CALCOCO2," "WRAP53," chr17~chr17 46933549 7604059 124 ++ 3.070138 121 77 44 121 252 TCGA-WK-A8XS-01A-11R-A37L-07 CDC27~Nchr17~74605312 intergenic "CDC27," "-," chr17~chr17 45199810 74605312 5 -- 1.332179 4 4 0 4 4 TCGA-WK-A8XS-01A-11R-A37L-07 CDC27~Nchr17~74605503 intergenic "CDC27," "-," chr17~chr17 45199810 74605503 7 -- 1.747868 7 4 3 7 6 TCGA-WK-A8XS-01A-11R-A37L-07 CDC27~Nchr17~74608831 intergenic "CDC27," "-," chr17~chr17 45199810 74608831 18 -- 1.769036 14 5 9 14 96 TCGA-WK-A8XS-01A-11R-A37L-07 CHUK~CRYL1 fusion "CHUK," "CRYL1," chr10~chr13 101953072 21013893 8 -- 2.079442 8 3 5 8 20 TCGA-WK-A8XS-01A-11R-A37L-07 COG4~PMFBP1 fusion "COG4," "PMFBP1," chr16~chr16 70546142 72188358 11 -- 2.145842 11 3 8 11 26 TCGA-WK-A8XS-01A-11R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48272839 2 +- 0.693147 2 1 1 2 4 TCGA-WK-A8XS-01A-11R-A37L-07 CRYL1~MLNR fusion "CRYL1," "MLNR," chr13~chr13 21099893 49796176 4 -+ 1.039721 4 0 4 4 20 TCGA-WK-A8XS-01A-11R-A37L-07 CTD-2337A12.1~CAST fusion "CTD-2337A12.1," "CAST," chr5~chr5 95715356 96011243 10 ++ 1.973001 5 0 5 5 18 TCGA-WK-A8XS-01A-11R-A37L-07 CTD-2337A12.1~CAST fusion "CTD-2337A12.1," "CAST," chr5~chr5 95715351 96011243 2 ++ 0.693147 2 0 2 2 16 TCGA-WK-A8XS-01A-11R-A37L-07 EFCAB11~Nchr14~90095480 intergenic "EFCAB11," "-," chr14~chr14 90397885 90095480 3 -- 1.098612 3 2 1 3 4 TCGA-WK-A8XS-01A-11R-A37L-07 EFHA1~Nchr13~27895920 intergenic "EFHA1," "-," chr13~chr13 22113441 27895920 8 -+ 1.667462 7 3 4 7 10 TCGA-WK-A8XS-01A-11R-A37L-07 HN1~Nchr2~174296244 intergenic "HN1," "-," chr17~chr2 73143651 174296244 55 -- 1.233874 29 29 0 29 2 TCGA-WK-A8XS-01A-11R-A37L-07 ISOC1~Nchr5~128679362 intergenic "ISOC1," "-," chr5~chr5 128442755 128679362 2 ++ 0.693147 2 2 0 2 16 TCGA-WK-A8XS-01A-11R-A37L-07 MRVI1~Nchr19~31213994 intergenic "MRVI1," "-," chr11~chr19 10628289 31213994 4 -- 1.386294 4 3 1 4 6 TCGA-WK-A8XS-01A-11R-A37L-07 MYL9~TPM2 fusion "MYL9," "TPM2," chr20~chr9 35177677 35685663 2 +- 0.693147 2 0 2 2 2 TCGA-WK-A8XS-01A-11R-A37L-07 NRIP1~AF127936.7 fusion "NRIP1," "AF127936.7," chr21~chr21 16437066 16230029 4 -- 1.386294 4 4 0 4 18 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr10~115117107~HABP2 intergenic "-," "HABP2," chr10~chr10 115117107 115327248 3 ++ 1.098612 3 2 1 3 10 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr11~39142139~Nchr11~38900910 intergenic "-," "-," chr11~chr11 39142139 38900910 3 -- 1.098612 3 1 2 3 4 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 44 -+ 2.595979 23 0 23 23 26 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr12~46578901~Nchr12~46579039 intergenic "-," "-," chr12~chr12 46578901 46579039 2 -- 0.693147 2 1 1 2 2 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr13~76509067~Nchr13~76841631 intergenic "-," "-," chr13~chr13 76509067 76841631 9 ++ 1.735126 9 8 1 9 22 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr13~76509067~Nchr13~76908096 intergenic "-," "-," chr13~chr13 76509067 76908096 3 ++ 1.098612 3 2 1 3 4 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr13~76509067~Nchr13~76928485 intergenic "-," "-," chr13~chr13 76509067 76928485 4 ++ 1.039721 4 2 2 4 6 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr14~58448631~SLC35F4 intergenic "-," "SLC35F4," chr14~chr14 58448631 58060842 4 -- 1.386294 4 1 3 4 6 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr14~65751911~FUT8 intergenic "-," "FUT8," chr14~chr14 65751911 66028055 6 ++ 1.329661 4 0 4 4 8 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr14~90085372~FOXN3 intergenic "-," "FOXN3," chr14~chr14 90085372 89878834 10 -- 2.163956 9 9 0 9 12 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr15~21916043~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21916043 20876597 6 -- 1.791759 5 2 3 5 6 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr15~47476615~SEMA6D intergenic "-," "SEMA6D," chr15~chr15 47476615 47762671 6 ++ 1.791759 5 4 1 5 8 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 5 ++ 1.609438 4 2 2 4 6 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 6 ++ 1.791759 4 0 4 4 8 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 5 -+ 1.332179 5 5 0 5 102 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr1~173431463~TNFSF4 intergenic "-," "TNFSF4," chr1~chr1 173431463 173157708 4 -- 1.386294 3 1 2 3 14 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr1~173445771~TNFSF4 intergenic "-," "TNFSF4," chr1~chr1 173445771 173157708 6 -- 1.791759 4 3 1 4 12 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr1~173445771~TNFSF4 intergenic "-," "TNFSF4," chr1~chr1 173445771 173176324 2 -- 0.693147 2 2 0 2 12 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr1~76081538~SLC44A5 intergenic "-," "SLC44A5," chr1~chr1 76081538 75805315 11 -- 2.145842 8 7 1 8 4 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr20~4004463~MYLK intergenic "-," "MYLK," chr20~chr3 4004463 123332543 2 +- 0.693147 2 0 2 2 2 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 10 ++ 1.973001 8 5 3 8 12 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr3~110594129~Nchr3~110359553 intergenic "-," "-," chr3~chr3 110594129 110359553 3 -- 0.636514 2 1 1 2 10 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr3~187872040~LPP intergenic "-," "LPP," chr3~chr3 187872040 188123900 18 ++ 2.50529 11 0 11 11 6 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr4~24473998~PPARGC1A intergenic "-," "PPARGC1A," chr4~chr4 24473998 23886554 3 -- 1.098612 3 1 2 3 12 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr5~113441478~Nchr5~113696642 intergenic "-," "-," chr5~chr5 113441478 113696642 2 ++ 0.693147 2 2 0 2 8 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 9 ++ 2.043192 9 9 0 9 4 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr7~140912504~Nchr7~141137408 intergenic "-," "-," chr7~chr7 140912504 141137408 6 ++ 1.791759 2 0 2 2 4 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 25 ++ 2.358831 6 1 5 6 2 TCGA-WK-A8XS-01A-11R-A37L-07 Nchr8~70042126~Nchr8~70042258 intergenic "-," "-," chr8~chr8 70042126 70042258 4 -- 1.039721 4 4 0 4 2 TCGA-WK-A8XS-01A-11R-A37L-07 PCSK7~RPS20 fusion "TAGLN,PCSK7,TAGLN," "RPS20," chr11~chr8 117075249 56987032 2 -- 0.693147 2 0 2 2 2 TCGA-WK-A8XS-01A-11R-A37L-07 PGK1~NchrX~96982631 intergenic "PGK1," "-," chrX~chrX 77380922 96982631 8 +- 1.732868 5 4 1 5 2 TCGA-WK-A8XS-01A-11R-A37L-07 PTMS~CALD1 fusion "PTMS," "CALD1," chr12~chr7 6879165 134632479 3 ++ 1.098612 3 0 3 3 2 TCGA-WK-A8XS-01A-11R-A37L-07 RP11-123O10.4~GRIP1 fusion "RP11-123O10.4," "GRIP1," chr12~chr12 67462830 66935730 3 -- 0.636514 3 3 0 3 6 TCGA-WK-A8XS-01A-11R-A37L-07 RP11-123O10.4~GRIP1 fusion "RP11-123O10.4," "GRIP1," chr12~chr12 67462830 66990707 8 -- 2.079442 6 3 3 6 20 TCGA-WK-A8XS-01A-11R-A37L-07 RP11-14D22.2~PRICKLE2 fusion "RP11-14D22.2," "RP11-129B22.7,PRICKLE2," chr3~chr3 64430159 64184643 3 -- 1.098612 2 2 0 2 2 TCGA-WK-A8XS-01A-11R-A37L-07 RP11-163F15.1~Nchr10~110036926 intergenic "RP11-163F15.1," "-," chr10~chr10 110321435 110036926 3 -- 1.098612 3 2 1 3 4 TCGA-WK-A8XS-01A-11R-A37L-07 RP11-215N21.1~Nchr10~109566452 intergenic "RP11-215N21.1," "-," chr10~chr10 109800119 109566452 3 -- 1.098612 3 2 1 3 4 TCGA-WK-A8XS-01A-11R-A37L-07 RP11-335L9.1~Nchr3~177483365 intergenic "RP11-335L9.1," "-," chr3~chr3 177264720 177483365 2 ++ 0.693147 2 1 1 2 40 TCGA-WK-A8XS-01A-11R-A37L-07 RP11-335L9.1~Nchr3~177483365 intergenic "RP11-335L9.1," "-," chr3~chr3 177264259 177483365 2 ++ 0.693147 2 1 1 2 40 TCGA-WK-A8XS-01A-11R-A37L-07 RP11-335L9.1~Nchr3~177483365 intergenic "RP11-335L9.1," "-," chr3~chr3 177159898 177483365 14 ++ 2.341994 14 7 7 14 58 TCGA-WK-A8XS-01A-11R-A37L-07 RP11-335L9.1~Nchr3~177483365 intergenic "RP11-335L9.1," "-," chr3~chr3 177257281 177483365 13 ++ 2.311423 6 2 4 6 20 TCGA-WK-A8XS-01A-11R-A37L-07 RP11-335L9.1~Nchr3~177483368 intergenic "RP11-335L9.1," "-," chr3~chr3 177159898 177483368 5 ++ 1.609438 5 2 3 5 48 TCGA-WK-A8XS-01A-11R-A37L-07 RP11-335L9.1~RP11-91K9.1 fusion "RP11-335L9.1," "RP11-91K9.1," chr3~chr3 177347343 177613401 9 ++ 1.889159 8 2 6 8 6 TCGA-WK-A8XS-01A-11R-A37L-07 RP11-553A10.1~Nchr3~110359553 intergenic "RP11-553A10.1," "-," chr3~chr3 110611237 110359553 7 -- 1.475076 7 2 5 7 16 TCGA-WK-A8XS-01A-11R-A37L-07 RP11-553A10.2~Nchr3~110359553 intergenic "RP11-553A10.2," "-," chr3~chr3 110688349 110359553 4 -- 1.039721 4 4 0 4 12 TCGA-WK-A8XS-01A-11R-A37L-07 RP11-553A10.2~Nchr3~110437518 intergenic "RP11-553A10.2," "-," chr3~chr3 110688349 110437518 5 -- 0.950271 5 0 5 5 16 TCGA-WK-A8XS-01A-11R-A37L-07 RP3-390M24.1~Nchr6~79564203 intergenic "RP3-390M24.1," "-," chr6~chr6 79314240 79564203 2 -+ 0.693147 2 1 1 2 8 TCGA-WK-A8XS-01A-11R-A37L-07 SNX30~Nchr9~139373389 intergenic "SNX30," "-," chr9~chr9 115567247 139373389 17 ++ 2.363921 14 12 2 14 42 TCGA-WK-A8XS-01A-11R-A37L-07 SNX30~SEC16A fusion "SNX30," "SEC16A," chr9~chr9 115567247 139338352 9 +- 2.043192 9 7 2 9 4 TCGA-WK-A8XS-01A-11R-A37L-07 TPM2~ACTG1 fusion "TPM2," "ACTG1," chr9~chr17 35685061 79478652 3 -- 1.098612 3 1 2 3 12 TCGA-WK-A8XS-01A-11R-A37L-07 TRAF6~RRM1 fusion "TRAF6," "RRM1," chr11~chr11 36531598 4147914 3 -+ 1.098612 3 3 0 3 14 TCGA-WK-A8XS-01A-11R-A37L-07 UQCRC2~Nchr11~80964012 intergenic "UQCRC2," "-," chr16~chr11 21974206 80964012 22 +- 2.410194 17 1 16 17 12 TCGA-WK-A8XS-01A-11R-A37L-07 VIM~TPM2 fusion "VIM," "TPM2," chr10~chr9 17271432 35689920 2 +- 0.693147 2 0 2 2 2 TCGA-X6-A8C2-01A-11R-A36F-07 AC005895.3~Nchr5~165748345 intergenic "AC005895.3," "-," chr5~chr5 149533002 165748345 7 +- 1.475076 7 1 6 7 22 TCGA-X6-A8C2-01A-11R-A36F-07 AC012487.2~Nchr7~62669602 intergenic "AC012487.2," "-," chr2~chr7 109128386 62669602 3 -+ 0.636514 3 2 1 3 2 TCGA-X6-A8C2-01A-11R-A36F-07 ALDH9A1~MGST3 fusion "ALDH9A1," "MGST3," chr1~chr1 165648679 165619078 18 -+ 2.399204 18 7 11 18 30 TCGA-X6-A8C2-01A-11R-A36F-07 ALDH9A1~MGST3 fusion "ALDH9A1," "MGST3," chr1~chr1 165648679 165624605 5 -+ 1.332179 5 1 4 5 2 TCGA-X6-A8C2-01A-11R-A36F-07 ALDH9A1~NchrX~131264155 intergenic "ALDH9A1," "-," chr1~chrX 165648679 131264155 17 -+ 2.119281 17 7 10 17 18 TCGA-X6-A8C2-01A-11R-A36F-07 ARHGEF6~TMEM48 fusion "ARHGEF6," "TMEM48," chrX~chr1 135814261 54275419 4 -- 1.039721 4 2 2 4 8 TCGA-X6-A8C2-01A-11R-A36F-07 ASXL1~Nchr20~10825656 intergenic "ASXL1," "-," chr20~chr20 30956926 10825656 7 ++ 1.94591 7 3 4 7 10 TCGA-X6-A8C2-01A-11R-A36F-07 ATPBD4~COX5A fusion "ATPBD4," "COX5A," chr15~chr15 35703036 75212783 7 -- 1.549826 7 3 4 7 30 TCGA-X6-A8C2-01A-11R-A36F-07 BACH2~ERCC5 fusion "BACH2," "BIVM,ERCC5,BIVM," chr6~chr13 90916288 103468778 5 -+ 1.332179 5 2 3 5 4 TCGA-X6-A8C2-01A-11R-A36F-07 C1orf196~KAZN fusion "C1orf196," "KAZN," chr1~chr1 14507087 14925479 21 ++ 2.238941 10 7 3 10 22 TCGA-X6-A8C2-01A-11R-A36F-07 C1orf196~Nchr1~14823164 intergenic "C1orf196," "-," chr1~chr1 14507087 14823164 14 ++ 2.304619 9 5 4 9 26 TCGA-X6-A8C2-01A-11R-A36F-07 C1orf196~Nchr1~14858349 intergenic "C1orf196," "-," chr1~chr1 14507087 14858349 2 ++ 0.693147 2 0 2 2 4 TCGA-X6-A8C2-01A-11R-A36F-07 CACNB4~Nchr2~169200867 intergenic "CACNB4," "-," chr2~chr2 152739765 169200867 6 -- 1.329661 3 1 2 3 6 TCGA-X6-A8C2-01A-11R-A36F-07 CLTC~DNAH17 fusion "CLTC," "DNAH17," chr17~chr17 57697534 76511104 41 +- 1.879159 40 29 11 40 94 TCGA-X6-A8C2-01A-11R-A36F-07 CNKSR2~RP11-494I9.2 fusion "CNKSR2," "RP11-494I9.2," chrX~chrX 21393079 22507965 3 ++ 0.636514 2 2 0 2 4 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48265893 94034039 3 -+ 0.636514 3 3 0 3 48 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48265891 94034151 2 -+ 0.693147 2 2 0 2 28 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273675 94034985 6 -+ 1.56071 4 2 2 4 144 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48270158 94038082 5 -+ 1.332179 3 3 0 3 200 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94042395 5 -+ 1.609438 3 2 1 3 554 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48270001 94043534 2 -+ 0.693147 2 1 1 2 114 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272593 94047036 2 -+ 0.693147 2 1 1 2 52 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94047811 4 -+ 1.039721 3 3 0 3 318 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48265944 94048829 2 -+ 0.693147 1 1 0 1 90 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267040 94052269 7 -+ 1.747868 4 4 0 4 120 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266738 94053648 3 -+ 1.098612 2 0 2 2 138 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266335 94053721 2 -+ 0.693147 1 1 0 1 198 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94054429 9 -+ 1.21489 8 7 1 8 164 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272593 94054429 3 -+ 1.098612 1 1 0 1 42 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264845 94055310 5 -+ 0.950271 5 4 1 5 72 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48265891 94055310 4 -+ 1.039721 4 3 1 4 88 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272410 94055769 2 -+ 0.693147 2 1 1 2 36 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266546 94055790 2 -+ 0.693147 2 1 1 2 130 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48263319 94058563 3 -+ 1.098612 3 2 1 3 50 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48271934 189858960 4 -+ 0.562335 2 2 0 2 12 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266738 189859032 7 -+ 1.153742 5 4 1 5 68 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48269149 189859032 3 -+ 0.636514 3 3 0 3 10 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48273675 189859267 2 -+ 0.693147 2 0 2 2 16 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48273540 189860851 5 -+ 0.500402 4 3 1 4 16 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266264 189861891 3 -+ 1.098612 2 2 0 2 30 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266738 189861891 2 -+ 0.693147 2 1 1 2 18 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272795 189861891 2 -+ 0.693147 2 2 0 2 14 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266738 189868137 9 -+ 1.735126 6 6 0 6 20 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48271736 189870164 6 -+ 1.242453 4 4 0 4 16 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047143 48266371 4 +- 1.039721 4 0 4 4 20 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48266636 10 +- 1.834372 6 3 3 6 126 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047143 48268285 2 +- 0.693147 1 1 0 1 24 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94056607 48270054 10 +- 0.940448 5 4 1 5 220 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94037692 48270054 2 +- 0.693147 1 0 1 1 6 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94038920 48270408 8 +- 1.494175 1 0 1 1 14 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94038135 48271544 2 +- 0.693147 1 0 1 1 16 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94044556 48272170 4 +- 1.039721 4 0 4 4 70 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047864 48272691 2 +- 0.693147 2 0 2 2 28 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94056607 48273560 3 +- 1.098612 2 2 0 2 122 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48273560 27 +- 1.932149 17 2 15 17 184 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94042448 48273889 3 +- 0.636514 2 2 0 2 32 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94051247 48275127 2 +- 0.693147 1 0 1 1 94 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94043587 189859772 2 ++ 0.693147 2 1 1 2 10 TCGA-X6-A8C2-01A-11R-A36F-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94049598 189871071 5 ++ 0.500402 1 0 1 1 16 TCGA-X6-A8C2-01A-11R-A36F-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189864303 48265317 5 +- 1.609438 4 0 4 4 10 TCGA-X6-A8C2-01A-11R-A36F-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189871716 48265510 8 +- 1.386294 7 0 7 7 32 TCGA-X6-A8C2-01A-11R-A36F-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870985 48265998 3 +- 1.098612 3 1 2 3 24 TCGA-X6-A8C2-01A-11R-A36F-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189863444 48268285 3 +- 1.098612 3 0 3 3 4 TCGA-X6-A8C2-01A-11R-A36F-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189863418 48269183 4 +- 1.039721 3 0 3 3 14 TCGA-X6-A8C2-01A-11R-A36F-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189858808 48270054 5 +- 1.332179 3 0 3 3 4 TCGA-X6-A8C2-01A-11R-A36F-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189863444 48274004 2 +- 0.693147 1 1 0 1 14 TCGA-X6-A8C2-01A-11R-A36F-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189868804 94035596 2 ++ 0.693147 2 1 1 2 24 TCGA-X6-A8C2-01A-11R-A36F-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189870985 94042395 2 ++ 0.693147 2 2 0 2 8 TCGA-X6-A8C2-01A-11R-A36F-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189859557 94044538 2 ++ 0.693147 2 1 1 2 30 TCGA-X6-A8C2-01A-11R-A36F-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189869073 94045781 2 ++ 0.693147 2 1 1 2 20 TCGA-X6-A8C2-01A-11R-A36F-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189870985 94047036 2 ++ 0.693147 2 1 1 2 8 TCGA-X6-A8C2-01A-11R-A36F-07 EXTL3~Nchr8~130599555 intergenic "EXTL3," "-," chr8~chr8 28569891 130599555 2 ++ 0.693147 2 1 1 2 2 TCGA-X6-A8C2-01A-11R-A36F-07 GRAMD1A~Nchr8~78076994 intergenic "GRAMD1A," "-," chr19~chr8 35502458 78076994 29 ++ 2.327341 28 17 11 28 58 TCGA-X6-A8C2-01A-11R-A36F-07 HDHD1~Nchr2~147070904 intergenic "HDHD1," "-," chrX~chr2 7066094 147070904 10 -- 2.163956 7 5 2 7 22 TCGA-X6-A8C2-01A-11R-A36F-07 HDHD1~NchrX~7289914 intergenic "HDHD1," "-," chrX~chrX 7066094 7289914 5 -- 0.500402 1 0 1 1 8 TCGA-X6-A8C2-01A-11R-A36F-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 105 -- 2.341316 105 105 0 105 28 TCGA-X6-A8C2-01A-11R-A36F-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238905 31324034 2 -- 0.693147 2 2 0 2 6 TCGA-X6-A8C2-01A-11R-A36F-07 INTS9~Nchr8~29458705 intergenic "INTS9," "-," chr8~chr8 28651324 29458705 3 -+ 1.098612 3 1 2 3 6 TCGA-X6-A8C2-01A-11R-A36F-07 KDM4C~PSPH fusion "KDM4C," "PSPH," chr9~chr7 7049200 56101796 2 +- 0.693147 2 1 1 2 2 TCGA-X6-A8C2-01A-11R-A36F-07 KIAA0564~Nchr13~63167377 intergenic "KIAA0564," "-," chr13~chr13 42245082 63167377 3 -+ 0.636514 3 2 1 3 4 TCGA-X6-A8C2-01A-11R-A36F-07 LSAMP~Nchr3~116018482 intergenic "LSAMP," "-," chr3~chr3 115726132 116018482 2 ++ 0.693147 2 1 1 2 2 TCGA-X6-A8C2-01A-11R-A36F-07 LYRM7~SLC6A7 fusion "LYRM7," "SLC6A7," chr5~chr5 130506731 149574291 7 ++ 1.747868 5 0 5 5 2 TCGA-X6-A8C2-01A-11R-A36F-07 LZTS1~Nchr8~36235786 intergenic "LZTS1," "-," chr8~chr8 20161251 36235786 4 -- 1.039721 4 3 1 4 12 TCGA-X6-A8C2-01A-11R-A36F-07 MGST3~ALDH9A1 fusion "MGST3," "ALDH9A1," chr1~chr1 165601511 165638687 4 +- 1.386294 4 1 3 4 18 TCGA-X6-A8C2-01A-11R-A36F-07 MTFR1~LIG1 fusion "MTFR1," "LIG1," chr8~chr19 66605994 48647220 8 +- 1.213008 8 2 6 8 36 TCGA-X6-A8C2-01A-11R-A36F-07 MTMR12~MAEL fusion "MTMR12," "MAEL," chr5~chr1 32312864 166961923 13 -+ 2.458311 12 9 3 12 76 TCGA-X6-A8C2-01A-11R-A36F-07 NFATC2IP~KIAA0556 fusion "NFATC2IP," "KIAA0556," chr16~chr16 28963525 27760905 3 ++ 1.098612 2 1 1 2 8 TCGA-X6-A8C2-01A-11R-A36F-07 NUF2~Nchr1~165336572 intergenic "NUF2," "-," chr1~chr1 163298094 165336572 17 ++ 1.956187 16 8 8 16 54 TCGA-X6-A8C2-01A-11R-A36F-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 28 -+ 2.342634 17 0 17 17 12 TCGA-X6-A8C2-01A-11R-A36F-07 Nchr11~93922106~ARPC3 intergenic "-," "ARPC3," chr11~chr12 93922106 110888131 2 +- 0.693147 2 0 2 2 8 TCGA-X6-A8C2-01A-11R-A36F-07 Nchr14~58448631~SLC35F4 intergenic "-," "SLC35F4," chr14~chr14 58448631 58060842 7 -- 1.747868 7 5 2 7 10 TCGA-X6-A8C2-01A-11R-A36F-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 3 ++ 1.098612 3 2 1 3 8 TCGA-X6-A8C2-01A-11R-A36F-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 5 ++ 1.332179 3 1 2 3 4 TCGA-X6-A8C2-01A-11R-A36F-07 Nchr19~47364466~Nchr8~129267590 intergenic "-," "-," chr19~chr8 47364466 129267590 5 ++ 0.950271 5 4 1 5 80 TCGA-X6-A8C2-01A-11R-A36F-07 Nchr19~47364466~Nchr8~129268254 intergenic "-," "-," chr19~chr8 47364466 129268254 32 ++ 2.766856 31 2 29 31 76 TCGA-X6-A8C2-01A-11R-A36F-07 Nchr19~47364466~Nchr8~129398257 intergenic "-," "-," chr19~chr8 47364466 129398257 5 ++ 1.332179 4 0 4 4 4 TCGA-X6-A8C2-01A-11R-A36F-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 18 -+ 2.447151 17 6 11 17 154 TCGA-X6-A8C2-01A-11R-A36F-07 Nchr20~41791233~PTPRT intergenic "-," "PTPRT," chr20~chr20 41791233 41514572 3 -- 0.636514 1 1 0 1 14 TCGA-X6-A8C2-01A-11R-A36F-07 Nchr2~81775871~Nchr2~82024942 intergenic "-," "-," chr2~chr2 81775871 82024942 6 ++ 1.56071 6 2 4 6 6 TCGA-X6-A8C2-01A-11R-A36F-07 Nchr3~115510005~LSAMP intergenic "-," "LSAMP," chr3~chr3 115510005 115725983 4 ++ 1.386294 3 1 2 3 8 TCGA-X6-A8C2-01A-11R-A36F-07 Nchr3~18105554~Nchr3~18308510 intergenic "-," "-," chr3~chr3 18105554 18308510 3 ++ 0.636514 3 3 0 3 2 TCGA-X6-A8C2-01A-11R-A36F-07 Nchr7~93873590~COL1A2 intergenic "-," "COL1A2," chr7~chr7 93873590 94039996 12 -- 1.979205 12 2 10 12 36 TCGA-X6-A8C2-01A-11R-A36F-07 Nchr8~92498656~RP11-122C21.1 intergenic "-," "RP11-122C21.1," chr8~chr8 92498656 92784075 2 ++ 0.693147 2 2 0 2 10 TCGA-X6-A8C2-01A-11R-A36F-07 NchrX~36982319~NchrX~36698022 intergenic "-," "-," chrX~chrX 36982319 36698022 4 -- 1.039721 4 0 4 4 18 TCGA-X6-A8C2-01A-11R-A36F-07 POLD1~Nchr8~80154895 intergenic "POLD1," "-," chr19~chr8 50910672 80154895 12 ++ 1.907284 12 3 9 12 20 TCGA-X6-A8C2-01A-11R-A36F-07 PRRC2A~Nchr6~41122083 intergenic "PRRC2A," "-," chr6~chr6 31588635 41122083 3 +- 1.098612 3 0 3 3 2 TCGA-X6-A8C2-01A-11R-A36F-07 PRRC2A~TREM2 fusion "PRRC2A," "TREM2," chr6~chr6 31588635 41127620 6 +- 1.329661 6 2 4 6 22 TCGA-X6-A8C2-01A-11R-A36F-07 PRRC2A~TREM2 fusion "PRRC2A," "TREM2," chr6~chr6 31588635 41129351 13 +- 1.732659 11 7 4 11 24 TCGA-X6-A8C2-01A-11R-A36F-07 RACGAP1~Nchr12~58797689 intergenic "RACGAP1," "-," chr12~chr12 50392924 58797689 3 -- 1.098612 3 1 2 3 8 TCGA-X6-A8C2-01A-11R-A36F-07 RACGAP1~Nchr12~58804404 intergenic "RACGAP1," "-," chr12~chr12 50392924 58804404 3 -- 1.098612 2 1 1 2 16 TCGA-X6-A8C2-01A-11R-A36F-07 RACGAP1~Nchr12~58816253 intergenic "RACGAP1," "-," chr12~chr12 50392924 58816253 14 -- 2.205598 13 4 9 13 24 TCGA-X6-A8C2-01A-11R-A36F-07 RP1-34H18.1~NAV3 fusion "RP1-34H18.1," "NAV3," chr12~chr12 77966046 78334099 4 ++ 1.039721 2 2 0 2 12 TCGA-X6-A8C2-01A-11R-A36F-07 RP11-473O4.5~Nchr19~36652076 intergenic "RP11-473O4.5," "-," chr8~chr19 130852313 36652076 5 +- 1.332179 4 1 3 4 4 TCGA-X6-A8C2-01A-11R-A36F-07 SCAMP2~SLCO3A1 fusion "SCAMP2," "SLCO3A1," chr15~chr15 75165540 92617489 7 -+ 1.747868 6 2 4 6 30 TCGA-X6-A8C2-01A-11R-A36F-07 STAG2~RP11-563N12.1 fusion "STAG2," "RP11-563N12.1," chrX~chr8 123164975 20146720 12 ++ 2.022809 12 7 5 12 10 TCGA-X6-A8C2-01A-11R-A36F-07 TANK~CACNB4 fusion "TANK," "CACNB4," chr2~chr2 162016997 152739884 4 +- 1.386294 3 0 3 3 6 TCGA-X6-A8C2-01A-11R-A36F-07 TANK~CACNB4 fusion "TANK," "CACNB4," chr2~chr2 162016995 152739884 4 +- 1.039721 2 2 0 2 4 TCGA-X6-A8C2-01A-11R-A36F-07 TNFAIP6~ORC4 fusion "TNFAIP6," "ORC4," chr2~chr2 152214274 148693267 2 +- 0.693147 2 1 1 2 8 TCGA-X6-A8C2-01A-11R-A36F-07 TNFAIP6~ORC4 fusion "TNFAIP6," "ORC4," chr2~chr2 152214274 148695962 8 +- 1.906155 8 5 3 8 34 TCGA-X6-A8C2-01A-11R-A36F-07 TOP1MT~Nchr8~90211216 intergenic "TOP1MT," "-," chr8~chr8 144411520 90211216 2 -+ 0.693147 2 1 1 2 4 TCGA-X6-A8C2-01A-11R-A36F-07 UCKL1~Nchr20~53885122 intergenic "UCKL1," "-," chr20~chr20 62587613 53885122 11 -+ 1.767761 10 3 7 10 16 TCGA-X6-A8C2-01A-11R-A36F-07 UCKL1~Nchr20~53955331 intergenic "UCKL1," "-," chr20~chr20 62587613 53955331 3 -+ 0.636514 2 1 1 2 12 TCGA-X6-A8C2-01A-11R-A36F-07 ZNF354B~Nchr17~50502088 intergenic "ZNF354B," "-," chr5~chr17 178294072 50502088 20 ++ 1.943378 20 15 5 20 30 TCGA-X6-A8C2-01A-11R-A36F-07 ZNF595~RAB28 fusion "ZNF595," "RAB28," chr4~chr4 53385 13383218 11 +- 2.271869 11 6 5 11 10 TCGA-X6-A8C3-01A-11R-A36F-07 C11orf58~Nchr11~45063088 intergenic "C11orf58," "-," chr11~chr11 16766231 45063088 7 ++ 1.94591 6 3 3 6 20 TCGA-X6-A8C3-01A-11R-A36F-07 C11orf58~Nchr11~45065246 intergenic "C11orf58," "-," chr11~chr11 16766231 45065246 2 ++ 0.693147 2 1 1 2 6 TCGA-X6-A8C3-01A-11R-A36F-07 CD97~Nchr1~249229631 intergenic "CD97," "-," chr19~chr1 14492357 249229631 15 +- 2.430791 6 3 3 6 16 TCGA-X6-A8C3-01A-11R-A36F-07 CPNE8~Nchr12~38473865 intergenic "CPNE8," "-," chr12~chr12 39161437 38473865 48 -+ 2.863826 43 15 27 43 98 TCGA-X6-A8C3-01A-11R-A36F-07 CPNE8~Nchr12~38475860 intergenic "CPNE8," "-," chr12~chr12 39161437 38475860 3 -+ 1.098612 3 2 1 3 16 TCGA-X6-A8C3-01A-11R-A36F-07 DDB1~Nchr11~58662639 intergenic "DDB1," "-," chr11~chr11 61093083 58662639 12 -- 2.138333 12 4 8 12 12 TCGA-X6-A8C3-01A-11R-A36F-07 DDB1~Nchr11~58663099 intergenic "DDB1," "-," chr11~chr11 61093083 58663099 40 -- 2.566485 40 19 21 40 70 TCGA-X6-A8C3-01A-11R-A36F-07 DDB1~Nchr11~58664667 intergenic "DDB1," "-," chr11~chr11 61093083 58664667 8 -- 1.559581 8 4 4 8 84 TCGA-X6-A8C3-01A-11R-A36F-07 ENOSF1~PPT1 fusion "ENOSF1," "PPT1," chr18~chr1 706470 40558179 45 -- 2.66147 44 27 16 44 132 TCGA-X6-A8C3-01A-11R-A36F-07 ENOSF1~PPT1 fusion "ENOSF1," "PPT1," chr18~chr1 712504 40558179 13 -- 2.204785 13 9 4 13 74 TCGA-X6-A8C3-01A-11R-A36F-07 FAM168A~OSBPL5 fusion "FAM168A," "OSBPL5," chr11~chr11 73179450 3140861 2 -- 0.693147 2 0 2 2 2 TCGA-X6-A8C3-01A-11R-A36F-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31236793 31321968 3 -- 1.098612 3 2 1 3 14 TCGA-X6-A8C3-01A-11R-A36F-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238854 31324034 12 -- 0.286836 12 2 10 12 56 TCGA-X6-A8C3-01A-11R-A36F-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32486403 32548633 4 -- 1.039721 2 1 1 2 294 TCGA-X6-A8C3-01A-11R-A36F-07 MACF1~SHISA6 fusion "MACF1," "SHISA6," chr1~chr17 39723700 11282731 8 ++ 1.667462 7 4 3 7 18 TCGA-X6-A8C3-01A-11R-A36F-07 MTCH2~Nchr11~37755554 intergenic "MTCH2," "-," chr11~chr11 47660251 37755554 7 -- 1.747868 7 1 6 7 30 TCGA-X6-A8C3-01A-11R-A36F-07 MTCH2~Nchr11~37763383 intergenic "MTCH2," "-," chr11~chr11 47660251 37763383 10 -- 2.163956 9 3 6 9 90 TCGA-X6-A8C3-01A-11R-A36F-07 MTCH2~Nchr11~37764292 intergenic "MTCH2," "-," chr11~chr11 47660251 37764292 20 -- 2.42548 21 11 9 21 168 TCGA-X6-A8C3-01A-11R-A36F-07 MTCH2~Nchr11~37764310 intergenic "MTCH2," "-," chr11~chr11 47660251 37764310 20 -- 1.98653 20 12 8 20 208 TCGA-X6-A8C3-01A-11R-A36F-07 NLRP14~Nchr11~57219134 intergenic "NLRP14," "-," chr11~chr11 7091687 57219134 15 ++ 1.806507 15 9 6 15 24 TCGA-X6-A8C3-01A-11R-A36F-07 NOP56~Nchr12~79952582 intergenic "NOP56,NOP56," "-," chr20~chr12 2637857 79952582 8 ++ 1.494175 4 1 3 4 8 TCGA-X6-A8C3-01A-11R-A36F-07 Nchr11~25633980~FADS2 intergenic "-," "FADS2," chr11~chr11 25633980 61605250 4 ++ 0.562335 4 1 3 4 6 TCGA-X6-A8C3-01A-11R-A36F-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 70 -+ 2.4129 39 0 39 39 8 TCGA-X6-A8C3-01A-11R-A36F-07 Nchr12~43243319~Nchr12~43446586 intergenic "-," "-," chr12~chr12 43243319 43446586 4 ++ 1.386294 4 1 3 4 8 TCGA-X6-A8C3-01A-11R-A36F-07 Nchr12~47413769~SLC38A4 intergenic "-," "SLC38A4," chr12~chr12 47413769 47186966 5 -- 1.609438 5 1 4 5 10 TCGA-X6-A8C3-01A-11R-A36F-07 Nchr12~47413769~SLC38A4 intergenic "-," "SLC38A4," chr12~chr12 47413769 47197577 4 -- 1.386294 4 1 3 4 12 TCGA-X6-A8C3-01A-11R-A36F-07 Nchr15~21905473~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21905473 20876597 11 -- 1.972247 10 1 9 10 128 TCGA-X6-A8C3-01A-11R-A36F-07 Nchr15~21905477~NBEA intergenic "-," "NBEA," chr15~chr13 21905477 35683427 13 -+ 1.484458 13 13 0 13 72 TCGA-X6-A8C3-01A-11R-A36F-07 Nchr15~21905477~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21905477 20876597 65 -- 2.965557 65 26 39 65 122 TCGA-X6-A8C3-01A-11R-A36F-07 Nchr17~22069241~Nchr15~20876597 intergenic "-," "-," chr17~chr15 22069241 20876597 4 -- 0.562335 4 4 0 4 6 TCGA-X6-A8C3-01A-11R-A36F-07 Nchr18~2235546~Nchr18~2035148 intergenic "-," "-," chr18~chr18 2235546 2035148 2 -- 0.693147 2 1 1 2 14 TCGA-X6-A8C3-01A-11R-A36F-07 Nchr18~2239793~Nchr18~2035148 intergenic "-," "-," chr18~chr18 2239793 2035148 9 -- 2.197225 9 7 2 9 16 TCGA-X6-A8C3-01A-11R-A36F-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 46 -+ 2.738612 43 29 14 43 170 TCGA-X6-A8C3-01A-11R-A36F-07 Nchr3~27065268~LRRC3B intergenic "-," "LRRC3B," chr3~chr3 27065268 26715443 6 -- 1.329661 6 6 0 6 10 TCGA-X6-A8C3-01A-11R-A36F-07 Nchr5~33162662~Nchr5~33162860 intergenic "-," "-," chr5~chr5 33162662 33162860 4 -- 1.039721 2 2 0 2 2 TCGA-X6-A8C3-01A-11R-A36F-07 Nchr7~66147245~C7orf58 intergenic "-," "C7orf58," chr7~chr7 66147245 120655719 4 ++ 1.039721 4 0 4 4 10 TCGA-X6-A8C3-01A-11R-A36F-07 Nchr7~66165836~C7orf58 intergenic "-," "C7orf58," chr7~chr7 66165836 120655719 2 ++ 0.693147 2 2 0 2 18 TCGA-X6-A8C3-01A-11R-A36F-07 Nchr7~66177211~C7orf58 intergenic "-," "C7orf58," chr7~chr7 66177211 120655719 10 ++ 2.163956 9 3 6 9 26 TCGA-X6-A8C3-01A-11R-A36F-07 PRPF19~NLRP14 fusion "PRPF19," "NLRP14," chr11~chr11 60668054 7059797 16 -+ 2.187322 16 10 6 16 14 TCGA-X6-A8C3-01A-11R-A36F-07 RFX7~PCSK6 fusion "RFX7," "PCSK6," chr15~chr15 56535323 101872236 3 -- 1.098612 2 0 2 2 8 TCGA-X6-A8C3-01A-11R-A36F-07 RORA~LOXL1 fusion "RORA," "LOXL1," chr15~chr15 60884586 74235195 55 -+ 2.48167 54 15 39 54 130 TCGA-X6-A8C3-01A-11R-A36F-07 RORA~LOXL1 fusion "RORA," "LOXL1," chr15~chr15 60884586 74239408 2 -+ 0.693147 2 1 1 2 6 TCGA-X6-A8C3-01A-11R-A36F-07 RP11-286N22.8~TPH1 fusion "RP11-286N22.8,SDHAF2,RP11-286N22.8,SDHAF2,RP11-286N22.8,SDHAF2," "TPH1," chr11~chr11 61205585 18062335 4 +- 1.386294 4 2 2 4 14 TCGA-X6-A8C3-01A-11R-A36F-07 RPL11~Nchr5~130325996 intergenic "RPL11," "-," chr1~chr5 24020385 130325996 2 -- 0.693147 2 2 0 2 2 TCGA-X6-A8C3-01A-11R-A36F-07 ST5~C11orf89 fusion "ST5,ST5," "C11orf89," chr11~chr11 8832064 1911823 4 -- 1.386294 4 3 1 4 8 TCGA-X6-A8C3-01A-11R-A36F-07 TEAD1~CTD-3138F19.1 fusion "TEAD1," "CTD-3138F19.1," chr11~chr11 12697108 29903029 15 ++ 1.93381 15 12 3 15 40 TCGA-DX-A7ET-01A-11R-A36F-07 BEST1~Nchr11~77445551 intergenic "BEST1,FTH1," "-," chr11~chr11 61732197 77445551 3 -- 0.636514 3 3 0 3 64 TCGA-DX-A7ET-01A-11R-A36F-07 C19orf12~Nchr9~33617682 intergenic "C19orf12," "-," chr19~chr9 30206032 33617682 6 -+ 1.791759 6 2 4 6 18 TCGA-DX-A7ET-01A-11R-A36F-07 EHD2~AATF fusion "EHD2," "AATF," chr19~chr17 48229481 35413901 3 ++ 0.636514 3 1 2 3 4 TCGA-DX-A7ET-01A-11R-A36F-07 FOXP4~Nchr6~47012800 intergenic "FOXP4," "-," chr6~chr6 41514605 47012800 30 +- 2.311541 29 0 29 29 2 TCGA-DX-A7ET-01A-11R-A36F-07 FOXP4~Nchr6~47014411 intergenic "FOXP4," "-," chr6~chr6 41514605 47014411 14 +- 1.809514 11 0 11 11 6 TCGA-DX-A7ET-01A-11R-A36F-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31236793 31321968 3 -- 1.098612 3 3 0 3 68 TCGA-DX-A7ET-01A-11R-A36F-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32486367 32548633 2 -- 0.693147 2 1 1 2 312 TCGA-DX-A7ET-01A-11R-A36F-07 KIF16B~MLIP fusion "KIF16B," "MLIP,RP11-411K7.1," chr20~chr6 16474936 53847556 10 -+ 1.497866 9 6 3 9 4 TCGA-DX-A7ET-01A-11R-A36F-07 MLL3~PRKAG2 fusion "MLL3," "PRKAG2," chr7~chr7 152007051 151532195 6 -- 0.867563 6 6 0 6 2 TCGA-DX-A7ET-01A-11R-A36F-07 MLL3~PRKAG2 fusion "MLL3," "PRKAG2," chr7~chr7 152007051 151534581 147 -- 3.025076 139 72 67 139 258 TCGA-DX-A7ET-01A-11R-A36F-07 MLL3~PRKAG2 fusion "MLL3," "PRKAG2," chr7~chr7 152007051 151535168 11 -- 1.46814 11 3 8 11 184 TCGA-DX-A7ET-01A-11R-A36F-07 MLL3~PRKAG2 fusion "MLL3," "PRKAG2," chr7~chr7 152007051 151535241 5 -- 1.05492 4 4 0 4 28 TCGA-DX-A7ET-01A-11R-A36F-07 NIPA2~Nchr4~60826358 intergenic "NIPA2," "-," chr15~chr4 23019800 60826358 8 -- 1.667462 8 1 7 8 12 TCGA-DX-A7ET-01A-11R-A36F-07 NIPA2~Nchr4~60826358 intergenic "NIPA2," "-," chr15~chr4 23021198 60826358 8 -- 0.900256 8 0 8 8 10 TCGA-DX-A7ET-01A-11R-A36F-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 180 -+ 2.612824 84 0 84 84 112 TCGA-DX-A7ET-01A-11R-A36F-07 Nchr13~53171308~Nchr13~52915028 intergenic "-," "-," chr13~chr13 53171308 52915028 3 -+ 0.636514 3 0 3 3 6 TCGA-DX-A7ET-01A-11R-A36F-07 Nchr16~79619777~Nchr16~79246798 intergenic "-," "-," chr16~chr16 79619777 79246798 4 -- 0.693147 4 2 2 4 6 TCGA-DX-A7ET-01A-11R-A36F-07 Nchr18~20279534~Nchr18~20056329 intergenic "-," "-," chr18~chr18 20279534 20056329 2 -- 0.693147 1 0 1 1 4 TCGA-DX-A7ET-01A-11R-A36F-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 13 -+ 1.778233 13 6 7 13 156 TCGA-DX-A7ET-01A-11R-A36F-07 Nchr21~17554007~Nchr21~17558410 intergenic "-," "-," chr21~chr21 17554007 17558410 7 +- 1.549826 5 4 1 5 12 TCGA-DX-A7ET-01A-11R-A36F-07 Nchr21~9827382~Nchr21~9827481 intergenic "-," "-," chr21~chr21 9827382 9827481 4 -- 1.039721 4 4 0 4 28 TCGA-DX-A7ET-01A-11R-A36F-07 Nchr2~177065789~Nchr2~177065913 intergenic "-," "-," chr2~chr2 177065789 177065913 4 -- 1.386294 4 0 4 4 6 TCGA-DX-A7ET-01A-11R-A36F-07 Nchr2~177065909~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065909 177065788 5 ++ 0.673012 5 0 5 5 4 TCGA-DX-A7ET-01A-11R-A36F-07 Nchr3~142897974~Nchr3~142897816 intergenic "-," "-," chr3~chr3 142897974 142897816 2 ++ 0.693147 2 1 1 2 6 TCGA-DX-A7ET-01A-11R-A36F-07 ZNF571~Nchr5~85440030 intergenic "ZNF571," "-," chr19~chr5 38074872 85440030 2 -- 0.693147 2 0 2 2 2 TCGA-DX-A7EU-01A-22R-A36F-07 AC011497.1~Nchr19~43155239 intergenic "AC011497.1," "-," chr19~chr19 42929356 43155239 11 ++ 2.145842 10 7 3 10 10 TCGA-DX-A7EU-01A-22R-A36F-07 ARRB1~LY9 fusion "ARRB1," "LY9," chr11~chr1 75062632 160783426 11 -+ 2.145842 11 10 1 11 18 TCGA-DX-A7EU-01A-22R-A36F-07 ASAP1~RP11-30J20.1 fusion "ASAP1," "RP11-30J20.1," chr8~chr8 131164982 137767960 5 -+ 1.609438 5 3 2 5 6 TCGA-DX-A7EU-01A-22R-A36F-07 BBS9~Nchr7~33900207 intergenic "BBS9," "-," chr7~chr7 33644587 33900207 3 ++ 1.098612 1 0 1 1 4 TCGA-DX-A7EU-01A-22R-A36F-07 CA6~RER1 fusion "CA6," "RER1," chr1~chr1 9009501 2334474 3 ++ 1.098612 3 3 0 3 4 TCGA-DX-A7EU-01A-22R-A36F-07 COL4A2~Nchr10~6788025 intergenic "COL4A2," "-," chr13~chr10 111086789 6788025 4 +- 1.386294 3 0 3 3 12 TCGA-DX-A7EU-01A-22R-A36F-07 DPP3~FAM163A fusion "DPP3," "FAM163A," chr11~chr1 66249941 179776933 4 ++ 1.386294 4 0 4 4 6 TCGA-DX-A7EU-01A-22R-A36F-07 DVL1~PLCH2 fusion "DVL1," "PLCH2," chr1~chr1 1273357 2433551 4 -+ 1.039721 4 3 1 4 12 TCGA-DX-A7EU-01A-22R-A36F-07 DYNC2LI1~KCNN3 fusion "DYNC2LI1," "KCNN3," chr2~chr1 44010693 154698502 2 +- 0.693147 2 2 0 2 22 TCGA-DX-A7EU-01A-22R-A36F-07 ENO1~TAS1R1 fusion "ENO1," "TAS1R1," chr1~chr1 8928047 6639102 129 -+ 3.023443 116 55 58 116 366 TCGA-DX-A7EU-01A-22R-A36F-07 ENO1~TAS1R1 fusion "ENO1," "TAS1R1," chr1~chr1 8928047 6639356 9 -+ 1.83102 7 5 2 7 48 TCGA-DX-A7EU-01A-22R-A36F-07 FAM163A~Nchr11~76509377 intergenic "FAM163A," "-," chr1~chr11 179778310 76509377 20 +- 2.415052 20 7 13 20 12 TCGA-DX-A7EU-01A-22R-A36F-07 FAM38B~Nchr11~37557629 intergenic "FAM38B," "-," chr18~chr11 10784782 37557629 8 -+ 1.906155 7 0 7 7 36 TCGA-DX-A7EU-01A-22R-A36F-07 IMPACT~Nchr18~30134317 intergenic "IMPACT," "-," chr18~chr18 22025430 30134317 4 +- 1.386294 4 2 2 4 12 TCGA-DX-A7EU-01A-22R-A36F-07 IMPACT~Nchr18~30134317 intergenic "IMPACT," "-," chr18~chr18 22023116 30134317 4 +- 0.562335 4 3 1 4 10 TCGA-DX-A7EU-01A-22R-A36F-07 IMPACT~Nchr18~30149074 intergenic "IMPACT," "-," chr18~chr18 22025430 30149074 7 +- 1.94591 6 6 0 6 24 TCGA-DX-A7EU-01A-22R-A36F-07 KIFAP3~BRP44 fusion "KIFAP3," "BRP44," chr1~chr1 169923152 167893775 11 -- 2.271869 11 6 5 11 48 TCGA-DX-A7EU-01A-22R-A36F-07 LONP2~Nchr6~62236707 intergenic "LONP2," "-," chr16~chr6 48337216 62236707 7 ++ 1.549826 6 3 3 6 16 TCGA-DX-A7EU-01A-22R-A36F-07 LTBP1~Nchr2~37570983 intergenic "LTBP1," "-," chr2~chr2 33540336 37570983 56 +- 2.32099 54 29 25 54 192 TCGA-DX-A7EU-01A-22R-A36F-07 LUZP1~Nchr1~6962974 intergenic "LUZP1," "-," chr1~chr1 23420823 6962974 10 -- 1.834372 10 4 6 10 10 TCGA-DX-A7EU-01A-22R-A36F-07 MARCKS~Nchr6~114098411 intergenic "MARCKS," "-," chr6~chr6 114179023 114098411 13 ++ 2.245035 13 6 7 13 28 TCGA-DX-A7EU-01A-22R-A36F-07 MEG3~AKAP6 fusion "MEG3," "AKAP6," chr14~chr14 101302637 33004760 8 ++ 1.732868 8 2 6 8 22 TCGA-DX-A7EU-01A-22R-A36F-07 Nchr11~10209896~Nchr11~13988420 intergenic "-," "-," chr11~chr11 10209896 13988420 2 -- 0.693147 2 2 0 2 112 TCGA-DX-A7EU-01A-22R-A36F-07 Nchr11~13984689~SBF2 intergenic "-," "SBF2," chr11~chr11 13984689 10064528 2 +- 0.693147 1 1 0 1 6 TCGA-DX-A7EU-01A-22R-A36F-07 Nchr11~27603245~RPS25 intergenic "-," "RPS25," chr11~chr11 27603245 118889038 7 -- 1.747868 4 1 3 4 216 TCGA-DX-A7EU-01A-22R-A36F-07 Nchr11~47213097~RPS20 intergenic "-," "RPS20," chr11~chr8 47213097 56986962 2 +- 0.693147 1 0 1 1 48 TCGA-DX-A7EU-01A-22R-A36F-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 101 -+ 2.631251 51 0 51 51 20 TCGA-DX-A7EU-01A-22R-A36F-07 Nchr14~106444660~Nchr14~106444858 intergenic "-," "-," chr14~chr14 106444660 106444858 2 -- 0.693147 2 0 2 2 2 TCGA-DX-A7EU-01A-22R-A36F-07 Nchr14~21923108~TG intergenic "-," "TG," chr14~chr8 21923108 134144056 2 -+ 0.693147 2 0 2 2 10 TCGA-DX-A7EU-01A-22R-A36F-07 Nchr14~21924191~TG intergenic "-," "TG," chr14~chr8 21924191 134144056 256 -+ 2.912971 246 5 241 246 222 TCGA-DX-A7EU-01A-22R-A36F-07 Nchr14~21924191~TG intergenic "-," "TG," chr14~chr8 21924191 134145714 7 -+ 1.475076 7 0 7 7 50 TCGA-DX-A7EU-01A-22R-A36F-07 Nchr14~21924237~TG intergenic "-," "TG," chr14~chr8 21924237 134144056 8 -+ 1.906155 8 1 7 8 4 TCGA-DX-A7EU-01A-22R-A36F-07 Nchr14~27312862~TMEM181 intergenic "-," "TMEM181," chr14~chr6 27312862 158981978 4 +- 1.386294 2 2 0 2 2 TCGA-DX-A7EU-01A-22R-A36F-07 Nchr19~35158854~RP11-398G24.2 intergenic "-," "RP11-398G24.2," chr19~chr8 35158854 123120744 6 -+ 1.56071 6 2 4 6 6 TCGA-DX-A7EU-01A-22R-A36F-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 42 -+ 2.498664 40 23 16 40 234 TCGA-DX-A7EU-01A-22R-A36F-07 Nchr1~171639683~Nchr1~171639790 intergenic "-," "-," chr1~chr1 171639683 171639790 5 -- 1.609438 4 2 2 4 8 TCGA-DX-A7EU-01A-22R-A36F-07 Nchr20~47895671~Nchr20~47897072 intergenic "-," "-," chr20~chr20 47895671 47897072 2 -- 0.693147 2 1 1 2 2 TCGA-DX-A7EU-01A-22R-A36F-07 Nchr2~81775871~Nchr2~82049394 intergenic "-," "-," chr2~chr2 81775871 82049394 4 ++ 1.039721 4 1 3 4 36 TCGA-DX-A7EU-01A-22R-A36F-07 Nchr2~81775871~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81775871 82075877 24 ++ 2.556827 21 10 11 21 30 TCGA-DX-A7EU-01A-22R-A36F-07 Nchr7~47195403~Nchr7~46983740 intergenic "-," "-," chr7~chr7 47195403 46983740 3 -- 1.098612 3 2 1 3 2 TCGA-DX-A7EU-01A-22R-A36F-07 Nchr9~33624554~Nchr9~33624733 intergenic "-," "-," chr9~chr9 33624554 33624733 2 -- 0.693147 2 2 0 2 4 TCGA-DX-A7EU-01A-22R-A36F-07 OST4~EIF2B4 fusion "OST4," "EIF2B4," chr2~chr2 27293557 27592786 2 -- 0.693147 2 2 0 2 12 TCGA-DX-A7EU-01A-22R-A36F-07 PAMR1~Nchr18~11310278 intergenic "PAMR1," "-," chr11~chr18 35496178 11310278 17 -- 2.507026 17 7 10 17 44 TCGA-DX-A7EU-01A-22R-A36F-07 PAMR1~Nchr18~11337067 intergenic "PAMR1," "-," chr11~chr18 35496178 11337067 4 -- 1.386294 4 2 2 4 52 TCGA-DX-A7EU-01A-22R-A36F-07 PAMR1~Nchr18~11368651 intergenic "PAMR1," "-," chr11~chr18 35496178 11368651 42 -- 2.459674 42 31 11 42 86 TCGA-DX-A7EU-01A-22R-A36F-07 PAMR1~Nchr18~11378405 intergenic "PAMR1," "-," chr11~chr18 35496178 11378405 22 -- 2.239746 22 13 9 22 94 TCGA-DX-A7EU-01A-22R-A36F-07 PAMR1~Nchr18~11390491 intergenic "PAMR1," "-," chr11~chr18 35496178 11390491 5 -- 1.609438 5 4 1 5 10 TCGA-DX-A7EU-01A-22R-A36F-07 PAMR1~Nchr18~11527849 intergenic "PAMR1," "-," chr11~chr18 35496178 11527849 8 -- 1.494175 8 7 1 8 28 TCGA-DX-A7EU-01A-22R-A36F-07 PDE7A~Nchr6~110189241 intergenic "PDE7A," "-," chr8~chr6 66753606 110189241 3 -- 0.636514 3 1 2 3 4 TCGA-DX-A7EU-01A-22R-A36F-07 PELI3~Nchr2~35318413 intergenic "PELI3," "-," chr11~chr2 66241396 35318413 4 ++ 1.386294 4 0 4 4 26 TCGA-DX-A7EU-01A-22R-A36F-07 PPM1G~KATNA1 fusion "PPM1G," "KATNA1," chr2~chr6 27632170 149919486 25 -- 2.188547 25 6 19 25 56 TCGA-DX-A7EU-01A-22R-A36F-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 4 ++ 1.039721 3 1 2 3 6 TCGA-DX-A7EU-01A-22R-A36F-07 SBF2~Nchr11~13988382 intergenic "SBF2," "-," chr11~chr11 10215449 13988382 2 -- 0.693147 2 1 1 2 50 TCGA-DX-A7EU-01A-22R-A36F-07 SBF2~Nchr11~13988420 intergenic "SBF2," "-," chr11~chr11 10215449 13988420 76 -- 2.959445 62 27 35 62 106 TCGA-DX-A7EU-01A-22R-A36F-07 SKI~CAPZB fusion "SKI," "CAPZB," chr1~chr1 2161174 19746244 26 +- 2.598143 25 9 16 25 36 TCGA-DX-A7EU-01A-22R-A36F-07 STRN3~Nchr8~75078260 intergenic "STRN3," "-," chr14~chr8 31495110 75078260 4 -+ 1.039721 4 1 3 4 6 TCGA-DX-A7EU-01A-22R-A36F-07 STRN3~RP1-16A9.1 fusion "STRN3," "RP1-16A9.1," chr14~chr8 31495110 75119956 16 -+ 2.100679 15 8 7 15 10 TCGA-DX-A7EU-01A-22R-A36F-07 STRN3~RP11-6I2.3 fusion "STRN3," "RP11-6I2.3," chr14~chr8 31495110 75011654 9 -+ 1.676988 9 5 4 9 8 TCGA-DX-A7EU-01A-22R-A36F-07 TMEM181~Nchr14~27307672 intergenic "TMEM181," "-," chr6~chr14 158982405 27307672 5 +- 1.332179 4 0 4 4 28 TCGA-DX-A7EU-01A-22R-A36F-07 TMEM181~Nchr14~27307672 intergenic "TMEM181," "-," chr6~chr14 158981264 27307672 15 +- 2.176186 14 14 0 14 14 TCGA-DX-A7EU-01A-22R-A36F-07 TMEM181~Nchr14~27312472 intergenic "TMEM181," "-," chr6~chr14 158981264 27312472 11 +- 2.019815 10 10 0 10 16 TCGA-DX-A7EU-01A-22R-A36F-07 TMEM181~Nchr14~27313859 intergenic "TMEM181," "-," chr6~chr14 158981264 27313859 11 +- 1.767761 11 11 0 11 18 TCGA-DX-A7EU-01A-22R-A36F-07 TPST1~GS1-124K5.4 fusion "TPST1," "GS1-124K5.4," chr7~chr7 65751696 65960242 4 ++ 1.039721 4 1 3 4 16 TCGA-DX-A7EU-01A-22R-A36F-07 ZNF782~RP11-547C13.1 fusion "ZNF782," "RP11-547C13.1," chr9~chr9 99607172 102298905 4 -+ 1.039721 4 4 0 4 6 TCGA-DX-A7ER-01A-11R-A36F-07 NOP56~Nchr12~79952582 intergenic "NOP56,NOP56," "-," chr20~chr12 2637857 79952582 3 ++ 1.098612 2 0 2 2 4 TCGA-DX-A7ER-01A-11R-A36F-07 Nchr10~86320576~Nchr10~86320784 intergenic "-," "-," chr10~chr10 86320576 86320784 8 -- 1.732868 8 8 0 8 14 TCGA-DX-A7ER-01A-11R-A36F-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 107 -+ 2.621978 57 0 57 57 44 TCGA-DX-A7ER-01A-11R-A36F-07 Nchr12~104659086~Nchr12~104659189 intergenic "-," "-," chr12~chr12 104659086 104659189 5 -- 1.332179 5 5 0 5 148 TCGA-DX-A7ER-01A-11R-A36F-07 Nchr12~63359394~Nchr12~63359500 intergenic "-," "-," chr12~chr12 63359394 63359500 2 -- 0.693147 2 2 0 2 22 TCGA-DX-A7ER-01A-11R-A36F-07 Nchr14~99439461~Nchr14~99439316 intergenic "-," "-," chr14~chr14 99439461 99439316 2 ++ 0.693147 2 0 2 2 32 TCGA-DX-A7ER-01A-11R-A36F-07 Nchr15~70640197~Nchr15~70423230 intergenic "-," "-," chr15~chr15 70640197 70423230 14 -- 2.242973 5 5 0 5 16 TCGA-DX-A7ER-01A-11R-A36F-07 Nchr15~70878214~Nchr15~70423230 intergenic "-," "-," chr15~chr15 70878214 70423230 58 -- 2.677846 57 25 32 57 118 TCGA-DX-A7ER-01A-11R-A36F-07 Nchr15~70878214~Nchr15~70526550 intergenic "-," "-," chr15~chr15 70878214 70526550 2 -- 0.693147 2 2 0 2 18 TCGA-DX-A7ER-01A-11R-A36F-07 Nchr15~70878214~Nchr15~70640258 intergenic "-," "-," chr15~chr15 70878214 70640258 22 -- 1.893788 8 0 8 8 24 TCGA-DX-A7ER-01A-11R-A36F-07 Nchr15~70878214~Nchr15~70640615 intergenic "-," "-," chr15~chr15 70878214 70640615 2 -- 0.693147 1 1 0 1 6 TCGA-DX-A7ER-01A-11R-A36F-07 Nchr1~172107724~Nchr1~172107933 intergenic "-," "-," chr1~chr1 172107724 172107933 4 -- 0.562335 4 3 1 4 20 TCGA-DX-A7ER-01A-11R-A36F-07 Nchr2~122702023~Nchr2~122978395 intergenic "-," "-," chr2~chr2 122702023 122978395 3 ++ 1.098612 3 2 1 3 6 TCGA-DX-A7ER-01A-11R-A36F-07 Nchr2~177065894~Nchr2~177066044 intergenic "-," "-," chr2~chr2 177065894 177066044 4 -- 1.386294 3 0 3 3 6 TCGA-DX-A7ER-01A-11R-A36F-07 Nchr4~119199942~Nchr4~119200075 intergenic "-," "-," chr4~chr4 119199942 119200075 2 -- 0.693147 2 2 0 2 2 TCGA-DX-A7ER-01A-11R-A36F-07 Nchr6~151546858~RPS12 intergenic "-," "RPS12," chr6~chr6 151546858 133138099 6 ++ 1.011404 6 5 1 6 610 TCGA-DX-A7ER-01A-11R-A36F-07 Nchr6~8438264~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8438264 8784424 2 ++ 0.693147 2 1 1 2 8 TCGA-DX-A7ER-01A-11R-A36F-07 Nchr6~8558876~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8558876 8784424 10 ++ 1.609438 5 2 3 5 12 TCGA-DX-A7ER-01A-11R-A36F-07 Nchr9~19200532~RPS6 intergenic "-," "RPS6," chr9~chr9 19200532 19378478 2 -- 0.693147 2 0 2 2 138 TCGA-DX-A7ER-01A-11R-A36F-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 4 ++ 0.562335 4 1 3 4 12 TCGA-DX-A7ER-01A-11R-A36F-07 RP13-188A5.1~NchrX~56231406 intergenic "RP13-188A5.1," "-," chrX~chrX 55935233 56231406 3 ++ 0.636514 3 3 0 3 6 TCGA-DX-AB2P-01A-11R-A38C-07 AL163953.3~Nchr14~77067935 intergenic "AL163953.3," "-," chr14~chr14 53866905 77067935 3 -- 1.098612 2 0 2 2 2 TCGA-DX-AB2P-01A-11R-A38C-07 C14orf149~Nchr14~26110849 intergenic "C14orf149," "-," chr14~chr14 59942587 26110849 8 -- 1.732868 8 4 4 8 28 TCGA-DX-AB2P-01A-11R-A38C-07 C1orf196~PHGDH fusion "C1orf196," "PHGDH," chr1~chr1 14507087 120263793 11 ++ 1.972247 8 1 7 8 14 TCGA-DX-AB2P-01A-11R-A38C-07 C20orf43~Nchr14~29787208 intergenic "C20orf43," "-," chr20~chr14 55059245 29787208 6 +- 1.56071 6 1 5 6 4 TCGA-DX-AB2P-01A-11R-A38C-07 COL16A1~COL1A1 fusion "COL16A1," "COL1A1," chr1~chr17 32124089 48267441 2 -- 0.693147 2 1 1 2 6 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48276587 94030879 4 -+ 1.039721 2 1 1 2 12 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271312 94034161 2 -+ 0.693147 2 1 1 2 86 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267220 94034985 3 -+ 1.098612 1 1 0 1 142 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273675 94034985 4 -+ 1.386294 2 1 1 2 86 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266740 94035596 4 -+ 1.386294 3 3 0 3 358 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94037159 9 -+ 0.683739 8 8 0 8 552 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272593 94037159 9 -+ 1.427061 5 5 0 5 196 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48270158 94038082 230 -+ 0.439729 20 16 4 20 406 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48269149 94038912 12 -+ 2.094729 8 5 3 8 158 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273978 94039554 14 -+ 0.257319 13 13 0 13 38 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267057 94039751 3 -+ 1.098612 3 2 1 3 68 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266326 94039751 3 -+ 1.098612 2 1 1 2 290 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264862 94039751 3 -+ 1.098612 2 1 1 2 120 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48275093 94039795 9 -+ 1.14906 7 7 0 7 16 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271304 94042395 2 -+ 0.693147 1 1 0 1 278 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94042395 10 -+ 2.163956 5 5 0 5 566 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273978 94042395 5 -+ 1.609438 2 2 0 2 82 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266738 94043002 3 -+ 1.098612 1 1 0 1 112 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48265944 94043012 2 -+ 0.693147 2 1 1 2 450 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48274541 94043206 2 -+ 0.693147 2 1 1 2 18 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267051 94043541 3 -+ 1.098612 2 2 0 2 116 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48270169 94043541 2 -+ 0.693147 1 1 0 1 128 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272601 94043553 4 -+ 1.386294 1 1 0 1 32 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273296 94045741 4 -+ 0.562335 3 3 0 3 90 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273284 94047811 3 -+ 1.098612 2 2 0 2 100 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272593 94047811 9 -+ 0.683739 8 8 0 8 62 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273292 94048829 3 -+ 1.098612 3 2 1 3 176 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272622 94049545 3 -+ 1.098612 3 2 1 3 144 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267220 94050321 3 -+ 0.636514 2 1 1 2 196 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264376 94050330 9 -+ 0.936888 3 3 0 3 470 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264845 94050330 5 -+ 1.609438 4 1 3 4 550 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267040 94052269 7 -+ 1.277034 1 1 0 1 284 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48275794 94052404 3 -+ 0.636514 3 3 0 3 26 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94054429 42 -+ 0.779913 38 36 2 38 396 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267904 94055152 11 -+ 1.540306 4 1 3 4 80 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48265891 94055310 18 -+ 1.534141 16 10 6 16 462 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271304 94055762 11 -+ 0.885574 9 9 0 9 100 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272410 94055769 2 -+ 0.693147 1 0 1 1 52 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266546 94055790 6 -+ 1.791759 3 2 1 3 316 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271727 94055826 2 -+ 0.693147 1 1 0 1 102 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272942 94058563 2 -+ 0.693147 2 1 1 2 6 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48263319 94058563 10 -+ 1.557113 9 9 0 9 128 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268178 189856213 4 -+ 1.386294 3 2 1 3 204 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48273675 189856910 9 -+ 1.83102 7 5 2 7 32 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48273284 189858087 3 -+ 1.098612 2 2 0 2 40 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272795 189858123 2 -+ 0.693147 2 2 0 2 32 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266738 189859032 17 -+ 1.037591 10 10 0 10 170 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48273978 189859267 5 -+ 1.332179 5 4 1 5 16 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268774 189859267 6 -+ 1.242453 3 1 2 3 66 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48275330 189859274 2 -+ 0.693147 2 1 1 2 10 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272966 189859274 3 -+ 1.098612 2 1 1 2 30 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265891 189860418 3 -+ 1.098612 3 2 1 3 36 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272408 189860418 4 -+ 0.693147 3 1 2 3 16 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48271312 189860464 2 -+ 0.693147 1 0 1 1 52 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48275093 189861891 2 -+ 0.693147 2 1 1 2 28 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266738 189861891 37 -+ 1.173522 27 26 1 27 240 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268836 189861896 4 -+ 1.039721 2 1 1 2 90 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266326 189862454 3 -+ 1.098612 2 2 0 2 192 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268836 189862999 20 -+ 0.799903 20 16 4 20 88 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272593 189864568 6 -+ 0.867563 6 5 1 6 46 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266103 189864568 5 -+ 0.500402 5 0 5 5 394 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266755 189864587 4 -+ 0.562335 4 4 0 4 216 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48273701 189867034 3 -+ 1.098612 1 0 1 1 60 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272593 189867690 7 -+ 1.549826 4 3 1 4 62 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266555 189867718 2 -+ 0.693147 2 1 1 2 314 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265891 189868137 6 -+ 1.242453 3 2 1 3 220 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266746 189868727 2 -+ 0.693147 2 2 0 2 102 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48264393 189868817 3 -+ 1.098612 2 0 2 2 34 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268178 189870076 28 -+ 1.580649 24 21 3 24 146 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48269836 189870139 3 -+ 1.098612 3 2 1 3 208 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266103 189871071 7 -+ 1.475076 3 2 1 3 138 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48264429 189872816 2 -+ 0.693147 1 1 0 1 78 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48263259 189875497 2 -+ 0.693147 2 1 1 2 46 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48263139 189876354 2 -+ 0.693147 2 1 1 2 22 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL5A1 fusion "COL1A1," "COL5A1," chr17~chr9 48264845 137645696 14 -+ 1.028514 11 11 0 11 2 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL5A1 fusion "COL1A1," "COL5A1," chr17~chr9 48266103 137650089 7 -+ 0.9557 5 5 0 5 6 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL5A1 fusion "COL1A1," "COL5A1," chr17~chr9 48266738 137701029 17 -+ 1.921336 11 10 1 11 6 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL6A1 fusion "COL1A1," "COL6A1," chr17~chr21 48262950 47422135 2 -+ 0.693147 2 1 1 2 2 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~COL6A2 fusion "COL1A1," "COL6A2," chr17~chr21 48263147 47552274 2 -+ 0.693147 2 2 0 2 2 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A1~FN1 fusion "COL1A1," "FN1," chr17~chr2 48265290 216235057 2 -- 0.693147 2 1 1 2 2 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94041994 48266371 4 +- 1.386294 3 2 1 3 40 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94053755 48266371 51 +- 0.784433 47 0 47 47 260 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94051264 48266371 2 +- 0.693147 2 2 0 2 156 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94037692 48266636 5 +- 1.332179 5 4 1 5 70 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48266636 24 +- 1.336922 14 9 5 14 348 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94052323 48266844 3 +- 1.098612 1 1 0 1 510 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047864 48266899 3 +- 1.098612 2 1 1 2 192 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94038135 48267957 2 +- 0.693147 2 1 1 2 68 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48270054 14 +- 0.895333 2 0 2 2 120 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94054975 48270408 20 +- 1.012663 20 0 20 20 1386 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047864 48271987 5 +- 1.609438 5 3 2 5 448 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94035615 48272461 5 +- 1.332179 4 0 4 4 74 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047864 48272691 6 +- 0.867563 6 1 5 6 236 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48272839 3 +- 1.098612 3 2 1 3 126 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049960 48272839 2 +- 0.693147 1 1 0 1 184 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94038135 48273026 3 +- 1.098612 2 1 1 2 66 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94034564 48273560 5 +- 1.332179 3 0 3 3 30 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48273560 5 +- 1.332179 3 0 3 3 142 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94056373 48273889 4 +- 1.386294 2 2 0 2 370 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94035615 48273889 2 +- 0.693147 2 2 0 2 68 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94038135 48273889 4 +- 0.562335 3 0 3 3 106 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94034564 48274424 4 +- 1.039721 2 0 2 2 50 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94054949 48275118 3 +- 1.098612 1 0 1 1 168 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94052377 48275127 4 +- 1.039721 1 0 1 1 68 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94047143 189855757 3 ++ 0.636514 3 0 3 3 16 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94053755 189859267 5 ++ 0.500402 5 1 4 5 10 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94039133 189859267 2 ++ 0.693147 2 0 2 2 6 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94034552 189859300 4 ++ 0.562335 4 4 0 4 2 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94043587 189859772 4 ++ 1.039721 4 1 3 4 10 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94047143 189860418 2 ++ 0.693147 2 1 1 2 22 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94047143 189864568 3 ++ 1.098612 2 1 1 2 68 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94035615 189864568 3 ++ 1.098612 2 1 1 2 20 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94047045 189864587 3 ++ 1.098612 2 0 2 2 24 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94056607 189868137 6 ++ 1.791759 2 1 1 2 22 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94055169 189868137 4 ++ 1.386294 3 0 3 3 36 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94049756 189868460 5 ++ 1.332179 4 0 4 4 28 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94047047 189869038 2 ++ 0.693147 2 1 1 2 10 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94045815 189871071 2 ++ 0.693147 1 0 1 1 18 TCGA-DX-AB2P-01A-11R-A38C-07 COL1A2~COL5A1 fusion "COL1A2," "COL5A1," chr7~chr9 94047143 137705829 12 ++ 1.314374 12 11 1 12 8 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189867788 48264283 3 +- 1.098612 2 0 2 2 38 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189854875 48264483 3 +- 1.098612 2 1 1 2 10 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870985 48265281 2 +- 0.693147 2 2 0 2 72 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189867735 48265307 2 +- 0.693147 2 1 1 2 80 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189864303 48265317 10 +- 2.025326 9 1 8 9 38 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870985 48265317 10 +- 1.418484 10 1 9 10 82 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189869090 48265998 2 +- 0.693147 2 1 1 2 66 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870985 48265998 5 +- 1.609438 3 1 2 3 120 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189866289 48266608 2 +- 0.693147 1 0 1 1 50 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189861222 48266636 5 +- 1.05492 4 4 0 4 22 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189857666 48267957 2 +- 0.693147 2 0 2 2 38 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870985 48267957 3 +- 1.098612 3 1 2 3 120 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189863444 48268285 6 +- 1.242453 6 2 4 6 42 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189871708 48269183 3 +- 1.098612 3 0 3 3 156 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189859032 48270054 3 +- 1.098612 3 0 3 3 14 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189859825 48270211 3 +- 1.098612 2 0 2 2 32 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870985 48271544 4 +- 1.039721 3 2 1 3 156 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189857666 48273026 9 +- 1.676988 3 2 1 3 26 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189859058 48273889 26 +- 0.839796 24 1 23 24 56 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189856448 48274424 6 +- 1.011404 5 0 5 5 22 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189867077 48275363 2 +- 0.693147 2 0 2 2 18 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189871681 48278959 7 +- 1.549826 4 1 3 4 64 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189856937 94029527 2 ++ 0.693147 2 1 1 2 2 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189864109 94038912 7 ++ 1.549826 6 5 1 6 22 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189858808 94040368 2 ++ 0.693147 2 1 1 2 4 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189873695 94048829 2 ++ 0.693147 2 1 1 2 30 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189868190 94049853 6 ++ 1.242453 6 6 0 6 70 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189863444 94049907 4 ++ 1.039721 4 2 2 4 12 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189864092 94050367 68 ++ 1.99311 2 0 2 2 14 TCGA-DX-AB2P-01A-11R-A38C-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189859825 94055780 2 ++ 0.693147 2 2 0 2 8 TCGA-DX-AB2P-01A-11R-A38C-07 COL5A2~COL1A1 fusion "COL5A2," "COL1A1," chr2~chr17 189907877 48270211 4 -- 1.039721 4 4 0 4 2 TCGA-DX-AB2P-01A-11R-A38C-07 COL6A2~COL1A1 fusion "COL6A2," "COL1A1," chr21~chr17 47544583 48265289 3 +- 1.098612 2 1 1 2 8 TCGA-DX-AB2P-01A-11R-A38C-07 COL6A2~COL1A1 fusion "COL6A2," "COL1A1," chr21~chr17 47537850 48265998 2 +- 0.693147 2 2 0 2 2 TCGA-DX-AB2P-01A-11R-A38C-07 DCAF5~Nchr14~95262950 intergenic "DCAF5," "-," chr14~chr14 69558391 95262950 2 -+ 0.693147 2 2 0 2 6 TCGA-DX-AB2P-01A-11R-A38C-07 DCAF5~Nchr14~95267192 intergenic "DCAF5," "-," chr14~chr14 69558391 95267192 2 -+ 0.693147 2 1 1 2 2 TCGA-DX-AB2P-01A-11R-A38C-07 DST~Nchr8~38509581 intergenic "DST," "-," chr6~chr8 56818583 38509581 3 -- 1.098612 1 1 0 1 12 TCGA-DX-AB2P-01A-11R-A38C-07 FAM53C~Nchr5~154931936 intergenic "FAM53C," "-," chr5~chr5 137677555 154931936 2 ++ 0.693147 2 0 2 2 10 TCGA-DX-AB2P-01A-11R-A38C-07 FANCM~Nchr14~61020953 intergenic "FANCM," "-," chr14~chr14 45624662 61020953 2 ++ 0.693147 2 1 1 2 6 TCGA-DX-AB2P-01A-11R-A38C-07 FKBP7~Nchr2~127294094 intergenic "FKBP7," "-," chr2~chr2 179341789 127294094 19 -- 2.302014 19 7 12 19 58 TCGA-DX-AB2P-01A-11R-A38C-07 FKBP7~Nchr2~127294094 intergenic "FKBP7," "-," chr2~chr2 179343006 127294094 16 -- 1.960095 16 4 12 16 22 TCGA-DX-AB2P-01A-11R-A38C-07 FOXM1~Nchr2~104067073 intergenic "FOXM1," "-," chr12~chr2 2981262 104067073 6 -- 1.329661 6 3 3 6 16 TCGA-DX-AB2P-01A-11R-A38C-07 GAPDH~COL1A1 fusion "GAPDH," "COL1A1," chr12~chr17 6646839 48263291 4 +- 0.693147 4 2 2 4 4 TCGA-DX-AB2P-01A-11R-A38C-07 IGKV4-1~AC096579.7 fusion "IGKV4-1," "IGKC,AC096579.7," chr2~chr2 89185136 89157196 3 +- 1.098612 3 3 0 3 16 TCGA-DX-AB2P-01A-11R-A38C-07 LASS6~NchrX~30159114 intergenic "LASS6," "-," chr2~chrX 169551561 30159114 2 +- 0.693147 2 2 0 2 4 TCGA-DX-AB2P-01A-11R-A38C-07 MARCH7~Nchr2~150748317 intergenic "MARCH7," "-," chr2~chr2 160585686 150748317 4 ++ 1.386294 3 1 2 3 14 TCGA-DX-AB2P-01A-11R-A38C-07 MMP14~COL1A1 fusion "MMP14," "COL1A1," chr14~chr17 23315916 48264103 2 +- 0.693147 2 1 1 2 4 TCGA-DX-AB2P-01A-11R-A38C-07 MMP14~COL1A1 fusion "MMP14," "COL1A1," chr14~chr17 23316548 48273716 2 +- 0.693147 2 1 1 2 10 TCGA-DX-AB2P-01A-11R-A38C-07 MYH8~Nchr17~10511462 intergenic "MYH8," "-," chr17~chr17 10309555 10511462 2 ++ 0.693147 2 1 1 2 2 TCGA-DX-AB2P-01A-11R-A38C-07 MYL12A~C18orf42 fusion "MYL12A," "C18orf42," chr18~chr18 3254048 5145754 77 +- 2.73758 77 39 38 77 148 TCGA-DX-AB2P-01A-11R-A38C-07 Nchr11~134945967~Nchr6~125623465 intergenic "-," "-," chr11~chr6 134945967 125623465 8 -- 1.732868 8 4 4 8 24 TCGA-DX-AB2P-01A-11R-A38C-07 Nchr11~5383946~RP11-467L20.9 intergenic "-," "C11orf10,RP11-467L20.9," chr11~chr11 5383946 61558045 2 -- 0.693147 2 0 2 2 2 TCGA-DX-AB2P-01A-11R-A38C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 37 -+ 2.462837 18 0 18 18 22 TCGA-DX-AB2P-01A-11R-A38C-07 Nchr14~106772476~Nchr14~106488489 intergenic "-," "-," chr14~chr14 106772476 106488489 8 ++ 1.494175 7 4 3 7 6 TCGA-DX-AB2P-01A-11R-A38C-07 Nchr14~58448631~SLC35F4 intergenic "-," "SLC35F4," chr14~chr14 58448631 58060842 5 -- 1.332179 5 1 4 5 6 TCGA-DX-AB2P-01A-11R-A38C-07 Nchr14~77067820~TTLL5 intergenic "-," "TTLL5," chr14~chr14 77067820 76420767 4 -+ 1.386294 2 0 2 2 12 TCGA-DX-AB2P-01A-11R-A38C-07 Nchr14~83685774~Nchr14~43039076 intergenic "-," "-," chr14~chr14 83685774 43039076 2 ++ 0.693147 2 1 1 2 6 TCGA-DX-AB2P-01A-11R-A38C-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 3 ++ 1.098612 3 2 1 3 2 TCGA-DX-AB2P-01A-11R-A38C-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 4 ++ 1.039721 3 1 2 3 10 TCGA-DX-AB2P-01A-11R-A38C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 21 -+ 2.463281 20 14 6 20 208 TCGA-DX-AB2P-01A-11R-A38C-07 Nchr3~27674702~Nchr3~27674818 intergenic "-," "-," chr3~chr3 27674702 27674818 2 -- 0.693147 2 0 2 2 14 TCGA-DX-AB2P-01A-11R-A38C-07 Nchr6~151546858~RPS12 intergenic "-," "RPS12," chr6~chr6 151546858 133138099 3 ++ 0.636514 1 0 1 1 96 TCGA-DX-AB2P-01A-11R-A38C-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 12 ++ 2.094729 12 12 0 12 2 TCGA-DX-AB2P-01A-11R-A38C-07 Nchr6~8558876~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8558876 8784424 7 ++ 1.747868 4 0 4 4 4 TCGA-DX-AB2P-01A-11R-A38C-07 NchrX~36982319~NchrX~36698022 intergenic "-," "-," chrX~chrX 36982319 36698022 2 -- 0.693147 2 0 2 2 22 TCGA-DX-AB2P-01A-11R-A38C-07 RASA3~Nchr13~70721487 intergenic "RASA3," "-," chr13~chr13 114806476 70721487 7 -+ 1.94591 6 2 4 6 12 TCGA-DX-AB2P-01A-11R-A38C-07 RSPO1~COL3A1 fusion "RSPO1," "COL3A1," chr1~chr2 38077349 189866262 3 -+ 1.098612 2 0 2 2 4 TCGA-DX-AB2P-01A-11R-A38C-07 RUNX1T1~TMEM74 fusion "RUNX1T1," "TMEM74," chr8~chr8 93017344 109797366 2 -- 0.693147 2 0 2 2 2 TCGA-DX-AB2P-01A-11R-A38C-07 SEL1L~FNTB fusion "SEL1L," "FNTB,CHURC1,FNTB,CHURC1,FNTB,CHURC1," chr14~chr14 81950569 65390709 25 -+ 2.564278 24 10 14 24 94 TCGA-DX-AB2P-01A-11R-A38C-07 SERPINH1~COL1A1 fusion "SERPINH1,RP11-939C17.2,SERPINH1," "COL1A1," chr11~chr17 75283049 48268760 3 -- 1.098612 3 1 2 3 4 TCGA-DX-AB2P-01A-11R-A38C-07 SRR~NDEL1 fusion "SRR," "NDEL1," chr17~chr17 2207311 8347578 7 ++ 1.549826 7 0 7 7 2 TCGA-DX-AB2P-01A-11R-A38C-07 SULF2~WFDC3 fusion "SULF2," "WFDC3," chr20~chr20 46365447 44404241 14 -- 2.242973 13 3 10 13 72 TCGA-DX-AB2P-01A-11R-A38C-07 TOM1L2~Nchr17~13937733 intergenic "TOM1L2," "-," chr17~chr17 17796975 13937733 8 -- 1.732868 8 6 2 8 22 TCGA-DX-AB2P-01A-11R-A38C-07 XRCC5~Nchr2~217880418 intergenic "XRCC5," "-," chr2~chr2 217059709 217880418 8 +- 1.906155 7 3 4 7 4 TCGA-DX-AB2P-01A-11R-A38C-07 XRCC5~Nchr2~217884068 intergenic "XRCC5," "-," chr2~chr2 217059709 217884068 2 +- 0.693147 2 1 1 2 4 TCGA-3B-A9HL-01A-11R-A38C-07 AMPD3~Nchr11~14414199 intergenic "AMPD3," "-," chr11~chr11 10524441 14414199 3 ++ 1.098612 3 2 1 3 4 TCGA-3B-A9HL-01A-11R-A38C-07 ANO2~Nchr12~88108404 intergenic "ANO2," "-," chr12~chr12 5744318 88108404 5 -- 1.609438 4 3 1 4 4 TCGA-3B-A9HL-01A-11R-A38C-07 AP002478.1~SYT1 fusion "AP002478.1," "SYT1," chr18~chr12 3594482 79747282 9 ++ 2.043192 5 3 2 5 2 TCGA-3B-A9HL-01A-11R-A38C-07 ARPC3~GLTP fusion "ARPC3," "GLTP," chr12~chr12 110888060 110296546 4 -- 1.039721 2 2 0 2 8 TCGA-3B-A9HL-01A-11R-A38C-07 ATP2A2~COL2A1 fusion "ATP2A2," "COL2A1," chr12~chr12 110771948 48378382 7 +- 1.747868 7 5 2 7 8 TCGA-3B-A9HL-01A-11R-A38C-07 C12orf5~ZNF827 fusion "C12orf5," "ZNF827," chr12~chr4 4430469 146744677 4 +- 0.693147 3 0 3 3 6 TCGA-3B-A9HL-01A-11R-A38C-07 CAMSAP1~Nchr8~80304992 intergenic "CAMSAP1," "-," chr9~chr8 138773479 80304992 7 -- 1.747868 5 0 5 5 6 TCGA-3B-A9HL-01A-11R-A38C-07 CAMSAP1~Nchr8~80330592 intergenic "CAMSAP1," "-," chr9~chr8 138773479 80330592 14 -- 2.242973 13 7 6 13 32 TCGA-3B-A9HL-01A-11R-A38C-07 CAMSAP1~Nchr8~80331769 intergenic "CAMSAP1," "-," chr9~chr8 138773479 80331769 3 -- 0.636514 3 1 2 3 46 TCGA-3B-A9HL-01A-11R-A38C-07 CAMSAP1~Nchr8~80331772 intergenic "CAMSAP1," "-," chr9~chr8 138773479 80331772 2 -- 0.693147 2 0 2 2 26 TCGA-3B-A9HL-01A-11R-A38C-07 CCAR1~Nchr15~98309757 intergenic "CCAR1," "-," chr10~chr15 70482334 98309757 3 +- 1.098612 3 2 1 3 2 TCGA-3B-A9HL-01A-11R-A38C-07 CCAR1~Nchr15~98313105 intergenic "CCAR1," "-," chr10~chr15 70482334 98313105 9 +- 2.043192 9 6 3 9 26 TCGA-3B-A9HL-01A-11R-A38C-07 CCNY~Nchr10~33651398 intergenic "CCNY," "-," chr10~chr10 35782425 33651398 5 -+ 1.609438 5 1 4 5 2 TCGA-3B-A9HL-01A-11R-A38C-07 CD2AP~RAB21 fusion "CD2AP," "RAB21," chr6~chr12 47471176 72175811 3 ++ 1.098612 1 0 1 1 2 TCGA-3B-A9HL-01A-11R-A38C-07 CLEC2B~C12orf28 fusion "CLEC2B," "C12orf28," chr12~chr12 10021804 70345893 27 -+ 2.477556 27 14 13 27 80 TCGA-3B-A9HL-01A-11R-A38C-07 CNOT2~Nchr6~137675002 intergenic "CNOT2," "-," chr12~chr6 70672054 137675002 299 ++ 3.078044 273 114 159 273 882 TCGA-3B-A9HL-01A-11R-A38C-07 CNOT2~Nchr6~137675044 intergenic "CNOT2," "-," chr12~chr6 70672009 137675044 3 ++ 1.098612 1 1 0 1 256 TCGA-3B-A9HL-01A-11R-A38C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189867077 48266636 2 +- 0.693147 2 1 1 2 2 TCGA-3B-A9HL-01A-11R-A38C-07 CPSF6~VGLL2 fusion "CPSF6," "VGLL2," chr12~chr6 69656342 117593617 2 ++ 0.693147 2 0 2 2 4 TCGA-3B-A9HL-01A-11R-A38C-07 CSRP2~Nchr12~86892605 intergenic "CSRP2," "-," chr12~chr12 77254064 86892605 36 -+ 2.777267 36 16 20 36 84 TCGA-3B-A9HL-01A-11R-A38C-07 CSRP2~Nchr12~86908411 intergenic "CSRP2," "-," chr12~chr12 77254064 86908411 5 -+ 1.332179 4 3 1 4 2 TCGA-3B-A9HL-01A-11R-A38C-07 DCBLD1~CCT2 fusion "DCBLD1," "CCT2," chr6~chr12 117825142 69985839 612 ++ 3.291761 602 324 278 602 1558 TCGA-3B-A9HL-01A-11R-A38C-07 DIS3L2~Nchr12~78994639 intergenic "DIS3L2," "-," chr2~chr12 233114056 78994639 2 +- 0.693147 2 1 1 2 2 TCGA-3B-A9HL-01A-11R-A38C-07 EYA4~MAP3K5 fusion "EYA4," "MAP3K5," chr6~chr6 133562887 137026271 2 +- 0.693147 2 1 1 2 10 TCGA-3B-A9HL-01A-11R-A38C-07 FBN1~NHSL1 fusion "FBN1," "NHSL1," chr15~chr6 48826277 138817508 3 -- 1.098612 3 0 3 3 2 TCGA-3B-A9HL-01A-11R-A38C-07 FRS2~Nchr12~79077681 intergenic "FRS2," "-," chr12~chr12 69924740 79077681 5 +- 1.332179 1 0 1 1 2 TCGA-3B-A9HL-01A-11R-A38C-07 FRS2~Nchr12~79111212 intergenic "FRS2," "-," chr12~chr12 69924740 79111212 17 +- 2.313154 11 1 10 11 38 TCGA-3B-A9HL-01A-11R-A38C-07 FYN~CDK19 fusion "FYN," "CDK19," chr6~chr6 112194171 110948348 16 -- 2.166085 16 16 0 16 36 TCGA-3B-A9HL-01A-11R-A38C-07 FYN~CDK19 fusion "FYN," "CDK19," chr6~chr6 112194171 110953364 32 -- 2.766856 31 31 0 31 98 TCGA-3B-A9HL-01A-11R-A38C-07 GNG12~Nchr12~84454933 intergenic "GNG12," "-," chr1~chr12 68243141 84454933 22 -- 2.712962 2 0 2 2 6 TCGA-3B-A9HL-01A-11R-A38C-07 GNG12~Nchr1~65980814 intergenic "GNG12," "-," chr1~chr1 68243141 65980814 35 -- 2.752697 18 15 3 18 6 TCGA-3B-A9HL-01A-11R-A38C-07 GRIP1~Nchr15~95888656 intergenic "GRIP1," "-," chr12~chr15 66800063 95888656 5 -+ 1.332179 4 2 2 4 16 TCGA-3B-A9HL-01A-11R-A38C-07 GRIP1~TSPAN31 fusion "GRIP1," "TSPAN31," chr12~chr12 66787988 58139528 3 -+ 1.098612 3 3 0 3 22 TCGA-3B-A9HL-01A-11R-A38C-07 HCG25~Nchr6~33457930 intergenic "HCG25,HCG25," "-," chr6~chr6 33219483 33457930 4 ++ 1.039721 3 2 1 3 6 TCGA-3B-A9HL-01A-11R-A38C-07 HELB~MGAT4C fusion "HELB," "MGAT4C," chr12~chr12 66704388 86829042 3 +- 0.636514 1 0 1 1 4 TCGA-3B-A9HL-01A-11R-A38C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 149 -- 2.242849 149 149 0 149 50 TCGA-3B-A9HL-01A-11R-A38C-07 IGF1R~MAP7 fusion "IGF1R," "MAP7," chr15~chr6 99251336 136742937 4 +- 1.386294 4 0 4 4 8 TCGA-3B-A9HL-01A-11R-A38C-07 KIF21A~COPS7B fusion "KIF21A," "COPS7B," chr12~chr2 39709837 232654195 5 -+ 1.332179 5 0 5 5 6 TCGA-3B-A9HL-01A-11R-A38C-07 KIF21A~COPS7B fusion "KIF21A," "COPS7B," chr12~chr2 39713708 232656443 18 -+ 2.080947 16 7 9 16 28 TCGA-3B-A9HL-01A-11R-A38C-07 LEPR~Nchr1~52463710 intergenic "LEPR,LEPROT,LEPR,LEPROT,LEPR," "-," chr1~chr1 65886423 52463710 7 +- 1.747868 6 6 0 6 2 TCGA-3B-A9HL-01A-11R-A38C-07 LRIG3~Nchr1~106434881 intergenic "LRIG3," "-," chr12~chr1 59307763 106434881 8 -- 1.906155 7 6 1 7 16 TCGA-3B-A9HL-01A-11R-A38C-07 LRIG3~Nchr1~106443242 intergenic "LRIG3," "-," chr12~chr1 59307763 106443242 53 -- 2.894205 53 18 35 53 84 TCGA-3B-A9HL-01A-11R-A38C-07 LRIG3~Nchr1~106446954 intergenic "LRIG3," "-," chr12~chr1 59307763 106446954 4 -- 1.386294 4 2 2 4 84 TCGA-3B-A9HL-01A-11R-A38C-07 LYZ~SBNO1 fusion "LYZ," "SBNO1," chr12~chr12 69746078 123834988 4 +- 1.386294 2 2 0 2 6 TCGA-3B-A9HL-01A-11R-A38C-07 MAP3K5~Nchr6~13524726 intergenic "MAP3K5," "-," chr6~chr6 136958463 13524726 8 -- 1.494175 8 7 1 8 22 TCGA-3B-A9HL-01A-11R-A38C-07 MAP7~Nchr12~87326610 intergenic "MAP7," "-," chr6~chr12 136680958 87326610 4 -+ 1.386294 4 2 2 4 8 TCGA-3B-A9HL-01A-11R-A38C-07 MDM2~Nchr12~84463404 intergenic "MDM2," "-," chr12~chr12 69218431 84463404 15 ++ 2.268605 15 12 3 15 18 TCGA-3B-A9HL-01A-11R-A38C-07 MDM2~Nchr12~84482771 intergenic "MDM2," "-," chr12~chr12 69218431 84482771 7 ++ 1.475076 7 5 2 7 16 TCGA-3B-A9HL-01A-11R-A38C-07 MDM2~Nchr12~84541532 intergenic "MDM2," "-," chr12~chr12 69218431 84541532 4 +- 1.386294 4 2 2 4 4 TCGA-3B-A9HL-01A-11R-A38C-07 MDM2~Nchr12~84548411 intergenic "MDM2," "-," chr12~chr12 69218431 84548411 12 +- 1.632631 12 2 10 12 64 TCGA-3B-A9HL-01A-11R-A38C-07 MGAT4C~RP11-781A6.1 fusion "MGAT4C," "RP11-781A6.1," chr12~chr12 86828934 78177043 12 -+ 2.484907 9 6 3 9 8 TCGA-3B-A9HL-01A-11R-A38C-07 MUTED~Nchr6~7432828 intergenic "TXNDC5,MUTED," "-," chr6~chr6 7895339 7432828 8 -- 1.906155 7 1 6 7 22 TCGA-3B-A9HL-01A-11R-A38C-07 MUTED~Nchr6~7482787 intergenic "TXNDC5,MUTED," "-," chr6~chr6 7895339 7482787 2 -- 0.693147 2 1 1 2 20 TCGA-3B-A9HL-01A-11R-A38C-07 MUTED~Nchr6~7499914 intergenic "TXNDC5,MUTED," "-," chr6~chr6 7895339 7499914 2 -- 0.693147 2 1 1 2 2 TCGA-3B-A9HL-01A-11R-A38C-07 NDUFA12~NUP107 fusion "NDUFA12," "NUP107," chr12~chr12 95396515 69082742 9 -+ 1.676988 9 6 3 9 28 TCGA-3B-A9HL-01A-11R-A38C-07 NEDD1~Nchr12~82153813 intergenic "NEDD1," "-," chr12~chr12 97306595 82153813 5 +- 1.332179 5 2 3 5 18 TCGA-3B-A9HL-01A-11R-A38C-07 NEDD1~Nchr12~82153889 intergenic "NEDD1," "-," chr12~chr12 97306595 82153889 5 +- 0.950271 5 2 3 5 34 TCGA-3B-A9HL-01A-11R-A38C-07 NEDD1~Nchr12~82153892 intergenic "NEDD1," "-," chr12~chr12 97306595 82153892 5 +- 0.950271 5 2 3 5 36 TCGA-3B-A9HL-01A-11R-A38C-07 NEDD1~Nchr12~85045637 intergenic "NEDD1," "-," chr12~chr12 97306595 85045637 16 ++ 2.252728 15 8 7 15 42 TCGA-3B-A9HL-01A-11R-A38C-07 NEDD1~Nchr12~85052751 intergenic "NEDD1," "-," chr12~chr12 97303673 85052751 7 ++ 1.94591 7 5 2 7 12 TCGA-3B-A9HL-01A-11R-A38C-07 NEDD1~Nchr12~98805090 intergenic "NEDD1," "-," chr12~chr12 97310553 98805090 11 -- 2.271869 10 5 5 10 36 TCGA-3B-A9HL-01A-11R-A38C-07 NEDD1~PPFIA2 fusion "NEDD1," "PPFIA2," chr12~chr12 97306595 82148002 4 +- 1.386294 4 0 4 4 8 TCGA-3B-A9HL-01A-11R-A38C-07 NEDD1~PPFIA2 fusion "NEDD1," "PPFIA2," chr12~chr12 97301078 82152286 2 +- 0.693147 2 2 0 2 2 TCGA-3B-A9HL-01A-11R-A38C-07 NEDD1~ZDHHC17 fusion "NEDD1," "ZDHHC17," chr12~chr12 97306595 77189267 3 ++ 0.636514 3 2 1 3 10 TCGA-3B-A9HL-01A-11R-A38C-07 NELF~Nchr9~139511616 intergenic "NELF," "-," chr9~chr9 140346817 139511616 15 -- 2.02623 13 6 7 13 20 TCGA-3B-A9HL-01A-11R-A38C-07 NELL2~MUC21 fusion "NELL2," "MUC21," chr12~chr6 45059267 30954014 7 -+ 1.549826 7 6 1 7 36 TCGA-3B-A9HL-01A-11R-A38C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 113 -+ 2.654883 56 0 56 56 30 TCGA-3B-A9HL-01A-11R-A38C-07 Nchr12~51937093~C12orf26 intergenic "-," "C12orf26," chr12~chr12 51937093 82780582 5 -+ 1.332179 5 2 3 5 2 TCGA-3B-A9HL-01A-11R-A38C-07 Nchr12~54360263~RP11-293I14.2 intergenic "-," "RP11-293I14.2,TMEM19," chr12~chr12 54360263 72090216 24 ++ 2.694154 24 14 10 24 26 TCGA-3B-A9HL-01A-11R-A38C-07 Nchr12~58884994~ZFC3H1 intergenic "-," "ZFC3H1," chr12~chr12 58884994 72013148 2 ++ 0.693147 2 1 1 2 70 TCGA-3B-A9HL-01A-11R-A38C-07 Nchr12~60310959~Nchr12~60371111 intergenic "-," "-," chr12~chr12 60310959 60371111 3 -- 0.636514 2 1 1 2 54 TCGA-3B-A9HL-01A-11R-A38C-07 Nchr12~60314757~Nchr12~79187907 intergenic "-," "-," chr12~chr12 60314757 79187907 9 -+ 2.043192 9 4 5 9 72 TCGA-3B-A9HL-01A-11R-A38C-07 Nchr12~60314757~Nchr12~79194878 intergenic "-," "-," chr12~chr12 60314757 79194878 14 -+ 2.143952 14 2 12 14 28 TCGA-3B-A9HL-01A-11R-A38C-07 Nchr12~60315056~Nchr12~79194878 intergenic "-," "-," chr12~chr12 60315056 79194878 2 -+ 0.693147 2 2 0 2 4 TCGA-3B-A9HL-01A-11R-A38C-07 Nchr12~84454831~CRADD intergenic "-," "CRADD," chr12~chr12 84454831 94161590 2 -- 0.693147 2 2 0 2 10 TCGA-3B-A9HL-01A-11R-A38C-07 Nchr12~84454831~Nchr12~84201928 intergenic "-," "-," chr12~chr12 84454831 84201928 11 -- 1.84622 10 9 1 10 4 TCGA-3B-A9HL-01A-11R-A38C-07 Nchr12~84454831~RP11-887P2.5 intergenic "-," "RP11-887P2.5," chr12~chr12 84454831 94129509 10 -- 1.834372 2 0 2 2 8 TCGA-3B-A9HL-01A-11R-A38C-07 Nchr15~96406737~Nchr15~95832783 intergenic "-," "-," chr15~chr15 96406737 95832783 2 -- 0.693147 2 1 1 2 10 TCGA-3B-A9HL-01A-11R-A38C-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 6 -- 1.56071 6 2 4 6 6 TCGA-3B-A9HL-01A-11R-A38C-07 Nchr19~50223254~RPS9 intergenic "-," "RPS9," chr19~chr19 50223254 54704726 4 ++ 0.693147 2 0 2 2 16 TCGA-3B-A9HL-01A-11R-A38C-07 Nchr5~44395451~Nchr5~44615143 intergenic "-," "-," chr5~chr5 44395451 44615143 5 ++ 1.609438 5 3 2 5 2 TCGA-3B-A9HL-01A-11R-A38C-07 Nchr6~137675105~Nchr6~104623558 intergenic "-," "-," chr6~chr6 137675105 104623558 8 ++ 1.732868 5 5 0 5 2 TCGA-3B-A9HL-01A-11R-A38C-07 Nchr6~137675105~RP11-362K2.2 intergenic "-," "RP11-362K2.2," chr6~chr12 137675105 59199723 3 ++ 1.098612 3 2 1 3 4 TCGA-3B-A9HL-01A-11R-A38C-07 Nchr6~137675105~RP11-362K2.2 intergenic "-," "RP11-362K2.2," chr6~chr12 137675105 59206196 11 ++ 1.84622 6 4 2 6 2 TCGA-3B-A9HL-01A-11R-A38C-07 Nchr6~137680281~Nchr6~104623558 intergenic "-," "-," chr6~chr6 137680281 104623558 2 ++ 0.693147 2 2 0 2 4 TCGA-3B-A9HL-01A-11R-A38C-07 Nchr6~137683931~Nchr6~104623558 intergenic "-," "-," chr6~chr6 137683931 104623558 3 ++ 1.098612 3 2 1 3 2 TCGA-3B-A9HL-01A-11R-A38C-07 Nchr6~137706153~RP11-362K2.2 intergenic "-," "RP11-362K2.2," chr6~chr12 137706153 59206196 7 ++ 1.747868 7 0 7 7 12 TCGA-3B-A9HL-01A-11R-A38C-07 Nchr6~29895882~HLA-C intergenic "-," "HLA-C," chr6~chr6 29895882 31238204 2 -- 0.693147 1 1 0 1 44 TCGA-3B-A9HL-01A-11R-A38C-07 Nchr9~17906920~Nchr9~18163860 intergenic "-," "-," chr9~chr9 17906920 18163860 3 ++ 1.098612 2 1 1 2 2 TCGA-3B-A9HL-01A-11R-A38C-07 Nchr9~19200845~RPS6 intergenic "-," "RPS6," chr9~chr9 19200845 19379586 2 -- 0.693147 2 0 2 2 122 TCGA-3B-A9HL-01A-11R-A38C-07 OBP2B~Nchr6~138699084 intergenic "OBP2B," "-," chr9~chr6 136083796 138699084 2 ++ 0.693147 2 2 0 2 2 TCGA-3B-A9HL-01A-11R-A38C-07 OSBPL8~CTDSP2 fusion "OSBPL8," "CTDSP2," chr12~chr12 76953177 58223379 9 -- 2.043192 9 6 3 9 40 TCGA-3B-A9HL-01A-11R-A38C-07 OSBPL8~Nchr12~86268051 intergenic "OSBPL8," "-," chr12~chr12 76844631 86268051 45 -+ 2.893492 44 21 23 44 96 TCGA-3B-A9HL-01A-11R-A38C-07 PDE7B~KIF21A fusion "PDE7B," "KIF21A," chr6~chr12 136472393 39726546 3 +- 1.098612 3 1 2 3 6 TCGA-3B-A9HL-01A-11R-A38C-07 PDE7B~Nchr12~84454933 intergenic "PDE7B," "-," chr6~chr12 136314195 84454933 11 -- 1.84622 5 5 0 5 4 TCGA-3B-A9HL-01A-11R-A38C-07 PPFIA2~GRIP1 fusion "PPFIA2," "GRIP1," chr12~chr12 82070570 66826408 24 -- 2.405342 14 11 3 14 6 TCGA-3B-A9HL-01A-11R-A38C-07 PPFIA2~Nchr12~119703046 intergenic "PPFIA2," "-," chr12~chr12 82147752 119703046 3 -+ 1.098612 3 2 1 3 4 TCGA-3B-A9HL-01A-11R-A38C-07 PTPRB~Nchr6~138043962 intergenic "RP11-588H23.3,PTPRB," "-," chr12~chr6 70932068 138043962 2 ++ 0.693147 2 1 1 2 2 TCGA-3B-A9HL-01A-11R-A38C-07 PTPRK~Nchr6~48544294 intergenic "PTPRK," "-," chr6~chr6 128643184 48544294 3 -- 1.098612 3 3 0 3 12 TCGA-3B-A9HL-01A-11R-A38C-07 RAB3B~MYSM1 fusion "RAB3B," "MYSM1," chr1~chr1 52398990 59131303 4 -- 1.386294 3 3 0 3 8 TCGA-3B-A9HL-01A-11R-A38C-07 RAB3IP~Nchr12~70119169 intergenic "RAB3IP," "-," chr12~chr12 70189124 70119169 2 +- 0.693147 2 1 1 2 8 TCGA-3B-A9HL-01A-11R-A38C-07 RP11-745O10.4~Nchr12~78741710 intergenic "TMBIM4,RP11-745O10.4,TMBIM4," "-," chr12~chr12 66539621 78741710 7 -- 1.549826 5 3 2 5 8 TCGA-3B-A9HL-01A-11R-A38C-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 4 ++ 1.039721 4 3 1 4 4 TCGA-3B-A9HL-01A-11R-A38C-07 RPS12~Nchr6~151546867 intergenic "RPS12," "-," chr6~chr6 133138127 151546867 2 -- 0.693147 2 0 2 2 220 TCGA-3B-A9HL-01A-11R-A38C-07 RPSAP52~Nchr12~91635973 intergenic "RPSAP52," "-," chr12~chr12 66220623 91635973 8 -+ 1.667462 8 2 6 8 20 TCGA-3B-A9HL-01A-11R-A38C-07 RPSAP52~Nchr12~91709233 intergenic "RPSAP52," "-," chr12~chr12 66220623 91709233 6 -+ 1.242453 6 2 4 6 18 TCGA-3B-A9HL-01A-11R-A38C-07 SBF2~Nchr19~23778924 intergenic "SBF2," "-," chr11~chr19 10315562 23778924 4 -+ 1.039721 4 0 4 4 6 TCGA-3B-A9HL-01A-11R-A38C-07 SBNO1~NAV3 fusion "SBNO1," "NAV3," chr12~chr12 123834857 78362299 2 -+ 0.693147 1 1 0 1 6 TCGA-3B-A9HL-01A-11R-A38C-07 SCN8A~ANO2 fusion "SCN8A," "ANO2," chr12~chr12 52056877 5756967 54 +- 2.907152 53 29 24 53 98 TCGA-3B-A9HL-01A-11R-A38C-07 SCN8A~Nchr12~91652336 intergenic "SCN8A," "-," chr12~chr12 52056877 91652336 25 +- 1.783384 25 22 3 25 26 TCGA-3B-A9HL-01A-11R-A38C-07 SCN8A~Nchr12~91670612 intergenic "SCN8A," "-," chr12~chr12 52056877 91670612 18 +- 2.50529 18 6 12 18 42 TCGA-3B-A9HL-01A-11R-A38C-07 SESN1~ARMC2 fusion "SESN1," "ARMC2," chr6~chr6 109414998 109274236 7 -+ 1.549826 7 5 2 7 8 TCGA-3B-A9HL-01A-11R-A38C-07 ST3GAL4~ZW10 fusion "ST3GAL4," "ZW10," chr11~chr11 126225737 113619142 26 +- 2.651462 25 25 0 25 18 TCGA-3B-A9HL-01A-11R-A38C-07 ST3GAL4~ZW10 fusion "ST3GAL4," "ZW10," chr11~chr11 126226197 113619142 10 +- 2.163956 10 6 4 10 30 TCGA-3B-A9HL-01A-11R-A38C-07 TM9SF3~Nchr12~86248228 intergenic "TM9SF3," "-," chr10~chr12 98319416 86248228 88 -- 2.556579 85 56 28 85 232 TCGA-3B-A9HL-01A-11R-A38C-07 TMCC3~Nchr12~74239811 intergenic "TMCC3," "-," chr12~chr12 95044129 74239811 8 -+ 1.906155 8 4 4 8 12 TCGA-3B-A9HL-01A-11R-A38C-07 TMTC2~Nchr12~28753568 intergenic "TMTC2," "-," chr12~chr12 83081448 28753568 4 +- 1.386294 3 2 1 3 10 TCGA-3B-A9HL-01A-11R-A38C-07 TNXB~Nchr6~135153807 intergenic "TNXB," "-," chr6~chr6 32052190 135153807 3 -+ 1.098612 2 0 2 2 2 TCGA-3B-A9HL-01A-11R-A38C-07 TNXB~Nchr6~135156568 intergenic "TNXB," "-," chr6~chr6 32052190 135156568 3 -+ 1.098612 3 3 0 3 2 TCGA-3B-A9HL-01A-11R-A38C-07 TNXB~Nchr6~135164423 intergenic "TNXB," "-," chr6~chr6 32052190 135164423 3 -+ 1.098612 3 0 3 3 4 TCGA-3B-A9HL-01A-11R-A38C-07 TNXB~Nchr6~135171390 intergenic "TNXB," "-," chr6~chr6 32052190 135171390 9 -+ 2.197225 7 2 5 7 8 TCGA-3B-A9HL-01A-11R-A38C-07 TRERF1~GRK5 fusion "TRERF1," "GRK5," chr6~chr10 42214194 121140327 5 -+ 1.332179 5 1 4 5 4 TCGA-3B-A9HL-01A-11R-A38C-07 TRHDE~Nchr12~93949066 intergenic "TRHDE," "-," chr12~chr12 72680734 93949066 8 ++ 1.906155 8 4 4 8 10 TCGA-3B-A9HL-01A-11R-A38C-07 TSFM~NHSL1 fusion "TSFM," "NHSL1," chr12~chr6 58180945 138859073 4 +- 1.039721 4 2 2 4 24 TCGA-3B-A9HL-01A-11R-A38C-07 TSFM~NHSL1 fusion "TSFM," "NHSL1," chr12~chr6 58180945 138859092 2 +- 0.693147 2 0 2 2 20 TCGA-3B-A9HL-01A-11R-A38C-07 TTC33~Nchr5~40513171 intergenic "TTC33," "-," chr5~chr5 40746900 40513171 2 -- 0.693147 2 2 0 2 4 TCGA-3B-A9HL-01A-11R-A38C-07 UBR2~Nchr10~113261434 intergenic "UBR2," "-," chr6~chr10 42541731 113261434 7 +- 1.747868 7 4 3 7 14 TCGA-3B-A9HL-01A-11R-A38C-07 VAV2~RP11-99H20.1 fusion "VAV2," "RP11-99H20.1," chr9~chr8 136804225 83011355 8 -- 1.667462 7 5 2 7 6 TCGA-3B-A9HL-01A-11R-A38C-07 VTA1~RP11-588H23.3 fusion "VTA1," "RP11-588H23.3," chr6~chr12 142468536 70931830 17 ++ 2.313154 17 9 8 17 48 TCGA-3B-A9HL-01A-11R-A38C-07 ZFC3H1~Nchr12~58873454 intergenic "ZFC3H1," "-," chr12~chr12 72013706 58873454 21 -- 2.491494 21 13 8 21 122 TCGA-3B-A9HL-01A-11R-A38C-07 ZFC3H1~Nchr12~58873454 intergenic "ZFC3H1," "-," chr12~chr12 72013095 58873454 91 -- 2.841106 88 58 30 88 350 TCGA-3B-A9HL-01A-11R-A38C-07 ZFC3H1~Nchr12~58884873 intergenic "ZFC3H1," "-," chr12~chr12 72013095 58884873 98 -- 2.924517 95 50 45 95 236 TCGA-DX-AB2J-01A-11R-A38C-07 C15orf57~CBX3 fusion "C15orf57," "CBX3," chr15~chr7 40854971 26241389 5 -+ 1.332179 5 4 1 5 10 TCGA-DX-AB2J-01A-11R-A38C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 105 -- 2.436508 105 105 0 105 12 TCGA-DX-AB2J-01A-11R-A38C-07 Nchr10~91738461~SNRPD2 intergenic "-," "SNRPD2," chr10~chr19 91738461 46195211 2 -- 0.693147 2 1 1 2 4 TCGA-DX-AB2J-01A-11R-A38C-07 Nchr11~115530442~Nchr11~115771454 intergenic "-," "-," chr11~chr11 115530442 115771454 2 ++ 0.693147 2 2 0 2 4 TCGA-DX-AB2J-01A-11R-A38C-07 Nchr11~126310278~Nchr11~126522676 intergenic "-," "-," chr11~chr11 126310278 126522676 3 ++ 1.098612 3 0 3 3 12 TCGA-DX-AB2J-01A-11R-A38C-07 Nchr11~27603245~RPS25 intergenic "-," "RPS25," chr11~chr11 27603245 118889038 34 -- 2.085613 30 4 26 30 476 TCGA-DX-AB2J-01A-11R-A38C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 140 -+ 2.484015 56 0 56 56 42 TCGA-DX-AB2J-01A-11R-A38C-07 Nchr12~43243319~Nchr12~43537825 intergenic "-," "-," chr12~chr12 43243319 43537825 3 ++ 1.098612 2 1 1 2 2 TCGA-DX-AB2J-01A-11R-A38C-07 Nchr13~110383290~MYO16-AS1 intergenic "-," "MYO16-AS1," chr13~chr13 110383290 109816439 7 -- 1.94591 6 4 2 6 10 TCGA-DX-AB2J-01A-11R-A38C-07 Nchr14~24162555~Nchr14~24365761 intergenic "-," "-," chr14~chr14 24162555 24365761 9 ++ 1.676988 8 5 3 8 32 TCGA-DX-AB2J-01A-11R-A38C-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 5 ++ 1.332179 4 1 3 4 14 TCGA-DX-AB2J-01A-11R-A38C-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 5 ++ 1.332179 5 2 3 5 10 TCGA-DX-AB2J-01A-11R-A38C-07 Nchr17~12143811~Nchr17~12453277 intergenic "-," "-," chr17~chr17 12143811 12453277 3 ++ 1.098612 3 2 1 3 14 TCGA-DX-AB2J-01A-11R-A38C-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 6 ++ 1.329661 5 2 3 5 58 TCGA-DX-AB2J-01A-11R-A38C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 4 -+ 1.386294 4 2 2 4 60 TCGA-DX-AB2J-01A-11R-A38C-07 Nchr1~246339767~SMYD3 intergenic "-," "SMYD3," chr1~chr1 246339767 246093239 18 -- 1.889159 18 18 0 18 6 TCGA-DX-AB2J-01A-11R-A38C-07 Nchr1~35816325~RPL5 intergenic "-," "RPL5," chr1~chr1 35816325 93297674 5 -- 1.609438 1 1 0 1 2 TCGA-DX-AB2J-01A-11R-A38C-07 Nchr6~134089969~Nchr6~133889386 intergenic "-," "-," chr6~chr6 134089969 133889386 4 -- 1.386294 1 0 1 1 2 TCGA-DX-AB2J-01A-11R-A38C-07 Nchr6~77484983~Nchr6~77782931 intergenic "-," "-," chr6~chr6 77484983 77782931 6 ++ 1.329661 3 0 3 3 2 TCGA-DX-AB2J-01A-11R-A38C-07 Nchr7~124675277~AC008038.1 intergenic "-," "AC008038.1," chr7~chr7 124675277 132719582 3 -- 1.098612 3 0 3 3 2 TCGA-DX-AB2J-01A-11R-A38C-07 PCBP2~Nchr8~75515884 intergenic "PCBP2,RP11-793H13.8,PCBP2," "-," chr12~chr8 53858610 75515884 2 -- 0.693147 2 2 0 2 68 TCGA-DX-AB2J-01A-11R-A38C-07 ROBO1~Nchr3~59165891 intergenic "ROBO1," "-," chr3~chr3 78700882 59165891 4 -- 1.386294 4 3 1 4 12 TCGA-DX-AB2J-01A-11R-A38C-07 RP1-34H18.1~NAV3 fusion "RP1-34H18.1," "NAV3," chr12~chr12 77966046 78334099 2 ++ 0.693147 2 2 0 2 2 TCGA-DX-AB2J-01A-11R-A38C-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 2 ++ 0.693147 2 1 1 2 4 TCGA-DX-AB2J-01A-11R-A38C-07 ST3GAL4~Nchr11~126522676 intergenic "ST3GAL4," "-," chr11~chr11 126310214 126522676 2 ++ 0.693147 2 0 2 2 8 TCGA-DX-AB2J-01A-11R-A38C-07 TPST1~GS1-124K5.4 fusion "TPST1," "GS1-124K5.4," chr7~chr7 65751696 65960242 5 ++ 1.332179 4 3 1 4 22 TCGA-DX-AB2F-01A-11R-A38C-07 AC011497.1~Nchr19~43155239 intergenic "AC011497.1," "-," chr19~chr19 42929356 43155239 4 ++ 1.039721 4 3 1 4 6 TCGA-DX-AB2F-01A-11R-A38C-07 AKAP13~Nchr12~84821339 intergenic "AKAP13," "-," chr15~chr12 85873309 84821339 3 -- 0.636514 3 0 3 3 2 TCGA-DX-AB2F-01A-11R-A38C-07 ATP7A~PTPRR fusion "ATP7A," "PTPRR," chrX~chr12 77166332 71033057 11 +- 2.271869 10 5 5 10 14 TCGA-DX-AB2F-01A-11R-A38C-07 C12orf28~CTD-2021H9.3 fusion "C12orf28," "CTD-2021H9.3," chr12~chr12 70304710 71441459 2 +- 0.693147 2 2 0 2 20 TCGA-DX-AB2F-01A-11R-A38C-07 C12orf63~NAV3 fusion "C12orf63," "NAV3," chr12~chr12 96992545 78540149 14 ++ 1.94591 12 6 6 12 68 TCGA-DX-AB2F-01A-11R-A38C-07 C6orf211~Nchr12~75185424 intergenic "C6orf211," "-," chr6~chr12 151779707 75185424 22 ++ 2.260383 22 8 14 22 46 TCGA-DX-AB2F-01A-11R-A38C-07 C6orf211~Nchr12~75209094 intergenic "C6orf211," "-," chr6~chr12 151779707 75209094 7 ++ 1.747868 7 3 4 7 8 TCGA-DX-AB2F-01A-11R-A38C-07 C6orf211~Nchr2~232739061 intergenic "C6orf211," "-," chr6~chr2 151779707 232739061 3 ++ 0.636514 3 2 1 3 4 TCGA-DX-AB2F-01A-11R-A38C-07 CDK2AP1~Nchr2~7465083 intergenic "CDK2AP1," "-," chr12~chr2 123751831 7465083 2 +- 0.693147 2 2 0 2 2 TCGA-DX-AB2F-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272682 94043012 5 -+ 1.609438 4 3 1 4 4 TCGA-DX-AB2F-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266746 94043553 3 -+ 0.636514 1 1 0 1 10 TCGA-DX-AB2F-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266738 94047856 5 -+ 1.332179 4 3 1 4 10 TCGA-DX-AB2F-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48263319 94058563 3 -+ 1.098612 2 0 2 2 14 TCGA-DX-AB2F-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049717 48269241 4 +- 1.386294 4 2 2 4 4 TCGA-DX-AB2F-01A-11R-A38C-07 COX7B~Nchr12~71745861 intergenic "COX7B," "-," chrX~chr12 77155090 71745861 10 ++ 2.025326 6 5 1 6 26 TCGA-DX-AB2F-01A-11R-A38C-07 COX7B~NchrX~63866456 intergenic "COX7B," "-," chrX~chrX 77155090 63866456 2 ++ 0.693147 2 2 0 2 4 TCGA-DX-AB2F-01A-11R-A38C-07 COX7B~NchrX~63866825 intergenic "COX7B," "-," chrX~chrX 77155090 63866825 187 ++ 3.245737 113 91 21 113 222 TCGA-DX-AB2F-01A-11R-A38C-07 COX7B~NchrX~63867027 intergenic "COX7B," "-," chrX~chrX 77155090 63867027 6 ++ 1.56071 3 3 0 3 8 TCGA-DX-AB2F-01A-11R-A38C-07 COX7B~NchrX~63867615 intergenic "COX7B," "-," chrX~chrX 77155090 63867615 25 ++ 2.376992 11 9 2 11 48 TCGA-DX-AB2F-01A-11R-A38C-07 COX7B~NchrX~63900759 intergenic "COX7B," "-," chrX~chrX 77155090 63900759 6 ++ 1.791759 3 2 1 3 2 TCGA-DX-AB2F-01A-11R-A38C-07 DDX23~Nchr12~77087150 intergenic "DDX23," "-," chr12~chr12 49237723 77087150 3 -- 0.636514 3 2 1 3 10 TCGA-DX-AB2F-01A-11R-A38C-07 ELK3~Nchr12~71709620 intergenic "ELK3," "-," chr12~chr12 96588483 71709620 7 +- 1.747868 7 5 2 7 2356 TCGA-DX-AB2F-01A-11R-A38C-07 ELK3~Nchr12~71720975 intergenic "ELK3," "-," chr12~chr12 96588483 71720975 4 +- 1.386294 3 2 1 3 8 TCGA-DX-AB2F-01A-11R-A38C-07 ELK3~Nchr12~96492707 intergenic "ELK3," "-," chr12~chr12 96588483 96492707 3 +- 0.636514 3 2 1 3 10 TCGA-DX-AB2F-01A-11R-A38C-07 ELK3~PTPRR fusion "ELK3," "PTPRR," chr12~chr12 96588483 71033057 23 +- 2.464508 23 10 13 23 32 TCGA-DX-AB2F-01A-11R-A38C-07 ELK3~TSPAN8 fusion "ELK3," "TSPAN8," chr12~chr12 96588483 71551567 124 +- 3.134413 123 65 58 123 878 TCGA-DX-AB2F-01A-11R-A38C-07 ELK3~TSPAN8 fusion "ELK3," "TSPAN8," chr12~chr12 96588483 71607872 6 +- 1.791759 5 2 3 5 40 TCGA-DX-AB2F-01A-11R-A38C-07 ELK3~TSPAN8 fusion "ELK3," "TSPAN8," chr12~chr12 96588483 71676593 4 +- 1.386294 2 1 1 2 2282 TCGA-DX-AB2F-01A-11R-A38C-07 ELK3~TSPAN8 fusion "ELK3," "TSPAN8," chr12~chr12 96588483 71676599 850 +- 3.177444 524 370 154 524 2324 TCGA-DX-AB2F-01A-11R-A38C-07 ELK3~TSPAN8 fusion "ELK3," "TSPAN8," chr12~chr12 96588483 71709167 71 +- 3.199589 63 27 36 63 2422 TCGA-DX-AB2F-01A-11R-A38C-07 FNDC3B~FGF12 fusion "FNDC3B," "FGF12," chr3~chr3 171851336 192078327 33 +- 2.550896 27 16 11 27 52 TCGA-DX-AB2F-01A-11R-A38C-07 FRS2~C12orf63 fusion "FRS2," "C12orf63," chr12~chr12 69931763 96934615 3 ++ 1.098612 3 2 1 3 24 TCGA-DX-AB2F-01A-11R-A38C-07 FRS2~C12orf63 fusion "FRS2," "C12orf63," chr12~chr12 69925836 96934615 4 ++ 1.386294 4 2 2 4 22 TCGA-DX-AB2F-01A-11R-A38C-07 HIVEP2~C12orf28 fusion "HIVEP2," "C12orf28," chr6~chr12 143158072 70320351 10 -+ 1.695743 9 9 0 9 30 TCGA-DX-AB2F-01A-11R-A38C-07 HLA-B~Nchr6~29902006 intergenic "HLA-B," "-," chr6~chr6 31323352 29902006 2 ++ 0.693147 1 1 0 1 56 TCGA-DX-AB2F-01A-11R-A38C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 303 -- 2.687875 303 303 0 303 88 TCGA-DX-AB2F-01A-11R-A38C-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32486403 32548633 2 -- 0.693147 2 2 0 2 30 TCGA-DX-AB2F-01A-11R-A38C-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 89 -- 2.362217 47 14 31 47 6 TCGA-DX-AB2F-01A-11R-A38C-07 IGF2~COL1A1 fusion "IGF2,AC132217.4,IGF2," "COL1A1," chr11~chr17 2150670 48262475 2 -- 0.693147 2 1 1 2 2 TCGA-DX-AB2F-01A-11R-A38C-07 KDM4B~Nchr19~57996691 intergenic "KDM4B," "-," chr19~chr19 5138081 57996691 7 +- 1.747868 6 5 1 6 20 TCGA-DX-AB2F-01A-11R-A38C-07 KDM4B~Nchr19~57996955 intergenic "KDM4B," "-," chr19~chr19 5138081 57996955 6 +- 1.791759 6 3 3 6 18 TCGA-DX-AB2F-01A-11R-A38C-07 LAMA5~AC079613.1 fusion "LAMA5," "AC079613.1," chr20~chr2 60937456 189465336 6 -- 1.56071 5 3 2 5 4 TCGA-DX-AB2F-01A-11R-A38C-07 LEMD3~KCNC2 fusion "LEMD3," "KCNC2," chr12~chr12 65612399 75445097 42 +- 2.804738 41 9 32 41 130 TCGA-DX-AB2F-01A-11R-A38C-07 LEMD3~KCNC2 fusion "LEMD3," "KCNC2," chr12~chr12 65612399 75554549 20 +- 2.761626 19 6 13 19 26 TCGA-DX-AB2F-01A-11R-A38C-07 LGR5~TSPAN8 fusion "LGR5," "TSPAN8," chr12~chr12 71834072 71551567 3 +- 1.098612 3 1 2 3 4 TCGA-DX-AB2F-01A-11R-A38C-07 LGR5~TSPAN8 fusion "LGR5," "TSPAN8," chr12~chr12 71834072 71676599 3 +- 1.098612 3 3 0 3 8 TCGA-DX-AB2F-01A-11R-A38C-07 LTA4H~Nchr12~75209094 intergenic "LTA4H," "-," chr12~chr12 96400092 75209094 491 -+ 3.104869 474 135 339 474 1272 TCGA-DX-AB2F-01A-11R-A38C-07 LTA4H~Nchr12~75218273 intergenic "LTA4H," "-," chr12~chr12 96400092 75218273 3 -+ 1.098612 3 2 1 3 4 TCGA-DX-AB2F-01A-11R-A38C-07 MAGT1~COX7B fusion "MAGT1," "COX7B," chrX~chrX 77084528 77160681 3 -+ 1.098612 3 2 1 3 22 TCGA-DX-AB2F-01A-11R-A38C-07 MAN1A1~COX7B fusion "MAN1A1," "COX7B," chr6~chrX 119611848 77160681 5 -+ 0.950271 5 1 4 5 4 TCGA-DX-AB2F-01A-11R-A38C-07 MAN1A1~MAGT1 fusion "MAN1A1," "MAGT1," chr6~chrX 119611848 77086392 16 -- 2.273966 14 7 7 14 12 TCGA-DX-AB2F-01A-11R-A38C-07 MDM2~FRS2 fusion "MDM2," "FRS2," chr12~chr12 69218431 69924645 8 ++ 1.732868 8 5 3 8 14 TCGA-DX-AB2F-01A-11R-A38C-07 NAV3~CDH4 fusion "NAV3," "CDH4," chr12~chr20 78553066 60469966 36 ++ 2.819144 31 13 17 31 54 TCGA-DX-AB2F-01A-11R-A38C-07 NAV3~CYSLTR1 fusion "NAV3," "CYSLTR1," chr12~chrX 78452895 77582936 30 +- 2.49504 29 15 14 29 58 TCGA-DX-AB2F-01A-11R-A38C-07 NAV3~Nchr12~73510416 intergenic "NAV3," "-," chr12~chr12 78452895 73510416 4 +- 1.039721 4 4 0 4 10 TCGA-DX-AB2F-01A-11R-A38C-07 NAV3~NchrX~82163258 intergenic "NAV3," "-," chr12~chrX 78452895 82163258 343 ++ 3.173718 330 179 150 330 978 TCGA-DX-AB2F-01A-11R-A38C-07 NEGR1~Nchr1~71726904 intergenic "NEGR1," "-," chr1~chr1 72058500 71726904 14 -- 2.168223 14 11 3 14 20 TCGA-DX-AB2F-01A-11R-A38C-07 Nchr10~77530612~C10orf11 intergenic "-," "C10orf11," chr10~chr10 77530612 77795766 6 ++ 1.329661 6 0 6 6 12 TCGA-DX-AB2F-01A-11R-A38C-07 Nchr11~74457132~Nchr11~74457203 intergenic "-," "-," chr11~chr11 74457132 74457203 2 -- 0.693147 2 2 0 2 2 TCGA-DX-AB2F-01A-11R-A38C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 46 -+ 2.467907 14 0 14 14 18 TCGA-DX-AB2F-01A-11R-A38C-07 Nchr12~71833099~TSPAN8 intergenic "-," "TSPAN8," chr12~chr12 71833099 71551567 2 +- 0.693147 2 1 1 2 4 TCGA-DX-AB2F-01A-11R-A38C-07 Nchr12~77587776~TUBGCP3 intergenic "-," "TUBGCP3," chr12~chr13 77587776 113208155 10 ++ 2.302585 9 4 5 9 26 TCGA-DX-AB2F-01A-11R-A38C-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 4 -- 1.386294 3 0 3 3 2 TCGA-DX-AB2F-01A-11R-A38C-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 3 ++ 0.636514 3 0 3 3 22 TCGA-DX-AB2F-01A-11R-A38C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 66 -+ 3.066863 63 40 23 63 254 TCGA-DX-AB2F-01A-11R-A38C-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 2 ++ 0.693147 1 0 1 1 28 TCGA-DX-AB2F-01A-11R-A38C-07 Nchr5~44395451~Nchr5~44615143 intergenic "-," "-," chr5~chr5 44395451 44615143 4 ++ 1.386294 4 4 0 4 4 TCGA-DX-AB2F-01A-11R-A38C-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 9 ++ 1.676988 9 9 0 9 6 TCGA-DX-AB2F-01A-11R-A38C-07 Nchr6~29855732~HLA-C intergenic "-," "HLA-C," chr6~chr6 29855732 31239498 2 -- 0.693147 1 0 1 1 4 TCGA-DX-AB2F-01A-11R-A38C-07 OS9~COX7B fusion "OS9," "COX7B," chr12~chrX 58089626 77154974 9 ++ 2.043192 6 6 0 6 32 TCGA-DX-AB2F-01A-11R-A38C-07 OS9~COX7B fusion "OS9," "COX7B," chr12~chrX 58089821 77154974 5 ++ 1.609438 4 4 0 4 84 TCGA-DX-AB2F-01A-11R-A38C-07 OS9~COX7B fusion "OS9," "COX7B," chr12~chrX 58090156 77154974 321 ++ 2.997784 221 152 69 221 384 TCGA-DX-AB2F-01A-11R-A38C-07 PDHX~Nchr19~2727831 intergenic "PDHX," "-," chr11~chr19 34991833 2727831 3 ++ 0.636514 3 1 2 3 6 TCGA-DX-AB2F-01A-11R-A38C-07 PTPRR~FAM19A2 fusion "PTPRR," "FAM19A2," chr12~chr12 71139598 62417560 2 -- 0.693147 2 0 2 2 4 TCGA-DX-AB2F-01A-11R-A38C-07 PTPRR~FAM19A2 fusion "PTPRR," "FAM19A2," chr12~chr12 71139598 62448243 6 -- 1.56071 6 4 2 6 14 TCGA-DX-AB2F-01A-11R-A38C-07 R3HDM2~RAP1B fusion "R3HDM2," "RAP1B," chr12~chr12 57789532 69042479 119 -+ 2.894999 81 25 56 81 302 TCGA-DX-AB2F-01A-11R-A38C-07 R3HDM2~RAP1B fusion "R3HDM2," "RAP1B," chr12~chr12 57789532 69044180 2 -+ 0.693147 1 1 0 1 30 TCGA-DX-AB2F-01A-11R-A38C-07 RP11-123O10.4~ACVR1 fusion "RP11-123O10.4," "ACVR1," chr12~chr2 67462830 158675071 4 -- 1.039721 4 1 3 4 4 TCGA-DX-AB2F-01A-11R-A38C-07 RP11-150C16.1~RP11-136F16.1 fusion "RP11-150C16.1," "RP11-136F16.1," chr12~chr12 59315253 78450124 2 +- 0.693147 2 1 1 2 8 TCGA-DX-AB2F-01A-11R-A38C-07 RP11-320P7.2~MDM2 fusion "RP11-320P7.2," "MDM2," chr12~chr12 70574318 69202988 3 ++ 1.098612 3 1 2 3 4 TCGA-DX-AB2F-01A-11R-A38C-07 RP11-324P9.1~Nchr12~67781224 intergenic "RP11-324P9.1," "-," chr12~chr12 69616391 67781224 17 ++ 2.231607 15 9 6 15 54 TCGA-DX-AB2F-01A-11R-A38C-07 RP11-324P9.1~Nchr12~67792611 intergenic "RP11-324P9.1," "-," chr12~chr12 69616391 67792611 2 ++ 0.693147 1 0 1 1 4 TCGA-DX-AB2F-01A-11R-A38C-07 RP11-324P9.1~Nchr12~67792839 intergenic "RP11-324P9.1," "-," chr12~chr12 69616391 67792839 3 ++ 1.098612 3 2 1 3 4 TCGA-DX-AB2F-01A-11R-A38C-07 RP11-536G4.2~CPM fusion "RP11-536G4.2," "CPM," chr12~chr12 96226795 69265736 2 -- 0.693147 2 2 0 2 24 TCGA-DX-AB2F-01A-11R-A38C-07 RP11-536G4.2~CPM fusion "RP11-536G4.2," "CPM," chr12~chr12 96226795 69279665 6 -- 1.56071 6 2 4 6 96 TCGA-DX-AB2F-01A-11R-A38C-07 RP11-536G4.2~CPM fusion "RP11-536G4.2," "CPM," chr12~chr12 96226795 69279669 30 -- 2.574632 29 20 9 29 96 TCGA-DX-AB2F-01A-11R-A38C-07 RP11-571M6.15~Nchr12~77557072 intergenic "METTL21B,RP11-571M6.15," "-," chr12~chr12 58166856 77557072 4 ++ 1.386294 4 1 3 4 38 TCGA-DX-AB2F-01A-11R-A38C-07 RP11-571M6.15~Nchr12~77557072 intergenic "METTL21B,RP11-571M6.15," "-," chr12~chr12 58166911 77557072 51 ++ 2.811764 52 25 26 52 66 TCGA-DX-AB2F-01A-11R-A38C-07 SAMM50~PIP4K2C fusion "SAMM50," "PIP4K2C," chr22~chr12 44360433 57987808 7 ++ 1.549826 7 2 5 7 12 TCGA-DX-AB2F-01A-11R-A38C-07 SASH1~Nchr5~44542692 intergenic "SASH1," "-," chr6~chr5 148711398 44542692 5 ++ 1.609438 5 2 3 5 6 TCGA-DX-AB2F-01A-11R-A38C-07 SASH1~Nchr5~44587577 intergenic "SASH1," "-," chr6~chr5 148711398 44587577 7 ++ 1.747868 6 2 4 6 4 TCGA-DX-AB2F-01A-11R-A38C-07 SASH1~Nchr5~44615143 intergenic "SASH1," "-," chr6~chr5 148711398 44615143 3 ++ 1.098612 2 1 1 2 2 TCGA-DX-AB2F-01A-11R-A38C-07 SRGAP1~Nchr12~69585235 intergenic "SRGAP1," "-," chr12~chr12 64238663 69585235 5 ++ 1.332179 4 3 1 4 12 TCGA-DX-AB2F-01A-11R-A38C-07 TBC1D15~Nchr6~166237691 intergenic "TBC1D15," "-," chr12~chr6 72266783 166237691 4 +- 1.386294 4 2 2 4 10 TCGA-DX-AB2F-01A-11R-A38C-07 TBC1D15~Nchr6~166237691 intergenic "TBC1D15," "-," chr12~chr6 72278801 166237691 17 +- 2.282374 16 11 5 16 66 TCGA-DX-AB2F-01A-11R-A38C-07 TBC1D15~Nchr6~166237691 intergenic "TBC1D15," "-," chr12~chr6 72274387 166237691 8 +- 1.732868 8 6 2 8 32 TCGA-DX-AB2F-01A-11R-A38C-07 TPST1~GS1-124K5.4 fusion "TPST1," "GS1-124K5.4," chr7~chr7 65751696 65960242 2 ++ 0.693147 2 1 1 2 4 TCGA-DX-AB2F-01A-11R-A38C-07 UHRF1BP1L~TRHDE fusion "UHRF1BP1L," "TRHDE," chr12~chr12 100536370 72680461 48 -+ 2.481458 46 31 15 46 78 TCGA-DX-AB2F-01A-11R-A38C-07 UST~NchrX~77308540 intergenic "UST,RP11-162J8.2," "-," chr6~chrX 149285699 77308540 8 ++ 2.079442 6 3 3 6 4 TCGA-DX-AB2F-01A-11R-A38C-07 UST~PGK1 fusion "UST,RP11-162J8.2," "PGK1," chr6~chrX 149285699 77365364 4 ++ 1.386294 4 1 3 4 8 TCGA-DX-AB2F-01A-11R-A38C-07 ZDHHC14~TSPAN8 fusion "ZDHHC14," "TSPAN8," chr6~chr12 157803298 71676599 9 +- 1.427061 5 3 2 5 24 TCGA-DX-AB2F-01A-11R-A38C-07 ZNF131~Nchr13~113119672 intergenic "ZNF131," "-," chr5~chr13 43068319 113119672 6 ++ 1.56071 6 3 3 6 10 TCGA-3B-A9HI-01A-11R-A38C-07 BRIP1~Nchr17~50937261 intergenic "BRIP1," "-," chr17~chr17 59934419 50937261 2 -+ 0.693147 2 1 1 2 16 TCGA-3B-A9HI-01A-11R-A38C-07 CCT3~RP11-280O1.2 fusion "CCT3," "RP11-280O1.2," chr1~chr1 156303338 165451844 3 -- 1.098612 3 1 2 3 6 TCGA-3B-A9HI-01A-11R-A38C-07 CCT3~RP11-280O1.2 fusion "CCT3," "RP11-280O1.2," chr1~chr1 156303338 165459766 5 -- 1.332179 5 4 1 5 6 TCGA-3B-A9HI-01A-11R-A38C-07 GXYLT1~Nchr4~120776024 intergenic "GXYLT1," "-," chr12~chr4 42491244 120776024 9 -+ 1.735126 9 6 3 9 42 TCGA-3B-A9HI-01A-11R-A38C-07 KIAA0195~LRRC52 fusion "KIAA0195," "LRRC52," chr17~chr1 73468010 165513908 5 ++ 1.609438 5 4 1 5 10 TCGA-3B-A9HI-01A-11R-A38C-07 KIAA0195~LRRC52 fusion "KIAA0195," "LRRC52," chr17~chr1 73468010 165532742 15 ++ 2.523211 15 7 8 15 14 TCGA-3B-A9HI-01A-11R-A38C-07 Nchr11~12398281~NAV2 intergenic "-," "NAV2," chr11~chr11 12398281 19854977 2 +- 0.693147 2 1 1 2 4 TCGA-3B-A9HI-01A-11R-A38C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 8 -+ 1.906155 2 0 2 2 6 TCGA-3B-A9HI-01A-11R-A38C-07 Nchr20~46920170~Nchr10~67001895 intergenic "-," "-," chr20~chr10 46920170 67001895 3 -- 1.098612 3 2 1 3 6 TCGA-3B-A9HI-01A-11R-A38C-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 3 +- 0.636514 3 0 3 3 2 TCGA-3B-A9HI-01A-11R-A38C-07 SPRED1~Nchr15~39179130 intergenic "SPRED1," "-," chr15~chr15 38545418 39179130 5 +- 1.609438 4 1 3 4 8 TCGA-3B-A9HJ-01A-11R-A38C-07 AC096579.13~NchrY~13629437 intergenic "IGKJ2,AC096579.13," "-," chr2~chrY 89161070 13629437 16 ++ 2.393312 8 8 0 8 248 TCGA-3B-A9HJ-01A-11R-A38C-07 AC096579.7~Nchr14~106134679 intergenic "IGKC,AC096579.7," "-," chr2~chr14 89156855 106134679 9 +- 1.497866 10 9 0 10 34 TCGA-3B-A9HJ-01A-11R-A38C-07 AC096579.7~Nchr2~89197465 intergenic "AC096579.7,IGKJ1,AC096579.7," "-," chr2~chr2 89161398 89197465 2 -+ 0.693147 2 0 2 2 2 TCGA-3B-A9HJ-01A-11R-A38C-07 AGAP2~Nchr12~89624429 intergenic "AGAP2," "-," chr12~chr12 58127809 89624429 13 -- 2.098147 13 7 6 13 16 TCGA-3B-A9HJ-01A-11R-A38C-07 AGAP2~Nchr12~89667573 intergenic "AGAP2," "-," chr12~chr12 58127809 89667573 9 -- 2.197225 9 3 6 9 20 TCGA-3B-A9HJ-01A-11R-A38C-07 AGAP2~Nchr12~89703235 intergenic "AGAP2," "-," chr12~chr12 58127809 89703235 2 -- 0.693147 2 2 0 2 2 TCGA-3B-A9HJ-01A-11R-A38C-07 AGAP2~Nchr12~89704740 intergenic "AGAP2," "-," chr12~chr12 58127809 89704740 6 -- 1.56071 6 4 2 6 18 TCGA-3B-A9HJ-01A-11R-A38C-07 C3~Nchr19~9323846 intergenic "C3," "-," chr19~chr19 6707087 9323846 55 -+ 3.021179 59 24 31 59 102 TCGA-3B-A9HJ-01A-11R-A38C-07 EMR1~LYZ fusion "EMR1," "LYZ," chr19~chr12 6928222 69746933 2 ++ 0.693147 2 1 1 2 6 TCGA-3B-A9HJ-01A-11R-A38C-07 FRS2~CDK4 fusion "FRS2," "CDK4," chr12~chr12 69931763 58145519 6 +- 1.791759 6 4 2 6 22 TCGA-3B-A9HJ-01A-11R-A38C-07 FRS2~CDK4 fusion "FRS2," "CDK4," chr12~chr12 69925836 58145519 5 +- 1.332179 5 4 1 5 18 TCGA-3B-A9HJ-01A-11R-A38C-07 FRS2~EMR1 fusion "FRS2," "EMR1," chr12~chr19 69864310 6926377 3 ++ 0.636514 3 3 0 3 16 TCGA-3B-A9HJ-01A-11R-A38C-07 FRS2~FBRSL1 fusion "FRS2," "FBRSL1," chr12~chr12 69864310 133124589 3 ++ 1.098612 3 2 1 3 8 TCGA-3B-A9HJ-01A-11R-A38C-07 FRS2~Nchr12~63492057 intergenic "FRS2," "-," chr12~chr12 69864310 63492057 2 ++ 0.693147 2 1 1 2 14 TCGA-3B-A9HJ-01A-11R-A38C-07 GNAS~Nchr12~66151389 intergenic "GNAS," "-," chr20~chr12 57478640 66151389 12 ++ 1.979205 12 6 6 12 16 TCGA-3B-A9HJ-01A-11R-A38C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 405 -- 2.263104 403 403 0 403 100 TCGA-3B-A9HJ-01A-11R-A38C-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489801 32552130 2 -- 0.693147 2 0 2 2 522 TCGA-3B-A9HJ-01A-11R-A38C-07 HMGA2~Nchr12~91652336 intergenic "HMGA2," "-," chr12~chr12 66232349 91652336 74 +- 2.664016 72 68 4 72 50 TCGA-3B-A9HJ-01A-11R-A38C-07 IGHG1~IGHG3 fusion "IGHG1," "IGHG3," chr14~chr14 106208678 106236323 112 -- 2.407558 152 95 8 152 10 TCGA-3B-A9HJ-01A-11R-A38C-07 IGHG4~AC096579.7 fusion "IGHG4," "IGKC,AC096579.7," chr14~chr2 106091233 89157011 2 -- 0.693147 2 1 1 2 34 TCGA-3B-A9HJ-01A-11R-A38C-07 IGHG4~IGHG1 fusion "IGHG4," "IGHG1," chr14~chr14 106091233 106208305 15 -- 1.870569 9 5 2 9 198 TCGA-3B-A9HJ-01A-11R-A38C-07 IGHG4~IGLL5 fusion "IGHG4," "IGLL5,IGLC1," chr14~chr22 106091233 23237689 45 -+ 0.751377 45 43 0 45 14 TCGA-3B-A9HJ-01A-11R-A38C-07 IGHJ3~AL928742.12 fusion "IGHJ3," "IGHE,AL928742.12,RP11-731F5.1," chr14~chr14 106330797 106068064 7 -- 1.747868 3 1 2 3 2 TCGA-3B-A9HJ-01A-11R-A38C-07 IGHJ5~IGHG2 fusion "IGHJ5," "IGHG2," chr14~chr14 106330024 106110440 2 -- 0.693147 1 1 0 1 6 TCGA-3B-A9HJ-01A-11R-A38C-07 IGHM~Nchr14~106318587 intergenic "IGHM," "-," chr14~chr14 106320535 106318587 3 +- 1.098612 3 1 2 3 24 TCGA-3B-A9HJ-01A-11R-A38C-07 IGHV1-2~IGHV1-46 fusion "IGHV1-2," "IGHV1-46," chr14~chr14 106452925 106967507 2 -- 0.693147 2 0 2 2 14 TCGA-3B-A9HJ-01A-11R-A38C-07 IGHV1-3~IGHG1 fusion "IGHV1-3," "IGHG1," chr14~chr14 106471636 106208722 2 -- 0.693147 2 0 2 2 80 TCGA-3B-A9HJ-01A-11R-A38C-07 IGHV3-21~IGHG1 fusion "IGHV3-21," "IGHG1," chr14~chr14 106692079 106209407 5 -- 1.609438 5 3 2 5 14 TCGA-3B-A9HJ-01A-11R-A38C-07 IGHV3-23~IGHA1 fusion "IGHV3-23," "IGHA1," chr14~chr14 106725609 106175001 5 -- 0.950271 3 2 1 3 8 TCGA-3B-A9HJ-01A-11R-A38C-07 IGHV3-23~IGHA2 fusion "IGHV3-23," "IGHA2," chr14~chr14 106725609 106054731 11 -- 1.972247 4 4 0 4 10 TCGA-3B-A9HJ-01A-11R-A38C-07 IGHV3-23~IGHG1 fusion "IGHV3-23," "IGHG1," chr14~chr14 106725609 106209407 2 -- 0.693147 2 1 1 2 36 TCGA-3B-A9HJ-01A-11R-A38C-07 IGHV3-23~IGHM fusion "IGHV3-23," "IGHM," chr14~chr14 106725609 106322322 3 -- 1.098612 3 2 1 3 10 TCGA-3B-A9HJ-01A-11R-A38C-07 IGHV3-23~IGHV3-49 fusion "IGHV3-23," "IGHV3-49," chr14~chr14 106725609 107013248 58 -- 2.068121 47 44 3 47 20 TCGA-3B-A9HJ-01A-11R-A38C-07 IGHV3-9~IGHA1 fusion "IGHV3-9," "IGHA1," chr14~chr14 106552654 106175001 5 -- 1.332179 4 0 4 4 34 TCGA-3B-A9HJ-01A-11R-A38C-07 IGHV3-9~IGHG1 fusion "IGHV3-9," "IGHG1," chr14~chr14 106552434 106209407 6 -- 1.56071 6 2 4 6 138 TCGA-3B-A9HJ-01A-11R-A38C-07 IGHV3-9~IGHG1 fusion "IGHV3-9," "IGHG1," chr14~chr14 106552684 106209407 2 -- 0.693147 1 1 0 1 26 TCGA-3B-A9HJ-01A-11R-A38C-07 IGHV3-9~IGHM fusion "IGHV3-9," "IGHM," chr14~chr14 106552684 106322322 3 -- 0.636514 3 2 1 3 4 TCGA-3B-A9HJ-01A-11R-A38C-07 IGHV4-31~IGHG1 fusion "IGHV4-31," "IGHG1," chr14~chr14 106805415 106209407 13 -- 2.204785 9 9 0 9 138 TCGA-3B-A9HJ-01A-11R-A38C-07 IGHV4-34~IGHG1 fusion "IGHV4-34," "IGHG1," chr14~chr14 106829882 106209407 2 -- 0.693147 1 0 1 1 20 TCGA-3B-A9HJ-01A-11R-A38C-07 IGHV4-34~IGHG1 fusion "IGHV4-34," "IGHG1," chr14~chr14 106829809 106209407 3 -- 0.636514 3 0 3 3 50 TCGA-3B-A9HJ-01A-11R-A38C-07 IGHV5-51~IGHG1 fusion "IGHV5-51," "IGHG1," chr14~chr14 107035077 106209407 14 -- 2.143952 8 5 3 8 52 TCGA-3B-A9HJ-01A-11R-A38C-07 IGKV1-5~Nchr2~114164227 intergenic "IGKV1-5," "-," chr2~chr2 89247028 114164227 7 -- 1.94591 4 4 0 4 8 TCGA-3B-A9HJ-01A-11R-A38C-07 IGKV1-9~Nchr2~114164227 intergenic "IGKV1-9," "-," chr2~chr2 89309688 114164227 4 -- 1.386294 1 1 0 1 4 TCGA-3B-A9HJ-01A-11R-A38C-07 IGKV5-2~AC096579.7 fusion "IGKV5-2," "IGKC,AC096579.7," chr2~chr2 89197212 89157196 6 +- 1.791759 6 6 0 6 110 TCGA-3B-A9HJ-01A-11R-A38C-07 IGKV5-2~AC096579.7 fusion "IGKV5-2," "IGKC,AC096579.7," chr2~chr2 89196859 89157196 24 +- 2.589903 24 15 9 24 248 TCGA-3B-A9HJ-01A-11R-A38C-07 IGLL5~Nchr22~23257852 intergenic "IGLL5,IGLC1," "-," chr22~chr22 23237566 23257852 0 -- 0.693147 2 0 0 2 28 TCGA-3B-A9HJ-01A-11R-A38C-07 IGLV1-44~LL22NC03-80A10.6 fusion "IGLV1-44," "LL22NC03-80A10.6,IGLV1-51," chr22~chr22 22735294 22677019 49 ++ 2.183838 7 0 7 7 2 TCGA-3B-A9HJ-01A-11R-A38C-07 IGLV1-47~LL22NC03-80A10.6 fusion "IGLV1-47," "LL22NC03-80A10.6,IGLV1-51," chr22~chr22 22712188 22677019 6 ++ 1.56071 6 6 0 6 4 TCGA-3B-A9HJ-01A-11R-A38C-07 IGLV1-51~IGLJ2 fusion "IGLV1-51," "IGLJ2," chr22~chr22 22677320 23241796 228 ++ 2.230542 218 13 203 218 14600 TCGA-3B-A9HJ-01A-11R-A38C-07 NUP107~NDUFA4L2 fusion "NUP107," "NDUFA4L2," chr12~chr12 69128613 57631118 2 +- 0.693147 1 0 1 1 6 TCGA-3B-A9HJ-01A-11R-A38C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 59 -+ 2.409942 26 0 26 26 26 TCGA-3B-A9HJ-01A-11R-A38C-07 Nchr12~95211866~TMCC3 intergenic "-," "TMCC3," chr12~chr12 95211866 94976314 2 -- 0.693147 2 2 0 2 10 TCGA-3B-A9HJ-01A-11R-A38C-07 Nchr14~22321003~AE000661.28 intergenic "-," "AE000661.28,TRAC," chr14~chr14 22321003 23016447 2 ++ 0.693147 2 1 1 2 4 TCGA-3B-A9HJ-01A-11R-A38C-07 Nchr15~22466448~IGHG1 intergenic "-," "IGHG1," chr15~chr14 22466448 106208722 14 -- 1.809514 12 12 0 12 4 TCGA-3B-A9HJ-01A-11R-A38C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 13 -+ 2.458311 12 5 7 12 82 TCGA-3B-A9HJ-01A-11R-A38C-07 Nchr1~35816325~RPL5 intergenic "-," "RPL5," chr1~chr1 35816325 93299015 6 -- 1.56071 1 1 0 1 2 TCGA-3B-A9HJ-01A-11R-A38C-07 Nchr22~22380946~IGLJ3 intergenic "-," "IGLJ3," chr22~chr22 22380946 23247166 54 ++ 2.191317 51 9 42 51 1932 TCGA-3B-A9HJ-01A-11R-A38C-07 Nchr2~177065785~Nchr2~177065913 intergenic "-," "-," chr2~chr2 177065785 177065913 2 -- 0.693147 2 0 2 2 2 TCGA-3B-A9HJ-01A-11R-A38C-07 Nchr2~177065929~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065929 177065788 3 ++ 1.098612 3 0 3 3 42 TCGA-3B-A9HJ-01A-11R-A38C-07 Nchr7~140912504~Nchr7~141137408 intergenic "-," "-," chr7~chr7 140912504 141137408 2 ++ 0.693147 2 1 1 2 2 TCGA-3B-A9HJ-01A-11R-A38C-07 OSBPL8~RP11-54A9.1 fusion "OSBPL8," "RP11-54A9.1," chr12~chr12 76953177 76685896 160 -+ 2.936057 147 75 72 147 278 TCGA-3B-A9HJ-01A-11R-A38C-07 PDE3A~AC096579.7 fusion "PDE3A," "IGKC,AC096579.7," chr12~chr2 20704505 89156895 3 +- 0.636514 3 1 2 3 38 TCGA-3B-A9HJ-01A-11R-A38C-07 RBM38~LSM7 fusion "RBM38," "LSM7," chr20~chr19 55968389 2324191 8 +- 1.667462 8 2 6 8 114 TCGA-3B-A9HJ-01A-11R-A38C-07 RBM38~LSM7 fusion "RBM38," "LSM7," chr20~chr19 55968389 2324195 26 +- 2.47138 25 11 14 25 124 TCGA-3B-A9HJ-01A-11R-A38C-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 5 ++ 1.332179 5 4 1 5 16 TCGA-3B-A9HJ-01A-11R-A38C-07 RPS9~Nchr19~50223193 intergenic "RPS9," "-," chr19~chr19 54705392 50223193 3 ++ 1.098612 3 2 1 3 134 TCGA-3B-A9HJ-01A-11R-A38C-07 SLC16A7~Nchr12~68267405 intergenic "SLC16A7," "-," chr12~chr12 59990017 68267405 2 +- 0.693147 2 0 2 2 4 TCGA-3B-A9HJ-01A-11R-A38C-07 SRGAP1~Nchr12~88638155 intergenic "SRGAP1," "-," chr12~chr12 64238663 88638155 5 +- 1.05492 5 1 4 5 8 TCGA-3B-A9HJ-01A-11R-A38C-07 TRIP10~Nchr19~9317888 intergenic "TRIP10," "-," chr19~chr19 6751372 9317888 48 -- 2.816526 41 27 14 41 64 TCGA-3B-A9HJ-01A-11R-A38C-07 USP15~Nchr12~75315277 intergenic "USP15," "-," chr12~chr12 62696701 75315277 4 +- 1.386294 4 2 2 4 4 TCGA-3B-A9HQ-01A-11R-A38C-07 AC123023.1~AC018359.1 fusion "AC123023.1," "AC018359.1," chr3~chr3 34244800 34450753 8 ++ 1.906155 4 1 3 4 12 TCGA-3B-A9HQ-01A-11R-A38C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 393 -- 2.325848 392 391 1 392 120 TCGA-3B-A9HQ-01A-11R-A38C-07 ISOC1~Nchr5~128679362 intergenic "ISOC1," "-," chr5~chr5 128442755 128679362 16 ++ 2.393312 15 10 5 15 56 TCGA-3B-A9HQ-01A-11R-A38C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 75 -+ 2.649134 44 0 44 44 58 TCGA-3B-A9HQ-01A-11R-A38C-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 3 ++ 1.098612 3 1 2 3 6 TCGA-3B-A9HQ-01A-11R-A38C-07 Nchr17~13095975~MYOCD intergenic "-," "MYOCD," chr17~chr17 13095975 12608445 93 ++ 2.735139 90 50 40 90 322 TCGA-3B-A9HQ-01A-11R-A38C-07 Nchr17~13095975~MYOCD intergenic "-," "MYOCD," chr17~chr17 13095975 12608453 2 ++ 0.693147 2 1 1 2 284 TCGA-3B-A9HQ-01A-11R-A38C-07 Nchr17~13096804~MYOCD intergenic "-," "MYOCD," chr17~chr17 13096804 12608445 2 ++ 0.693147 2 2 0 2 2 TCGA-3B-A9HQ-01A-11R-A38C-07 Nchr18~20500725~Nchr18~20284883 intergenic "-," "-," chr18~chr18 20500725 20284883 3 -- 1.098612 3 1 2 3 2 TCGA-3B-A9HQ-01A-11R-A38C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 25 -+ 2.743635 24 16 6 24 126 TCGA-3B-A9HQ-01A-11R-A38C-07 Nchr2~139258325~Nchr2~139057107 intergenic "-," "-," chr2~chr2 139258325 139057107 3 -- 0.636514 3 0 3 3 2 TCGA-3B-A9HQ-01A-11R-A38C-07 Nchr3~187872040~LPP intergenic "-," "LPP," chr3~chr3 187872040 188123900 3 ++ 1.098612 3 0 3 3 2 TCGA-3B-A9HQ-01A-11R-A38C-07 Nchr3~34323838~Nchr3~34709629 intergenic "-," "-," chr3~chr3 34323838 34709629 2 ++ 0.693147 2 1 1 2 2 TCGA-3B-A9HQ-01A-11R-A38C-07 Nchr7~110514869~IMMP2L intergenic "-," "IMMP2L," chr7~chr7 110514869 110303777 3 -- 1.098612 3 0 3 3 14 TCGA-3B-A9HQ-01A-11R-A38C-07 Nchr7~20618404~Nchr7~20368479 intergenic "-," "-," chr7~chr7 20618404 20368479 9 -- 1.676988 9 3 6 9 20 TCGA-3B-A9HQ-01A-11R-A38C-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 108 ++ 2.179544 13 0 13 13 2 TCGA-3B-A9HQ-01A-11R-A38C-07 PSMD4~PIPSL fusion "PSMD4," "PIPSL," chr1~chr10 151239011 95718949 2 +- 0.693147 1 0 1 1 6 TCGA-3B-A9HQ-01A-11R-A38C-07 RB1~Nchr13~47717567 intergenic "RB1," "-," chr13~chr13 48955579 47717567 4 +- 1.386294 4 3 1 4 8 TCGA-3B-A9HP-01A-11R-A38C-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 4 +- 1.386294 4 4 0 4 2 TCGA-3B-A9HP-01A-11R-A38C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 141 -- 2.528444 141 141 0 141 88 TCGA-3B-A9HP-01A-11R-A38C-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 54 -- 2.169015 55 0 54 55 16 TCGA-3B-A9HP-01A-11R-A38C-07 HN1~Nchr2~174296244 intergenic "HN1," "-," chr17~chr2 73143651 174296244 25 -- 1.068358 14 14 0 14 2 TCGA-3B-A9HP-01A-11R-A38C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 23 -+ 2.607805 20 12 8 20 192 TCGA-3B-A9HP-01A-11R-A38C-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 2 ++ 0.693147 2 1 1 2 8 TCGA-3B-A9HP-01A-11R-A38C-07 STK3~Nchr18~567751 intergenic "STK3," "-," chr8~chr18 99837743 567751 2 -- 0.693147 2 1 1 2 12 TCGA-3B-A9HO-01A-11R-A38C-07 ABCG1~Nchr12~38811879 intergenic "ABCG1," "-," chr21~chr12 43697055 38811879 35 ++ 2.852105 34 11 23 34 42 TCGA-3B-A9HO-01A-11R-A38C-07 AC010859.1~KSR2 fusion "AC010859.1," "KSR2," chr8~chr12 97657630 118298236 11 +- 1.893788 11 9 2 11 12 TCGA-3B-A9HO-01A-11R-A38C-07 AC010859.1~Nchr12~91665158 intergenic "AC010859.1," "-," chr8~chr12 97657630 91665158 4 +- 1.039721 4 3 1 4 8 TCGA-3B-A9HO-01A-11R-A38C-07 AC010859.1~Nchr20~24114032 intergenic "AC010859.1," "-," chr8~chr20 97657630 24114032 4 ++ 1.386294 4 4 0 4 16 TCGA-3B-A9HO-01A-11R-A38C-07 ADAMTS5~Nchr12~68658901 intergenic "ADAMTS5," "-," chr21~chr12 28337607 68658901 3 -- 1.098612 3 3 0 3 16 TCGA-3B-A9HO-01A-11R-A38C-07 ADAMTS5~RP11-620J15.3 fusion "ADAMTS5," "RP11-620J15.3," chr21~chr12 28337607 58325520 80 -- 2.585513 78 42 36 78 112 TCGA-3B-A9HO-01A-11R-A38C-07 ADARB1~Nchr5~572452 intergenic "ADARB1," "-," chr21~chr5 46494708 572452 35 +- 2.485604 35 0 35 35 8 TCGA-3B-A9HO-01A-11R-A38C-07 ADAR~Nchr5~2278347 intergenic "ADAR," "-," chr1~chr5 154600331 2278347 5 -+ 1.332179 5 0 5 5 20 TCGA-3B-A9HO-01A-11R-A38C-07 ADAR~SUMO3 fusion "ADAR," "SUMO3," chr1~chr21 154600331 46229033 8 -- 1.906155 7 0 7 7 10 TCGA-3B-A9HO-01A-11R-A38C-07 AGAP2~Nchr12~66455089 intergenic "AGAP2," "-," chr12~chr12 58123422 66455089 5 -- 0.950271 5 4 1 5 4 TCGA-3B-A9HO-01A-11R-A38C-07 AGAP2~Nchr12~66457206 intergenic "AGAP2," "-," chr12~chr12 58123422 66457206 20 -- 2.596834 20 4 16 20 124 TCGA-3B-A9HO-01A-11R-A38C-07 AGAP2~Nchr12~66457410 intergenic "AGAP2," "-," chr12~chr12 58123422 66457410 33 -- 2.463902 33 18 15 33 112 TCGA-3B-A9HO-01A-11R-A38C-07 ALDH2~LIN7A fusion "ALDH2," "LIN7A," chr12~chr12 112204900 81242101 10 +- 1.470808 10 10 0 10 4 TCGA-3B-A9HO-01A-11R-A38C-07 ALDH2~LIN7A fusion "ALDH2," "LIN7A," chr12~chr12 112213524 81242101 2 +- 0.693147 2 2 0 2 6 TCGA-3B-A9HO-01A-11R-A38C-07 APP~Nchr21~46792183 intergenic "APP," "-," chr21~chr21 27326904 46792183 3 -- 1.098612 3 3 0 3 18 TCGA-3B-A9HO-01A-11R-A38C-07 ARHGEF1~Nchr5~2536619 intergenic "ARHGEF1," "-," chr19~chr5 42402736 2536619 3 +- 1.098612 3 0 3 3 6 TCGA-3B-A9HO-01A-11R-A38C-07 ATP2B1~C8orf34 fusion "ATP2B1," "C8orf34," chr12~chr8 90102373 69552611 2 -+ 0.693147 2 1 1 2 4 TCGA-3B-A9HO-01A-11R-A38C-07 ATP2B1~C8orf34 fusion "ATP2B1," "C8orf34," chr12~chr8 90102996 69621229 11 -+ 1.666333 8 1 7 8 16 TCGA-3B-A9HO-01A-11R-A38C-07 ATP2B1~C8orf34 fusion "ATP2B1," "C8orf34," chr12~chr8 90102996 69699678 6 -+ 1.56071 6 0 6 6 12 TCGA-3B-A9HO-01A-11R-A38C-07 ATP2B1~LIN7A fusion "ATP2B1," "LIN7A," chr12~chr12 90003714 81283148 8 -- 1.906155 5 3 2 5 2 TCGA-3B-A9HO-01A-11R-A38C-07 ATP2B1~Nchr12~55587346 intergenic "ATP2B1," "-," chr12~chr12 90035935 55587346 5 -+ 1.332179 5 3 2 5 4 TCGA-3B-A9HO-01A-11R-A38C-07 ATP2B1~Nchr12~67829296 intergenic "ATP2B1," "-," chr12~chr12 90049456 67829296 238 -- 3.043516 233 83 146 233 544 TCGA-3B-A9HO-01A-11R-A38C-07 ATP2B1~Nchr12~69817781 intergenic "ATP2B1," "-," chr12~chr12 90003714 69817781 13 -+ 2.458311 13 10 3 13 40 TCGA-3B-A9HO-01A-11R-A38C-07 ATP2B1~RBM19 fusion "ATP2B1," "RBM19," chr12~chr12 90102373 114282593 7 -- 1.94591 6 3 3 6 28 TCGA-3B-A9HO-01A-11R-A38C-07 ATP2B1~RBM19 fusion "ATP2B1," "RBM19," chr12~chr12 90102996 114282593 22 -- 2.260383 22 4 18 22 40 TCGA-3B-A9HO-01A-11R-A38C-07 C12orf29~Nchr12~54605316 intergenic "C12orf29," "-," chr12~chr12 88440753 54605316 3 ++ 1.098612 3 2 1 3 2 TCGA-3B-A9HO-01A-11R-A38C-07 C12orf40~MTERFD1 fusion "C12orf40," "MTERFD1," chr12~chr8 40148134 97270928 11 +- 2.145842 10 5 5 10 12 TCGA-3B-A9HO-01A-11R-A38C-07 C15orf57~CBX3 fusion "C15orf57," "CBX3," chr15~chr7 40854971 26241389 2 -+ 0.693147 2 0 2 2 2 TCGA-3B-A9HO-01A-11R-A38C-07 C21orf56~IGF1 fusion "C21orf56," "IGF1," chr21~chr12 47604270 102813468 23 -- 2.487258 23 22 1 23 74 TCGA-3B-A9HO-01A-11R-A38C-07 C8orf38~FAM19A2 fusion "C8orf38," "FAM19A2," chr8~chr12 95970407 62609135 2 +- 0.693147 2 0 2 2 32 TCGA-3B-A9HO-01A-11R-A38C-07 C8orf38~Nchr8~97638525 intergenic "C8orf38," "-," chr8~chr8 95970407 97638525 6 +- 1.791759 6 3 3 6 14 TCGA-3B-A9HO-01A-11R-A38C-07 C8orf38~RBM19 fusion "C8orf38," "RBM19," chr8~chr12 95970407 114282593 6 +- 1.791759 5 3 2 5 12 TCGA-3B-A9HO-01A-11R-A38C-07 CCDC38~Nchr12~110119505 intergenic "CCDC38," "-," chr12~chr12 96260845 110119505 2 -- 0.693147 2 2 0 2 2 TCGA-3B-A9HO-01A-11R-A38C-07 CDK4~KIAA1671 fusion "CDK4," "KIAA1671," chr12~chr22 58144439 25459258 5 -+ 1.609438 5 1 4 5 14 TCGA-3B-A9HO-01A-11R-A38C-07 CDK4~NCRNA00162 fusion "CDK4," "NCRNA00162," chr12~chr21 58145958 46419571 12 -- 2.138333 9 3 6 9 44 TCGA-3B-A9HO-01A-11R-A38C-07 CIT~CCDC38 fusion "CIT," "CCDC38," chr12~chr12 120306864 96263351 3 -- 0.636514 3 3 0 3 8 TCGA-3B-A9HO-01A-11R-A38C-07 CIT~LYZ fusion "CIT," "LYZ," chr12~chr12 120260624 69743888 20 -+ 2.527519 20 13 7 20 52 TCGA-3B-A9HO-01A-11R-A38C-07 CIT~LYZ fusion "CIT," "LYZ," chr12~chr12 120241010 69743888 3 -+ 1.098612 3 0 3 3 36 TCGA-3B-A9HO-01A-11R-A38C-07 COL6A1~RBM19 fusion "COL6A1," "RBM19," chr21~chr12 47414143 114261126 1208 +- 3.312725 1459 387 706 1459 2334 TCGA-3B-A9HO-01A-11R-A38C-07 COL6A1~RBM19 fusion "COL6A1," "RBM19," chr21~chr12 47414143 114265897 5 +- 1.609438 4 0 4 4 2670 TCGA-3B-A9HO-01A-11R-A38C-07 CORO1C~Nchr12~116108036 intergenic "CORO1C," "-," chr12~chr12 109051080 116108036 14 -+ 2.205598 13 10 3 13 34 TCGA-3B-A9HO-01A-11R-A38C-07 CPM~Nchr12~83959023 intergenic "CPM," "-," chr12~chr12 69290280 83959023 3 -- 1.098612 3 0 3 3 6 TCGA-3B-A9HO-01A-11R-A38C-07 CSTB~PDE9A fusion "CSTB," "PDE9A," chr21~chr21 45196085 44188298 2 -+ 0.693147 2 1 1 2 6 TCGA-3B-A9HO-01A-11R-A38C-07 CSTB~PDE9A fusion "CSTB," "PDE9A," chr21~chr21 45194539 44189137 3 -+ 0.636514 3 2 1 3 8 TCGA-3B-A9HO-01A-11R-A38C-07 CTDSP2~Nchr12~89309600 intergenic "CTDSP2," "-," chr12~chr12 58220129 89309600 218 -+ 3.057491 158 75 83 158 596 TCGA-3B-A9HO-01A-11R-A38C-07 CTDSP2~Nchr12~89309600 intergenic "CTDSP2," "-," chr12~chr12 58220779 89309600 6 -+ 1.791759 6 2 4 6 238 TCGA-3B-A9HO-01A-11R-A38C-07 CTDSP2~Nchr12~89326519 intergenic "CTDSP2," "-," chr12~chr12 58217317 89326519 412 -- 2.982561 164 163 0 164 40 TCGA-3B-A9HO-01A-11R-A38C-07 CTDSP2~Nchr12~89401901 intergenic "CTDSP2," "-," chr12~chr12 58220129 89401901 9 -+ 1.889159 8 4 4 8 12 TCGA-3B-A9HO-01A-11R-A38C-07 CTDSP2~Nchr21~31378284 intergenic "CTDSP2," "-," chr12~chr21 58220129 31378284 17 -- 1.83979 17 14 3 17 76 TCGA-3B-A9HO-01A-11R-A38C-07 DAP~MTERFD1 fusion "DAP," "MTERFD1," chr5~chr8 10761126 97251913 5 -- 1.332179 5 2 3 5 22 TCGA-3B-A9HO-01A-11R-A38C-07 DARS2~Nchr1~153484099 intergenic "DARS2," "-," chr1~chr1 173814429 153484099 8 ++ 1.494175 8 7 1 8 24 TCGA-3B-A9HO-01A-11R-A38C-07 DARS2~Nchr1~153505259 intergenic "DARS2," "-," chr1~chr1 173814429 153505259 2 ++ 0.693147 2 2 0 2 6 TCGA-3B-A9HO-01A-11R-A38C-07 DARS2~Nchr22~23155852 intergenic "DARS2," "-," chr1~chr22 173806184 23155852 4 +- 0.562335 4 1 3 4 8 TCGA-3B-A9HO-01A-11R-A38C-07 DDR2~CHD1L fusion "DDR2," "CHD1L," chr1~chr1 162625164 146724278 6 ++ 1.791759 5 2 3 5 14 TCGA-3B-A9HO-01A-11R-A38C-07 DNAH10~LIN7A fusion "DNAH10," "LIN7A," chr12~chr12 124323236 81239718 36 +- 2.705347 32 10 22 32 96 TCGA-3B-A9HO-01A-11R-A38C-07 FAIM2~C12orf40 fusion "FAIM2," "C12orf40," chr12~chr12 50282890 40110558 2 -+ 0.693147 2 0 2 2 6 TCGA-3B-A9HO-01A-11R-A38C-07 FAIM2~C12orf40 fusion "FAIM2," "C12orf40," chr12~chr12 50281169 40110558 10 -+ 1.834372 10 7 3 10 26 TCGA-3B-A9HO-01A-11R-A38C-07 FBXW8~Nchr12~73605279 intergenic "FBXW8," "-," chr12~chr12 117383333 73605279 2 +- 0.693147 2 0 2 2 20 TCGA-3B-A9HO-01A-11R-A38C-07 FBXW8~Nchr12~73626500 intergenic "FBXW8," "-," chr12~chr12 117383333 73626500 60 +- 2.762611 49 26 23 49 146 TCGA-3B-A9HO-01A-11R-A38C-07 FBXW8~XRCC6BP1 fusion "FBXW8," "XRCC6BP1," chr12~chr12 117372351 58345541 2 ++ 0.693147 2 1 1 2 18 TCGA-3B-A9HO-01A-11R-A38C-07 FBXW8~XRCC6BP1 fusion "FBXW8," "XRCC6BP1," chr12~chr12 117365932 58345541 12 ++ 2.210254 11 7 4 11 18 TCGA-3B-A9HO-01A-11R-A38C-07 FRS2~AVIL fusion "FRS2," "AVIL," chr12~chr12 69925836 58191778 10 +- 2.163956 6 6 0 6 120 TCGA-3B-A9HO-01A-11R-A38C-07 FRS2~AVIL fusion "FRS2," "AVIL," chr12~chr12 69931763 58193639 3 +- 0.636514 3 1 2 3 566 TCGA-3B-A9HO-01A-11R-A38C-07 FRS2~AVIL fusion "FRS2," "AVIL," chr12~chr12 69931763 58193703 468 +- 3.156026 429 268 156 429 1256 TCGA-3B-A9HO-01A-11R-A38C-07 FRS2~AVIL fusion "FRS2," "AVIL," chr12~chr12 69925836 58193703 33 +- 2.264547 28 8 17 28 426 TCGA-3B-A9HO-01A-11R-A38C-07 FRS2~AVIL fusion "FRS2," "AVIL," chr12~chr12 69925836 58194995 5 +- 1.332179 4 3 1 4 448 TCGA-3B-A9HO-01A-11R-A38C-07 FRS2~AVIL fusion "FRS2," "AVIL," chr12~chr12 69931763 58194995 49 +- 2.755647 45 32 13 45 1092 TCGA-3B-A9HO-01A-11R-A38C-07 FRS2~AVIL fusion "FRS2," "AVIL," chr12~chr12 69925836 58200322 2 +- 0.693147 2 2 0 2 2 TCGA-3B-A9HO-01A-11R-A38C-07 FRS2~Nchr12~132347596 intergenic "FRS2," "-," chr12~chr12 69864310 132347596 19 ++ 2.059229 19 4 15 19 160 TCGA-3B-A9HO-01A-11R-A38C-07 FRS2~Nchr12~132348456 intergenic "FRS2," "-," chr12~chr12 69864310 132348456 2 ++ 0.693147 2 2 0 2 64 TCGA-3B-A9HO-01A-11R-A38C-07 FRS2~Nchr12~132348493 intergenic "FRS2," "-," chr12~chr12 69864310 132348493 13 ++ 2.098147 13 11 2 13 62 TCGA-3B-A9HO-01A-11R-A38C-07 FRS2~Nchr12~132378010 intergenic "FRS2," "-," chr12~chr12 69864310 132378010 6 ++ 1.56071 6 5 1 6 28 TCGA-3B-A9HO-01A-11R-A38C-07 FRS2~Nchr12~69493498 intergenic "FRS2," "-," chr12~chr12 69925836 69493498 26 ++ 2.011634 18 10 8 18 84 TCGA-3B-A9HO-01A-11R-A38C-07 FRS2~Nchr12~69494876 intergenic "FRS2," "-," chr12~chr12 69925836 69494876 21 ++ 2.42548 18 10 8 18 34 TCGA-3B-A9HO-01A-11R-A38C-07 FRS2~Nchr12~92997698 intergenic "FRS2," "-," chr12~chr12 69925836 92997698 2 ++ 0.693147 1 0 1 1 12 TCGA-3B-A9HO-01A-11R-A38C-07 HLA-B~Nchr6~29902006 intergenic "HLA-B," "-," chr6~chr6 31323352 29902006 4 ++ 1.039721 4 4 0 4 154 TCGA-3B-A9HO-01A-11R-A38C-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489804 32552130 3 -- 0.636514 3 0 3 3 488 TCGA-3B-A9HO-01A-11R-A38C-07 HMGA2~Nchr12~125202551 intergenic "HMGA2," "-," chr12~chr12 66232349 125202551 15 ++ 1.84139 15 10 5 15 42 TCGA-3B-A9HO-01A-11R-A38C-07 KITLG~RP11-366L20.2 fusion "KITLG," "RP11-366L20.2," chr12~chr12 88898936 66245432 4 -- 1.039721 3 0 3 3 10 TCGA-3B-A9HO-01A-11R-A38C-07 KSR2~CEP290 fusion "KSR2," "CEP290," chr12~chr12 118198816 88444210 15 -- 2.153532 15 4 11 15 12 TCGA-3B-A9HO-01A-11R-A38C-07 LARGE~Nchr22~35976453 intergenic "LARGE," "-," chr22~chr22 33828147 35976453 5 -+ 1.609438 3 1 2 3 4 TCGA-3B-A9HO-01A-11R-A38C-07 LIN7A~NUP107 fusion "LIN7A," "NUP107," chr12~chr12 81283030 69135593 9 -+ 1.14906 5 4 1 5 20 TCGA-3B-A9HO-01A-11R-A38C-07 LIN7A~Nchr12~55587346 intergenic "LIN7A," "-," chr12~chr12 81239509 55587346 7 -+ 1.549826 7 0 7 7 24 TCGA-3B-A9HO-01A-11R-A38C-07 LIN7A~Nchr8~97407415 intergenic "LIN7A," "-," chr12~chr8 81253888 97407415 26 +- 2.373793 27 14 12 27 102 TCGA-3B-A9HO-01A-11R-A38C-07 LIN7A~RP11-125P18.1 fusion "LIN7A," "RP11-125P18.1," chr12~chr20 81239509 22054026 8 -+ 1.494175 8 2 6 8 6 TCGA-3B-A9HO-01A-11R-A38C-07 LIN7A~TMEM132D fusion "LIN7A," "TMEM132D," chr12~chr12 81283030 129569247 13 -- 1.818483 7 3 4 7 22 TCGA-3B-A9HO-01A-11R-A38C-07 MAPKAPK5~CCDC38 fusion "MAPKAPK5," "CCDC38," chr12~chr12 112280573 96263351 21 +- 2.623522 21 11 10 21 14 TCGA-3B-A9HO-01A-11R-A38C-07 MAPKAPK5~CCDC38 fusion "MAPKAPK5," "CCDC38," chr12~chr12 112280573 96266238 63 +- 2.65079 62 58 4 62 174 TCGA-3B-A9HO-01A-11R-A38C-07 MARCH6~NDUFA6 fusion "MARCH6," "NDUFA6," chr5~chr22 10359382 42483179 7 +- 1.549826 6 4 2 6 1080 TCGA-3B-A9HO-01A-11R-A38C-07 MARCH6~NDUFA6 fusion "MARCH6," "NDUFA6," chr5~chr22 10355154 42483179 4 +- 1.386294 3 3 0 3 6 TCGA-3B-A9HO-01A-11R-A38C-07 MARCH6~NDUFA6 fusion "MARCH6," "NDUFA6," chr5~chr22 10354029 42483179 670 +- 2.957099 658 290 367 658 1468 TCGA-3B-A9HO-01A-11R-A38C-07 MARCH9~Nchr12~125221687 intergenic "MARCH9," "-," chr12~chr12 58149668 125221687 22 ++ 2.19737 20 2 18 20 62 TCGA-3B-A9HO-01A-11R-A38C-07 MARCH9~Nchr12~125223320 intergenic "MARCH9," "-," chr12~chr12 58149668 125223320 13 ++ 1.925121 13 0 13 13 24 TCGA-3B-A9HO-01A-11R-A38C-07 MDM2~CPM fusion "MDM2," "CPM," chr12~chr12 69203072 69290396 26 +- 2.664532 24 14 10 24 38 TCGA-3B-A9HO-01A-11R-A38C-07 MDM2~Nchr12~83959023 intergenic "MDM2," "-," chr12~chr12 69203072 83959023 47 +- 2.981592 46 22 24 46 70 TCGA-3B-A9HO-01A-11R-A38C-07 MDM2~Nchr12~89435477 intergenic "MDM2," "-," chr12~chr12 69203072 89435477 4 ++ 1.039721 4 0 4 4 2 TCGA-3B-A9HO-01A-11R-A38C-07 MDM2~OS9 fusion "MDM2," "OS9," chr12~chr12 69203072 58109717 10 ++ 2.163956 10 5 5 10 128 TCGA-3B-A9HO-01A-11R-A38C-07 MDM2~OS9 fusion "MDM2," "OS9," chr12~chr12 69203072 58109872 13 ++ 2.069202 11 3 7 11 108 TCGA-3B-A9HO-01A-11R-A38C-07 MDM2~OS9 fusion "MDM2," "OS9," chr12~chr12 69203072 58109875 23 ++ 2.668079 23 9 14 23 102 TCGA-3B-A9HO-01A-11R-A38C-07 MDM2~OS9 fusion "MDM2," "OS9," chr12~chr12 69203072 58110195 10 ++ 1.973001 9 2 7 9 24 TCGA-3B-A9HO-01A-11R-A38C-07 MDM2~RP11-769N19.2 fusion "MDM2," "RP11-769N19.2," chr12~chr12 69218431 62534193 4 +- 1.386294 4 2 2 4 14 TCGA-3B-A9HO-01A-11R-A38C-07 MDM2~RP11-769N19.2 fusion "MDM2," "RP11-769N19.2," chr12~chr12 69218431 62539422 2 +- 0.693147 2 0 2 2 26 TCGA-3B-A9HO-01A-11R-A38C-07 MTERFD1~HSD17B6 fusion "MTERFD1," "HSD17B6," chr8~chr12 97263134 57167618 10 -+ 1.834372 10 5 5 10 16 TCGA-3B-A9HO-01A-11R-A38C-07 MYO10~NCRNA00316 fusion "MYO10," "NCRNA00316," chr5~chr21 16877718 46758793 22 -- 2.302759 17 10 7 17 24 TCGA-3B-A9HO-01A-11R-A38C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 75 -+ 2.50427 49 0 49 49 44 TCGA-3B-A9HO-01A-11R-A38C-07 Nchr12~108804360~LIN7A intergenic "-," "LIN7A," chr12~chr12 108804360 81283148 2 -- 0.693147 2 0 2 2 4 TCGA-3B-A9HO-01A-11R-A38C-07 Nchr12~125249719~CDK4 intergenic "-," "CDK4," chr12~chr12 125249719 58144548 5 -- 0.950271 5 4 1 5 12 TCGA-3B-A9HO-01A-11R-A38C-07 Nchr12~38797482~Nchr12~106453554 intergenic "-," "-," chr12~chr12 38797482 106453554 2 ++ 0.693147 2 1 1 2 2 TCGA-3B-A9HO-01A-11R-A38C-07 Nchr12~50308614~Nchr12~58284096 intergenic "-," "-," chr12~chr12 50308614 58284096 2 ++ 0.693147 2 0 2 2 14 TCGA-3B-A9HO-01A-11R-A38C-07 Nchr12~50315762~Nchr12~58284096 intergenic "-," "-," chr12~chr12 50315762 58284096 4 ++ 1.039721 4 1 3 4 16 TCGA-3B-A9HO-01A-11R-A38C-07 Nchr12~54605487~LTA4H intergenic "-," "LTA4H," chr12~chr12 54605487 96400187 9 +- 1.889159 8 5 3 8 20 TCGA-3B-A9HO-01A-11R-A38C-07 Nchr12~73275804~POLR3B intergenic "-," "POLR3B," chr12~chr12 73275804 106799635 4 ++ 1.386294 1 0 1 1 6 TCGA-3B-A9HO-01A-11R-A38C-07 Nchr12~73286270~Nchr12~89326447 intergenic "-," "-," chr12~chr12 73286270 89326447 153 -+ 3.094907 69 68 1 69 38 TCGA-3B-A9HO-01A-11R-A38C-07 Nchr12~82362545~Nchr12~83959023 intergenic "-," "-," chr12~chr12 82362545 83959023 3 +- 1.098612 3 1 2 3 8 TCGA-3B-A9HO-01A-11R-A38C-07 Nchr12~85176714~UTP20 intergenic "-," "UTP20," chr12~chr12 85176714 101777084 13 +- 1.697734 3 1 2 3 6 TCGA-3B-A9HO-01A-11R-A38C-07 Nchr12~89309714~Nchr21~31378284 intergenic "-," "-," chr12~chr21 89309714 31378284 63 +- 2.67606 33 16 17 33 200 TCGA-3B-A9HO-01A-11R-A38C-07 Nchr12~89338462~Nchr21~31378284 intergenic "-," "-," chr12~chr21 89338462 31378284 5 +- 1.332179 5 3 2 5 216 TCGA-3B-A9HO-01A-11R-A38C-07 Nchr12~90111140~FBXW8 intergenic "-," "FBXW8," chr12~chr12 90111140 117383169 7 ++ 1.549826 7 4 3 7 6 TCGA-3B-A9HO-01A-11R-A38C-07 Nchr12~91710235~RP11-96H19.1 intergenic "-," "RP11-96H19.1," chr12~chr12 91710235 46824219 2 +- 0.693147 2 2 0 2 2 TCGA-3B-A9HO-01A-11R-A38C-07 Nchr12~94519825~RBM19 intergenic "-," "RBM19," chr12~chr12 94519825 114261126 18 +- 2.399204 16 2 14 16 56 TCGA-3B-A9HO-01A-11R-A38C-07 Nchr15~45025437~Nchr15~45025612 intergenic "-," "-," chr15~chr15 45025437 45025612 5 -- 1.332179 3 0 3 3 2 TCGA-3B-A9HO-01A-11R-A38C-07 Nchr19~52646451~RPL37 intergenic "-," "RPL37," chr19~chr5 52646451 40834585 3 +- 1.098612 1 1 0 1 58 TCGA-3B-A9HO-01A-11R-A38C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 11 -+ 2.271869 11 4 7 11 118 TCGA-3B-A9HO-01A-11R-A38C-07 Nchr20~22697492~ERG intergenic "-," "ERG," chr20~chr21 22697492 39936053 4 -+ 0.693147 4 2 2 4 2 TCGA-3B-A9HO-01A-11R-A38C-07 Nchr20~24142769~Nchr5~1179271 intergenic "-," "-," chr20~chr5 24142769 1179271 10 ++ 2.025326 10 7 3 10 6 TCGA-3B-A9HO-01A-11R-A38C-07 Nchr21~46453575~MCM3AP intergenic "-," "MCM3AP," chr21~chr21 46453575 47655340 7 +- 1.475076 7 2 5 7 16 TCGA-3B-A9HO-01A-11R-A38C-07 Nchr4~138228524~RP11-138I17.1 intergenic "-," "RP11-138I17.1," chr4~chr4 138228524 138010754 14 -- 2.106577 9 4 5 9 32 TCGA-3B-A9HO-01A-11R-A38C-07 Nchr8~97402301~METTL1 intergenic "-," "METTL1,RP11-571M6.13," chr8~chr12 97402301 58162699 69 -+ 3.130611 68 13 55 68 200 TCGA-3B-A9HO-01A-11R-A38C-07 NchrX~56758632~NLGN4X intergenic "-," "NLGN4X," chrX~chrX 56758632 6127442 6 ++ 1.329661 6 6 0 6 12 TCGA-3B-A9HO-01A-11R-A38C-07 PDGFB~Nchr12~58284096 intergenic "PDGFB," "-," chr22~chr12 39626089 58284096 14 -+ 2.441015 14 6 8 14 26 TCGA-3B-A9HO-01A-11R-A38C-07 PDXK~LIN7A fusion "PDXK," "LIN7A," chr21~chr12 45163688 81283148 11 +- 2.271869 11 8 3 11 16 TCGA-3B-A9HO-01A-11R-A38C-07 PDXK~SDHA fusion "PDXK," "SDHA," chr21~chr5 45163688 235354 3 ++ 0.636514 3 1 2 3 2 TCGA-3B-A9HO-01A-11R-A38C-07 PHF21B~NOL12 fusion "PHF21B," "NOL12,TRIOBP," chr22~chr22 45343556 38147779 4 -+ 1.039721 4 2 2 4 4 TCGA-3B-A9HO-01A-11R-A38C-07 PLXNC1~Nchr19~42095147 intergenic "PLXNC1," "-," chr12~chr19 94575356 42095147 5 +- 1.332179 5 0 5 5 4 TCGA-3B-A9HO-01A-11R-A38C-07 POLR3B~Nchr12~126317858 intergenic "POLR3B," "-," chr12~chr12 106804738 126317858 4 +- 0.693147 4 2 2 4 10 TCGA-3B-A9HO-01A-11R-A38C-07 POLR3B~Nchr12~126343954 intergenic "POLR3B," "-," chr12~chr12 106804738 126343954 20 +- 2.415052 20 9 11 20 8 TCGA-3B-A9HO-01A-11R-A38C-07 POLR3B~Nchr12~126346011 intergenic "POLR3B," "-," chr12~chr12 106804738 126346011 12 +- 1.907284 11 5 6 11 10 TCGA-3B-A9HO-01A-11R-A38C-07 POLR3B~Nchr12~69176061 intergenic "POLR3B," "-," chr12~chr12 106804738 69176061 7 ++ 1.747868 6 2 4 6 20 TCGA-3B-A9HO-01A-11R-A38C-07 POLR3B~Nchr12~85176653 intergenic "POLR3B," "-," chr12~chr12 106857398 85176653 25 ++ 2.134255 13 1 12 13 12 TCGA-3B-A9HO-01A-11R-A38C-07 POLR3B~SLC35E3 fusion "POLR3B," "AC124890.1,SLC35E3," chr12~chr12 106804738 69187068 3 ++ 1.098612 3 2 1 3 8 TCGA-3B-A9HO-01A-11R-A38C-07 PPP1R12A~DNAH10 fusion "PPP1R12A," "DNAH10," chr12~chr12 80328475 124303497 8 -+ 1.906155 7 1 6 7 12 TCGA-3B-A9HO-01A-11R-A38C-07 PSMC4~FRS2 fusion "PSMC4," "FRS2," chr19~chr12 40486624 69879982 198 ++ 2.58536 191 73 118 191 548 TCGA-3B-A9HO-01A-11R-A38C-07 PTDSS1~Nchr12~69817781 intergenic "PTDSS1," "-," chr8~chr12 97285618 69817781 26 ++ 2.291299 26 15 11 26 82 TCGA-3B-A9HO-01A-11R-A38C-07 PTDSS1~RP11-600K15.1 fusion "PTDSS1," "RP11-600K15.1," chr8~chr8 97332573 69866348 4 +- 0.562335 4 1 3 4 2 TCGA-3B-A9HO-01A-11R-A38C-07 RBX1~Nchr22~39376677 intergenic "RBX1," "-," chr22~chr22 41347480 39376677 6 ++ 0.867563 6 6 0 6 216 TCGA-3B-A9HO-01A-11R-A38C-07 RILPL1~Nchr12~125249866 intergenic "RILPL1," "-," chr12~chr12 123968727 125249866 49 -- 2.44182 43 3 40 43 50 TCGA-3B-A9HO-01A-11R-A38C-07 RILPL1~Nchr12~125252165 intergenic "RILPL1," "-," chr12~chr12 123968727 125252165 4 -- 1.386294 4 1 3 4 42 TCGA-3B-A9HO-01A-11R-A38C-07 RILPL1~TSPAN31 fusion "RILPL1," "TSPAN31,CDK4," chr12~chr12 123968727 58143287 2 -- 0.693147 2 2 0 2 6 TCGA-3B-A9HO-01A-11R-A38C-07 ROPN1L~Nchr12~58284096 intergenic "ROPN1L," "-," chr5~chr12 10450225 58284096 22 ++ 2.523922 20 9 11 20 32 TCGA-3B-A9HO-01A-11R-A38C-07 RP11-357C3.3~SDC2 fusion "RP11-357C3.3," "SDC2," chrX~chr8 62780712 97605708 9 -+ 1.676988 9 2 7 9 16 TCGA-3B-A9HO-01A-11R-A38C-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 5 ++ 1.609438 5 4 1 5 6 TCGA-3B-A9HO-01A-11R-A38C-07 RPS9~Nchr19~50223193 intergenic "RPS9," "-," chr19~chr19 54705392 50223193 3 ++ 0.636514 3 0 3 3 134 TCGA-3B-A9HO-01A-11R-A38C-07 SCYL2~Nchr5~2610606 intergenic "SCYL2," "-," chr12~chr5 100691953 2610606 10 ++ 2.025326 10 1 9 10 20 TCGA-3B-A9HO-01A-11R-A38C-07 SDC2~LIN7A fusion "SDC2," "LIN7A," chr8~chr12 97506271 81283148 4 +- 1.386294 3 1 2 3 4 TCGA-3B-A9HO-01A-11R-A38C-07 SDC2~LIN7A fusion "SDC2," "LIN7A," chr8~chr12 97506559 81283148 6 +- 1.329661 3 0 3 3 14 TCGA-3B-A9HO-01A-11R-A38C-07 SDC2~Nchr8~97236608 intergenic "SDC2," "-," chr8~chr8 97614756 97236608 26 ++ 2.537769 26 13 13 26 52 TCGA-3B-A9HO-01A-11R-A38C-07 SDC2~TMEM132D fusion "SDC2," "TMEM132D," chr8~chr12 97506559 129569247 4 +- 1.039721 4 1 3 4 10 TCGA-3B-A9HO-01A-11R-A38C-07 SEMA5A~DAP fusion "SEMA5A," "DAP," chr5~chr5 9054199 10683683 3 -- 1.098612 3 1 2 3 8 TCGA-3B-A9HO-01A-11R-A38C-07 SGSM1~C21orf67 fusion "SGSM1," "C21orf67," chr22~chr21 25202451 46355805 6 +- 1.329661 4 3 1 4 6 TCGA-3B-A9HO-01A-11R-A38C-07 SGSM1~GAL3ST1 fusion "SGSM1," "GAL3ST1," chr22~chr22 25255807 30953388 6 +- 1.011404 6 5 1 6 4 TCGA-3B-A9HO-01A-11R-A38C-07 SLC41A2~LIN7A fusion "SLC41A2," "LIN7A," chr12~chr12 105351866 81242101 36 -- 2.894715 33 21 12 33 176 TCGA-3B-A9HO-01A-11R-A38C-07 SLC41A2~LIN7A fusion "SLC41A2," "LIN7A," chr12~chr12 105351968 81242101 8 -- 1.559581 8 8 0 8 100 TCGA-3B-A9HO-01A-11R-A38C-07 SNRNP35~Nchr12~133186922 intergenic "SNRNP35," "-," chr12~chr12 123942763 133186922 4 ++ 1.386294 4 0 4 4 6 TCGA-3B-A9HO-01A-11R-A38C-07 SNRPD3~SGSM1 fusion "SNRPD3,C22orf13," "SGSM1," chr22~chr22 24951583 25202408 19 -+ 2.37862 19 11 8 19 28 TCGA-3B-A9HO-01A-11R-A38C-07 SRGAP1~Nchr12~69585235 intergenic "SRGAP1," "-," chr12~chr12 64238663 69585235 2 ++ 0.693147 2 1 1 2 6 TCGA-3B-A9HO-01A-11R-A38C-07 TMEM132D~Nchr12~125202551 intergenic "TMEM132D," "-," chr12~chr12 129569042 125202551 5 -+ 1.609438 4 3 1 4 40 TCGA-3B-A9HO-01A-11R-A38C-07 TMEM5~Nchr12~67991390 intergenic "TMEM5," "-," chr12~chr12 64178852 67991390 8 ++ 1.494175 6 3 3 6 16 TCGA-3B-A9HO-01A-11R-A38C-07 TMEM5~PTDSS1 fusion "TMEM5," "PTDSS1," chr12~chr8 64178852 97285527 4 ++ 0.562335 4 0 4 4 20 TCGA-3B-A9HO-01A-11R-A38C-07 TMTC2~LIN7A fusion "TMTC2," "LIN7A," chr12~chr12 83150905 81283148 5 +- 1.332179 2 2 0 2 8 TCGA-3B-A9HO-01A-11R-A38C-07 TMTC3~RILPL1 fusion "TMTC3," "RILPL1," chr12~chr12 88554628 123970352 56 +- 2.868994 52 24 28 52 86 TCGA-3B-A9HO-01A-11R-A38C-07 TRAPPC10~AP001046.6 fusion "TRAPPC10," "AP001046.6," chr21~chr21 45483666 44785987 19 ++ 2.552085 19 7 12 19 68 TCGA-3B-A9HO-01A-11R-A38C-07 TSFM~C8orf34 fusion "TSFM," "C8orf34," chr12~chr8 58180945 69728121 3 ++ 1.098612 3 2 1 3 2 TCGA-3B-A9HO-01A-11R-A38C-07 TSFM~Nchr12~91650917 intergenic "TSFM," "-," chr12~chr12 58186856 91650917 3 +- 1.098612 3 1 2 3 18 TCGA-3B-A9HO-01A-11R-A38C-07 TSFM~Nchr12~91652336 intergenic "TSFM," "-," chr12~chr12 58180945 91652336 11 +- 1.666333 11 11 0 11 52 TCGA-3B-A9HO-01A-11R-A38C-07 TSFM~Nchr12~91652336 intergenic "TSFM," "-," chr12~chr12 58186856 91652336 83 +- 2.415476 78 73 5 78 102 TCGA-3B-A9HO-01A-11R-A38C-07 TTC28~EWSR1 fusion "TTC28," "EWSR1," chr22~chr22 29025540 29694723 19 -+ 2.333197 18 2 16 18 54 TCGA-3B-A9HO-01A-11R-A38C-07 UBAP2L~RP11-600K15.1 fusion "UBAP2L," "RP11-600K15.1," chr1~chr8 154209612 69836730 112 +- 2.897939 118 65 45 118 178 TCGA-3B-A9HO-01A-11R-A38C-07 ULK1~Nchr12~102390726 intergenic "ULK1," "-," chr12~chr12 132402099 102390726 3 ++ 1.098612 2 0 2 2 14 TCGA-3B-A9HO-01A-11R-A38C-07 ULK1~Nchr12~102391000 intergenic "ULK1," "-," chr12~chr12 132402099 102391000 6 ++ 0.867563 3 2 1 3 70 TCGA-3B-A9HO-01A-11R-A38C-07 ULK1~Nchr12~102398328 intergenic "ULK1," "-," chr12~chr12 132401607 102398328 4 ++ 1.039721 4 3 1 4 88 TCGA-3B-A9HO-01A-11R-A38C-07 ULK1~Nchr12~102398328 intergenic "ULK1," "-," chr12~chr12 132402099 102398328 55 ++ 2.708809 53 24 29 53 336 TCGA-3B-A9HO-01A-11R-A38C-07 ULK1~TCTN1 fusion "ULK1," "TCTN1," chr12~chr12 132399966 111066572 21 ++ 2.557508 17 6 11 17 28 TCGA-3B-A9HO-01A-11R-A38C-07 UNC119B~Nchr12~89309600 intergenic "UNC119B," "-," chr12~chr12 121154845 89309600 9 ++ 2.197225 8 6 2 8 18 TCGA-3B-A9HO-01A-11R-A38C-07 UTP20~TMEM132D fusion "UTP20," "TMEM132D," chr12~chr12 101696331 130224347 45 +- 2.51666 41 22 19 41 202 TCGA-3B-A9HO-01A-11R-A38C-07 XPNPEP3~Nchr22~39376677 intergenic "XPNPEP3,RBX1,XPNPEP3," "-," chr22~chr22 41349637 39376677 94 ++ 2.600363 89 18 71 89 496 TCGA-3B-A9HO-01A-11R-A38C-07 XPNPEP3~Nchr22~39377105 intergenic "XPNPEP3,RBX1,XPNPEP3," "-," chr22~chr22 41349637 39377105 20 ++ 2.224098 20 15 5 20 208 TCGA-3B-A9HO-01A-11R-A38C-07 XPNPEP3~Nchr22~39377105 intergenic "XPNPEP3," "-," chr22~chr22 41351450 39377105 3 ++ 1.098612 3 0 3 3 144 TCGA-3B-A9HO-01A-11R-A38C-07 YEATS4~Nchr12~94519640 intergenic "YEATS4," "-," chr12~chr12 69756687 94519640 38 ++ 2.437813 34 23 11 34 66 TCGA-3B-A9HO-01A-11R-A38C-07 YEATS4~Nchr8~97176766 intergenic "YEATS4," "-," chr12~chr8 69756687 97176766 53 +- 2.3111 53 36 17 53 76 TCGA-3B-A9HO-01A-11R-A38C-07 ZNF641~C12orf28 fusion "ZNF641," "AC025263.3,C12orf28," chr12~chr12 48741035 70249060 6 -+ 1.242453 5 5 0 5 8 TCGA-3B-A9HO-01A-11R-A38C-07 ZNF641~Nchr12~48645483 intergenic "ZNF641," "-," chr12~chr12 48738382 48645483 7 -+ 1.94591 7 1 6 7 6 TCGA-3B-A9HO-01A-11R-A38C-07 ZNF641~Nchr12~48645977 intergenic "ZNF641," "-," chr12~chr12 48738382 48645977 14 -+ 2.106577 13 7 6 13 40 TCGA-DX-AB2Z-01A-11R-A38C-07 AE000661.2~AE000661.28 fusion "AE000661.2," "AE000661.28,TRAC," chr14~chr14 22749082 23016447 7 ++ 1.747868 7 1 6 7 42 TCGA-DX-AB2Z-01A-11R-A38C-07 AP000695.6~C21orf89 fusion "AP000695.6," "C21orf89," chr21~chr21 37802710 46678366 10 ++ 2.163956 10 1 9 10 70 TCGA-DX-AB2Z-01A-11R-A38C-07 ATP8B1~Nchr8~57640138 intergenic "ATP8B1," "-," chr18~chr8 55359039 57640138 18 -- 2.399204 18 8 10 18 28 TCGA-DX-AB2Z-01A-11R-A38C-07 ATRN~Nchr7~9239903 intergenic "ATRN," "-," chr20~chr7 3581671 9239903 4 +- 1.386294 4 1 3 4 6 TCGA-DX-AB2Z-01A-11R-A38C-07 ATRX~NchrX~76205568 intergenic "ATRX," "-," chrX~chrX 76812922 76205568 2 -- 0.693147 2 1 1 2 2 TCGA-DX-AB2Z-01A-11R-A38C-07 C14orf135~Nchr4~44509387 intergenic "C14orf135," "-," chr14~chr4 60575495 44509387 9 -+ 1.14906 3 3 0 3 2 TCGA-DX-AB2Z-01A-11R-A38C-07 CD34~Nchr1~163704751 intergenic "CD34," "-," chr1~chr1 208064211 163704751 7 ++ 1.549826 6 3 3 6 12 TCGA-DX-AB2Z-01A-11R-A38C-07 CEP95~Nchr17~59740876 intergenic "CEP95," "-," chr17~chr17 62530855 59740876 4 ++ 1.386294 4 0 4 4 20 TCGA-DX-AB2Z-01A-11R-A38C-07 CMTM8~CMTM7 fusion "CMTM8," "CMTM7," chr3~chr3 32280611 32483332 3 ++ 1.098612 3 1 2 3 8 TCGA-DX-AB2Z-01A-11R-A38C-07 CTIF~JUB fusion "CTIF," "JUB," chr18~chr14 46065683 23447654 58 +- 2.936908 56 36 20 56 142 TCGA-DX-AB2Z-01A-11R-A38C-07 CTIF~JUB fusion "CTIF," "JUB," chr18~chr14 46081382 23447654 2 +- 0.693147 2 1 1 2 76 TCGA-DX-AB2Z-01A-11R-A38C-07 CTIF~JUB fusion "CTIF," "JUB," chr18~chr14 46079815 23447654 7 +- 1.747868 7 5 2 7 136 TCGA-DX-AB2Z-01A-11R-A38C-07 CTIF~JUB fusion "CTIF," "JUB," chr18~chr14 46066202 23447654 43 +- 2.614102 42 31 11 42 136 TCGA-DX-AB2Z-01A-11R-A38C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31237115 31322073 2 -- 0.693147 1 0 1 1 280 TCGA-DX-AB2Z-01A-11R-A38C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31237288 31323000 8 -- 1.073543 8 5 3 8 24 TCGA-DX-AB2Z-01A-11R-A38C-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32486403 32548633 2 -- 0.693147 1 1 0 1 102 TCGA-DX-AB2Z-01A-11R-A38C-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 2593 -- 2.643491 2247 797 245 2247 2 TCGA-DX-AB2Z-01A-11R-A38C-07 IGLV5-45~IGLL5 fusion "IGLV5-45," "IGLL5,IGLC1," chr22~chr22 22730714 23237555 2 ++ 0.693147 2 0 2 2 6 TCGA-DX-AB2Z-01A-11R-A38C-07 JAZF1~AC053545.3 fusion "AC005017.1,JAZF1," "AC053545.3," chr7~chr4 28220082 123541123 9 -+ 2.197225 9 4 5 9 14 TCGA-DX-AB2Z-01A-11R-A38C-07 JAZF1~Nchr4~123508248 intergenic "AC005017.1,JAZF1," "-," chr7~chr4 28220082 123508248 2 -+ 0.693147 2 1 1 2 18 TCGA-DX-AB2Z-01A-11R-A38C-07 KIF3B~SCFD2 fusion "KIF3B," "SCFD2," chr20~chr4 30898984 53787037 3 +- 0.636514 2 0 2 2 8 TCGA-DX-AB2Z-01A-11R-A38C-07 LHFP~Nchr17~49168319 intergenic "LHFP," "-," chr13~chr17 40001074 49168319 17 -- 2.196756 11 5 6 11 50 TCGA-DX-AB2Z-01A-11R-A38C-07 LPP~Nchr4~21546640 intergenic "LPP," "-," chr3~chr4 187943315 21546640 5 +- 1.609438 3 2 1 3 24 TCGA-DX-AB2Z-01A-11R-A38C-07 NTM~Nchr11~131639201 intergenic "NTM," "-," chr11~chr11 131240783 131639201 6 ++ 1.56071 6 1 5 6 10 TCGA-DX-AB2Z-01A-11R-A38C-07 Nchr11~47213095~RPS20 intergenic "-," "RPS20," chr11~chr8 47213095 56986946 2 ++ 0.693147 1 0 1 1 184 TCGA-DX-AB2Z-01A-11R-A38C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 278 -+ 2.704449 166 0 165 166 124 TCGA-DX-AB2Z-01A-11R-A38C-07 Nchr11~93922106~ARPC3 intergenic "-," "ARPC3," chr11~chr12 93922106 110888131 5 +- 1.05492 3 0 3 3 10 TCGA-DX-AB2Z-01A-11R-A38C-07 Nchr18~37115422~Nchr18~36788753 intergenic "-," "-," chr18~chr18 37115422 36788753 3 -- 1.098612 2 2 0 2 4 TCGA-DX-AB2Z-01A-11R-A38C-07 Nchr18~37331293~Nchr18~37115579 intergenic "-," "-," chr18~chr18 37331293 37115579 14 -- 1.908535 10 6 4 10 18 TCGA-DX-AB2Z-01A-11R-A38C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 48 -+ 2.936477 44 33 11 44 146 TCGA-DX-AB2Z-01A-11R-A38C-07 Nchr1~98520059~Nchr1~98736151 intergenic "-," "-," chr1~chr1 98520059 98736151 2 ++ 0.693147 2 1 1 2 4 TCGA-DX-AB2Z-01A-11R-A38C-07 Nchr1~98523354~Nchr1~98736151 intergenic "-," "-," chr1~chr1 98523354 98736151 4 ++ 1.386294 4 2 2 4 8 TCGA-DX-AB2Z-01A-11R-A38C-07 Nchr20~31640694~MYLK2 intergenic "-," "MYLK2," chr20~chr20 31640694 30418559 6 -- 1.56071 4 4 0 4 6 TCGA-DX-AB2Z-01A-11R-A38C-07 Nchr20~31640694~MYLK2 intergenic "-," "MYLK2," chr20~chr20 31640694 30422089 37 -- 3.011439 14 6 8 14 40 TCGA-DX-AB2Z-01A-11R-A38C-07 Nchr21~37803286~C21orf89 intergenic "-," "C21orf89," chr21~chr21 37803286 46678366 4 ++ 1.386294 4 2 2 4 78 TCGA-DX-AB2Z-01A-11R-A38C-07 Nchr3~187872040~LPP intergenic "-," "LPP," chr3~chr3 187872040 188123900 2 ++ 0.693147 2 0 2 2 2 TCGA-DX-AB2Z-01A-11R-A38C-07 Nchr6~29855766~HLA-C intergenic "-," "HLA-C," chr6~chr6 29855766 31239556 2 -- 0.693147 2 0 2 2 42 TCGA-DX-AB2Z-01A-11R-A38C-07 PHF20~Nchr20~31640800 intergenic "PHF20," "-," chr20~chr20 34515801 31640800 67 +- 2.901864 33 9 24 33 58 TCGA-DX-AB2Z-01A-11R-A38C-07 PHLDB1~ACTN1 fusion "PHLDB1," "ACTN1," chr11~chr14 118492253 69392389 103 +- 2.929965 99 10 89 99 168 TCGA-DX-AB2Z-01A-11R-A38C-07 PHLDB1~SPAG9 fusion "PHLDB1," "SPAG9," chr11~chr17 118478414 49133843 5 +- 1.609438 3 3 0 3 8 TCGA-DX-AB2Z-01A-11R-A38C-07 PLXNA2~Nchr1~219012719 intergenic "PLXNA2," "-," chr1~chr1 208383625 219012719 7 -- 1.747868 7 6 1 7 14 TCGA-DX-AB2Z-01A-11R-A38C-07 PLXNA2~RP1-35C21.2 fusion "PLXNA2," "RP1-35C21.2," chr1~chr1 208383625 177362924 6 -- 1.56071 6 5 1 6 10 TCGA-DX-AB2Z-01A-11R-A38C-07 POFUT2~Nchr21~46982871 intergenic "POFUT2," "-," chr21~chr21 46689754 46982871 7 -- 1.475076 7 1 6 7 10 TCGA-DX-AB2Z-01A-11R-A38C-07 POFUT2~Nchr21~46983582 intergenic "POFUT2," "-," chr21~chr21 46689754 46983582 18 -- 2.322188 17 7 10 17 40 TCGA-DX-AB2Z-01A-11R-A38C-07 RCAN1~Nchr21~37028445 intergenic "RCAN1," "-," chr21~chr21 35987059 37028445 6 -+ 1.56071 6 4 2 6 10 TCGA-DX-AB2Z-01A-11R-A38C-07 RP1-34H18.1~NAV3 fusion "RP1-34H18.1," "NAV3," chr12~chr12 77966046 78334099 2 ++ 0.693147 2 1 1 2 10 TCGA-DX-AB2Z-01A-11R-A38C-07 RP11-725K16.4~Nchr11~102919143 intergenic "RP11-725K16.4," "-," chr11~chr11 102703637 102919143 6 ++ 1.56071 6 3 3 6 10 TCGA-DX-AB2Z-01A-11R-A38C-07 RPAIN~Nchr9~141088587 intergenic "RPAIN," "-," chr17~chr9 5326149 141088587 2 +- 0.693147 2 2 0 2 8 TCGA-DX-AB2Z-01A-11R-A38C-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 4 +- 0.562335 4 0 4 4 4 TCGA-DX-AB2Z-01A-11R-A38C-07 RPS12~Nchr6~151547124 intergenic "RPS12," "-," chr6~chr6 133135706 151547124 2 -- 0.693147 1 0 1 1 52 TCGA-DX-AB2Z-01A-11R-A38C-07 SENP5~FAM193A fusion "SENP5," "FAM193A," chr3~chr4 196657771 2673848 3 ++ 1.098612 3 0 3 3 4 TCGA-DX-AB2Z-01A-11R-A38C-07 SENP5~FAM193A fusion "SENP5," "FAM193A," chr3~chr4 196657839 2673848 2 ++ 0.693147 2 2 0 2 8 TCGA-DX-AB2Z-01A-11R-A38C-07 SMYD3~Nchr1~232710130 intergenic "SMYD3," "-," chr1~chr1 246580598 232710130 8 -+ 1.732868 8 3 5 8 24 TCGA-DX-AB2Z-01A-11R-A38C-07 SPAG9~Nchr20~17178799 intergenic "SPAG9," "-," chr17~chr20 49133773 17178799 11 -- 2.271869 5 0 5 5 2 TCGA-DX-AB2Z-01A-11R-A38C-07 ST6GALNAC5~Nchr1~5798509 intergenic "ST6GALNAC5," "-," chr1~chr1 77334520 5798509 2 ++ 0.693147 2 1 1 2 6 TCGA-DX-AB2Z-01A-11R-A38C-07 ST6GALNAC5~Nchr1~5805660 intergenic "ST6GALNAC5," "-," chr1~chr1 77334427 5805660 15 ++ 1.707539 15 15 0 15 22 TCGA-DX-AB2Z-01A-11R-A38C-07 TMEM106A~Nchr17~41400158 intergenic "TMEM106A," "-," chr17~chr17 41369331 41400158 4 +- 1.386294 4 1 3 4 6 TCGA-DX-AB2Z-01A-11R-A38C-07 USP47~GALNTL4 fusion "USP47," "GALNTL4," chr11~chr11 11863771 11314740 43 +- 2.896354 43 19 24 43 66 TCGA-DX-AB2Z-01A-11R-A38C-07 ZFHX4~Nchr8~77919044 intergenic "ZFHX4," "-," chr8~chr8 77620283 77919044 3 ++ 0.636514 3 0 3 3 6 TCGA-DX-AB2X-01A-11R-A38C-07 AC008038.1~Nchr7~132720502 intergenic "AC008038.1," "-," chr7~chr7 132720399 132720502 2 -- 0.693147 2 0 2 2 2 TCGA-DX-AB2X-01A-11R-A38C-07 ATP8B2~Nchr1~160501164 intergenic "ATP8B2," "-," chr1~chr1 154310020 160501164 2 ++ 0.693147 2 2 0 2 116 TCGA-DX-AB2X-01A-11R-A38C-07 C17orf63~ALDOC fusion "C17orf63," "ALDOC," chr17~chr17 27169700 26902562 49 -- 3.01455 49 45 4 49 114 TCGA-DX-AB2X-01A-11R-A38C-07 C17orf63~ALDOC fusion "C17orf63," "ALDOC," chr17~chr17 27169700 26903038 3 -- 1.098612 3 3 0 3 112 TCGA-DX-AB2X-01A-11R-A38C-07 EIF1~Nchr17~21163258 intergenic "EIF1," "-," chr17~chr17 39847063 21163258 2 ++ 0.693147 2 0 2 2 2 TCGA-DX-AB2X-01A-11R-A38C-07 EPHB2~Nchr3~80055461 intergenic "EPHB2," "-," chr1~chr3 23107978 80055461 35 ++ 2.726061 32 3 29 32 50 TCGA-DX-AB2X-01A-11R-A38C-07 HLA-DPB2~HLA-DPB1 fusion "HLA-DPB2," "HLA-DPB1," chr6~chr6 33095875 33053556 6 ++ 1.56071 5 3 2 5 2 TCGA-DX-AB2X-01A-11R-A38C-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 257 -- 2.651968 142 59 83 142 2 TCGA-DX-AB2X-01A-11R-A38C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 58 -+ 2.481892 33 0 33 33 36 TCGA-DX-AB2X-01A-11R-A38C-07 Nchr12~130484442~TMEM132D intergenic "-," "TMEM132D," chr12~chr12 130484442 129809694 13 ++ 1.925121 13 8 5 13 18 TCGA-DX-AB2X-01A-11R-A38C-07 Nchr14~58283422~SLC35F4 intergenic "-," "SLC35F4," chr14~chr14 58283422 58060842 6 -- 1.56071 6 3 3 6 6 TCGA-DX-AB2X-01A-11R-A38C-07 Nchr17~16343551~Nchr17~16344712 intergenic "-," "-," chr17~chr17 16343551 16344712 3 -+ 1.098612 2 2 0 2 6 TCGA-DX-AB2X-01A-11R-A38C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 120 -+ 3.033396 113 70 41 113 274 TCGA-DX-AB2X-01A-11R-A38C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145013721 12 -+ 1.583258 12 3 9 12 62 TCGA-DX-AB2X-01A-11R-A38C-07 Nchr1~171639784~Nchr1~171639676 intergenic "-," "-," chr1~chr1 171639784 171639676 2 ++ 0.693147 2 1 1 2 2 TCGA-DX-AB2X-01A-11R-A38C-07 Nchr2~177065909~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065909 177065788 2 ++ 0.693147 2 0 2 2 2 TCGA-DX-AB2X-01A-11R-A38C-07 Nchr2~177065915~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065915 177065788 3 ++ 1.098612 3 0 3 3 2 TCGA-DX-AB2X-01A-11R-A38C-07 Nchr3~157171037~RP11-6F2.6 intergenic "-," "RP11-6F2.6," chr3~chr3 157171037 156817272 3 ++ 1.098612 2 0 2 2 30 TCGA-DX-AB2X-01A-11R-A38C-07 Nchr3~157171135~RP11-6F2.6 intergenic "-," "RP11-6F2.6," chr3~chr3 157171135 156817272 3 ++ 1.098612 2 1 1 2 34 TCGA-DX-AB2X-01A-11R-A38C-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 7 ++ 1.747868 6 6 0 6 4 TCGA-DX-AB2X-01A-11R-A38C-07 Nchr6~57575705~Nchr5~21565639 intergenic "-," "-," chr6~chr5 57575705 21565639 2 +- 0.693147 1 0 1 1 10 TCGA-DX-AB2X-01A-11R-A38C-07 Nchr9~19200845~RPS6 intergenic "-," "RPS6," chr9~chr9 19200845 19379586 2 -- 0.693147 2 0 2 2 30 TCGA-DX-AB2X-01A-11R-A38C-07 Nchr9~33624872~Nchr9~33624988 intergenic "-," "-," chr9~chr9 33624872 33624988 2 -- 0.693147 2 2 0 2 4 TCGA-DX-AB2X-01A-11R-A38C-07 RP1-34H18.1~RP11-781A6.1 fusion "RP1-34H18.1," "RP11-781A6.1," chr12~chr12 77966046 78177043 14 ++ 1.970181 13 7 6 13 24 TCGA-DX-AB2X-01A-11R-A38C-07 RP11-6F2.6~Nchr3~157171058 intergenic "RP11-6F2.6," "-," chr3~chr3 156817272 157171058 2 -- 0.693147 2 0 2 2 34 TCGA-DX-AB2X-01A-11R-A38C-07 RPL22~PRDM16 fusion "RPL22," "PRDM16," chr1~chr1 6257712 3342145 302 -+ 3.131641 284 139 141 284 626 TCGA-DX-AB2X-01A-11R-A38C-07 TRIO~DAP fusion "TRIO," "DAP," chr5~chr5 14420130 10683683 7 +- 1.94591 7 4 3 7 82 TCGA-DX-AB2X-01A-11R-A38C-07 TRIO~DAP fusion "TRIO," "DAP," chr5~chr5 14420130 10748383 162 +- 3.186616 117 40 77 117 282 TCGA-DX-AB2X-01A-11R-A38C-07 TRIO~DAP fusion "TRIO," "DAP," chr5~chr5 14441469 10748383 44 +- 2.839396 33 12 21 33 46 TCGA-DX-AB2T-01A-11R-A38C-07 AC011497.1~Nchr19~43155239 intergenic "AC011497.1," "-," chr19~chr19 42929356 43155239 6 ++ 1.56071 6 4 2 6 16 TCGA-DX-AB2T-01A-11R-A38C-07 ADAMTS5~Nchr21~28543481 intergenic "ADAMTS5," "-," chr21~chr21 28338443 28543481 4 ++ 1.386294 3 3 0 3 4 TCGA-DX-AB2T-01A-11R-A38C-07 AKIRIN2~FAM59A fusion "AKIRIN2-AS1,AKIRIN2," "FAM59A," chr6~chr18 88411168 29850346 3 -- 1.098612 3 3 0 3 8 TCGA-DX-AB2T-01A-11R-A38C-07 BCAT1~Nchr12~7138067 intergenic "BCAT1," "-," chr12~chr12 25031464 7138067 2 -+ 0.693147 1 0 1 1 8 TCGA-DX-AB2T-01A-11R-A38C-07 C18orf25~GABRR2 fusion "C18orf25," "GABRR2," chr18~chr6 43754296 90009584 3 +- 1.098612 3 1 2 3 4 TCGA-DX-AB2T-01A-11R-A38C-07 CCNC~MICAL1 fusion "CCNC," "MICAL1," chr6~chr6 100016372 109767975 3 -- 1.098612 2 0 2 2 6 TCGA-DX-AB2T-01A-11R-A38C-07 CNTLN~RAB12 fusion "CNTLN," "RAB12," chr9~chr18 17143374 8624936 3 ++ 1.098612 3 2 1 3 2 TCGA-DX-AB2T-01A-11R-A38C-07 CTIF~Nchr18~37663755 intergenic "CTIF," "-," chr18~chr18 46066202 37663755 2 +- 0.693147 2 2 0 2 8 TCGA-DX-AB2T-01A-11R-A38C-07 FARP1~Nchr13~98582620 intergenic "FARP1," "-," chr13~chr13 98795746 98582620 5 +- 1.609438 2 2 0 2 6 TCGA-DX-AB2T-01A-11R-A38C-07 GPC6~RNF113B fusion "GPC6," "RNF113B," chr13~chr13 94197674 98828914 3 +- 1.098612 2 2 0 2 10 TCGA-DX-AB2T-01A-11R-A38C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 839 -- 2.435133 839 839 0 839 344 TCGA-DX-AB2T-01A-11R-A38C-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32487941 32548633 72 -- 2.432683 12 3 9 12 2 TCGA-DX-AB2T-01A-11R-A38C-07 HSPB1~Nchr9~74622964 intergenic "HSPB1," "-," chr7~chr9 75932351 74622964 2 -+ 0.693147 1 1 0 1 18 TCGA-DX-AB2T-01A-11R-A38C-07 LSAMP~Nchr3~116018482 intergenic "LSAMP," "-," chr3~chr3 115726132 116018482 2 ++ 0.693147 2 1 1 2 12 TCGA-DX-AB2T-01A-11R-A38C-07 LSAMP~Nchr3~116018482 intergenic "LSAMP," "-," chr3~chr3 115786880 116018482 2 ++ 0.693147 2 0 2 2 4 TCGA-DX-AB2T-01A-11R-A38C-07 MOCOS~Nchr6~78632806 intergenic "MOCOS," "-," chr18~chr6 33785239 78632806 2 ++ 0.693147 2 2 0 2 6 TCGA-DX-AB2T-01A-11R-A38C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 59 -+ 2.580127 30 0 30 30 48 TCGA-DX-AB2T-01A-11R-A38C-07 Nchr13~98582495~ME1 intergenic "-," "ME1," chr13~chr6 98582495 84025132 19 -- 2.40616 7 2 5 7 38 TCGA-DX-AB2T-01A-11R-A38C-07 Nchr14~90085372~FOXN3 intergenic "-," "FOXN3," chr14~chr14 90085372 89878834 2 -- 0.693147 2 2 0 2 12 TCGA-DX-AB2T-01A-11R-A38C-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 3 ++ 1.098612 3 1 2 3 6 TCGA-DX-AB2T-01A-11R-A38C-07 Nchr18~37115422~Nchr18~36788753 intergenic "-," "-," chr18~chr18 37115422 36788753 4 -- 1.386294 4 2 2 4 4 TCGA-DX-AB2T-01A-11R-A38C-07 Nchr18~37331293~Nchr18~37115579 intergenic "-," "-," chr18~chr18 37331293 37115579 4 -- 1.039721 4 2 2 4 10 TCGA-DX-AB2T-01A-11R-A38C-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 8 -- 1.732868 5 2 3 5 6 TCGA-DX-AB2T-01A-11R-A38C-07 Nchr18~8558437~OSBPL1A intergenic "-," "OSBPL1A," chr18~chr18 8558437 21828411 3 -+ 1.098612 1 0 1 1 12 TCGA-DX-AB2T-01A-11R-A38C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 31 -+ 2.570254 31 24 7 31 120 TCGA-DX-AB2T-01A-11R-A38C-07 Nchr2~147708340~Nchr2~147348579 intergenic "-," "-," chr2~chr2 147708340 147348579 2 -- 0.693147 1 0 1 1 6 TCGA-DX-AB2T-01A-11R-A38C-07 Nchr3~115510005~LSAMP intergenic "-," "LSAMP," chr3~chr3 115510005 115725983 11 ++ 2.098274 9 2 7 9 14 TCGA-DX-AB2T-01A-11R-A38C-07 Nchr3~115510005~LSAMP intergenic "-," "LSAMP," chr3~chr3 115510005 115786776 3 ++ 1.098612 3 0 3 3 4 TCGA-DX-AB2T-01A-11R-A38C-07 Nchr6~97757935~MTO1 intergenic "-," "RP11-505P4.6,MTO1," chr6~chr6 97757935 74201957 3 ++ 1.098612 3 2 1 3 10 TCGA-DX-AB2T-01A-11R-A38C-07 PHF21A~Nchr11~48533856 intergenic "PHF21A," "-," chr11~chr11 46098305 48533856 3 -- 1.098612 3 2 1 3 2 TCGA-DX-AB2T-01A-11R-A38C-07 PPIL6~Nchr6~103765277 intergenic "PPIL6," "-," chr6~chr6 109740390 103765277 2 -- 0.693147 2 0 2 2 2 TCGA-DX-AB2T-01A-11R-A38C-07 RNGTT~Nchr13~106357721 intergenic "RNGTT," "-," chr6~chr13 89650790 106357721 3 -- 0.636514 2 1 1 2 2 TCGA-DX-AB2T-01A-11R-A38C-07 RP11-608O21.1~Nchr4~19939063 intergenic "RP11-608O21.1," "-," chr4~chr4 19535241 19939063 2 ++ 0.693147 2 0 2 2 6 TCGA-DX-AB2T-01A-11R-A38C-07 SFRS18~Nchr13~110152130 intergenic "SFRS18," "-," chr6~chr13 99850416 110152130 2 -+ 0.693147 2 0 2 2 14 TCGA-DX-AB2T-01A-11R-A38C-07 SFRS18~Nchr13~110152165 intergenic "SFRS18," "-," chr6~chr13 99850416 110152165 5 -+ 1.609438 4 1 3 4 12 TCGA-DX-AB2T-01A-11R-A38C-07 SFRS18~Nchr13~110152169 intergenic "SFRS18," "-," chr6~chr13 99850416 110152169 2 -+ 0.693147 2 2 0 2 10 TCGA-DX-AB2T-01A-11R-A38C-07 SMAD7~Nchr18~55308791 intergenic "SMAD7," "-," chr18~chr18 46468851 55308791 3 -+ 1.098612 3 1 2 3 6 TCGA-DX-AB2T-01A-11R-A38C-07 TANC1~Nchr2~147708462 intergenic "TANC1," "-," chr2~chr2 159857701 147708462 5 +- 1.332179 4 2 2 4 18 TCGA-DX-AB2T-01A-11R-A38C-07 TANC1~Nchr2~147845686 intergenic "TANC1," "-," chr2~chr2 159857701 147845686 4 +- 1.039721 4 3 1 4 2 TCGA-DX-AB2T-01A-11R-A38C-07 TIMP2~AC107218.3 fusion "TIMP2," "AC107218.3," chr17~chr2 76921041 215301041 4 -- 1.386294 2 1 1 2 6 TCGA-DX-AB2T-01A-11R-A38C-07 TMEM97~Nchr17~26536501 intergenic "TMEM97," "-," chr17~chr17 26646391 26536501 3 +- 0.636514 3 1 2 3 12 TCGA-DX-AB2T-01A-11R-A38C-07 TP53~HIGD1B fusion "WRAP53,TP53," "HIGD1B," chr17~chr17 7590695 42925428 40 -+ 2.789966 40 19 21 40 276 TCGA-DX-AB2T-01A-11R-A38C-07 TP53~HIGD1B fusion "WRAP53,TP53," "HIGD1B," chr17~chr17 7590695 42925470 44 -+ 2.785019 44 21 23 44 204 TCGA-DX-AB2T-01A-11R-A38C-07 UHRF2~Nchr18~5833255 intergenic "UHRF2," "-," chr9~chr18 6413643 5833255 3 +- 0.636514 3 3 0 3 20 TCGA-DX-AB2T-01A-11R-A38C-07 ZC3H12A~Nchr1~37950164 intergenic "ZC3H12A," "-," chr1~chr1 37947063 37950164 4 +- 1.386294 4 2 2 4 8 TCGA-DX-AB2T-01A-11R-A38C-07 ZDHHC14~PTPRK fusion "ZDHHC14," "PTPRK," chr6~chr6 157803298 128718833 2 +- 0.693147 2 0 2 2 2 TCGA-DX-AB2T-01A-11R-A38C-07 ZNF521~Nchr9~38646314 intergenic "ZNF521," "-," chr18~chr9 22669429 38646314 9 -- 2.043192 9 6 3 9 16 TCGA-X9-A973-01A-11R-A38C-07 AC104654.2~Nchr2~41646181 intergenic "AC104654.2," "-," chr2~chr2 42160416 41646181 8 -- 1.732868 6 2 4 6 16 TCGA-X9-A973-01A-11R-A38C-07 BBS9~Nchr7~33916664 intergenic "BBS9," "-," chr7~chr7 33573788 33916664 2 ++ 0.693147 2 0 2 2 2 TCGA-X9-A973-01A-11R-A38C-07 BEST1~Nchr11~77445551 intergenic "BEST1,FTH1," "-," chr11~chr11 61732197 77445551 2 -- 0.693147 2 2 0 2 10 TCGA-X9-A973-01A-11R-A38C-07 DAZAP2~Nchr2~203066607 intergenic "DAZAP2," "-," chr12~chr2 51632613 203066607 2 -- 0.693147 2 2 0 2 2 TCGA-X9-A973-01A-11R-A38C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 48 -- 2.12697 48 48 0 48 14 TCGA-X9-A973-01A-11R-A38C-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 9 -- 1.14906 8 0 8 8 20 TCGA-X9-A973-01A-11R-A38C-07 HLA-L~Nchr6~29864828 intergenic "HLA-L," "-," chr6~chr6 30229256 29864828 458 ++ 2.261937 45 45 0 45 6 TCGA-X9-A973-01A-11R-A38C-07 MYH8~Nchr17~10511671 intergenic "MYH8," "-," chr17~chr17 10309555 10511671 2 ++ 0.693147 1 0 1 1 4 TCGA-X9-A973-01A-11R-A38C-07 NAP1L1~Nchr3~120525220 intergenic "NAP1L1," "-," chr12~chr3 76447099 120525220 2 +- 0.693147 1 0 1 1 4 TCGA-X9-A973-01A-11R-A38C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 56 -+ 2.358098 24 0 24 24 28 TCGA-X9-A973-01A-11R-A38C-07 Nchr12~113828718~Nchr12~113828873 intergenic "-," "-," chr12~chr12 113828718 113828873 2 -- 0.693147 2 0 2 2 2 TCGA-X9-A973-01A-11R-A38C-07 Nchr13~77303480~Nchr13~77011004 intergenic "-," "-," chr13~chr13 77303480 77011004 3 -- 1.098612 2 2 0 2 14 TCGA-X9-A973-01A-11R-A38C-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 2 ++ 0.693147 2 0 2 2 6 TCGA-X9-A973-01A-11R-A38C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 22 -+ 2.570281 22 11 10 22 168 TCGA-X9-A973-01A-11R-A38C-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 4 ++ 1.386294 2 2 0 2 28 TCGA-X9-A973-01A-11R-A38C-07 Nchr5~134970646~SLC25A48 intergenic "-," "SLC25A48," chr5~chr5 134970646 135178105 2 ++ 0.693147 2 0 2 2 6 TCGA-X9-A973-01A-11R-A38C-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 3 -- 1.098612 2 2 0 2 4 TCGA-X9-A973-01A-11R-A38C-07 Nchr7~122851497~Nchr7~123096679 intergenic "-," "-," chr7~chr7 122851497 123096679 3 ++ 1.098612 2 0 2 2 2 TCGA-X9-A971-01A-11R-A38C-07 ALCAM~Nchr3~168017352 intergenic "ALCAM," "-," chr3~chr3 105086325 168017352 2 +- 0.693147 2 0 2 2 2 TCGA-X9-A971-01A-11R-A38C-07 ALPK3~Nchr14~57418095 intergenic "ALPK3," "-," chr15~chr14 85360826 57418095 2 ++ 0.693147 2 2 0 2 10 TCGA-X9-A971-01A-11R-A38C-07 C14orf45~Nchr14~70735932 intergenic "C14orf45," "-," chr14~chr14 74500874 70735932 4 +- 1.386294 4 3 1 4 2 TCGA-X9-A971-01A-11R-A38C-07 C15orf57~CBX3 fusion "C15orf57," "CBX3," chr15~chr7 40854971 26241389 3 -+ 0.636514 3 2 1 3 6 TCGA-X9-A971-01A-11R-A38C-07 CBFA2T2~SNTA1 fusion "CBFA2T2," "SNTA1," chr20~chr20 32078107 32026832 8 +- 1.559581 8 8 0 8 10 TCGA-X9-A971-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94052430 48270175 9 +- 1.522955 7 1 6 7 2 TCGA-X9-A971-01A-11R-A38C-07 CTDSP1~C9orf3 fusion "CTDSP1," "C9orf3," chr2~chr9 219267128 97848964 3 ++ 1.098612 3 2 1 3 2 TCGA-X9-A971-01A-11R-A38C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 407 -- 2.068246 406 404 2 406 50 TCGA-X9-A971-01A-11R-A38C-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31239047 31324166 3 -- 1.098612 2 2 0 2 408 TCGA-X9-A971-01A-11R-A38C-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 83 -- 2.361866 76 25 50 76 28 TCGA-X9-A971-01A-11R-A38C-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32497902 32552155 7 -- 1.351784 2 1 1 2 2 TCGA-X9-A971-01A-11R-A38C-07 MACF1~Nchr13~53335208 intergenic "MACF1," "-," chr1~chr13 39793025 53335208 4 +- 1.386294 4 2 2 4 26 TCGA-X9-A971-01A-11R-A38C-07 MACF1~Nchr13~53355237 intergenic "MACF1," "-," chr1~chr13 39793025 53355237 3 +- 1.098612 3 2 1 3 6 TCGA-X9-A971-01A-11R-A38C-07 MACF1~Nchr13~53361144 intergenic "MACF1," "-," chr1~chr13 39793025 53361144 74 +- 2.955291 71 50 21 71 150 TCGA-X9-A971-01A-11R-A38C-07 MACF1~Nchr13~53361144 intergenic "MACF1," "-," chr1~chr13 39794378 53361144 34 +- 2.688072 34 18 16 34 68 TCGA-X9-A971-01A-11R-A38C-07 MACF1~Nchr13~53361144 intergenic "MACF1," "-," chr1~chr13 39796994 53361144 8 +- 1.494175 8 4 4 8 126 TCGA-X9-A971-01A-11R-A38C-07 MACF1~Nchr13~53361144 intergenic "MACF1," "-," chr1~chr13 39798548 53361144 5 +- 1.609438 4 2 2 4 4 TCGA-X9-A971-01A-11R-A38C-07 MACF1~Nchr13~53367991 intergenic "MACF1," "-," chr1~chr13 39793025 53367991 7 +- 1.94591 7 3 4 7 160 TCGA-X9-A971-01A-11R-A38C-07 MACF1~Nchr13~53367991 intergenic "MACF1," "-," chr1~chr13 39794378 53367991 5 +- 1.609438 5 2 3 5 76 TCGA-X9-A971-01A-11R-A38C-07 MPDU1~ALOX15B fusion "MPDU1,AC113189.5," "ALOX15B," chr17~chr17 7487236 7942704 3 -+ 1.098612 3 3 0 3 10 TCGA-X9-A971-01A-11R-A38C-07 NKD1~C21orf56 fusion "NKD1," "C21orf56," chr16~chr21 50583466 47588572 14 +- 2.069202 14 4 10 14 64 TCGA-X9-A971-01A-11R-A38C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 70 -+ 2.381156 34 0 34 34 48 TCGA-X9-A971-01A-11R-A38C-07 Nchr14~58448631~SLC35F4 intergenic "-," "SLC35F4," chr14~chr14 58448631 58060842 3 -- 1.098612 3 2 1 3 6 TCGA-X9-A971-01A-11R-A38C-07 Nchr14~76669470~Nchr14~76669558 intergenic "-," "-," chr14~chr14 76669470 76669558 2 -- 0.693147 2 2 0 2 2 TCGA-X9-A971-01A-11R-A38C-07 Nchr14~76673070~Nchr14~76672973 intergenic "-," "-," chr14~chr14 76673070 76672973 3 ++ 1.098612 3 3 0 3 2 TCGA-X9-A971-01A-11R-A38C-07 Nchr15~77712348~MTHFD1 intergenic "-," "MTHFD1," chr15~chr14 77712348 64916356 8 -- 2.079442 7 5 2 7 14 TCGA-X9-A971-01A-11R-A38C-07 Nchr15~77712348~Nchr14~64821640 intergenic "-," "-," chr15~chr14 77712348 64821640 2 -- 0.693147 2 1 1 2 8 TCGA-X9-A971-01A-11R-A38C-07 Nchr15~77712348~Nchr14~64824221 intergenic "-," "-," chr15~chr14 77712348 64824221 2 -- 0.693147 1 1 0 1 4 TCGA-X9-A971-01A-11R-A38C-07 Nchr18~37115422~Nchr18~36788753 intergenic "-," "-," chr18~chr18 37115422 36788753 5 -- 1.609438 5 5 0 5 16 TCGA-X9-A971-01A-11R-A38C-07 Nchr18~37331293~Nchr18~37115579 intergenic "-," "-," chr18~chr18 37331293 37115579 4 -- 1.039721 3 3 0 3 14 TCGA-X9-A971-01A-11R-A38C-07 Nchr19~3467591~Nchr19~3467689 intergenic "-," "-," chr19~chr19 3467591 3467689 2 -- 0.693147 2 0 2 2 2 TCGA-X9-A971-01A-11R-A38C-07 Nchr1~173445771~TNFSF4 intergenic "-," "TNFSF4," chr1~chr1 173445771 173157708 3 -- 0.636514 3 2 1 3 10 TCGA-X9-A971-01A-11R-A38C-07 Nchr2~177065915~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065915 177065788 4 ++ 1.039721 3 0 3 3 4 TCGA-X9-A971-01A-11R-A38C-07 Nchr3~59556125~FHIT intergenic "-," "FHIT," chr3~chr3 59556125 59795458 2 ++ 0.693147 2 1 1 2 12 TCGA-X9-A971-01A-11R-A38C-07 Nchr5~113441478~Nchr5~113696642 intergenic "-," "-," chr5~chr5 113441478 113696642 5 ++ 1.332179 5 4 1 5 22 TCGA-X9-A971-01A-11R-A38C-07 Nchr7~140912504~Nchr7~141137408 intergenic "-," "-," chr7~chr7 140912504 141137408 4 ++ 1.039721 2 2 0 2 6 TCGA-X9-A971-01A-11R-A38C-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40768381 3 ++ 1.098612 3 0 3 3 20 TCGA-X9-A971-01A-11R-A38C-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 259 ++ 2.793789 69 10 59 69 14 TCGA-X9-A971-01A-11R-A38C-07 NchrX~11074056~MID1 intergenic "-," "MID1," chrX~chrX 11074056 10535643 6 -- 1.56071 5 4 1 5 6 TCGA-X9-A971-01A-11R-A38C-07 PELI2~FOXN3 fusion "PELI2," "FOXN3," chr14~chr14 56585455 89878834 4 +- 1.039721 4 2 2 4 12 TCGA-X9-A971-01A-11R-A38C-07 RP11-335L9.1~Nchr3~177483365 intergenic "RP11-335L9.1," "-," chr3~chr3 177159898 177483365 9 ++ 2.043192 8 2 6 8 28 TCGA-X9-A971-01A-11R-A38C-07 RP11-335L9.1~Nchr3~177483365 intergenic "RP11-335L9.1," "-," chr3~chr3 177257281 177483365 3 ++ 1.098612 3 1 2 3 6 TCGA-X9-A971-01A-11R-A38C-07 RP11-371M22.1~Nchr5~113696642 intergenic "RP11-371M22.1," "-," chr5~chr5 113392868 113696642 2 ++ 0.693147 2 2 0 2 14 TCGA-X9-A971-01A-11R-A38C-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 5 +- 0.950271 5 0 5 5 2 TCGA-X9-A971-01A-11R-A38C-07 ZFP3~DGCR2 fusion "ZFP3," "DGCR2," chr17~chr22 4981870 19055738 5 +- 1.609438 5 2 3 5 16 TCGA-SI-AA8C-01A-11R-A38C-07 AC007001.4~PHF14 fusion "AC007001.4," "PHF14," chr7~chr7 20190212 11014462 6 ++ 1.791759 4 0 4 4 4 TCGA-SI-AA8C-01A-11R-A38C-07 ARHGAP24~MAPK10 fusion "ARHGAP24," "MAPK10," chr4~chr4 86863426 86938523 4 +- 1.039721 4 1 3 4 28 TCGA-SI-AA8C-01A-11R-A38C-07 ARHGAP24~MAPK10 fusion "ARHGAP24," "MAPK10," chr4~chr4 86863426 86938528 11 +- 1.641735 10 5 5 10 28 TCGA-SI-AA8C-01A-11R-A38C-07 ATRN~Nchr19~31397321 intergenic "ATRN," "-," chr20~chr19 3452164 31397321 123 ++ 3.147311 117 81 36 117 302 TCGA-SI-AA8C-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272593 94037159 4 -+ 1.039721 2 2 0 2 16 TCGA-SI-AA8C-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48270158 94038082 29 -+ 0.446244 2 1 1 2 4 TCGA-SI-AA8C-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272593 94047811 22 -+ 1.053472 21 21 0 21 14 TCGA-SI-AA8C-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48270001 94050330 3 -+ 1.098612 1 0 1 1 24 TCGA-SI-AA8C-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48269166 94053667 2 -+ 0.693147 2 1 1 2 10 TCGA-SI-AA8C-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264376 94054940 5 -+ 1.332179 3 2 1 3 22 TCGA-SI-AA8C-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48265891 94055310 4 -+ 1.039721 3 2 1 3 28 TCGA-SI-AA8C-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268840 189862445 3 -+ 0.636514 3 1 2 3 8 TCGA-SI-AA8C-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268840 189862992 6 -+ 1.011404 5 2 3 5 8 TCGA-SI-AA8C-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272828 189870076 4 -+ 1.039721 3 1 2 3 8 TCGA-SI-AA8C-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047864 48266636 8 +- 0.974315 7 1 6 7 30 TCGA-SI-AA8C-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94055161 48267441 2 +- 0.693147 1 0 1 1 14 TCGA-SI-AA8C-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049717 48269237 3 +- 0.636514 2 1 1 2 6 TCGA-SI-AA8C-01A-11R-A38C-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94049756 189859267 2 ++ 0.693147 2 1 1 2 2 TCGA-SI-AA8C-01A-11R-A38C-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94051264 189864196 17 ++ 1.90542 17 1 16 17 8 TCGA-SI-AA8C-01A-11R-A38C-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94049756 189868460 8 ++ 1.213008 6 0 6 6 8 TCGA-SI-AA8C-01A-11R-A38C-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189858185 94040368 2 ++ 0.693147 1 0 1 1 4 TCGA-SI-AA8C-01A-11R-A38C-07 COL6A2~Nchr21~40406444 intergenic "COL6A2," "-," chr21~chr21 47536728 40406444 6 +- 1.56071 4 3 1 4 16 TCGA-SI-AA8C-01A-11R-A38C-07 CTD-2337A12.1~CAST fusion "CTD-2337A12.1," "CAST," chr5~chr5 95715356 96011243 4 ++ 1.386294 1 0 1 1 6 TCGA-SI-AA8C-01A-11R-A38C-07 KLF12~UCHL3 fusion "KLF12," "UCHL3," chr13~chr13 74518118 76134889 3 -+ 1.098612 2 1 1 2 8 TCGA-SI-AA8C-01A-11R-A38C-07 LRP5L~SGSM3 fusion "LRP5L," "SGSM3," chr22~chr22 25771780 40796700 9 -+ 2.043192 9 5 4 9 22 TCGA-SI-AA8C-01A-11R-A38C-07 LTBP4~Nchr3~162791593 intergenic "LTBP4," "-," chr19~chr3 41106083 162791593 19 +- 2.479122 19 10 9 19 76 TCGA-SI-AA8C-01A-11R-A38C-07 MAP2K3~FAM133B fusion "MAP2K3," "FAM133B," chr17~chr7 21216849 92207031 9 +- 1.83102 8 4 4 8 2 TCGA-SI-AA8C-01A-11R-A38C-07 MLL5~MAP2K3 fusion "MLL5," "MAP2K3," chr7~chr17 104715262 21215454 14 ++ 2.441015 13 8 5 13 8 TCGA-SI-AA8C-01A-11R-A38C-07 NOD1~AC073316.1 fusion "NOD1," "AC073316.1," chr7~chr7 30472712 3304421 2 -- 0.693147 2 0 2 2 6 TCGA-SI-AA8C-01A-11R-A38C-07 Nchr11~27603266~RPS25 intergenic "-," "RPS25," chr11~chr11 27603266 118888759 2 -- 0.693147 2 2 0 2 192 TCGA-SI-AA8C-01A-11R-A38C-07 Nchr11~47213097~RPS20 intergenic "-," "RPS20," chr11~chr8 47213097 56986962 2 +- 0.693147 2 0 2 2 30 TCGA-SI-AA8C-01A-11R-A38C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 36 -+ 2.368709 18 0 18 18 16 TCGA-SI-AA8C-01A-11R-A38C-07 Nchr12~104659073~Nchr12~104659181 intergenic "-," "-," chr12~chr12 104659073 104659181 4 -- 1.039721 4 4 0 4 12 TCGA-SI-AA8C-01A-11R-A38C-07 Nchr14~45066112~Nchr14~44862941 intergenic "-," "-," chr14~chr14 45066112 44862941 6 -- 1.56071 2 1 1 2 10 TCGA-SI-AA8C-01A-11R-A38C-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 4 ++ 1.386294 3 0 3 3 10 TCGA-SI-AA8C-01A-11R-A38C-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 6 ++ 1.791759 4 1 3 4 4 TCGA-SI-AA8C-01A-11R-A38C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 33 -+ 2.774699 32 21 11 32 210 TCGA-SI-AA8C-01A-11R-A38C-07 Nchr2~122702023~Nchr2~122978395 intergenic "-," "-," chr2~chr2 122702023 122978395 5 ++ 1.609438 3 3 0 3 8 TCGA-SI-AA8C-01A-11R-A38C-07 Nchr6~8558876~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8558876 8784424 4 ++ 1.386294 1 0 1 1 2 TCGA-SI-AA8C-01A-11R-A38C-07 Nchr7~12134279~Nchr7~6875340 intergenic "-," "-," chr7~chr7 12134279 6875340 20 -- 2.622996 8 4 4 8 30 TCGA-SI-AA8C-01A-11R-A38C-07 Nchr7~12363120~Nchr7~12134361 intergenic "-," "-," chr7~chr7 12363120 12134361 7 -- 1.747868 1 1 0 1 6 TCGA-SI-AA8C-01A-11R-A38C-07 Nchr9~19230831~ECSIT intergenic "-," "ECSIT," chr9~chr19 19230831 11632157 4 ++ 1.386294 3 2 1 3 32 TCGA-SI-AA8C-01A-11R-A38C-07 Nchr9~19230831~ECSIT intergenic "-," "ECSIT," chr9~chr19 19230831 11632290 17 ++ 2.15006 17 14 3 17 24 TCGA-SI-AA8C-01A-11R-A38C-07 Nchr9~19230831~ZNF653 intergenic "-," "ZNF653," chr9~chr19 19230831 11614278 11 ++ 1.84622 11 9 2 11 10 TCGA-SI-AA8C-01A-11R-A38C-07 Nchr9~19230831~ZNF653 intergenic "-," "ZNF653," chr9~chr19 19230831 11614327 2 ++ 0.693147 1 1 0 1 4 TCGA-SI-AA8C-01A-11R-A38C-07 Nchr9~33624403~Nchr9~33624576 intergenic "-," "-," chr9~chr9 33624403 33624576 2 -- 0.693147 2 2 0 2 2 TCGA-SI-AA8C-01A-11R-A38C-07 PPP2R1A~Nchr3~90160303 intergenic "PPP2R1A," "-," chr19~chr3 52724386 90160303 23 +- 2.592787 21 8 12 21 36 TCGA-SI-AA8C-01A-11R-A38C-07 PRPF6~Nchr14~21603965 intergenic "PRPF6," "-," chr20~chr14 62648198 21603965 37 ++ 2.405784 38 13 20 38 30 TCGA-SI-AA8C-01A-11R-A38C-07 PSMF1~CHST8 fusion "PSMF1," "CHST8," chr20~chr19 1106293 34171674 2 ++ 0.693147 2 1 1 2 80 TCGA-SI-AA8C-01A-11R-A38C-07 PSMF1~CHST8 fusion "PSMF1," "CHST8," chr20~chr19 1106293 34180082 32 ++ 2.721371 32 20 12 32 74 TCGA-SI-AA8C-01A-11R-A38C-07 RP11-1E3.1~RP11-455B3.1 fusion "RP11-1E3.1," "RP11-455B3.1," chr5~chr5 97006388 97217134 3 ++ 1.098612 2 1 1 2 4 TCGA-SI-AA8C-01A-11R-A38C-07 RP11-328J2.1~Nchr7~119140163 intergenic "RP11-328J2.1," "-," chr7~chr7 119353720 119140163 2 -- 0.693147 1 1 0 1 6 TCGA-SI-AA8C-01A-11R-A38C-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 3 ++ 1.098612 3 2 1 3 10 TCGA-SI-AA8C-01A-11R-A38C-07 RPS12~Nchr6~151547126 intergenic "RPS12," "-," chr6~chr6 133135708 151547126 4 -- 1.386294 2 0 2 2 98 TCGA-SI-AA8C-01A-11R-A38C-07 SLC26A11~Nchr4~82278155 intergenic "SLC26A11," "-," chr17~chr4 78223086 82278155 3 ++ 0.636514 3 0 3 3 6 TCGA-SI-AA8C-01A-11R-A38C-07 TTC23~Nchr7~159008586 intergenic "TTC23," "-," chr15~chr7 99715255 159008586 11 -- 2.271869 11 8 3 11 24 TCGA-SI-AA8C-01A-11R-A38C-07 XPO6~Nchr7~42686919 intergenic "XPO6," "-," chr16~chr7 28222687 42686919 2 -+ 0.693147 2 0 2 2 4 TCGA-SI-AA8B-01A-11R-A38C-07 C13orf18~CUBN fusion "C13orf18," "CUBN," chr13~chr10 46961269 16893442 30 -- 2.811796 29 20 9 29 144 TCGA-SI-AA8B-01A-11R-A38C-07 C13orf18~CUBN fusion "C13orf18," "CUBN," chr13~chr10 46961812 16893442 43 -- 2.705618 42 24 18 42 52 TCGA-SI-AA8B-01A-11R-A38C-07 C13orf18~CUBN fusion "C13orf18," "CUBN," chr13~chr10 46960551 16893442 18 -- 2.476221 17 10 7 17 70 TCGA-SI-AA8B-01A-11R-A38C-07 C13orf18~CUBN fusion "C13orf18," "CUBN," chr13~chr10 46960453 16893442 3 -- 1.098612 3 3 0 3 78 TCGA-SI-AA8B-01A-11R-A38C-07 C15orf57~CBX3 fusion "C15orf57," "CBX3," chr15~chr7 40854971 26241389 4 -+ 1.039721 4 3 1 4 12 TCGA-SI-AA8B-01A-11R-A38C-07 C1orf196~KAZN fusion "C1orf196," "KAZN," chr1~chr1 14507087 14925479 17 ++ 2.196756 11 7 4 11 36 TCGA-SI-AA8B-01A-11R-A38C-07 C1orf196~KAZN fusion "C1orf196," "KAZN," chr1~chr1 14507087 14966288 3 ++ 1.098612 3 0 3 3 2 TCGA-SI-AA8B-01A-11R-A38C-07 C1orf196~Nchr1~14858532 intergenic "C1orf196," "-," chr1~chr1 14507087 14858532 4 ++ 1.039721 4 4 0 4 2 TCGA-SI-AA8B-01A-11R-A38C-07 C1orf21~ANGPTL1 fusion "C1orf21," "ANGPTL1," chr1~chr1 184446737 178838358 4 +- 1.386294 4 1 3 4 2 TCGA-SI-AA8B-01A-11R-A38C-07 CDK8~GCNT7 fusion "CDK8," "GCNT7," chr13~chr20 26928017 55070353 25 +- 2.511595 13 8 5 13 50 TCGA-SI-AA8B-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264376 94038082 3 -+ 0.636514 2 2 0 2 8 TCGA-SI-AA8B-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94042395 2 -+ 0.693147 1 1 0 1 14 TCGA-SI-AA8B-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48269836 94043206 3 -+ 1.098612 2 2 0 2 4 TCGA-SI-AA8B-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266103 94049703 3 -+ 1.098612 2 1 1 2 26 TCGA-SI-AA8B-01A-11R-A38C-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267040 94052269 4 -+ 1.039721 2 0 2 2 52 TCGA-SI-AA8B-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266738 189861891 12 -+ 1.143708 2 0 2 2 10 TCGA-SI-AA8B-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268840 189862426 4 -+ 1.386294 4 1 3 4 8 TCGA-SI-AA8B-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266755 189864587 2 -+ 0.693147 1 1 0 1 22 TCGA-SI-AA8B-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272593 189867690 5 -+ 1.332179 1 1 0 1 16 TCGA-SI-AA8B-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266738 189868137 7 -+ 1.747868 5 2 3 5 30 TCGA-SI-AA8B-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48270158 189868137 7 -+ 1.277034 3 0 3 3 6 TCGA-SI-AA8B-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48271491 189868137 3 -+ 1.098612 2 2 0 2 16 TCGA-SI-AA8B-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265891 189872611 3 -+ 0.636514 2 2 0 2 16 TCGA-SI-AA8B-01A-11R-A38C-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48263292 189875464 3 -+ 1.098612 2 1 1 2 18 TCGA-SI-AA8B-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94048824 48265983 3 +- 1.098612 2 1 1 2 4 TCGA-SI-AA8B-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48266636 5 +- 1.609438 3 2 1 3 14 TCGA-SI-AA8B-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94052323 48266844 2 +- 0.693147 2 1 1 2 46 TCGA-SI-AA8B-01A-11R-A38C-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48273560 4 +- 1.039721 1 0 1 1 18 TCGA-SI-AA8B-01A-11R-A38C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189868762 48261909 2 +- 0.693147 2 1 1 2 4 TCGA-SI-AA8B-01A-11R-A38C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189864303 48265317 3 +- 1.098612 3 0 3 3 24 TCGA-SI-AA8B-01A-11R-A38C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189871716 48265510 10 +- 1.643418 10 1 9 10 40 TCGA-SI-AA8B-01A-11R-A38C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870985 48265911 2 +- 0.693147 2 1 1 2 22 TCGA-SI-AA8B-01A-11R-A38C-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189856448 48266636 3 +- 1.098612 1 1 0 1 6 TCGA-SI-AA8B-01A-11R-A38C-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189864303 94047811 2 ++ 0.693147 1 0 1 1 20 TCGA-SI-AA8B-01A-11R-A38C-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189871675 94056942 8 ++ 1.213008 8 2 6 8 2 TCGA-SI-AA8B-01A-11R-A38C-07 COMMD7~DUSP15 fusion "COMMD7," "DUSP15," chr20~chr20 31331114 30457400 4 -- 1.039721 4 3 1 4 28 TCGA-SI-AA8B-01A-11R-A38C-07 CTDSP1~RP5-1116C7.1 fusion "CTDSP1," "RP5-1116C7.1," chr2~chr1 219267128 172113577 2 +- 0.693147 2 1 1 2 2 TCGA-SI-AA8B-01A-11R-A38C-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 2 +- 0.693147 2 1 1 2 16 TCGA-SI-AA8B-01A-11R-A38C-07 GCNT7~Nchr13~85166593 intergenic "GCNT7," "-," chr20~chr13 55070258 85166593 7 -+ 1.549826 5 5 0 5 4 TCGA-SI-AA8B-01A-11R-A38C-07 GCNT7~Nchr13~85193920 intergenic "GCNT7," "-," chr20~chr13 55070258 85193920 26 -+ 2.491505 12 12 0 12 22 TCGA-SI-AA8B-01A-11R-A38C-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 64 -- 2.068197 66 0 64 66 22 TCGA-SI-AA8B-01A-11R-A38C-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 154 -- 2.522211 84 21 63 84 2 TCGA-SI-AA8B-01A-11R-A38C-07 KIAA1211~Nchr3~176138784 intergenic "KIAA1211," "-," chr4~chr3 57045596 176138784 22 +- 2.413341 17 13 4 17 42 TCGA-SI-AA8B-01A-11R-A38C-07 KIAA1211~Nchr3~176138784 intergenic "KIAA1211," "-," chr4~chr3 57062593 176138784 2 +- 0.693147 2 0 2 2 46 TCGA-SI-AA8B-01A-11R-A38C-07 KIF5B~Nchr3~170370580 intergenic "KIF5B," "-," chr10~chr3 32344776 170370580 2 -+ 0.693147 2 1 1 2 4 TCGA-SI-AA8B-01A-11R-A38C-07 KIF5B~Nchr3~176638802 intergenic "KIF5B," "-," chr10~chr3 32344776 176638802 7 -+ 1.94591 7 5 2 7 24 TCGA-SI-AA8B-01A-11R-A38C-07 LNX1~Nchr4~188649915 intergenic "LNX1," "-," chr4~chr4 54373484 188649915 4 -- 1.386294 4 2 2 4 28 TCGA-SI-AA8B-01A-11R-A38C-07 LNX1~Nchr4~188652360 intergenic "LNX1," "-," chr4~chr4 54373484 188652360 5 -- 1.332179 5 4 1 5 30 TCGA-SI-AA8B-01A-11R-A38C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 38 -+ 2.374685 23 0 23 23 12 TCGA-SI-AA8B-01A-11R-A38C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 32 -+ 2.609921 32 21 11 32 214 TCGA-SI-AA8B-01A-11R-A38C-07 Nchr2~177065789~Nchr2~177065913 intergenic "-," "-," chr2~chr2 177065789 177065913 2 -- 0.693147 2 0 2 2 2 TCGA-SI-AA8B-01A-11R-A38C-07 Nchr2~177065915~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065915 177065788 5 ++ 1.05492 5 0 5 5 4 TCGA-SI-AA8B-01A-11R-A38C-07 Nchr5~177482932~Nchr5~177483079 intergenic "-," "-," chr5~chr5 177482932 177483079 2 -- 0.693147 2 2 0 2 2 TCGA-SI-AA8B-01A-11R-A38C-07 NchrX~36982319~NchrX~36698022 intergenic "-," "-," chrX~chrX 36982319 36698022 8 -- 1.906155 8 4 4 8 32 TCGA-SI-AA8B-01A-11R-A38C-07 PDGFRA~Nchr4~182299094 intergenic "PDGFRA," "-," chr4~chr4 55095582 182299094 11 +- 2.019815 11 5 6 11 56 TCGA-SI-AA8B-01A-11R-A38C-07 PHACTR3~BCAS1 fusion "PHACTR3," "BCAS1," chr20~chr20 58152672 52675262 16 +- 2.273966 13 13 0 13 6 TCGA-SI-AA8B-01A-11R-A38C-07 PHACTR3~Nchr20~59543523 intergenic "PHACTR3," "-," chr20~chr20 58152672 59543523 8 +- 1.732868 8 0 8 8 2 TCGA-SI-AA8B-01A-11R-A38C-07 PTPRM~Nchr18~4289237 intergenic "PTPRM," "-," chr18~chr18 7955412 4289237 8 ++ 1.906155 7 6 1 7 56 TCGA-SI-AA8B-01A-11R-A38C-07 PTPRM~Nchr18~4293160 intergenic "PTPRM," "-," chr18~chr18 7955412 4293160 27 ++ 2.486914 27 7 20 27 56 TCGA-SI-AA8B-01A-11R-A38C-07 RB1~C13orf18 fusion "RB1," "C13orf18," chr13~chr13 48955579 46918966 5 +- 1.609438 5 2 3 5 26 TCGA-SI-AA8B-01A-11R-A38C-07 RORA~PTPN9 fusion "RORA," "PTPN9," chr15~chr15 60884586 75798344 11 -- 1.666333 11 1 10 11 12 TCGA-SI-AA8B-01A-11R-A38C-07 SHC1~Nchr17~42306882 intergenic "SHC1," "-," chr1~chr17 154938544 42306882 2 ++ 0.693147 2 2 0 2 2 TCGA-SI-AA8B-01A-11R-A38C-07 TNKS1BP1~Nchr15~58884780 intergenic "TNKS1BP1," "-," chr11~chr15 57085292 58884780 3 -- 1.098612 3 1 2 3 10 TCGA-WK-A8XX-01A-11R-A37L-07 AAK1~Nchr2~70554372 intergenic "AAK1," "-," chr2~chr2 69870010 70554372 4 -+ 1.386294 4 2 2 4 20 TCGA-WK-A8XX-01A-11R-A37L-07 CTD-2337A12.1~CAST fusion "CTD-2337A12.1," "CAST," chr5~chr5 95715356 96011243 14 ++ 1.809514 11 3 8 11 22 TCGA-WK-A8XX-01A-11R-A37L-07 EXOC6B~Nchr2~82075877 intergenic "EXOC6B," "-," chr2~chr2 73052927 82075877 89 -+ 2.933049 88 50 38 88 210 TCGA-WK-A8XX-01A-11R-A37L-07 FN1~Nchr2~215721188 intergenic "FN1," "-," chr2~chr2 216229602 215721188 8 -- 1.906155 8 4 4 8 20 TCGA-WK-A8XX-01A-11R-A37L-07 FN1~Nchr2~215737641 intergenic "FN1," "-," chr2~chr2 216229602 215737641 10 -- 1.834372 10 3 7 10 10 TCGA-WK-A8XX-01A-11R-A37L-07 FN1~Nchr2~215745000 intergenic "FN1," "-," chr2~chr2 216229602 215745000 8 -- 1.906155 7 3 4 7 28 TCGA-WK-A8XX-01A-11R-A37L-07 FN1~Nchr2~215757020 intergenic "FN1," "-," chr2~chr2 216229602 215757020 2 -- 0.693147 2 2 0 2 2 TCGA-WK-A8XX-01A-11R-A37L-07 GAPDH~NchrX~46299827 intergenic "GAPDH," "-," chr12~chrX 6646369 46299827 7 -- 1.747868 1 1 0 1 8 TCGA-WK-A8XX-01A-11R-A37L-07 GIGYF2~EEF1B2 fusion "GIGYF2," "EEF1B2," chr2~chr2 233594854 207024743 3 ++ 1.098612 2 2 0 2 2 TCGA-WK-A8XX-01A-11R-A37L-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 334 -- 2.480644 334 334 0 334 118 TCGA-WK-A8XX-01A-11R-A37L-07 HN1~Nchr2~174296244 intergenic "HN1," "-," chr17~chr2 73143651 174296244 28 -- 1.310606 13 13 0 13 2 TCGA-WK-A8XX-01A-11R-A37L-07 JPH2~Nchr9~104244430 intergenic "JPH2," "-," chr20~chr9 42788258 104244430 8 -+ 1.494175 7 4 3 7 6 TCGA-WK-A8XX-01A-11R-A37L-07 JPH2~RNF20 fusion "JPH2," "RNF20," chr20~chr9 42788258 104297680 4 -+ 1.386294 4 2 2 4 12 TCGA-WK-A8XX-01A-11R-A37L-07 JPH2~RP11-490D19.6 fusion "JPH2," "RP11-490D19.6," chr20~chr9 42788258 104243645 9 -+ 1.676988 9 3 6 9 12 TCGA-WK-A8XX-01A-11R-A37L-07 MPDU1~SPEM1 fusion "MPDU1,AC113189.5," "SPEM1," chr17~chr17 7487283 7323946 12 ++ 2.094729 12 8 4 12 36 TCGA-WK-A8XX-01A-11R-A37L-07 NUPL1~SPATA13 fusion "NUPL1," "SPATA13," chr13~chr13 25889605 24796957 6 ++ 1.56071 6 0 6 6 4 TCGA-WK-A8XX-01A-11R-A37L-07 Nchr15~55105551~UNC13C intergenic "-," "UNC13C," chr15~chr15 55105551 54865484 2 -- 0.693147 2 1 1 2 6 TCGA-WK-A8XX-01A-11R-A37L-07 Nchr15~55155511~UNC13C intergenic "-," "UNC13C," chr15~chr15 55155511 54908457 2 -- 0.693147 1 0 1 1 6 TCGA-WK-A8XX-01A-11R-A37L-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 3 ++ 1.098612 3 2 1 3 8 TCGA-WK-A8XX-01A-11R-A37L-07 Nchr18~37115422~Nchr18~36813494 intergenic "-," "-," chr18~chr18 37115422 36813494 2 -- 0.693147 2 2 0 2 6 TCGA-WK-A8XX-01A-11R-A37L-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 28 -+ 2.966943 27 19 8 27 278 TCGA-WK-A8XX-01A-11R-A37L-07 Nchr1~76081538~SLC44A5 intergenic "-," "SLC44A5," chr1~chr1 76081538 75805315 18 -- 2.289273 13 11 2 13 2 TCGA-WK-A8XX-01A-11R-A37L-07 Nchr2~78712920~Nchr2~78588656 intergenic "-," "-," chr2~chr2 78712920 78588656 3 -+ 1.098612 2 2 0 2 2 TCGA-WK-A8XX-01A-11R-A37L-07 Nchr6~30002685~Nchr11~352898 intergenic "-," "-," chr6~chr11 30002685 352898 3 -+ 1.098612 3 2 1 3 2 TCGA-WK-A8XX-01A-11R-A37L-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40768381 4 ++ 0.562335 3 0 3 3 10 TCGA-WK-A8XX-01A-11R-A37L-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 103 ++ 2.62609 19 0 19 19 8 TCGA-WK-A8XX-01A-11R-A37L-07 PPARA~NFIC fusion "PPARA," "NFIC," chr22~chr19 46547873 3456548 8 ++ 1.906155 7 5 2 7 8 TCGA-WK-A8XX-01A-11R-A37L-07 RNF217~ANKRD6 fusion "RNF217," "ANKRD6," chr6~chr6 125284572 90338831 12 ++ 1.86368 12 5 7 12 22 TCGA-WK-A8XX-01A-11R-A37L-07 RP11-335L9.1~RP11-91K9.1 fusion "RP11-335L9.1," "RP11-91K9.1," chr3~chr3 177347343 177613401 2 ++ 0.693147 2 1 1 2 4 TCGA-WK-A8XX-01A-11R-A37L-07 RP11-466L17.1~RP11-90C4.1 fusion "RP11-466L17.1," "RP11-90C4.1," chr1~chr1 56080675 56297937 4 ++ 1.386294 4 2 2 4 8 TCGA-WK-A8XX-01A-11R-A37L-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 8 ++ 1.906155 8 3 5 8 14 TCGA-WK-A8XX-01A-11R-A37L-07 SKI~Nchr1~13970790 intergenic "SKI," "-," chr1~chr1 2236024 13970790 2 +- 0.693147 2 1 1 2 4 TCGA-WK-A8XX-01A-11R-A37L-07 TMEM147~LLGL1 fusion "TMEM147," "LLGL1," chr19~chr17 36036718 18133255 2 ++ 0.693147 2 1 1 2 4 TCGA-WK-A8XX-01A-11R-A37L-07 ZMYM2~MPHOSPH8 fusion "ZMYM2," "MPHOSPH8," chr13~chr13 20534166 20216255 49 ++ 2.659944 45 28 16 45 132 TCGA-WK-A8XX-01A-11R-A37L-07 ZMYM2~MPHOSPH8 fusion "ZMYM2," "MPHOSPH8," chr13~chr13 20539421 20216255 3 ++ 1.098612 1 0 1 1 114 TCGA-WK-A8XT-01A-11R-A37L-07 AC011288.2~Nchr7~13757402 intergenic "AC011288.2," "-," chr7~chr7 13349948 13757402 6 ++ 1.56071 3 1 2 3 12 TCGA-WK-A8XT-01A-11R-A37L-07 C16orf72~Nchr16~9075583 intergenic "C16orf72," "-," chr16~chr16 9186858 9075583 28 ++ 2.093474 28 21 7 28 78 TCGA-WK-A8XT-01A-11R-A37L-07 C16orf72~Nchr16~9136472 intergenic "C16orf72," "-," chr16~chr16 9186858 9136472 72 ++ 2.793456 68 47 21 68 102 TCGA-WK-A8XT-01A-11R-A37L-07 EIF1~Nchr17~21163258 intergenic "EIF1," "-," chr17~chr17 39847063 21163258 2 ++ 0.693147 2 0 2 2 2 TCGA-WK-A8XT-01A-11R-A37L-07 NOTCH2~RP4-655J12.4 fusion "NOTCH2," "RP4-655J12.4," chr1~chr1 120478095 116971116 4 -- 1.039721 3 2 1 3 6 TCGA-WK-A8XT-01A-11R-A37L-07 Nchr11~27603266~RPS25 intergenic "-," "RPS25," chr11~chr11 27603266 118888759 7 -- 1.747868 7 5 2 7 420 TCGA-WK-A8XT-01A-11R-A37L-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 81 -+ 2.424901 44 0 44 44 40 TCGA-WK-A8XT-01A-11R-A37L-07 Nchr12~95267416~TMCC3 intergenic "-," "TMCC3," chr12~chr12 95267416 94976314 14 -- 2.205598 13 13 0 13 24 TCGA-WK-A8XT-01A-11R-A37L-07 Nchr13~22615523~Nchr13~22848662 intergenic "-," "-," chr13~chr13 22615523 22848662 3 ++ 1.098612 3 1 2 3 10 TCGA-WK-A8XT-01A-11R-A37L-07 Nchr14~72399658~RGS6 intergenic "-," "RGS6," chr14~chr14 72399658 72818803 3 ++ 1.098612 2 1 1 2 12 TCGA-WK-A8XT-01A-11R-A37L-07 Nchr14~99439559~RPL3 intergenic "-," "RPL3," chr14~chr22 99439559 39710201 2 -+ 0.693147 1 0 1 1 138 TCGA-WK-A8XT-01A-11R-A37L-07 Nchr15~70640197~Nchr15~70423230 intergenic "-," "-," chr15~chr15 70640197 70423230 7 -- 1.747868 3 3 0 3 2 TCGA-WK-A8XT-01A-11R-A37L-07 Nchr15~70878214~Nchr15~70423230 intergenic "-," "-," chr15~chr15 70878214 70423230 12 -- 2.369382 12 8 4 12 24 TCGA-WK-A8XT-01A-11R-A37L-07 Nchr15~70878214~Nchr15~70430487 intergenic "-," "-," chr15~chr15 70878214 70430487 2 -- 0.693147 2 1 1 2 2 TCGA-WK-A8XT-01A-11R-A37L-07 Nchr15~70878214~Nchr15~70640258 intergenic "-," "-," chr15~chr15 70878214 70640258 6 -- 1.56071 3 0 3 3 12 TCGA-WK-A8XT-01A-11R-A37L-07 Nchr16~73925550~Nchr16~73714139 intergenic "-," "-," chr16~chr16 73925550 73714139 44 -- 2.89626 20 14 6 20 6 TCGA-WK-A8XT-01A-11R-A37L-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 6 ++ 1.329661 6 1 5 6 8 TCGA-WK-A8XT-01A-11R-A37L-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 5 ++ 1.609438 5 3 2 5 8 TCGA-WK-A8XT-01A-11R-A37L-07 Nchr17~5740569~WSCD1 intergenic "-," "WSCD1," chr17~chr17 5740569 5983691 7 ++ 1.94591 4 1 3 4 12 TCGA-WK-A8XT-01A-11R-A37L-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 4 ++ 1.386294 2 0 2 2 14 TCGA-WK-A8XT-01A-11R-A37L-07 Nchr2~122702023~Nchr2~122978395 intergenic "-," "-," chr2~chr2 122702023 122978395 3 ++ 1.098612 1 1 0 1 2 TCGA-WK-A8XT-01A-11R-A37L-07 Nchr4~4546634~Nchr4~4822133 intergenic "-," "-," chr4~chr4 4546634 4822133 3 ++ 1.098612 3 3 0 3 6 TCGA-WK-A8XT-01A-11R-A37L-07 Nchr6~1389254~AL033381.1 intergenic "-," "AL033381.1," chr6~chr6 1389254 1101761 3 -- 1.098612 2 1 1 2 8 TCGA-WK-A8XT-01A-11R-A37L-07 Nchr6~8438264~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8438264 8784424 2 ++ 0.693147 2 0 2 2 12 TCGA-WK-A8XT-01A-11R-A37L-07 Nchr6~86388252~Nchr6~86388350 intergenic "-," "-," chr6~chr6 86388252 86388350 3 -- 1.098612 3 0 3 3 2 TCGA-WK-A8XT-01A-11R-A37L-07 Nchr7~91282045~RP11-142A5.1 intergenic "-," "RP11-142A5.1," chr7~chr7 91282045 91010182 3 -- 1.098612 3 1 2 3 8 TCGA-WK-A8XT-01A-11R-A37L-07 Nchr9~17906920~Nchr9~18163860 intergenic "-," "-," chr9~chr9 17906920 18163860 4 ++ 1.386294 2 2 0 2 12 TCGA-WK-A8XT-01A-11R-A37L-07 Nchr9~18163979~ADAMTSL1 intergenic "-," "ADAMTSL1," chr9~chr9 18163979 18504827 4 ++ 1.386294 1 1 0 1 2 TCGA-WK-A8XT-01A-11R-A37L-07 Nchr9~19200532~RPS6 intergenic "-," "RPS6," chr9~chr9 19200532 19378478 2 -- 0.693147 2 0 2 2 70 TCGA-WK-A8XT-01A-11R-A37L-07 Nchr9~85111773~Nchr9~85394794 intergenic "-," "-," chr9~chr9 85111773 85394794 4 ++ 1.039721 4 1 3 4 12 TCGA-WK-A8XT-01A-11R-A37L-07 NchrX~64295792~NchrX~64586518 intergenic "-," "-," chrX~chrX 64295792 64586518 6 ++ 1.56071 6 3 3 6 8 TCGA-WK-A8XT-01A-11R-A37L-07 NchrX~73494177~NchrX~73251651 intergenic "-," "-," chrX~chrX 73494177 73251651 3 -- 0.636514 3 1 2 3 2 TCGA-WK-A8XT-01A-11R-A37L-07 RP11-123O10.4~GRIP1 fusion "RP11-123O10.4," "GRIP1," chr12~chr12 67462830 66990707 2 -- 0.693147 2 0 2 2 2 TCGA-WK-A8XT-01A-11R-A37L-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 3 +- 1.098612 1 0 1 1 2 TCGA-WK-A8XT-01A-11R-A37L-07 SHC1~Nchr17~42306882 intergenic "SHC1," "-," chr1~chr17 154938544 42306882 2 ++ 0.693147 1 1 0 1 10 TCGA-3B-A9I3-01A-11R-A39D-07 BAIAP2~Nchr13~27413001 intergenic "BAIAP2," "-," chr17~chr13 79031767 27413001 7 ++ 1.94591 7 1 6 7 10 TCGA-3B-A9I3-01A-11R-A39D-07 CHIC1~HDAC8 fusion "CHIC1," "HDAC8," chrX~chrX 72804408 71571688 10 +- 1.609438 10 7 3 10 30 TCGA-3B-A9I3-01A-11R-A39D-07 FAM126A~AC099759.1 fusion "FAM126A," "AC099759.1," chr7~chr7 23015829 22459455 113 -- 2.817452 109 83 26 109 400 TCGA-3B-A9I3-01A-11R-A39D-07 FAM126A~AC099759.1 fusion "FAM126A," "AC099759.1," chr7~chr7 23015829 22490804 7 -- 1.747868 6 1 5 6 384 TCGA-3B-A9I3-01A-11R-A39D-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31237288 31323151 4 -- 1.039721 3 1 2 3 4 TCGA-3B-A9I3-01A-11R-A39D-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 290 -- 2.069763 288 287 1 288 186 TCGA-3B-A9I3-01A-11R-A39D-07 KIAA1949~TNXB fusion "KIAA1949," "TNXB," chr6~chr6 30652185 32021488 10 -- 2.025326 9 3 6 9 26 TCGA-3B-A9I3-01A-11R-A39D-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 53 -+ 2.430896 22 0 22 22 24 TCGA-3B-A9I3-01A-11R-A39D-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 9 -+ 2.197225 7 3 4 7 166 TCGA-3B-A9I3-01A-11R-A39D-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 8 ++ 1.906155 5 2 3 5 18 TCGA-3B-A9I3-01A-11R-A39D-07 Nchr4~24473998~Nchr2~105273461 intergenic "-," "-," chr4~chr2 24473998 105273461 6 -- 1.791759 5 3 2 5 10 TCGA-3B-A9I3-01A-11R-A39D-07 PDLIM5~Nchr7~19707794 intergenic "PDLIM5," "-," chr4~chr7 95376535 19707794 47 ++ 2.76642 46 33 13 46 122 TCGA-3B-A9I3-01A-11R-A39D-07 PDLIM5~Nchr7~19852453 intergenic "PDLIM5," "-," chr4~chr7 95376535 19852453 3 ++ 1.098612 2 1 1 2 6 TCGA-3B-A9I3-01A-11R-A39D-07 STAG1~Nchr3~136527876 intergenic "STAG1," "-," chr3~chr3 136305644 136527876 3 -- 0.636514 3 2 1 3 66 TCGA-3B-A9I3-01A-11R-A39D-07 STAG1~Nchr3~136527876 intergenic "STAG1," "-," chr3~chr3 136323151 136527876 20 -- 2.415052 20 8 12 20 62 TCGA-3B-A9I3-01A-11R-A39D-07 TPM2~ACTG1 fusion "TPM2," "ACTG1," chr9~chr17 35685061 79478652 5 -- 1.609438 5 2 3 5 10 TCGA-3B-A9I3-01A-11R-A39D-07 TPM2~MYH11 fusion "TPM2," "MYH11," chr9~chr16 35689701 15812246 2 -- 0.693147 2 0 2 2 10 TCGA-3B-A9I3-01A-11R-A39D-07 TSC22D3~NchrX~78961990 intergenic "TSC22D3," "-," chrX~chrX 106959129 78961990 15 -+ 2.523211 8 0 8 8 8 TCGA-3B-A9HV-01A-11R-A39D-07 ACTA2~ACTG2 fusion "ACTA2," "ACTG2," chr10~chr2 90708637 74128487 2 -+ 0.693147 1 0 1 1 4 TCGA-3B-A9HV-01A-11R-A39D-07 ADCY2~Nchr5~6297258 intergenic "ADCY2," "-," chr5~chr5 7396619 6297258 5 ++ 1.609438 5 4 1 5 16 TCGA-3B-A9HV-01A-11R-A39D-07 ATRX~NchrX~90464231 intergenic "ATRX," "-," chrX~chrX 77041468 90464231 3 -+ 1.098612 2 1 1 2 4 TCGA-3B-A9HV-01A-11R-A39D-07 C9orf102~CDC14B fusion "C9orf102," "CDC14B," chr9~chr9 98766983 99304174 21 +- 2.582424 5 5 0 5 4 TCGA-3B-A9HV-01A-11R-A39D-07 C9orf3~RP11-572M11.1 fusion "C9orf3," "RP11-572M11.1," chr9~chr3 97823092 112770552 14 +- 2.441015 12 11 1 12 28 TCGA-3B-A9HV-01A-11R-A39D-07 C9orf3~RP11-572M11.3 fusion "C9orf3," "RP11-572M11.3," chr9~chr3 97823092 112863182 21 +- 2.557508 16 8 8 16 32 TCGA-3B-A9HV-01A-11R-A39D-07 C9orf3~ZNF462 fusion "C9orf3," "RP11-508N12.4,ZNF462," chr9~chr9 97823092 109685635 6 ++ 1.791759 5 1 4 5 14 TCGA-3B-A9HV-01A-11R-A39D-07 CACNA2D1~Nchr7~84131654 intergenic "CACNA2D1," "-," chr7~chr7 81689744 84131654 74 -+ 3.10864 72 31 41 72 118 TCGA-3B-A9HV-01A-11R-A39D-07 CACNA2D1~Nchr7~84131654 intergenic "CACNA2D1," "-," chr7~chr7 81679487 84131654 2 -+ 0.693147 2 0 2 2 4 TCGA-3B-A9HV-01A-11R-A39D-07 CACNA2D1~Nchr7~84131654 intergenic "CACNA2D1," "-," chr7~chr7 81678843 84131654 4 -+ 1.039721 4 2 2 4 16 TCGA-3B-A9HV-01A-11R-A39D-07 CHST11~Nchr12~92910255 intergenic "CHST11," "-," chr12~chr12 104995769 92910255 4 +- 1.386294 2 2 0 2 6 TCGA-3B-A9HV-01A-11R-A39D-07 COL4A6~NchrX~107965753 intergenic "COL4A6," "-," chrX~chrX 107531120 107965753 6 +- 1.791759 5 3 2 5 12 TCGA-3B-A9HV-01A-11R-A39D-07 DOCK3~CSNK1A1 fusion "DOCK3," "CSNK1A1," chr3~chr5 50816189 148904734 7 +- 1.747868 7 0 7 7 8 TCGA-3B-A9HV-01A-11R-A39D-07 DOCK3~CSNK1A1 fusion "DOCK3," "CSNK1A1," chr3~chr5 50816189 148929744 2 +- 0.693147 2 0 2 2 8 TCGA-3B-A9HV-01A-11R-A39D-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 3 +- 1.098612 3 2 1 3 4 TCGA-3B-A9HV-01A-11R-A39D-07 ENO1~Nchr1~236648065 intergenic "ENO1," "-," chr1~chr1 8921245 236648065 4 -- 1.386294 4 3 1 4 140 TCGA-3B-A9HV-01A-11R-A39D-07 ETV1~CACNA2D1 fusion "ETV1," "CACNA2D1," chr7~chr7 14017052 81695840 42 -- 2.961682 34 22 12 34 140 TCGA-3B-A9HV-01A-11R-A39D-07 FAM172A~Nchr5~92526872 intergenic "FAM172A," "-," chr5~chr5 93386436 92526872 2 -- 0.693147 2 2 0 2 8 TCGA-3B-A9HV-01A-11R-A39D-07 GABBR2~Nchr9~115863402 intergenic "GABBR2," "-," chr9~chr9 101124997 115863402 7 -+ 1.94591 6 4 2 6 22 TCGA-3B-A9HV-01A-11R-A39D-07 INO80C~Nchr2~117566452 intergenic "INO80C," "-," chr18~chr2 33058246 117566452 8 -+ 1.559581 8 5 3 8 22 TCGA-3B-A9HV-01A-11R-A39D-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 168 -+ 2.716403 74 0 74 74 74 TCGA-3B-A9HV-01A-11R-A39D-07 Nchr12~24366277~SOX5 intergenic "-," "SOX5," chr12~chr12 24366277 24048958 2 -- 0.693147 2 2 0 2 2 TCGA-3B-A9HV-01A-11R-A39D-07 Nchr12~46578901~Nchr12~46579039 intergenic "-," "-," chr12~chr12 46578901 46579039 2 -- 0.693147 2 1 1 2 2 TCGA-3B-A9HV-01A-11R-A39D-07 Nchr12~95267416~TMCC3 intergenic "-," "TMCC3," chr12~chr12 95267416 94976314 4 -- 1.039721 4 4 0 4 2 TCGA-3B-A9HV-01A-11R-A39D-07 Nchr13~48794207~Nchr17~78379099 intergenic "-," "-," chr13~chr17 48794207 78379099 3 -+ 1.098612 3 1 2 3 2 TCGA-3B-A9HV-01A-11R-A39D-07 Nchr13~48794535~Nchr17~78379099 intergenic "-," "-," chr13~chr17 48794535 78379099 3 -+ 1.098612 1 0 1 1 2 TCGA-3B-A9HV-01A-11R-A39D-07 Nchr14~45267133~Nchr14~44862941 intergenic "-," "-," chr14~chr14 45267133 44862941 5 -- 1.332179 4 3 1 4 18 TCGA-3B-A9HV-01A-11R-A39D-07 Nchr16~15794588~Nchr16~15794812 intergenic "-," "-," chr16~chr16 15794588 15794812 7 -- 1.747868 4 0 4 4 4 TCGA-3B-A9HV-01A-11R-A39D-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 2 ++ 0.693147 2 0 2 2 4 TCGA-3B-A9HV-01A-11R-A39D-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 3 ++ 1.098612 2 1 1 2 6 TCGA-3B-A9HV-01A-11R-A39D-07 Nchr18~24283356~KCTD1 intergenic "-," "KCTD1," chr18~chr18 24283356 24081214 21 -- 2.42548 21 14 7 21 58 TCGA-3B-A9HV-01A-11R-A39D-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 5 ++ 1.332179 2 1 1 2 8 TCGA-3B-A9HV-01A-11R-A39D-07 Nchr2~139258325~Nchr2~139057107 intergenic "-," "-," chr2~chr2 139258325 139057107 3 -- 0.636514 1 1 0 1 6 TCGA-3B-A9HV-01A-11R-A39D-07 Nchr2~177065789~Nchr2~177065905 intergenic "-," "-," chr2~chr2 177065789 177065905 2 -- 0.693147 2 0 2 2 2 TCGA-3B-A9HV-01A-11R-A39D-07 Nchr2~177065789~Nchr2~177065913 intergenic "-," "-," chr2~chr2 177065789 177065913 3 -- 0.636514 3 0 3 3 2 TCGA-3B-A9HV-01A-11R-A39D-07 Nchr3~100895863~ABI3BP intergenic "-," "ABI3BP," chr3~chr3 100895863 100645325 6 -- 1.791759 4 0 4 4 96 TCGA-3B-A9HV-01A-11R-A39D-07 Nchr3~100913972~ABI3BP intergenic "-," "ABI3BP," chr3~chr3 100913972 100621530 2 -- 0.693147 2 1 1 2 30 TCGA-3B-A9HV-01A-11R-A39D-07 Nchr3~100913972~ABI3BP intergenic "-," "ABI3BP," chr3~chr3 100913972 100645325 8 -- 1.320888 8 2 6 8 96 TCGA-3B-A9HV-01A-11R-A39D-07 Nchr4~24473998~PPARGC1A intergenic "-," "PPARGC1A," chr4~chr4 24473998 23886554 3 -- 1.098612 3 0 3 3 8 TCGA-3B-A9HV-01A-11R-A39D-07 Nchr5~166500361~Nchr5~166711769 intergenic "-," "-," chr5~chr5 166500361 166711769 6 ++ 1.011404 4 1 3 4 6 TCGA-3B-A9HV-01A-11R-A39D-07 Nchr7~48964750~Nchr9~91355653 intergenic "-," "-," chr7~chr9 48964750 91355653 19 ++ 2.506662 11 0 11 11 12 TCGA-3B-A9HV-01A-11R-A39D-07 Nchr7~84144216~CACNA2D1 intergenic "-," "CACNA2D1," chr7~chr7 84144216 81700827 5 -+ 1.609438 4 2 2 4 10 TCGA-3B-A9HV-01A-11R-A39D-07 ODZ2~Nchr5~167148357 intergenic "ODZ2," "-," chr5~chr5 166802478 167148357 3 ++ 1.098612 3 1 2 3 12 TCGA-3B-A9HV-01A-11R-A39D-07 PCBP2~Nchr8~75515723 intergenic "PCBP2," "-," chr12~chr8 53861589 75515723 2 -+ 0.693147 1 1 0 1 8 TCGA-3B-A9HV-01A-11R-A39D-07 PHLPP1~Nchr18~66321713 intergenic "PHLPP1," "-," chr18~chr18 60612504 66321713 33 ++ 2.548799 32 15 17 32 100 TCGA-3B-A9HV-01A-11R-A39D-07 PLCXD2~Nchr9~91555515 intergenic "PLCXD2," "-," chr3~chr9 111483016 91555515 4 -- 1.386294 4 3 1 4 8 TCGA-3B-A9HV-01A-11R-A39D-07 RBMS3~Nchr3~31511021 intergenic "RBMS3," "-," chr3~chr3 29804480 31511021 4 ++ 1.386294 3 0 3 3 12 TCGA-3B-A9HV-01A-11R-A39D-07 RCBTB2~MED4 fusion "RCBTB2," "MED4," chr13~chr13 49107164 48664554 3 -- 1.098612 3 3 0 3 4 TCGA-3B-A9HV-01A-11R-A39D-07 RNF165~PHLPP1 fusion "RNF165," "PHLPP1," chr18~chr18 43914298 60608951 21 ++ 2.265239 21 1 20 21 72 TCGA-3B-A9HV-01A-11R-A39D-07 RP1-209A6.1~Nchr6~22745302 intergenic "RP1-209A6.1," "-," chr6~chr6 23175482 22745302 4 -- 1.386294 3 1 2 3 4 TCGA-3B-A9HV-01A-11R-A39D-07 RP11-123O10.4~GRIP1 fusion "RP11-123O10.4," "GRIP1," chr12~chr12 67462830 66990707 7 -- 1.747868 6 2 4 6 8 TCGA-3B-A9HV-01A-11R-A39D-07 RP11-335L9.1~Nchr3~177483365 intergenic "RP11-335L9.1," "-," chr3~chr3 177159898 177483365 2 ++ 0.693147 2 1 1 2 10 TCGA-3B-A9HV-01A-11R-A39D-07 RP11-335L9.1~RP11-91K9.1 fusion "RP11-335L9.1," "RP11-91K9.1," chr3~chr3 177159898 177613401 5 ++ 1.332179 5 1 4 5 2 TCGA-3B-A9HV-01A-11R-A39D-07 TMEM35~SLC25A43 fusion "TMEM35," "SLC25A43," chrX~chrX 100334111 118585972 4 ++ 0.562335 4 3 1 4 4 TCGA-3B-A9HV-01A-11R-A39D-07 TPM2~CNTROB fusion "TPM2," "CNTROB," chr9~chr17 35685061 7852703 3 -+ 1.098612 3 0 3 3 10 TCGA-3B-A9HV-01A-11R-A39D-07 TPM2~MYH11 fusion "TPM2," "MYH11," chr9~chr16 35689701 15808896 5 -- 0.950271 5 0 5 5 4 TCGA-3B-A9HV-01A-11R-A39D-07 TPT1~Nchr6~144522012 intergenic "TPT1," "-," chr13~chr6 45914301 144522012 29 -- 0.250955 27 27 0 27 52 TCGA-3B-A9HV-01A-11R-A39D-07 ZBTB38~Nchr9~90097866 intergenic "ZBTB38," "-," chr3~chr9 141122873 90097866 10 ++ 2.025326 9 7 2 9 48 TCGA-3B-A9HV-01A-11R-A39D-07 ZNF462~Nchr3~111403172 intergenic "ZNF462," "-," chr9~chr3 109701388 111403172 21 +- 1.831354 21 10 11 21 92 TCGA-3B-A9HV-01A-11R-A39D-07 ZNF462~ZBED2 fusion "ZNF462," "ZBED2," chr9~chr3 109701388 111313913 14 +- 2.441015 13 7 6 13 26 TCGA-3B-A9HX-01A-11R-A39D-07 ANO8~Nchr19~42920781 intergenic "ANO8," "-," chr19~chr19 17440934 42920781 4 -+ 1.386294 4 3 1 4 4 TCGA-3B-A9HX-01A-11R-A39D-07 ARHGEF18~Nchr19~12682385 intergenic "ARHGEF18," "-," chr19~chr19 7460133 12682385 4 ++ 1.386294 4 0 4 4 30 TCGA-3B-A9HX-01A-11R-A39D-07 ARHGEF18~Nchr19~12682554 intergenic "ARHGEF18," "-," chr19~chr19 7460133 12682554 3 ++ 1.098612 2 0 2 2 12 TCGA-3B-A9HX-01A-11R-A39D-07 BDKRB2~Nchr14~96735639 intergenic "BDKRB2," "-," chr14~chr14 96671217 96735639 17 -- 0.885289 17 8 9 17 2 TCGA-3B-A9HX-01A-11R-A39D-07 CCDC97~C19orf44 fusion "CCDC97," "C19orf44," chr19~chr19 41828562 16623825 6 ++ 1.56071 6 5 1 6 10 TCGA-3B-A9HX-01A-11R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266264 189856240 3 -+ 1.098612 2 2 0 2 4 TCGA-3B-A9HX-01A-11R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266738 189859032 7 -+ 1.153742 5 5 0 5 4 TCGA-3B-A9HX-01A-11R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48273540 189862062 4 -+ 1.039721 4 3 1 4 2 TCGA-3B-A9HX-01A-11R-A39D-07 COL1A1~GAPDH fusion "COL1A1," "GAPDH," chr17~chr12 48271384 6647005 8 -+ 0.974315 8 1 7 8 2 TCGA-3B-A9HX-01A-11R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94051229 48267414 6 +- 1.011404 5 0 5 5 6 TCGA-3B-A9HX-01A-11R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049717 48269239 2 +- 0.693147 2 1 1 2 2 TCGA-3B-A9HX-01A-11R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48270211 2 +- 0.693147 1 0 1 1 4 TCGA-3B-A9HX-01A-11R-A39D-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189861222 94048810 15 ++ 0.485094 14 14 0 14 10 TCGA-3B-A9HX-01A-11R-A39D-07 CPD~Nchr17~34272246 intergenic "CPD," "-," chr17~chr17 28712254 34272246 11 ++ 2.369382 9 5 3 9 98 TCGA-3B-A9HX-01A-11R-A39D-07 CPD~Nchr17~34288573 intergenic "CPD," "-," chr17~chr17 28712254 34288573 19 ++ 2.360736 18 11 7 18 72 TCGA-3B-A9HX-01A-11R-A39D-07 CPD~Nchr17~34298830 intergenic "CPD," "-," chr17~chr17 28712254 34298830 6 ++ 1.747868 6 3 2 6 34 TCGA-3B-A9HX-01A-11R-A39D-07 EGLN3~Nchr13~113296069 intergenic "EGLN3," "-," chr14~chr13 34419602 113296069 29 -- 2.584401 22 13 9 22 66 TCGA-3B-A9HX-01A-11R-A39D-07 EGLN3~Nchr13~113296069 intergenic "EGLN3," "-," chr14~chr13 34419884 113296069 11 -- 2.271869 9 4 5 9 10 TCGA-3B-A9HX-01A-11R-A39D-07 FHL2~Nchr11~67526262 intergenic "FHL2," "-," chr2~chr11 106002818 67526262 8 -+ 1.906155 8 3 5 8 22 TCGA-3B-A9HX-01A-11R-A39D-07 FRMPD4~NchrX~12359660 intergenic "FRMPD4," "-," chrX~chrX 12157131 12359660 9 ++ 1.889159 8 5 3 8 14 TCGA-3B-A9HX-01A-11R-A39D-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 43 -- 2.05589 42 42 0 42 24 TCGA-3B-A9HX-01A-11R-A39D-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 419 -- 2.588324 220 61 159 220 2 TCGA-3B-A9HX-01A-11R-A39D-07 HNRNPM~AC022415.1 fusion "HNRNPM," "AC022415.1," chr19~chr19 8520458 12221449 8 ++ 1.667462 8 6 2 8 16 TCGA-3B-A9HX-01A-11R-A39D-07 HNRNPM~ZNF788 fusion "HNRNPM," "ZNF788,AC022415.1," chr19~chr19 8520458 12221120 9 ++ 1.889159 9 5 4 9 52 TCGA-3B-A9HX-01A-11R-A39D-07 HNRNPM~ZNF788 fusion "HNRNPM," "ZNF788,AC022415.1," chr19~chr19 8509995 12221120 4 ++ 1.386294 4 2 2 4 20 TCGA-3B-A9HX-01A-11R-A39D-07 HNRNPM~ZNF788 fusion "HNRNPM," "AC022415.1,ZNF788," chr19~chr19 8520458 12222061 4 ++ 1.386294 4 2 2 4 18 TCGA-3B-A9HX-01A-11R-A39D-07 LSM4~AD001527.1 fusion "LSM4," "AD001527.1," chr19~chr19 18433828 36602271 41 -+ 2.687866 41 0 41 41 102 TCGA-3B-A9HX-01A-11R-A39D-07 LSM4~Nchr19~36600141 intergenic "LSM4," "-," chr19~chr19 18433828 36600141 3 -+ 1.098612 3 0 3 3 366 TCGA-3B-A9HX-01A-11R-A39D-07 LSM4~Nchr19~36602031 intergenic "LSM4," "-," chr19~chr19 18433828 36602031 549 -+ 2.931989 572 5 525 572 346 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 103 -+ 2.259625 51 0 51 51 80 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr13~113277442~AFF2 intergenic "-," "AFF2," chr13~chrX 113277442 147762685 3 -- 0.636514 3 1 2 3 4 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr13~45915765~Nchr2~146655794 intergenic "-," "-," chr13~chr2 45915765 146655794 4 ++ 1.386294 1 1 0 1 10 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr13~76509067~Nchr13~76841631 intergenic "-," "-," chr13~chr13 76509067 76841631 3 ++ 0.636514 3 3 0 3 8 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr13~76509067~Nchr13~76846031 intergenic "-," "-," chr13~chr13 76509067 76846031 7 ++ 1.94591 7 3 4 7 12 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr13~76509067~Nchr13~76908096 intergenic "-," "-," chr13~chr13 76509067 76908096 5 ++ 1.609438 5 3 2 5 10 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr15~37712261~Nchr15~37511021 intergenic "-," "-," chr15~chr15 37712261 37511021 2 -- 0.693147 2 0 2 2 6 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr15~38133618~Nchr15~37712386 intergenic "-," "-," chr15~chr15 38133618 37712386 10 -- 2.025326 10 5 5 10 8 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr16~79619777~Nchr16~79246798 intergenic "-," "-," chr16~chr16 79619777 79246798 7 -- 1.94591 7 4 3 7 26 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 3 ++ 0.636514 3 1 2 3 8 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 5 ++ 1.609438 4 0 4 4 22 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr16~85404884~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85404884 85682158 2 ++ 0.693147 2 2 0 2 6 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr19~20655992~Nchr19~30816134 intergenic "-," "-," chr19~chr19 20655992 30816134 15 +- 2.303488 15 3 12 15 30 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr19~20657098~Nchr19~30816134 intergenic "-," "-," chr19~chr19 20657098 30816134 3 +- 1.098612 3 1 2 3 10 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr19~30078966~ZNF444 intergenic "-," "ZNF444," chr19~chr19 30078966 56653363 7 -- 1.747868 7 0 7 7 14 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr19~42927571~ANO8 intergenic "-," "ANO8," chr19~chr19 42927571 17441736 10 -+ 1.886697 10 5 5 10 34 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr19~53708333~ZNF649 intergenic "-," "ZNF649," chr19~chr19 53708333 52403547 4 +- 1.386294 3 1 2 3 6 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr19~7448089~Nchr19~12682385 intergenic "-," "-," chr19~chr19 7448089 12682385 2 ++ 0.693147 2 1 1 2 32 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr19~7448089~Nchr19~12682554 intergenic "-," "-," chr19~chr19 7448089 12682554 9 ++ 1.889159 9 5 4 9 20 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr19~9896602~Nchr19~9815662 intergenic "-," "-," chr19~chr19 9896602 9815662 4 -+ 1.386294 4 3 1 4 12 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr19~9896614~Nchr19~9815662 intergenic "-," "-," chr19~chr19 9896614 9815662 4 -+ 1.386294 3 2 1 3 12 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr19~9896614~Nchr19~9820434 intergenic "-," "-," chr19~chr19 9896614 9820434 5 -+ 1.332179 5 4 1 5 6 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 7 -+ 1.732868 7 4 2 7 70 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr2~56397330~CCDC85A intergenic "-," "CCDC85A," chr2~chr2 56397330 56611401 2 ++ 0.693147 2 1 1 2 8 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr3~116161389~LSAMP intergenic "-," "LSAMP," chr3~chr3 116161389 115805403 3 -- 1.098612 3 2 1 3 2 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr3~161318517~Nchr3~161922525 intergenic "-," "-," chr3~chr3 161318517 161922525 3 ++ 1.098612 2 2 0 2 2 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr5~113441478~Nchr5~113696642 intergenic "-," "-," chr5~chr5 113441478 113696642 3 ++ 1.098612 3 2 1 3 6 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr6~82767656~RP11-379B8.1 intergenic "-," "RP11-379B8.1," chr6~chr6 82767656 82555626 12 -- 2.210254 10 3 7 10 12 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr7~9999870~AC060834.3 intergenic "-," "AC060834.3," chr7~chr7 9999870 9799692 2 -- 0.693147 1 1 0 1 8 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr8~111431152~RP11-238I10.1 intergenic "-," "RP11-238I10.1," chr8~chr8 111431152 111639595 4 ++ 1.039721 3 3 0 3 2 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr9~14531945~NFIB intergenic "-," "NFIB," chr9~chr9 14531945 14307519 6 -- 1.56071 6 3 3 6 42 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr9~14531945~RP11-120J1.1 intergenic "-," "RP11-120J1.1," chr9~chr9 14531945 14322993 2 -- 0.693147 2 1 1 2 4 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr9~28947816~LINGO2 intergenic "-," "LINGO2," chr9~chr9 28947816 28670278 16 -- 2.339372 5 2 3 5 4 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr9~29212088~Nchr9~28947912 intergenic "-," "-," chr9~chr9 29212088 28947912 9 -- 2.043192 1 0 1 1 8 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr9~29212920~Nchr9~28947912 intergenic "-," "-," chr9~chr9 29212920 28947912 10 -- 2.025326 5 0 5 5 4 TCGA-3B-A9HX-01A-11R-A39D-07 Nchr9~38406966~Nchr9~38407087 intergenic "-," "-," chr9~chr9 38406966 38407087 2 -- 0.693147 2 0 2 2 2 TCGA-3B-A9HX-01A-11R-A39D-07 PIAS4~ZNF787 fusion "PIAS4," "ZNF787," chr19~chr19 4033578 56614596 127 +- 3.104405 129 72 48 129 146 TCGA-3B-A9HX-01A-11R-A39D-07 RAD51L1~NchrX~108013520 intergenic "RAD51L1," "-," chr14~chrX 68934967 108013520 17 +- 2.476247 9 5 4 9 8 TCGA-3B-A9HX-01A-11R-A39D-07 RP11-553A10.1~Nchr3~110359553 intergenic "RP11-553A10.1," "-," chr3~chr3 110611237 110359553 2 -- 0.693147 2 0 2 2 22 TCGA-3B-A9HX-01A-11R-A39D-07 SIN3B~TBC1D17 fusion "SIN3B," "TBC1D17," chr19~chr19 16987389 50382383 3 ++ 1.098612 3 2 1 3 8 TCGA-3B-A9HX-01A-11R-A39D-07 SIN3B~TBC1D17 fusion "SIN3B," "TBC1D17," chr19~chr19 16987389 50382387 2 ++ 0.693147 2 1 1 2 8 TCGA-3B-A9HX-01A-11R-A39D-07 SIN3B~TBC1D17 fusion "SIN3B," "TBC1D17," chr19~chr19 16987389 50382580 2 ++ 0.693147 2 2 0 2 148 TCGA-3B-A9HX-01A-11R-A39D-07 SIN3B~TBC1D17 fusion "SIN3B," "TBC1D17," chr19~chr19 16987389 50382663 4 ++ 1.386294 4 1 3 4 198 TCGA-3B-A9HX-01A-11R-A39D-07 SIN3B~TBC1D17 fusion "SIN3B," "TBC1D17," chr19~chr19 16987389 50383536 57 ++ 2.797299 56 22 34 56 206 TCGA-3B-A9HX-01A-11R-A39D-07 SVIL~Nchr10~29717471 intergenic "SVIL," "-," chr10~chr10 29975482 29717471 7 -- 1.153742 6 5 1 6 4 TCGA-3B-A9HX-01A-11R-A39D-07 TGFB1~CCDC97 fusion "TGFB1," "CCDC97," chr19~chr19 41838033 41822289 9 -+ 1.889159 9 4 5 9 22 TCGA-3B-A9HX-01A-11R-A39D-07 TPM4~IGFL2 fusion "TPM4," "IGFL2," chr19~chr19 16178548 46663672 55 ++ 2.895288 54 27 27 54 166 TCGA-3B-A9HX-01A-11R-A39D-07 ZC3H4~KANK3 fusion "ZC3H4," "KANK3," chr19~chr19 47615681 8389980 2 -- 0.693147 2 2 0 2 6 TCGA-3B-A9HX-01A-11R-A39D-07 ZC3H4~KANK3 fusion "ZC3H4," "KANK3," chr19~chr19 47614152 8389980 12 -- 2.094729 12 6 6 12 14 TCGA-3B-A9HX-01A-11R-A39D-07 ZC3H4~Nchr19~49038805 intergenic "ZC3H4," "-," chr19~chr19 47614152 49038805 6 -+ 1.242453 5 4 1 5 2 TCGA-3B-A9HX-01A-11R-A39D-07 ZNF146~Nchr19~53421184 intergenic "ZNF146," "-," chr19~chr19 36706098 53421184 8 +- 1.906155 6 0 6 6 16 TCGA-3B-A9HX-01A-11R-A39D-07 ZNF17~GRLF1 fusion "ZNF17," "GRLF1," chr19~chr19 57922774 47491246 3 ++ 1.098612 2 0 2 2 2 TCGA-3B-A9HX-01A-11R-A39D-07 ZNF235~Nchr19~22638986 intergenic "ZNF235," "-," chr19~chr19 44802961 22638986 12 -+ 2.253858 12 4 8 12 62 TCGA-3B-A9HX-01A-11R-A39D-07 ZNF235~Nchr19~22638986 intergenic "ZNF235," "-," chr19~chr19 44802973 22638986 21 -+ 1.999802 21 6 15 21 58 TCGA-3B-A9HX-01A-11R-A39D-07 ZNF254~Nchr19~22886632 intergenic "ZNF254," "-," chr19~chr19 24216423 22886632 4 +- 1.039721 4 1 3 4 70 TCGA-3B-A9HX-01A-11R-A39D-07 ZNF254~Nchr19~22886806 intergenic "ZNF254," "-," chr19~chr19 24216423 22886806 66 +- 2.984761 65 25 38 65 110 TCGA-3B-A9HX-01A-11R-A39D-07 ZNF416~ACTN4 fusion "ZNF416," "ACTN4," chr19~chr19 58089425 39191240 4 -+ 1.386294 4 4 0 4 20 TCGA-3B-A9HX-01A-11R-A39D-07 ZNF430~Nchr19~398830 intergenic "ZNF430," "-," chr19~chr19 21205687 398830 92 ++ 2.923269 90 63 27 90 482 TCGA-3B-A9HX-01A-11R-A39D-07 ZNF430~Nchr19~398833 intergenic "ZNF430," "-," chr19~chr19 21205687 398833 4 ++ 1.039721 4 3 1 4 444 TCGA-3B-A9HX-01A-11R-A39D-07 ZNF431~SIGLEC6 fusion "ZNF431," "SIGLEC6," chr19~chr19 21326446 52034773 9 +- 1.581094 9 9 0 9 16 TCGA-3B-A9HX-01A-11R-A39D-07 ZNF43~Nchr19~14380245 intergenic "ZNF43," "-," chr19~chr19 22025947 14380245 5 -- 1.609438 4 2 2 4 2 TCGA-3B-A9HX-01A-11R-A39D-07 ZNF43~Nchr19~14380245 intergenic "ZNF43," "-," chr19~chr19 22018838 14380245 18 -- 2.428274 15 10 5 15 40 TCGA-3B-A9HX-01A-11R-A39D-07 ZNF493~Nchr19~19810095 intergenic "ZNF493," "-," chr19~chr19 21580069 19810095 2 ++ 0.693147 2 1 1 2 10 TCGA-3B-A9HX-01A-11R-A39D-07 ZNF569~A1BG fusion "ZNF569," "ZNF497,A1BG," chr19~chr19 37935809 58869015 4 -- 1.039721 4 1 3 4 6 TCGA-3B-A9HX-01A-11R-A39D-07 ZNF569~A1BG fusion "ZNF569," "A1BG,ZNF497," chr19~chr19 37935809 58869951 8 -- 1.732868 5 3 2 5 14 TCGA-3B-A9HX-01A-11R-A39D-07 ZNF569~A1BG fusion "ZNF569," "A1BG," chr19~chr19 37935809 58870689 2 -- 0.693147 2 0 2 2 26 TCGA-3B-A9HX-01A-11R-A39D-07 ZNF709~Nchr19~31621351 intergenic "ZNF709," "-," chr19~chr19 12595469 31621351 2 -- 0.693147 2 0 2 2 8 TCGA-3B-A9HX-01A-11R-A39D-07 ZNF709~Nchr19~31622839 intergenic "ZNF709," "-," chr19~chr19 12595469 31622839 8 -- 1.732868 7 0 7 7 28 TCGA-3B-A9HX-01A-11R-A39D-07 ZNF709~Nchr19~31623597 intergenic "ZNF709," "-," chr19~chr19 12595469 31623597 5 -- 1.609438 5 3 2 5 6 TCGA-3B-A9HX-01A-11R-A39D-07 ZNF799~C19orf75 fusion "ZNF799," "C19orf75," chr19~chr19 12511882 51767137 3 -+ 1.098612 3 2 1 3 4 TCGA-3B-A9HU-01A-11R-A39D-07 BGN~NchrX~152751232 intergenic "BGN," "-," chrX~chrX 152770733 152751232 2 -+ 0.693147 2 1 1 2 10 TCGA-3B-A9HU-01A-11R-A39D-07 GALNT10~SAP30L fusion "GALNT10," "SAP30L," chr5~chr5 153570585 153832962 4 ++ 1.386294 4 0 4 4 18 TCGA-3B-A9HU-01A-11R-A39D-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 370 -- 2.427912 369 368 1 369 262 TCGA-3B-A9HU-01A-11R-A39D-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32487941 32548633 270 -- 2.441698 56 3 53 56 8 TCGA-3B-A9HU-01A-11R-A39D-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489818 32552111 5 -- 1.05492 2 0 2 2 422 TCGA-3B-A9HU-01A-11R-A39D-07 IGHV4-28~IGHG1 fusion "IGHV4-28," "IGHG1," chr14~chr14 106780731 106209407 3 -- 1.098612 3 3 0 3 36 TCGA-3B-A9HU-01A-11R-A39D-07 IGKV1-27~AC096579.7 fusion "IGKV1-27," "IGKC,AC096579.7," chr2~chr2 89513328 89157196 4 -- 1.039721 4 4 0 4 262 TCGA-3B-A9HU-01A-11R-A39D-07 IGKV4-1~AC096579.7 fusion "IGKV4-1," "IGKC,AC096579.7," chr2~chr2 89185136 89157196 5 +- 1.332179 5 5 0 5 54 TCGA-3B-A9HU-01A-11R-A39D-07 IGKV5-2~AC096579.7 fusion "IGKV5-2," "IGKC,AC096579.7," chr2~chr2 89197212 89157196 2 +- 0.693147 2 0 2 2 2 TCGA-3B-A9HU-01A-11R-A39D-07 IGKV5-2~AC096579.7 fusion "IGKV5-2," "IGKC,AC096579.7," chr2~chr2 89196859 89157196 2 +- 0.693147 2 2 0 2 8 TCGA-3B-A9HU-01A-11R-A39D-07 IGLV1-51~IGLJ3 fusion "IGLV1-51," "IGLJ3," chr22~chr22 22677320 23247166 31 ++ 2.09062 31 0 30 31 1584 TCGA-3B-A9HU-01A-11R-A39D-07 IGLV6-57~IGLJ3 fusion "IGLV6-57," "IGLJ3," chr22~chr22 22550672 23247164 3 ++ 1.386294 4 2 1 4 428 TCGA-3B-A9HU-01A-11R-A39D-07 NCOA7~Nchr6~126398384 intergenic "NCOA7," "-," chr6~chr6 126136550 126398384 30 ++ 2.684722 31 16 14 31 48 TCGA-3B-A9HU-01A-11R-A39D-07 NCOA7~Nchr6~126398515 intergenic "NCOA7," "-," chr6~chr6 126136550 126398515 13 ++ 2.138397 13 4 9 13 22 TCGA-3B-A9HU-01A-11R-A39D-07 NCOA7~Nchr6~126432365 intergenic "NCOA7," "-," chr6~chr6 126136550 126432365 2 ++ 0.693147 2 2 0 2 2 TCGA-3B-A9HU-01A-11R-A39D-07 NCOA7~Nchr6~126434012 intergenic "NCOA7," "-," chr6~chr6 126136550 126434012 17 ++ 2.15006 14 1 13 14 32 TCGA-3B-A9HU-01A-11R-A39D-07 NCOA7~Nchr6~126451803 intergenic "NCOA7," "-," chr6~chr6 126136550 126451803 4 ++ 1.039721 4 0 4 4 26 TCGA-3B-A9HU-01A-11R-A39D-07 NCOA7~Nchr6~126495971 intergenic "NCOA7," "-," chr6~chr6 126136550 126495971 25 ++ 2.730633 19 10 9 19 40 TCGA-3B-A9HU-01A-11R-A39D-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 173 -+ 2.507141 75 0 73 75 114 TCGA-3B-A9HU-01A-11R-A39D-07 Nchr14~90085372~FOXN3 intergenic "-," "FOXN3," chr14~chr14 90085372 89878834 3 -- 1.098612 3 3 0 3 14 TCGA-3B-A9HU-01A-11R-A39D-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 22 -+ 2.378475 21 11 9 21 168 TCGA-3B-A9HU-01A-11R-A39D-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145013721 2 -+ 0.693147 2 0 2 2 2 TCGA-3B-A9HU-01A-11R-A39D-07 Nchr2~139258325~Nchr2~139057107 intergenic "-," "-," chr2~chr2 139258325 139057107 3 -- 0.636514 1 1 0 1 4 TCGA-3B-A9HU-01A-11R-A39D-07 Nchr2~177065788~Nchr2~177065931 intergenic "-," "-," chr2~chr2 177065788 177065931 3 -- 1.098612 2 0 2 2 16 TCGA-3B-A9HU-01A-11R-A39D-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40768381 14 ++ 2.044931 9 0 9 9 30 TCGA-3B-A9HU-01A-11R-A39D-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 292 ++ 2.980878 56 7 49 56 26 TCGA-3B-A9HU-01A-11R-A39D-07 Nchr9~17906920~Nchr9~18163860 intergenic "-," "-," chr9~chr9 17906920 18163860 4 ++ 1.039721 4 3 1 4 8 TCGA-3B-A9HU-01A-11R-A39D-07 NchrX~23288168~NchrX~23082238 intergenic "-," "-," chrX~chrX 23288168 23082238 14 -- 2.341994 7 2 5 7 18 TCGA-3B-A9HU-01A-11R-A39D-07 NchrX~23351394~NchrX~23082238 intergenic "-," "-," chrX~chrX 23351394 23082238 9 -- 1.735126 4 1 3 4 4 TCGA-3B-A9HU-01A-11R-A39D-07 RABEP1~RP1-37C10.3 fusion "RABEP1," "RP1-37C10.3," chr17~chr1 5185815 17331138 16 ++ 2.426015 15 9 6 15 24 TCGA-3B-A9HU-01A-11R-A39D-07 RP11-335L9.1~Nchr3~177483365 intergenic "RP11-335L9.1," "-," chr3~chr3 177257281 177483365 4 ++ 1.039721 2 2 0 2 6 TCGA-3B-A9HU-01A-11R-A39D-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 4 ++ 1.039721 3 1 2 3 2 TCGA-3B-A9HU-01A-11R-A39D-07 TMEM106A~Nchr17~41400158 intergenic "TMEM106A," "-," chr17~chr17 41369331 41400158 6 +- 1.56071 5 3 2 5 4 TCGA-3B-A9HU-01A-11R-A39D-07 ZNF141~ZNF718 fusion "ZNF141," "ZNF718," chr4~chr4 338219 154702 3 ++ 1.098612 1 1 0 1 6 TCGA-3B-A9HT-01A-11R-A39D-07 C1orf196~KAZN fusion "C1orf196," "KAZN," chr1~chr1 14507087 14925479 2 ++ 0.693147 2 1 1 2 8 TCGA-3B-A9HT-01A-11R-A39D-07 FAM46A~Nchr6~82155777 intergenic "FAM46A," "-," chr6~chr6 82461307 82155777 2 -- 0.693147 2 2 0 2 2 TCGA-3B-A9HT-01A-11R-A39D-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31237270 31322303 2 -- 0.693147 1 0 1 1 28 TCGA-3B-A9HT-01A-11R-A39D-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31237288 31323000 13 -- 0.898137 13 11 2 13 10 TCGA-3B-A9HT-01A-11R-A39D-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 98 -- 2.140018 98 96 2 98 36 TCGA-3B-A9HT-01A-11R-A39D-07 HLA-C~Nchr6~31349854 intergenic "HLA-C," "-," chr6~chr6 31236853 31349854 2 -- 0.693147 2 1 1 2 40 TCGA-3B-A9HT-01A-11R-A39D-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 262 -- 2.094719 273 0 262 273 78 TCGA-3B-A9HT-01A-11R-A39D-07 IGHV3-48~IGHG1 fusion "IGHV3-48," "IGHG1," chr14~chr14 106994222 106209407 5 -- 1.332179 5 0 5 5 8 TCGA-3B-A9HT-01A-11R-A39D-07 IGKV4-1~AC096579.7 fusion "IGKV4-1," "IGKC,AC096579.7," chr2~chr2 89185136 89157196 2 +- 0.693147 2 2 0 2 168 TCGA-3B-A9HT-01A-11R-A39D-07 IGLV1-51~IGLJ2 fusion "IGLV1-51," "IGLJ2," chr22~chr22 22677320 23241796 167 ++ 2.016319 230 2 153 230 170 TCGA-3B-A9HT-01A-11R-A39D-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 59 -+ 2.373705 27 0 27 27 58 TCGA-3B-A9HT-01A-11R-A39D-07 Nchr16~79619777~Nchr16~79246798 intergenic "-," "-," chr16~chr16 79619777 79246798 2 -- 0.693147 2 1 1 2 2 TCGA-3B-A9HT-01A-11R-A39D-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 8 ++ 1.732868 7 2 5 7 18 TCGA-3B-A9HT-01A-11R-A39D-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 7 ++ 1.747868 6 3 3 6 4 TCGA-3B-A9HT-01A-11R-A39D-07 Nchr17~17286991~FTL intergenic "-," "FTL," chr17~chr19 17286991 49468844 2 +- 0.693147 2 1 1 2 2 TCGA-3B-A9HT-01A-11R-A39D-07 Nchr18~37331293~Nchr18~37115579 intergenic "-," "-," chr18~chr18 37331293 37115579 3 -- 1.098612 1 0 1 1 8 TCGA-3B-A9HT-01A-11R-A39D-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 42 -+ 2.916217 41 22 19 41 156 TCGA-3B-A9HT-01A-11R-A39D-07 Nchr6~29855903~HLA-B intergenic "-," "HLA-B," chr6~chr6 29855903 31324692 3 -- 1.098612 3 0 3 3 434 TCGA-3B-A9HT-01A-11R-A39D-07 Nchr6~29894605~HLA-B intergenic "-," "HLA-B," chr6~chr6 29894605 31324531 4 -- 1.386294 4 1 3 4 128 TCGA-3B-A9HT-01A-11R-A39D-07 Nchr7~140912504~Nchr7~141137408 intergenic "-," "-," chr7~chr7 140912504 141137408 4 ++ 1.039721 2 1 1 2 4 TCGA-3B-A9HT-01A-11R-A39D-07 Nchr7~87945332~FAM129B intergenic "-," "FAM129B," chr7~chr9 87945332 130268435 2 ++ 0.693147 2 0 2 2 2 TCGA-3B-A9HT-01A-11R-A39D-07 Nchr9~33624650~Nchr9~33624745 intergenic "-," "-," chr9~chr9 33624650 33624745 3 -- 0.636514 3 3 0 3 6 TCGA-3B-A9HT-01A-11R-A39D-07 PRR16~CTD-2334D19.1 fusion "PRR16," "CTD-2334D19.1," chr5~chr5 119800340 120125649 9 ++ 1.676988 9 3 6 9 30 TCGA-3B-A9HT-01A-11R-A39D-07 RP11-93O7.5~Nchr5~123395641 intergenic "RP11-93O7.5," "-," chr5~chr5 123678723 123395641 3 -- 1.098612 3 1 2 3 4 TCGA-3B-A9HT-01A-11R-A39D-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 5 ++ 1.609438 5 3 2 5 4 TCGA-3B-A9HT-01A-11R-A39D-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 4 +- 1.039721 4 0 4 4 4 TCGA-DX-AB30-01A-11R-A39D-07 ATXN7L1~Nchr7~1234982 intergenic "ATXN7L1," "-," chr7~chr7 105516258 1234982 8 -+ 1.906155 8 7 1 8 18 TCGA-DX-AB30-01A-11R-A39D-07 C15orf57~CBX3 fusion "C15orf57," "CBX3," chr15~chr7 40854971 26241389 4 -+ 1.386294 4 3 1 4 6 TCGA-DX-AB30-01A-11R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271491 94029544 3 -+ 1.098612 2 2 0 2 8 TCGA-DX-AB30-01A-11R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272966 94034039 3 -+ 0.636514 2 2 0 2 4 TCGA-DX-AB30-01A-11R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48269836 94043206 2 -+ 0.693147 1 1 0 1 16 TCGA-DX-AB30-01A-11R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266755 94052369 3 -+ 1.098612 1 1 0 1 20 TCGA-DX-AB30-01A-11R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272610 94053739 2 -+ 0.693147 1 1 0 1 8 TCGA-DX-AB30-01A-11R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272408 94055062 3 -+ 1.098612 3 1 2 3 6 TCGA-DX-AB30-01A-11R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266264 189856240 3 -+ 0.636514 1 1 0 1 4 TCGA-DX-AB30-01A-11R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48271934 189858960 3 -+ 0.636514 3 2 1 3 2 TCGA-DX-AB30-01A-11R-A39D-07 COL1A2~AC004840.8 fusion "COL1A2," "AC004840.8," chr7~chr7 94050374 2424182 8 ++ 1.906155 8 7 1 8 12 TCGA-DX-AB30-01A-11R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049598 48265998 2 +- 0.693147 1 0 1 1 8 TCGA-DX-AB30-01A-11R-A39D-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94047856 189859772 2 ++ 0.693147 2 1 1 2 6 TCGA-DX-AB30-01A-11R-A39D-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94049756 189864196 5 ++ 1.332179 3 1 2 3 8 TCGA-DX-AB30-01A-11R-A39D-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94051264 189868460 7 ++ 1.549826 7 1 6 7 8 TCGA-DX-AB30-01A-11R-A39D-07 CPSF4~Nchr7~33677372 intergenic "CPSF4," "-," chr7~chr7 99037219 33677372 2 ++ 0.693147 2 1 1 2 6 TCGA-DX-AB30-01A-11R-A39D-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 2 +- 0.693147 2 2 0 2 6 TCGA-DX-AB30-01A-11R-A39D-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 58 -+ 2.601785 31 0 31 31 18 TCGA-DX-AB30-01A-11R-A39D-07 Nchr12~104659086~Nchr12~104659189 intergenic "-," "-," chr12~chr12 104659086 104659189 3 -- 1.098612 3 2 1 3 6 TCGA-DX-AB30-01A-11R-A39D-07 Nchr14~45066112~Nchr14~44862941 intergenic "-," "-," chr14~chr14 45066112 44862941 4 -- 1.039721 2 1 1 2 16 TCGA-DX-AB30-01A-11R-A39D-07 Nchr14~90085372~FOXN3 intergenic "-," "FOXN3," chr14~chr14 90085372 89878834 3 -- 1.098612 3 3 0 3 10 TCGA-DX-AB30-01A-11R-A39D-07 Nchr16~79619777~Nchr16~79246798 intergenic "-," "-," chr16~chr16 79619777 79246798 2 -- 0.693147 2 2 0 2 4 TCGA-DX-AB30-01A-11R-A39D-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 13 ++ 2.245035 12 6 6 12 28 TCGA-DX-AB30-01A-11R-A39D-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 20 ++ 2.553682 18 8 10 18 36 TCGA-DX-AB30-01A-11R-A39D-07 Nchr18~20500725~Nchr18~20284883 intergenic "-," "-," chr18~chr18 20500725 20284883 4 -- 1.386294 3 1 2 3 14 TCGA-DX-AB30-01A-11R-A39D-07 Nchr18~37115422~Nchr18~36878693 intergenic "-," "-," chr18~chr18 37115422 36878693 5 -- 1.609438 4 4 0 4 8 TCGA-DX-AB30-01A-11R-A39D-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151282 3 -- 1.098612 3 0 3 3 26 TCGA-DX-AB30-01A-11R-A39D-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 18 -- 2.50529 14 2 12 14 26 TCGA-DX-AB30-01A-11R-A39D-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 11 -+ 2.019815 10 6 4 10 168 TCGA-DX-AB30-01A-11R-A39D-07 Nchr2~122702023~Nchr2~122978395 intergenic "-," "-," chr2~chr2 122702023 122978395 4 ++ 1.386294 1 0 1 1 2 TCGA-DX-AB30-01A-11R-A39D-07 Nchr2~174398067~Nchr2~174626307 intergenic "-," "-," chr2~chr2 174398067 174626307 5 ++ 1.609438 4 1 3 4 14 TCGA-DX-AB30-01A-11R-A39D-07 Nchr2~175412205~WIPF1 intergenic "-," "WIPF1," chr2~chr2 175412205 175520726 2 ++ 0.693147 2 2 0 2 24 TCGA-DX-AB30-01A-11R-A39D-07 Nchr3~82005505~Nchr3~82234503 intergenic "-," "-," chr3~chr3 82005505 82234503 7 ++ 1.94591 7 3 4 7 12 TCGA-DX-AB30-01A-11R-A39D-07 Nchr3~82251605~Nchr3~82465271 intergenic "-," "-," chr3~chr3 82251605 82465271 4 ++ 1.039721 4 2 2 4 6 TCGA-DX-AB30-01A-11R-A39D-07 Nchr6~72490124~RIMS1 intergenic "-," "RIMS1," chr6~chr6 72490124 72806652 2 ++ 0.693147 2 0 2 2 2 TCGA-DX-AB30-01A-11R-A39D-07 Nchr6~91665147~Nchr6~91868235 intergenic "-," "-," chr6~chr6 91665147 91868235 2 ++ 0.693147 2 2 0 2 2 TCGA-DX-AB30-01A-11R-A39D-07 Nchr9~14531945~NFIB intergenic "-," "NFIB," chr9~chr9 14531945 14307519 10 -- 2.025326 10 6 4 10 20 TCGA-DX-AB30-01A-11R-A39D-07 Nchr9~31973110~Nchr9~32267638 intergenic "-," "-," chr9~chr9 31973110 32267638 4 ++ 1.386294 4 1 3 4 8 TCGA-DX-AB30-01A-11R-A39D-07 NchrX~124318557~ODZ1 intergenic "-," "ODZ1," chrX~chrX 124318557 124097666 3 -- 1.098612 3 2 1 3 28 TCGA-DX-AB30-01A-11R-A39D-07 PCOLCE2~Nchr3~174095444 intergenic "PCOLCE2," "-," chr3~chr3 142546254 174095444 2 -- 0.693147 2 2 0 2 2 TCGA-DX-AB30-01A-11R-A39D-07 RP11-123O10.4~GRIP1 fusion "RP11-123O10.4," "GRIP1," chr12~chr12 67462830 66990707 4 -- 1.039721 1 0 1 1 6 TCGA-DX-AB30-01A-11R-A39D-07 RP11-328J2.1~Nchr7~119140163 intergenic "RP11-328J2.1," "-," chr7~chr7 119353720 119140163 3 -- 1.098612 2 2 0 2 12 TCGA-DX-AB2E-01A-11R-A39D-07 AC016710.1~Nchr2~140433752 intergenic "AC016710.1," "-," chr2~chr2 140227424 140433752 6 ++ 1.56071 3 1 2 3 4 TCGA-DX-AB2E-01A-11R-A39D-07 ANGPT1~TNFRSF11B fusion "ANGPT1," "TNFRSF11B," chr8~chr8 108509490 119945539 70 -- 2.892475 70 33 36 70 154 TCGA-DX-AB2E-01A-11R-A39D-07 CMTM8~CMTM7 fusion "CMTM8," "CMTM7," chr3~chr3 32280611 32483332 3 ++ 1.098612 3 2 1 3 6 TCGA-DX-AB2E-01A-11R-A39D-07 CNTLN~Nchr9~19387616 intergenic "CNTLN," "-," chr9~chr9 17273864 19387616 6 +- 1.549826 7 3 3 7 26 TCGA-DX-AB2E-01A-11R-A39D-07 COL1A1~FN1 fusion "COL1A1," "FN1," chr17~chr2 48267690 216239964 4 -- 1.039721 3 2 1 3 4 TCGA-DX-AB2E-01A-11R-A39D-07 COL3A1~COL6A2 fusion "COL3A1," "COL6A2," chr2~chr21 189868726 47540447 3 ++ 0.636514 3 2 1 3 12 TCGA-DX-AB2E-01A-11R-A39D-07 COL6A2~COL1A1 fusion "COL6A2," "COL1A1," chr21~chr17 47544583 48264483 3 +- 1.098612 3 1 2 3 6 TCGA-DX-AB2E-01A-11R-A39D-07 COL6A2~COL6A1 fusion "COL6A2," "COL6A1," chr21~chr21 47541532 47410920 3 ++ 0.636514 2 1 1 2 12 TCGA-DX-AB2E-01A-11R-A39D-07 EIF1~Nchr17~21163258 intergenic "EIF1," "-," chr17~chr17 39847063 21163258 2 ++ 0.693147 2 0 2 2 4 TCGA-DX-AB2E-01A-11R-A39D-07 ERMP1~Nchr9~16108739 intergenic "ERMP1," "-," chr9~chr9 5825092 16108739 6 -- 1.329661 6 4 2 6 4 TCGA-DX-AB2E-01A-11R-A39D-07 FAM125A~Nchr19~35838525 intergenic "FAM125A," "-," chr19~chr19 17535486 35838525 4 +- 1.386294 4 3 1 4 14 TCGA-DX-AB2E-01A-11R-A39D-07 FN1~COL6A2 fusion "FN1," "COL6A2," chr2~chr21 216243853 47552074 2 -+ 0.693147 2 2 0 2 4 TCGA-DX-AB2E-01A-11R-A39D-07 FN1~Nchr21~47555041 intergenic "FN1," "-," chr2~chr21 216232619 47555041 2 +- 0.693147 2 1 1 2 10 TCGA-DX-AB2E-01A-11R-A39D-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31237115 31322073 2 -- 0.693147 2 0 2 2 194 TCGA-DX-AB2E-01A-11R-A39D-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 462 -- 2.076022 462 460 2 462 104 TCGA-DX-AB2E-01A-11R-A39D-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489804 32552130 2 -- 0.693147 1 0 1 1 194 TCGA-DX-AB2E-01A-11R-A39D-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 1600 -- 2.467518 772 190 575 772 2 TCGA-DX-AB2E-01A-11R-A39D-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32497902 32525963 271 -- 2.17736 40 15 25 40 4 TCGA-DX-AB2E-01A-11R-A39D-07 KATNAL1~Nchr5~40228933 intergenic "KATNAL1," "-," chr13~chr5 30881480 40228933 8 +- 1.906155 8 6 2 8 28 TCGA-DX-AB2E-01A-11R-A39D-07 KIAA1432~KDM4C fusion "KIAA1432," "KDM4C," chr9~chr9 5656690 7128066 9 ++ 2.043192 9 4 5 9 24 TCGA-DX-AB2E-01A-11R-A39D-07 KIAA1797~Nchr9~16719475 intergenic "KIAA1797," "-," chr9~chr9 20867011 16719475 23 ++ 2.340951 22 11 11 22 70 TCGA-DX-AB2E-01A-11R-A39D-07 MLLT3~BNC2 fusion "MLLT3," "BNC2," chr9~chr9 20620653 16437522 6 -- 1.791759 6 1 5 6 10 TCGA-DX-AB2E-01A-11R-A39D-07 Nchr10~77285056~C10orf11 intergenic "-," "C10orf11," chr10~chr10 77285056 77795766 2 ++ 0.693147 2 1 1 2 4 TCGA-DX-AB2E-01A-11R-A39D-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 137 -+ 2.661147 55 0 55 55 116 TCGA-DX-AB2E-01A-11R-A39D-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 3 ++ 1.098612 3 2 1 3 16 TCGA-DX-AB2E-01A-11R-A39D-07 Nchr18~2239793~Nchr18~2035148 intergenic "-," "-," chr18~chr18 2239793 2035148 4 -- 1.386294 4 2 2 4 4 TCGA-DX-AB2E-01A-11R-A39D-07 Nchr18~42793156~Nchr18~43063198 intergenic "-," "-," chr18~chr18 42793156 43063198 13 ++ 2.458311 9 7 2 9 24 TCGA-DX-AB2E-01A-11R-A39D-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 3 -+ 1.098612 3 3 0 3 274 TCGA-DX-AB2E-01A-11R-A39D-07 Nchr20~39633873~Nchr20~39345607 intergenic "-," "-," chr20~chr20 39633873 39345607 6 -- 1.56071 6 2 4 6 12 TCGA-DX-AB2E-01A-11R-A39D-07 Nchr2~122702023~Nchr2~122978395 intergenic "-," "-," chr2~chr2 122702023 122978395 3 ++ 1.098612 2 2 0 2 8 TCGA-DX-AB2E-01A-11R-A39D-07 Nchr2~194367724~Nchr2~194708314 intergenic "-," "-," chr2~chr2 194367724 194708314 2 ++ 0.693147 2 1 1 2 12 TCGA-DX-AB2E-01A-11R-A39D-07 Nchr2~81709228~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81709228 82075877 4 ++ 1.386294 2 1 1 2 26 TCGA-DX-AB2E-01A-11R-A39D-07 Nchr2~81775871~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81775871 82075877 44 ++ 2.862157 25 13 12 25 70 TCGA-DX-AB2E-01A-11R-A39D-07 Nchr3~115510005~LSAMP intergenic "-," "LSAMP," chr3~chr3 115510005 115725983 4 ++ 1.386294 4 3 1 4 10 TCGA-DX-AB2E-01A-11R-A39D-07 Nchr7~140912504~Nchr7~141137408 intergenic "-," "-," chr7~chr7 140912504 141137408 2 ++ 0.693147 2 1 1 2 8 TCGA-DX-AB2E-01A-11R-A39D-07 Nchr8~128806980~Nchr8~76880681 intergenic "-," "-," chr8~chr8 128806980 76880681 2 ++ 0.693147 1 1 0 1 10 TCGA-DX-AB2E-01A-11R-A39D-07 Nchr8~128806980~SPATC1 intergenic "-," "SPATC1," chr8~chr8 128806980 145101528 7 ++ 1.475076 7 2 5 7 28 TCGA-DX-AB2E-01A-11R-A39D-07 PCDH7~Nchr5~42289474 intergenic "PCDH7," "-," chr4~chr5 30921991 42289474 4 ++ 1.386294 4 2 2 4 6 TCGA-DX-AB2E-01A-11R-A39D-07 PCDH7~Nchr5~42289474 intergenic "PCDH7," "-," chr4~chr5 30921967 42289474 2 ++ 0.693147 2 0 2 2 6 TCGA-DX-AB2E-01A-11R-A39D-07 PLEC~JPH1 fusion "PLEC," "JPH1," chr8~chr8 145012319 75171738 10 -- 2.163956 10 6 4 10 18 TCGA-DX-AB2E-01A-11R-A39D-07 RP11-417O11.5~RP11-574K11.8 fusion "RP11-417O11.5," "RP11-574K11.8," chr10~chr10 75774090 75606093 2 ++ 0.693147 2 2 0 2 12 TCGA-DX-AB2E-01A-11R-A39D-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 2 ++ 0.693147 2 1 1 2 6 TCGA-DX-AB2E-01A-11R-A39D-07 RPSAP52~HMGA2 fusion "RPSAP52," "HMGA2," chr12~chr12 66220623 66221781 4 -+ 1.386294 4 3 1 4 4 TCGA-DX-AB2E-01A-11R-A39D-07 VCL~RP11-574K11.8 fusion "VCL," "RP11-574K11.8," chr10~chr10 75758133 75606093 39 ++ 2.509459 39 8 31 39 114 TCGA-DX-AB2E-01A-11R-A39D-07 WDYHV1~Nchr8~116346000 intergenic "WDYHV1," "-," chr8~chr8 124442273 116346000 15 ++ 2.303488 14 8 6 14 26 TCGA-DX-A7EN-01A-11R-A39D-07 AHNAK~LEMD3 fusion "AHNAK," "LEMD3," chr11~chr12 62272634 65604706 2 -+ 0.693147 1 0 1 1 8 TCGA-DX-A7EN-01A-11R-A39D-07 HKR1~Nchr12~27610709 intergenic "HKR1," "-," chr19~chr12 37838774 27610709 2 +- 0.693147 2 2 0 2 6 TCGA-DX-A7EN-01A-11R-A39D-07 HKR1~Nchr12~27613707 intergenic "HKR1," "-," chr19~chr12 37838774 27613707 3 +- 1.098612 3 3 0 3 2 TCGA-DX-A7EN-01A-11R-A39D-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 183 -+ 2.539138 73 0 73 73 118 TCGA-DX-A7EN-01A-11R-A39D-07 Nchr14~45066112~Nchr14~44862941 intergenic "-," "-," chr14~chr14 45066112 44862941 6 -- 1.56071 2 2 0 2 10 TCGA-DX-A7EN-01A-11R-A39D-07 Nchr14~45267133~Nchr14~45066216 intergenic "-," "-," chr14~chr14 45267133 45066216 6 -- 1.56071 3 1 2 3 10 TCGA-DX-A7EN-01A-11R-A39D-07 Nchr15~55105551~UNC13C intergenic "-," "UNC13C," chr15~chr15 55105551 54777398 3 -- 1.098612 3 0 3 3 4 TCGA-DX-A7EN-01A-11R-A39D-07 Nchr15~55155259~UNC13C intergenic "-," "UNC13C," chr15~chr15 55155259 54908457 6 -- 1.56071 6 4 2 6 14 TCGA-DX-A7EN-01A-11R-A39D-07 Nchr18~37331293~Nchr18~37115579 intergenic "-," "-," chr18~chr18 37331293 37115579 7 -- 1.94591 7 3 4 7 24 TCGA-DX-A7EN-01A-11R-A39D-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 22 -+ 2.689178 20 11 9 20 160 TCGA-DX-A7EN-01A-11R-A39D-07 Nchr1~173431463~TNFSF4 intergenic "-," "TNFSF4," chr1~chr1 173431463 173176324 3 -- 1.098612 3 2 1 3 10 TCGA-DX-A7EN-01A-11R-A39D-07 Nchr2~177065788~Nchr2~177065931 intergenic "-," "-," chr2~chr2 177065788 177065931 2 -- 0.693147 2 0 2 2 8 TCGA-DX-A7EN-01A-11R-A39D-07 Nchr7~20618404~Nchr7~20368479 intergenic "-," "-," chr7~chr7 20618404 20368479 5 -- 1.609438 4 3 1 4 2 TCGA-DX-A7EN-01A-11R-A39D-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 64 ++ 2.627037 5 0 5 5 4 TCGA-DX-A7EN-01A-11R-A39D-07 NchrX~124319492~ODZ1 intergenic "-," "ODZ1," chrX~chrX 124319492 124097666 2 -- 0.693147 1 1 0 1 8 TCGA-DX-A7EN-01A-11R-A39D-07 PHIP~MYO6 fusion "PHIP," "MYO6," chr6~chr6 79770195 76527218 4 -+ 1.386294 4 1 3 4 2 TCGA-DX-A7EN-01A-11R-A39D-07 ZC3H3~TRAPPC9 fusion "ZC3H3," "TRAPPC9," chr8~chr8 144618427 141461482 4 -- 1.386294 4 1 3 4 6 TCGA-DX-A7EN-01A-11R-A39D-07 ZNF540~Nchr19~31201664 intergenic "ZNF540," "-," chr19~chr19 38092006 31201664 3 ++ 0.636514 3 3 0 3 12 TCGA-3B-A9I1-01A-11R-A39D-07 AC011497.1~Nchr19~43155239 intergenic "AC011497.1," "-," chr19~chr19 42929356 43155239 2 ++ 0.693147 2 1 1 2 4 TCGA-3B-A9I1-01A-11R-A39D-07 AGBL1~Nchr15~87572056 intergenic "AGBL1," "-," chr15~chr15 87097768 87572056 4 ++ 1.039721 4 2 2 4 24 TCGA-3B-A9I1-01A-11R-A39D-07 AGBL1~Nchr15~87572056 intergenic "AGBL1," "-," chr15~chr15 87217667 87572056 31 ++ 2.595284 23 9 14 23 72 TCGA-3B-A9I1-01A-11R-A39D-07 GAPDH~NchrX~39647069 intergenic "GAPDH," "-," chr12~chrX 6646369 39647069 2 -- 0.693147 1 0 1 1 20 TCGA-3B-A9I1-01A-11R-A39D-07 LYPLA1~Nchr8~76776411 intergenic "LYPLA1," "-," chr8~chr8 55013468 76776411 11 -- 2.271869 7 6 1 7 22 TCGA-3B-A9I1-01A-11R-A39D-07 Nchr11~27603245~RPS25 intergenic "-," "RPS25," chr11~chr11 27603245 118889038 2 -- 0.693147 2 0 2 2 196 TCGA-3B-A9I1-01A-11R-A39D-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 88 -+ 2.566029 49 0 49 49 36 TCGA-3B-A9I1-01A-11R-A39D-07 Nchr12~95267416~TMCC3 intergenic "-," "TMCC3," chr12~chr12 95267416 94976314 17 -- 2.231607 15 15 0 15 18 TCGA-3B-A9I1-01A-11R-A39D-07 Nchr14~42618898~Nchr14~42832109 intergenic "-," "-," chr14~chr14 42618898 42832109 21 ++ 2.532591 19 5 14 19 38 TCGA-3B-A9I1-01A-11R-A39D-07 Nchr14~42864295~Nchr14~43334066 intergenic "-," "-," chr14~chr14 42864295 43334066 2 ++ 0.693147 2 1 1 2 6 TCGA-3B-A9I1-01A-11R-A39D-07 Nchr14~99439447~Nchr14~99439316 intergenic "-," "-," chr14~chr14 99439447 99439316 2 ++ 0.693147 2 1 1 2 2 TCGA-3B-A9I1-01A-11R-A39D-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 4 ++ 1.386294 4 1 3 4 8 TCGA-3B-A9I1-01A-11R-A39D-07 Nchr18~37115422~Nchr18~36788753 intergenic "-," "-," chr18~chr18 37115422 36788753 2 -- 0.693147 2 2 0 2 6 TCGA-3B-A9I1-01A-11R-A39D-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 4 -- 1.386294 3 2 1 3 2 TCGA-3B-A9I1-01A-11R-A39D-07 Nchr1~76081538~SLC44A5 intergenic "-," "SLC44A5," chr1~chr1 76081538 75805315 8 -- 2.079442 4 4 0 4 2 TCGA-3B-A9I1-01A-11R-A39D-07 Nchr5~93018536~NPM1 intergenic "-," "NPM1," chr5~chr5 93018536 170837597 3 -- 0.636514 3 3 0 3 12 TCGA-3B-A9I1-01A-11R-A39D-07 Nchr7~140912504~Nchr7~141137408 intergenic "-," "-," chr7~chr7 140912504 141137408 7 ++ 1.549826 2 1 1 2 4 TCGA-3B-A9I1-01A-11R-A39D-07 Nchr7~18241321~HDAC9 intergenic "-," "HDAC9," chr7~chr7 18241321 18535885 9 ++ 2.043192 3 2 1 3 4 TCGA-3B-A9I1-01A-11R-A39D-07 NchrX~73494177~NchrX~73289419 intergenic "-," "-," chrX~chrX 73494177 73289419 5 -- 1.332179 5 5 0 5 4 TCGA-3B-A9I1-01A-11R-A39D-07 RP11-335L9.1~Nchr3~177483365 intergenic "RP11-335L9.1," "-," chr3~chr3 177257281 177483365 7 ++ 1.747868 1 1 0 1 4 TCGA-3B-A9I1-01A-11R-A39D-07 RP11-335L9.1~RP11-91K9.1 fusion "RP11-335L9.1," "RP11-91K9.1," chr3~chr3 177347343 177613401 6 ++ 1.56071 4 3 1 4 2 TCGA-3B-A9I1-01A-11R-A39D-07 RP11-634B7.4~TRIM58 fusion "RP11-634B7.4,RP11-978I15.10," "TRIM58," chr1~chr1 247803731 248023919 8 ++ 1.386294 8 4 4 8 10 TCGA-3B-A9I1-01A-11R-A39D-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 6 ++ 1.56071 5 3 2 5 12 TCGA-3B-A9I1-01A-11R-A39D-07 ZNF787~RP11-677C1.2 fusion "ZNF787," "RP11-677C1.2," chr19~chr12 56614508 29614667 33 -+ 2.7665 33 14 19 33 76 TCGA-3B-A9I1-01A-11R-A39D-07 ZNF787~RP11-677C1.2 fusion "ZNF787," "RP11-677C1.2," chr19~chr12 56614508 29614729 7 -+ 1.153742 7 6 1 7 26 TCGA-3B-A9I1-01A-11R-A39D-07 ZNF787~RP11-677C1.2 fusion "ZNF787," "RP11-677C1.2," chr19~chr12 56614508 29639819 9 -+ 1.427061 9 5 4 9 34 TCGA-3B-A9HS-01A-11R-A39D-07 AATF~Nchr12~87489225 intergenic "AATF," "-," chr17~chr12 35348156 87489225 90 ++ 2.860432 88 40 48 88 282 TCGA-3B-A9HS-01A-11R-A39D-07 AATF~Nchr5~174644930 intergenic "AATF," "-," chr17~chr5 35348156 174644930 2 ++ 0.693147 2 1 1 2 2 TCGA-3B-A9HS-01A-11R-A39D-07 AC025263.3~Nchr12~80974188 intergenic "AC025263.3," "-," chr12~chr12 70226417 80974188 13 +- 2.204785 12 9 3 12 10 TCGA-3B-A9HS-01A-11R-A39D-07 ACACA~APP fusion "ACACA," "APP," chr17~chr21 35715942 27425664 4 -- 1.039721 3 0 3 3 4 TCGA-3B-A9HS-01A-11R-A39D-07 ACACA~C12orf26 fusion "ACACA," "C12orf26," chr17~chr12 35715942 82870423 22 -+ 2.473208 17 6 11 17 112 TCGA-3B-A9HS-01A-11R-A39D-07 ACACA~C12orf26 fusion "ACACA," "C12orf26," chr17~chr12 35715942 82871060 28 -+ 2.729054 25 13 12 25 90 TCGA-3B-A9HS-01A-11R-A39D-07 ACACA~C12orf26 fusion "ACACA," "C12orf26," chr17~chr12 35715937 82871060 4 -+ 1.039721 4 2 2 4 102 TCGA-3B-A9HS-01A-11R-A39D-07 ACACA~GLIPR1L2 fusion "ACACA," "GLIPR1L2," chr17~chr12 35685778 75816684 5 -+ 1.332179 5 3 2 5 488 TCGA-3B-A9HS-01A-11R-A39D-07 ACACA~GLIPR1L2 fusion "ACACA," "GLIPR1L2," chr17~chr12 35687113 75816684 296 -+ 3.296664 292 108 167 292 530 TCGA-3B-A9HS-01A-11R-A39D-07 ACACA~Nchr12~54495998 intergenic "ACACA," "-," chr17~chr12 35687113 54495998 38 -+ 2.962323 36 23 13 36 96 TCGA-3B-A9HS-01A-11R-A39D-07 ACACA~Nchr12~86007984 intergenic "ACACA," "-," chr17~chr12 35640168 86007984 2 -- 0.693147 2 0 2 2 6 TCGA-3B-A9HS-01A-11R-A39D-07 ACACA~Nchr12~86013205 intergenic "ACACA," "-," chr17~chr12 35640168 86013205 10 -- 1.748067 9 5 4 9 8 TCGA-3B-A9HS-01A-11R-A39D-07 ACACA~Nchr21~30781684 intergenic "ACACA," "-," chr17~chr21 35766352 30781684 11 -- 2.019815 10 9 1 10 10 TCGA-3B-A9HS-01A-11R-A39D-07 ACACB~MARCH9 fusion "ACACB," "MARCH9," chr12~chr12 109675185 58150712 19 ++ 2.302014 17 4 13 17 30 TCGA-3B-A9HS-01A-11R-A39D-07 ACSS3~INSR fusion "ACSS3," "INSR," chr12~chr19 81545875 7143101 17 +- 2.313154 8 8 0 8 8 TCGA-3B-A9HS-01A-11R-A39D-07 ACSS3~METTL21B fusion "ACSS3," "METTL21B," chr12~chr12 81503483 58166800 6 ++ 1.242453 5 4 1 5 26 TCGA-3B-A9HS-01A-11R-A39D-07 ACSS3~Nchr12~110541560 intergenic "ACSS3," "-," chr12~chr12 81610775 110541560 3 ++ 1.098612 1 0 1 1 4 TCGA-3B-A9HS-01A-11R-A39D-07 ACSS3~Nchr12~85964046 intergenic "ACSS3," "-," chr12~chr12 81610775 85964046 3 +- 1.098612 1 0 1 1 2 TCGA-3B-A9HS-01A-11R-A39D-07 AFF1~KLHL8 fusion "AFF1," "KLHL8," chr4~chr4 88016121 88116842 2 +- 0.693147 2 0 2 2 8 TCGA-3B-A9HS-01A-11R-A39D-07 AGAP2~RAB21 fusion "AGAP2," "RAB21," chr12~chr12 58123422 72179311 4 -+ 1.039721 4 4 0 4 12 TCGA-3B-A9HS-01A-11R-A39D-07 AKAP7~Nchr6~139924547 intergenic "AKAP7," "-," chr6~chr6 131540948 139924547 3 +- 0.636514 3 1 2 3 4 TCGA-3B-A9HS-01A-11R-A39D-07 AKAP7~Nchr6~140002307 intergenic "AKAP7," "-," chr6~chr6 131540948 140002307 2 +- 0.693147 2 0 2 2 6 TCGA-3B-A9HS-01A-11R-A39D-07 ANKLE2~MGAT1 fusion "ANKLE2," "MGAT1," chr12~chr5 133324418 180220097 39 -- 2.584224 38 22 16 38 128 TCGA-3B-A9HS-01A-11R-A39D-07 AP3S1~Nchr14~36923234 intergenic "AP3S1," "-," chr5~chr14 115238689 36923234 7 +- 1.277034 6 5 1 6 14 TCGA-3B-A9HS-01A-11R-A39D-07 ARHGEF18~ACACB fusion "ARHGEF18," "ACACB," chr19~chr12 7460133 109634813 251 ++ 2.752604 240 229 11 240 1142 TCGA-3B-A9HS-01A-11R-A39D-07 ARHGEF18~ACACB fusion "ARHGEF18," "ACACB," chr19~chr12 7460133 109637207 27 ++ 2.259594 27 25 2 27 302 TCGA-3B-A9HS-01A-11R-A39D-07 ARHGEF18~ACACB fusion "ARHGEF18," "ACACB," chr19~chr12 7460133 109639372 27 ++ 2.309864 27 24 3 27 146 TCGA-3B-A9HS-01A-11R-A39D-07 ARHGEF18~ACACB fusion "ARHGEF18," "ACACB," chr19~chr12 7460133 109644515 17 ++ 2.588573 16 16 0 16 56 TCGA-3B-A9HS-01A-11R-A39D-07 ARHGEF18~Nchr8~33996335 intergenic "ARHGEF18," "-," chr19~chr8 7460133 33996335 4 +- 1.386294 2 1 1 2 6 TCGA-3B-A9HS-01A-11R-A39D-07 ARHGEF18~Nchr8~33997213 intergenic "ARHGEF18," "-," chr19~chr8 7460133 33997213 3 +- 1.098612 3 2 1 3 10 TCGA-3B-A9HS-01A-11R-A39D-07 ARL10~Nchr5~153236954 intergenic "ARL10," "-," chr5~chr5 175795985 153236954 28 ++ 2.88661 27 16 11 27 72 TCGA-3B-A9HS-01A-11R-A39D-07 ATP2C1~C18orf45 fusion "ATP2C1," "C18orf45," chr3~chr18 130660543 20889708 7 +- 1.747868 6 2 4 6 8 TCGA-3B-A9HS-01A-11R-A39D-07 ATP2C1~Nchr18~39222990 intergenic "ATP2C1," "-," chr3~chr18 130660543 39222990 11 +- 1.972247 8 3 5 8 22 TCGA-3B-A9HS-01A-11R-A39D-07 ATP2C1~Nchr18~39223315 intergenic "ATP2C1," "-," chr3~chr18 130660543 39223315 3 +- 1.098612 3 1 2 3 4 TCGA-3B-A9HS-01A-11R-A39D-07 ATP2C1~Nchr18~39229460 intergenic "ATP2C1," "-," chr3~chr18 130660543 39229460 14 +- 2.242973 14 4 10 14 42 TCGA-3B-A9HS-01A-11R-A39D-07 ATP2C1~Nchr18~39238542 intergenic "ATP2C1," "-," chr3~chr18 130660543 39238542 3 +- 0.636514 3 1 2 3 6 TCGA-3B-A9HS-01A-11R-A39D-07 BACH1~OSBPL8 fusion "BACH1," "OSBPL8," chr21~chr12 30702014 76752591 16 +- 2.306669 14 4 10 14 20 TCGA-3B-A9HS-01A-11R-A39D-07 BEST3~CCT2 fusion "BEST3," "CCT2," chr12~chr12 70037469 69995075 14 -+ 1.668174 13 3 10 13 94 TCGA-3B-A9HS-01A-11R-A39D-07 BEST3~CCT2 fusion "BEST3," "CCT2," chr12~chr12 70065208 69995075 30 -+ 2.655725 30 10 20 30 78 TCGA-3B-A9HS-01A-11R-A39D-07 BEST3~Nchr12~86309188 intergenic "BEST3," "-," chr12~chr12 70065208 86309188 9 -+ 1.83102 9 6 3 9 20 TCGA-3B-A9HS-01A-11R-A39D-07 BEST3~PTPRR fusion "BEST3," "PTPRR," chr12~chr12 70065208 71158558 3 -- 1.098612 3 2 1 3 6 TCGA-3B-A9HS-01A-11R-A39D-07 C12orf26~PHACTR2 fusion "C12orf26," "PHACTR2," chr12~chr6 82850599 144033153 2 ++ 0.693147 2 1 1 2 2 TCGA-3B-A9HS-01A-11R-A39D-07 C12orf63~Nchr12~58438091 intergenic "C12orf63," "-," chr12~chr12 97079016 58438091 20 ++ 2.622996 19 8 11 19 48 TCGA-3B-A9HS-01A-11R-A39D-07 C12orf63~Nchr12~58464180 intergenic "C12orf63," "-," chr12~chr12 97079016 58464180 2 ++ 0.693147 1 1 0 1 6 TCGA-3B-A9HS-01A-11R-A39D-07 C12orf63~Nchr12~58465102 intergenic "C12orf63," "-," chr12~chr12 97079016 58465102 12 ++ 1.814308 12 3 9 12 18 TCGA-3B-A9HS-01A-11R-A39D-07 CCDC99~Nchr5~147228150 intergenic "CCDC99," "-," chr5~chr5 169010893 147228150 5 ++ 1.609438 5 3 2 5 244 TCGA-3B-A9HS-01A-11R-A39D-07 CCDC99~SCGB3A2 fusion "CCDC99," "SCGB3A2," chr5~chr5 169010893 147261009 49 ++ 2.978997 49 25 24 49 226 TCGA-3B-A9HS-01A-11R-A39D-07 CDK17~Nchr12~68403673 intergenic "CDK17," "-," chr12~chr12 96691048 68403673 2 -- 0.693147 2 1 1 2 6 TCGA-3B-A9HS-01A-11R-A39D-07 CDK17~RP11-256L6.2 fusion "CDK17," "RP11-256L6.2," chr12~chr12 96728497 96421176 30 -+ 2.609516 27 19 8 27 48 TCGA-3B-A9HS-01A-11R-A39D-07 CDK17~RP11-543H12.1 fusion "CDK17," "RP11-543H12.1," chr12~chr12 96682945 81488511 4 -- 1.386294 4 4 0 4 2 TCGA-3B-A9HS-01A-11R-A39D-07 CEP290~Nchr12~87375341 intergenic "CEP290," "-," chr12~chr12 88519023 87375341 263 -+ 3.124064 120 31 89 120 118 TCGA-3B-A9HS-01A-11R-A39D-07 CEP290~Nchr12~87489225 intergenic "CEP290," "-," chr12~chr12 88519023 87489225 3 -+ 1.098612 3 2 1 3 278 TCGA-3B-A9HS-01A-11R-A39D-07 CHGA~PTPRB fusion "CHGA," "PTPRB,RP11-588H23.3," chr14~chr12 93399196 70913979 4 ++ 0.562335 4 2 2 4 14 TCGA-3B-A9HS-01A-11R-A39D-07 CHGA~RP11-588H23.3 fusion "CHGA," "RP11-588H23.3," chr14~chr12 93399196 70901675 6 ++ 1.56071 6 0 6 6 2 TCGA-3B-A9HS-01A-11R-A39D-07 CHGA~RP11-588H23.3 fusion "CHGA," "RP11-588H23.3," chr14~chr12 93399196 70921455 3 ++ 1.098612 3 0 3 3 2 TCGA-3B-A9HS-01A-11R-A39D-07 CHGA~XRCC6BP1 fusion "CHGA," "XRCC6BP1," chr14~chr12 93399196 58345541 2 ++ 0.693147 2 1 1 2 4 TCGA-3B-A9HS-01A-11R-A39D-07 CNOT6~Nchr12~85946525 intergenic "CNOT6," "-," chr5~chr12 179921763 85946525 5 +- 1.609438 4 3 1 4 18 TCGA-3B-A9HS-01A-11R-A39D-07 CNOT6~RP11-315E17.1 fusion "CNOT6," "RP11-315E17.1," chr5~chr12 179921763 81811077 2 ++ 0.693147 2 1 1 2 6 TCGA-3B-A9HS-01A-11R-A39D-07 CNOT6~TSPAN8 fusion "CNOT6," "TSPAN8," chr5~chr12 179980471 71551567 5 +- 1.332179 3 0 3 3 14 TCGA-3B-A9HS-01A-11R-A39D-07 CNOT6~TSPAN8 fusion "CNOT6," "TSPAN8," chr5~chr12 179977117 71551567 2 +- 0.693147 2 0 2 2 10 TCGA-3B-A9HS-01A-11R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271304 94039035 2 -+ 0.693147 1 0 1 1 8 TCGA-3B-A9HS-01A-11R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94042395 4 -+ 1.386294 3 3 0 3 12 TCGA-3B-A9HS-01A-11R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48269875 189859456 5 -+ 0.500402 5 5 0 5 10 TCGA-3B-A9HS-01A-11R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266738 189861891 4 -+ 0.562335 1 0 1 1 6 TCGA-3B-A9HS-01A-11R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268178 189870076 4 -+ 1.039721 3 3 0 3 14 TCGA-3B-A9HS-01A-11R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268178 189871071 2 -+ 0.693147 1 1 0 1 8 TCGA-3B-A9HS-01A-11R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047143 48265299 4 +- 0.562335 3 1 2 3 2 TCGA-3B-A9HS-01A-11R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94056607 48270054 5 +- 1.05492 2 2 0 2 6 TCGA-3B-A9HS-01A-11R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94054949 48275118 3 +- 0.636514 3 2 1 3 2 TCGA-3B-A9HS-01A-11R-A39D-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94047050 189867030 4 ++ 1.039721 1 0 1 1 2 TCGA-3B-A9HS-01A-11R-A39D-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189871716 48264898 3 +- 1.098612 2 1 1 2 18 TCGA-3B-A9HS-01A-11R-A39D-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870985 48265998 4 +- 1.039721 4 1 3 4 18 TCGA-3B-A9HS-01A-11R-A39D-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189859468 48269889 3 +- 1.098612 1 1 0 1 8 TCGA-3B-A9HS-01A-11R-A39D-07 CTC-338M12.3~PHACTR2 fusion "CTC-338M12.3," "PHACTR2," chr5~chr6 180688385 144070122 6 ++ 1.791759 6 3 3 6 32 TCGA-3B-A9HS-01A-11R-A39D-07 CTDSP2~CPM fusion "CTDSP2," "CPM," chr12~chr12 58240155 69265736 3 -- 1.098612 3 1 2 3 10 TCGA-3B-A9HS-01A-11R-A39D-07 CTDSP2~CPM fusion "CTDSP2," "CPM," chr12~chr12 58240155 69279669 3 -- 1.098612 3 0 3 3 14 TCGA-3B-A9HS-01A-11R-A39D-07 CTDSP2~CPM fusion "CTDSP2," "CPM," chr12~chr12 58240155 69326620 13 -- 1.631345 13 4 9 13 20 TCGA-3B-A9HS-01A-11R-A39D-07 CTDSP2~MGAT4C fusion "CTDSP2," "MGAT4C," chr12~chr12 58240155 86829042 15 -- 2.430791 8 1 7 8 6 TCGA-3B-A9HS-01A-11R-A39D-07 CTDSP2~Nchr12~69199091 intergenic "CTDSP2," "-," chr12~chr12 58240155 69199091 3 -- 1.098612 3 1 2 3 4 TCGA-3B-A9HS-01A-11R-A39D-07 CTDSP2~Nchr12~86055924 intergenic "CTDSP2," "-," chr12~chr12 58240155 86055924 483 -- 3.284107 421 81 340 421 794 TCGA-3B-A9HS-01A-11R-A39D-07 CTDSP2~Nchr12~86069572 intergenic "CTDSP2," "-," chr12~chr12 58240155 86069572 21 -- 2.557508 17 4 13 17 826 TCGA-3B-A9HS-01A-11R-A39D-07 CTDSP2~TADA2A fusion "CTDSP2," "TADA2A," chr12~chr17 58240155 35818626 12 -+ 1.86368 11 1 10 11 156 TCGA-3B-A9HS-01A-11R-A39D-07 CTDSP2~TADA2A fusion "CTDSP2," "TADA2A," chr12~chr17 58240155 35822182 43 -+ 2.84768 42 5 37 42 152 TCGA-3B-A9HS-01A-11R-A39D-07 CTDSP2~TADA2A fusion "CTDSP2," "TADA2A," chr12~chr17 58240155 35825535 4 -+ 1.039721 4 0 4 4 80 TCGA-3B-A9HS-01A-11R-A39D-07 CTDSP2~TSPAN8 fusion "CTDSP2," "TSPAN8," chr12~chr12 58240155 71537993 11 -- 1.720193 10 1 9 10 98 TCGA-3B-A9HS-01A-11R-A39D-07 CTDSP2~TSPAN8 fusion "CTDSP2," "TSPAN8," chr12~chr12 58240155 71551567 551 -- 3.300891 536 138 398 536 1012 TCGA-3B-A9HS-01A-11R-A39D-07 CTDSP2~UTRN fusion "CTDSP2," "UTRN," chr12~chr6 58240155 144811207 29 -+ 2.853177 28 9 19 28 34 TCGA-3B-A9HS-01A-11R-A39D-07 DUSP14~ACSS3 fusion "DUSP14," "ACSS3," chr17~chr12 35850064 81503339 5 ++ 1.609438 2 2 0 2 4 TCGA-3B-A9HS-01A-11R-A39D-07 ELK3~Nchr12~78169169 intergenic "ELK3," "-," chr12~chr12 96641512 78169169 3 +- 1.098612 3 3 0 3 20 TCGA-3B-A9HS-01A-11R-A39D-07 ELK3~Nchr12~92126013 intergenic "ELK3," "-," chr12~chr12 96641512 92126013 19 +- 2.232694 17 5 12 17 16 TCGA-3B-A9HS-01A-11R-A39D-07 ELK3~Nchr5~174883112 intergenic "RP11-394J1.2,ELK3," "-," chr12~chr5 96617551 174883112 15 ++ 2.153532 15 7 8 15 34 TCGA-3B-A9HS-01A-11R-A39D-07 ENPP1~INSR fusion "ENPP1," "INSR," chr6~chr19 132129415 7152938 4 +- 1.386294 4 3 1 4 10 TCGA-3B-A9HS-01A-11R-A39D-07 EPS15~TRIM63 fusion "EPS15," "TRIM63," chr1~chr1 51984871 26393986 4 -- 1.039721 4 2 2 4 2 TCGA-3B-A9HS-01A-11R-A39D-07 FAM123B~NchrX~63137698 intergenic "FAM123B," "-," chrX~chrX 63413019 63137698 3 -- 1.098612 2 0 2 2 4 TCGA-3B-A9HS-01A-11R-A39D-07 FAM54A~GFPT2 fusion "FAM54A," "GFPT2," chr6~chr5 136570175 179765600 4 -- 1.386294 4 3 1 4 16 TCGA-3B-A9HS-01A-11R-A39D-07 FAM54A~GFPT2 fusion "FAM54A," "GFPT2," chr6~chr5 136571402 179765600 5 -- 1.332179 5 5 0 5 2 TCGA-3B-A9HS-01A-11R-A39D-07 FAM54A~GFPT2 fusion "FAM54A," "GFPT2," chr6~chr5 136571114 179765600 4 -- 1.039721 4 2 2 4 14 TCGA-3B-A9HS-01A-11R-A39D-07 FBXO5~Nchr5~158963841 intergenic "FBXO5," "-," chr6~chr5 153304622 158963841 4 +- 1.386294 3 1 2 3 10 TCGA-3B-A9HS-01A-11R-A39D-07 FER~GNB2L1 fusion "FER," "GNB2L1," chr5~chr5 108120949 180666125 4 +- 1.386294 3 1 2 3 232 TCGA-3B-A9HS-01A-11R-A39D-07 GARS~NOD1 fusion "GARS," "NOD1," chr7~chr7 30671157 30487997 3 +- 0.636514 3 0 3 3 4 TCGA-3B-A9HS-01A-11R-A39D-07 GFPT2~B4GALNT1 fusion "GFPT2," "B4GALNT1,SLC26A10,SLC26A10," chr5~chr12 179734176 58018649 5 -+ 1.609438 4 2 2 4 8 TCGA-3B-A9HS-01A-11R-A39D-07 GFPT2~Nchr19~31308069 intergenic "GFPT2," "-," chr5~chr19 179734176 31308069 2 -- 0.693147 2 2 0 2 4 TCGA-3B-A9HS-01A-11R-A39D-07 GFPT2~Nchr19~31312546 intergenic "GFPT2," "-," chr5~chr19 179734176 31312546 64 -- 2.914625 64 37 23 64 68 TCGA-3B-A9HS-01A-11R-A39D-07 GFPT2~PPFIA2 fusion "GFPT2," "PPFIA2," chr5~chr12 179757700 81747118 11 -- 2.271869 10 4 6 10 42 TCGA-3B-A9HS-01A-11R-A39D-07 GIT2~Nchr12~82611354 intergenic "GIT2," "-," chr12~chr12 110390897 82611354 11 -+ 1.84622 10 1 9 10 8 TCGA-3B-A9HS-01A-11R-A39D-07 GIT2~Nchr12~82611354 intergenic "GIT2," "-," chr12~chr12 110388972 82611354 8 -+ 1.320888 6 3 3 6 12 TCGA-3B-A9HS-01A-11R-A39D-07 GIT2~RP11-150C16.1 fusion "GIT2," "RP11-150C16.1," chr12~chr12 110388972 59384796 14 -+ 1.846889 14 3 11 14 4 TCGA-3B-A9HS-01A-11R-A39D-07 GIT2~RP11-150C16.1 fusion "GIT2," "RP11-150C16.1," chr12~chr12 110390897 59396535 35 -+ 2.637135 35 8 27 35 44 TCGA-3B-A9HS-01A-11R-A39D-07 GIT2~RP11-150C16.1 fusion "GIT2," "RP11-150C16.1," chr12~chr12 110389017 59396535 4 -+ 1.386294 4 2 2 4 48 TCGA-3B-A9HS-01A-11R-A39D-07 GIT2~RP11-150C16.1 fusion "GIT2," "RP11-150C16.1," chr12~chr12 110388972 59396535 17 -+ 2.42548 17 7 10 17 54 TCGA-3B-A9HS-01A-11R-A39D-07 GIT2~RP11-150C16.1 fusion "GIT2," "RP11-150C16.1," chr12~chr12 110390897 59408383 3 -+ 0.636514 3 2 1 3 4 TCGA-3B-A9HS-01A-11R-A39D-07 GIT2~RP11-150C16.1 fusion "GIT2," "RP11-150C16.1," chr12~chr12 110388972 59408383 11 -+ 2.019815 11 3 8 11 24 TCGA-3B-A9HS-01A-11R-A39D-07 GIT2~RP11-150C16.1 fusion "GIT2," "RP11-150C16.1," chr12~chr12 110390897 59419760 3 -+ 0.636514 3 0 3 3 4 TCGA-3B-A9HS-01A-11R-A39D-07 GLIPR1~CDK17 fusion "GLIPR1," "CDK17," chr12~chr12 75875859 96728643 14 +- 2.205598 12 7 5 12 52 TCGA-3B-A9HS-01A-11R-A39D-07 GLIPR1~Nchr5~180546743 intergenic "GLIPR1,KRR1," "-," chr12~chr5 75895703 180546743 3 -- 1.098612 2 1 1 2 2 TCGA-3B-A9HS-01A-11R-A39D-07 GLIPR1~Nchr5~180548614 intergenic "GLIPR1,KRR1," "-," chr12~chr5 75895703 180548614 3 -- 1.098612 3 1 2 3 42 TCGA-3B-A9HS-01A-11R-A39D-07 GS1-410F4.4~BEST3 fusion "GS1-410F4.4," "BEST3," chr12~chr12 68323167 70066745 6 +- 1.791759 6 3 3 6 18 TCGA-3B-A9HS-01A-11R-A39D-07 GS1-410F4.4~BEST3 fusion "GS1-410F4.4," "BEST3," chr12~chr12 68323167 70071037 16 +- 2.599302 16 8 8 16 60 TCGA-3B-A9HS-01A-11R-A39D-07 HNRNPH1~INSR fusion "HNRNPH1," "INSR," chr5~chr19 179044985 7184648 37 -- 2.954872 36 17 19 36 138 TCGA-3B-A9HS-01A-11R-A39D-07 HNRNPH1~INSR fusion "HNRNPH1," "INSR," chr5~chr19 179044990 7184648 38 -- 2.683924 38 24 13 38 120 TCGA-3B-A9HS-01A-11R-A39D-07 ID3~EBNA1BP2 fusion "ID3," "EBNA1BP2,WDR65," chr1~chr1 23885618 43638534 2 -- 0.693147 2 2 0 2 4 TCGA-3B-A9HS-01A-11R-A39D-07 IFT81~INSR fusion "IFT81," "INSR," chr12~chr19 110581350 7184648 17 +- 2.3947 16 5 11 16 126 TCGA-3B-A9HS-01A-11R-A39D-07 IFT81~INSR fusion "IFT81," "INSR," chr12~chr19 110574665 7184648 66 +- 2.979317 65 29 35 65 122 TCGA-3B-A9HS-01A-11R-A39D-07 IFT81~Nchr12~68267405 intergenic "IFT81," "-," chr12~chr12 110574665 68267405 2 +- 0.693147 2 2 0 2 2 TCGA-3B-A9HS-01A-11R-A39D-07 IFT81~Nchr12~68372262 intergenic "IFT81," "-," chr12~chr12 110574665 68372262 213 +- 3.209072 209 141 66 209 424 TCGA-3B-A9HS-01A-11R-A39D-07 IFT81~Nchr6~110695353 intergenic "IFT81," "-," chr12~chr6 110574665 110695353 7 ++ 1.747868 6 1 5 6 16 TCGA-3B-A9HS-01A-11R-A39D-07 IFT81~Nchr6~110699787 intergenic "IFT81," "-," chr12~chr6 110574665 110699787 3 ++ 1.098612 3 1 2 3 2 TCGA-3B-A9HS-01A-11R-A39D-07 ILF3~Nchr12~76591156 intergenic "ILF3," "-," chr19~chr12 10794646 76591156 8 ++ 1.732868 8 5 3 8 24 TCGA-3B-A9HS-01A-11R-A39D-07 ILF3~Nchr12~76598852 intergenic "ILF3," "-," chr19~chr12 10794646 76598852 6 ++ 1.791759 4 2 2 4 2 TCGA-3B-A9HS-01A-11R-A39D-07 INSR~MGAT4C fusion "INSR," "MGAT4C," chr19~chr12 7293803 86829042 14 -- 2.304619 7 7 0 7 8 TCGA-3B-A9HS-01A-11R-A39D-07 INSR~Nchr12~70099784 intergenic "INSR," "-," chr19~chr12 7163043 70099784 9 -- 1.889159 7 6 1 7 14 TCGA-3B-A9HS-01A-11R-A39D-07 INSR~Nchr12~70109367 intergenic "INSR," "-," chr19~chr12 7163043 70109367 125 -- 3.002232 121 86 33 121 286 TCGA-3B-A9HS-01A-11R-A39D-07 INSR~Nchr12~70113946 intergenic "INSR," "-," chr19~chr12 7163043 70113946 20 -- 2.268535 21 14 6 21 64 TCGA-3B-A9HS-01A-11R-A39D-07 INSR~Nchr12~70113979 intergenic "INSR," "-," chr19~chr12 7163043 70113979 25 -- 2.622498 25 14 11 25 84 TCGA-3B-A9HS-01A-11R-A39D-07 ITPK1~LAMA2 fusion "ITPK1," "LAMA2," chr14~chr6 93429096 129641683 6 -+ 1.242453 3 2 1 3 2 TCGA-3B-A9HS-01A-11R-A39D-07 KLHL8~RP11-725C19.1 fusion "RP11-476C8.3,KLHL8," "RP11-725C19.1," chr4~chr4 88141570 138983962 5 -+ 1.332179 4 3 1 4 6 TCGA-3B-A9HS-01A-11R-A39D-07 KRR1~Nchr12~85793271 intergenic "KRR1," "-," chr12~chr12 75905293 85793271 58 -+ 2.819369 50 19 31 50 266 TCGA-3B-A9HS-01A-11R-A39D-07 KRR1~Nchr12~85793271 intergenic "KRR1," "-," chr12~chr12 75905258 85793271 2 -+ 0.693147 1 1 0 1 326 TCGA-3B-A9HS-01A-11R-A39D-07 KRR1~Nchr6~126793902 intergenic "KRR1," "-," chr12~chr6 75905293 126793902 44 -+ 2.911705 42 16 26 42 214 TCGA-3B-A9HS-01A-11R-A39D-07 KRR1~Nchr6~126801724 intergenic "KRR1," "-," chr12~chr6 75905293 126801724 7 -+ 1.747868 7 3 4 7 130 TCGA-3B-A9HS-01A-11R-A39D-07 LAMA2~NUP107 fusion "LAMA2," "NUP107," chr6~chr12 129641800 69135593 19 ++ 2.187271 16 9 7 16 44 TCGA-3B-A9HS-01A-11R-A39D-07 LRP1~FAM19A2 fusion "LRP1," "FAM19A2," chr12~chr12 57569488 62104198 93 +- 2.639911 90 18 72 90 354 TCGA-3B-A9HS-01A-11R-A39D-07 LRP1~RP11-114H23.1 fusion "LRP1," "RP11-114H23.1," chr12~chr12 57550703 76025094 2 +- 0.693147 2 1 1 2 6 TCGA-3B-A9HS-01A-11R-A39D-07 LRP1~RP11-114H23.1 fusion "LRP1," "RP11-114H23.1," chr12~chr12 57550066 76025094 17 +- 2.639341 16 11 5 16 26 TCGA-3B-A9HS-01A-11R-A39D-07 LRP1~SMAGP fusion "LRP1," "SMAGP,DAZAP2," chr12~chr12 57569488 51639845 4 ++ 1.039721 4 4 0 4 362 TCGA-3B-A9HS-01A-11R-A39D-07 LTA4H~LAMA2 fusion "LTA4H," "LAMA2," chr12~chr6 96429139 129571257 6 -+ 1.791759 6 2 4 6 10 TCGA-3B-A9HS-01A-11R-A39D-07 LTA4H~Nchr12~76729219 intergenic "LTA4H," "-," chr12~chr12 96415925 76729219 10 -+ 1.643418 3 3 0 3 4 TCGA-3B-A9HS-01A-11R-A39D-07 LTA4H~Nchr12~86000002 intergenic "LTA4H,LTA4H," "-," chr12~chr12 96406966 86000002 3 -- 1.098612 2 1 1 2 2 TCGA-3B-A9HS-01A-11R-A39D-07 LTA4H~Nchr12~88621777 intergenic "LTA4H," "-," chr12~chr12 96429139 88621777 7 -- 1.747868 6 5 1 6 30 TCGA-3B-A9HS-01A-11R-A39D-07 MDM1~INSR fusion "MDM1," "INSR," chr12~chr19 68696400 7152938 15 -- 2.303488 15 6 9 15 30 TCGA-3B-A9HS-01A-11R-A39D-07 MDM1~Nchr12~109809938 intergenic "MDM1," "-," chr12~chr12 68707223 109809938 2 -+ 0.693147 2 0 2 2 6 TCGA-3B-A9HS-01A-11R-A39D-07 MDM1~Nchr12~86943301 intergenic "MDM1," "-," chr12~chr12 68707223 86943301 7 -+ 1.475076 7 4 3 7 22 TCGA-3B-A9HS-01A-11R-A39D-07 MDM1~Nchr12~86943430 intergenic "MDM1," "-," chr12~chr12 68707223 86943430 4 -+ 1.386294 4 1 3 4 12 TCGA-3B-A9HS-01A-11R-A39D-07 MDM2~Nchr12~110520749 intergenic "MDM2," "-," chr12~chr12 69218431 110520749 9 ++ 2.043192 9 5 4 9 20 TCGA-3B-A9HS-01A-11R-A39D-07 MDM2~Nchr12~110520749 intergenic "MDM2," "-," chr12~chr12 69222711 110520749 3 ++ 1.098612 3 2 1 3 14 TCGA-3B-A9HS-01A-11R-A39D-07 MDM2~Nchr12~110550088 intergenic "MDM2," "-," chr12~chr12 69218431 110550088 3 ++ 1.098612 3 2 1 3 2 TCGA-3B-A9HS-01A-11R-A39D-07 MDM2~RP11-620J15.1 fusion "MDM2," "RP11-620J15.1," chr12~chr12 69207408 58236042 28 ++ 2.264772 28 9 19 28 64 TCGA-3B-A9HS-01A-11R-A39D-07 MGAT4C~PPFIA2 fusion "MGAT4C," "PPFIA2," chr12~chr12 86727843 81657169 13 -- 2.204785 8 6 2 8 4 TCGA-3B-A9HS-01A-11R-A39D-07 NAP1L1~ELK3 fusion "NAP1L1," "RP11-394J1.2,ELK3," chr12~chr12 76478347 96617343 68 -+ 2.864712 66 13 53 66 206 TCGA-3B-A9HS-01A-11R-A39D-07 NAP1L1~Nchr12~69559916 intergenic "NAP1L1," "-," chr12~chr12 76467983 69559916 14 -+ 1.970181 13 6 7 13 58 TCGA-3B-A9HS-01A-11R-A39D-07 NAP1L1~Nchr12~69585235 intergenic "NAP1L1," "-," chr12~chr12 76467983 69585235 3 -+ 0.636514 3 2 1 3 28 TCGA-3B-A9HS-01A-11R-A39D-07 NBPF8~Nchr1~115675583 intergenic "NBPF8," "-," chr1~chr1 144593965 115675583 6 +- 1.56071 6 2 4 6 16 TCGA-3B-A9HS-01A-11R-A39D-07 NEDD1~TMTC2 fusion "NEDD1," "TMTC2," chr12~chr12 97313903 83289597 8 ++ 1.906155 8 6 2 8 12 TCGA-3B-A9HS-01A-11R-A39D-07 NOC2L~LRRC38 fusion "NOC2L," "LRRC38," chr1~chr1 889162 13802567 2 -- 0.693147 2 0 2 2 8 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 98 -+ 2.608414 58 0 57 58 62 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr12~109749684~Nchr12~77838590 intergenic "-," "-," chr12~chr12 109749684 77838590 10 +- 1.834372 5 3 2 5 24 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr12~58161096~Nchr12~81503907 intergenic "-," "-," chr12~chr12 58161096 81503907 13 -- 2.138397 13 7 6 13 52 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr12~58915823~Nchr5~174803054 intergenic "-," "-," chr12~chr5 58915823 174803054 4 -+ 1.039721 4 1 3 4 2 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr12~74544782~Nchr12~51294292 intergenic "-," "-," chr12~chr12 74544782 51294292 15 -- 2.488328 8 3 5 8 40 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr12~74551570~Nchr12~51287553 intergenic "-," "-," chr12~chr12 74551570 51287553 8 -- 1.906155 3 3 0 3 10 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr12~74551570~Nchr12~91709233 intergenic "-," "-," chr12~chr12 74551570 91709233 2 -+ 0.693147 2 0 2 2 2 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr12~76598981~ACSS3 intergenic "-," "ACSS3," chr12~chr12 76598981 81545623 3 ++ 1.098612 2 2 0 2 8 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr12~80944407~Nchr12~75292534 intergenic "-," "-," chr12~chr12 80944407 75292534 22 -+ 2.133038 17 5 12 17 56 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr12~80944407~Nchr12~75345673 intergenic "-," "-," chr12~chr12 80944407 75345673 9 -+ 2.043192 9 6 3 9 18 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr12~80945943~Nchr12~75292534 intergenic "-," "-," chr12~chr12 80945943 75292534 2 -+ 0.693147 2 1 1 2 34 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr12~80949407~CBX5 intergenic "-," "CBX5," chr12~chr12 80949407 54639999 4 -- 1.386294 3 2 1 3 478 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr12~80950720~CBX5 intergenic "-," "CBX5," chr12~chr12 80950720 54639999 6 -- 1.56071 6 3 3 6 516 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr12~80953930~CBX5 intergenic "-," "CBX5," chr12~chr12 80953930 54639999 7 -- 1.747868 7 3 4 7 488 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr12~80961638~CBX5 intergenic "-," "CBX5," chr12~chr12 80961638 54639999 18 -- 2.736339 17 9 8 17 544 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr12~80974077~CBX5 intergenic "-," "CBX5," chr12~chr12 80974077 54639996 11 -- 1.972247 10 10 0 10 474 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr12~80974077~CBX5 intergenic "-," "CBX5," chr12~chr12 80974077 54639999 428 -- 2.909487 377 351 24 377 514 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr12~82410365~Nchr12~74551664 intergenic "-," "-," chr12~chr12 82410365 74551664 13 -- 2.138397 7 5 2 7 18 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr12~85817982~BEST3 intergenic "-," "BEST3," chr12~chr12 85817982 70072673 53 +- 2.899008 49 30 19 49 180 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr12~85817982~Nchr12~86078836 intergenic "-," "-," chr12~chr12 85817982 86078836 18 ++ 2.351257 13 7 6 13 98 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr12~86079041~BEST3 intergenic "-," "BEST3," chr12~chr12 86079041 70072673 137 +- 2.868335 127 84 43 127 118 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr12~86079041~BEST3 intergenic "-," "BEST3," chr12~chr12 86079041 70078388 6 +- 1.791759 5 3 2 5 10 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr12~87232443~C12orf26 intergenic "-," "C12orf26," chr12~chr12 87232443 82871060 9 -+ 1.889159 8 6 2 8 30 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr12~87375406~Nchr12~70099784 intergenic "-," "-," chr12~chr12 87375406 70099784 10 +- 2.025326 6 5 1 6 12 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr12~87375406~Nchr12~70109367 intergenic "-," "-," chr12~chr12 87375406 70109367 9 +- 1.464816 4 4 0 4 12 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr12~87436734~Nchr12~87232657 intergenic "-," "-," chr12~chr12 87436734 87232657 13 -- 2.098147 12 6 6 12 16 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr12~88621606~LTA4H intergenic "-," "RP11-256L6.2,LTA4H," chr12~chr12 88621606 96421342 2 -- 0.693147 2 1 1 2 6 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr12~95960825~OSBPL8 intergenic "-," "OSBPL8," chr12~chr12 95960825 76752591 2 -- 0.693147 1 1 0 1 4 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr12~96664772~RP11-256L6.2 intergenic "-," "RP11-256L6.2," chr12~chr12 96664772 96421176 12 ++ 2.094729 12 4 8 12 38 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr14~86401205~AHSA1 intergenic "-," "AHSA1," chr14~chr14 86401205 77925959 6 ++ 1.791759 6 5 1 6 4 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr16~79619777~Nchr16~79246798 intergenic "-," "-," chr16~chr16 79619777 79246798 6 -- 1.011404 6 2 4 6 12 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 7 ++ 1.747868 7 0 7 7 28 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 16 ++ 2.187322 15 4 11 15 26 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151282 14 -- 2.304619 9 3 6 9 18 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 28 -- 2.797252 22 8 14 22 18 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 4 ++ 1.039721 4 2 2 4 26 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr19~31311762~Nchr21~23975088 intergenic "-," "-," chr19~chr21 31311762 23975088 2 -+ 0.693147 2 1 1 2 2 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 10 -+ 2.302585 9 6 3 9 100 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 5 ++ 1.609438 2 2 0 2 20 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr3~115510005~LSAMP intergenic "-," "LSAMP," chr3~chr3 115510005 115725983 4 ++ 1.386294 4 2 2 4 12 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr3~115510005~Nchr3~116073057 intergenic "-," "-," chr3~chr3 115510005 116073057 2 ++ 0.693147 2 0 2 2 6 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr4~4546634~Nchr4~4822133 intergenic "-," "-," chr4~chr4 4546634 4822133 5 ++ 1.332179 5 5 0 5 6 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr5~174660747~TMTC2 intergenic "-," "TMTC2," chr5~chr12 174660747 83225997 8 +- 1.494175 3 3 0 3 18 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr6~139613794~PTTG1 intergenic "-," "PTTG1," chr6~chr5 139613794 159854722 5 ++ 1.332179 5 5 0 5 8 TCGA-3B-A9HS-01A-11R-A39D-07 Nchr6~57575705~Nchr5~21567300 intergenic "-," "-," chr6~chr5 57575705 21567300 2 +- 0.693147 2 0 2 2 2 TCGA-3B-A9HS-01A-11R-A39D-07 NchrX~45212957~NchrX~45461542 intergenic "-," "-," chrX~chrX 45212957 45461542 2 ++ 0.693147 2 2 0 2 10 TCGA-3B-A9HS-01A-11R-A39D-07 PCSK5~DENND1A fusion "PCSK5," "DENND1A," chr9~chr9 78641953 126641300 23 +- 2.002059 15 11 4 15 24 TCGA-3B-A9HS-01A-11R-A39D-07 PEX3~SLC35F1 fusion "PEX3," "SLC35F1," chr6~chr6 143795993 118635191 5 ++ 1.609438 5 5 0 5 28 TCGA-3B-A9HS-01A-11R-A39D-07 PHACTR2~Nchr6~143045935 intergenic "PHACTR2," "-," chr6~chr6 143999346 143045935 2 ++ 0.693147 2 2 0 2 8 TCGA-3B-A9HS-01A-11R-A39D-07 PLXNC1~INSR fusion "PLXNC1," "INSR," chr12~chr19 94694833 7267907 9 +- 1.464816 9 3 6 9 30 TCGA-3B-A9HS-01A-11R-A39D-07 PLXNC1~Nchr6~133991523 intergenic "PLXNC1," "-," chr12~chr6 94580249 133991523 6 ++ 1.56071 6 2 4 6 12 TCGA-3B-A9HS-01A-11R-A39D-07 PLXNC1~Nchr6~134018884 intergenic "PLXNC1," "-," chr12~chr6 94580249 134018884 11 ++ 2.145842 9 5 4 9 28 TCGA-3B-A9HS-01A-11R-A39D-07 PPFIA2~ACSS3 fusion "PPFIA2," "ACSS3," chr12~chr12 81746898 81647086 18 -+ 2.264049 16 8 8 16 44 TCGA-3B-A9HS-01A-11R-A39D-07 PRKCA~RAB40B fusion "PRKCA," "RAB40B," chr17~chr17 64302245 80617533 2 +- 0.693147 2 2 0 2 4 TCGA-3B-A9HS-01A-11R-A39D-07 PRR11~Nchr17~69979756 intergenic "PRR11," "-," chr17~chr17 57247241 69979756 19 ++ 2.506662 19 11 8 19 96 TCGA-3B-A9HS-01A-11R-A39D-07 RARS~Nchr11~13203058 intergenic "RARS," "-," chr5~chr11 167915741 13203058 4 +- 1.386294 4 1 3 4 14 TCGA-3B-A9HS-01A-11R-A39D-07 RARS~Nchr11~13214545 intergenic "RARS," "-," chr5~chr11 167915741 13214545 2 +- 0.693147 2 1 1 2 18 TCGA-3B-A9HS-01A-11R-A39D-07 RP1-101K10.6~Nchr5~158963841 intergenic "RP1-101K10.6," "-," chr6~chr5 153304940 158963841 2 +- 0.693147 2 2 0 2 8 TCGA-3B-A9HS-01A-11R-A39D-07 RP1-34H18.1~Nchr12~88638155 intergenic "RP1-34H18.1," "-," chr12~chr12 77966046 88638155 3 +- 1.098612 3 2 1 3 4 TCGA-3B-A9HS-01A-11R-A39D-07 RP1-34H18.1~Nchr19~31996323 intergenic "RP1-34H18.1," "-," chr12~chr19 77718994 31996323 11 ++ 2.145842 11 4 7 11 24 TCGA-3B-A9HS-01A-11R-A39D-07 RP11-114H23.1~Nchr12~82251344 intergenic "RP11-114H23.1," "-," chr12~chr12 76046206 82251344 3 ++ 1.098612 3 2 1 3 6 TCGA-3B-A9HS-01A-11R-A39D-07 RP11-362K2.2~CPM fusion "RP11-362K2.2," "CPM," chr12~chr12 58937962 69265736 13 +- 2.098147 13 2 11 13 34 TCGA-3B-A9HS-01A-11R-A39D-07 RP11-362K2.2~CPM fusion "RP11-362K2.2," "CPM," chr12~chr12 58937962 69279669 19 +- 2.024404 14 4 10 14 72 TCGA-3B-A9HS-01A-11R-A39D-07 RP11-362K2.2~Nchr12~91635973 intergenic "RP11-362K2.2," "-," chr12~chr12 58937962 91635973 41 ++ 2.78341 33 15 18 33 76 TCGA-3B-A9HS-01A-11R-A39D-07 RP11-362K2.2~Nchr12~91660851 intergenic "RP11-362K2.2," "-," chr12~chr12 58937962 91660851 2 ++ 0.693147 2 0 2 2 264 TCGA-3B-A9HS-01A-11R-A39D-07 RP11-362K2.2~Nchr12~91709233 intergenic "RP11-362K2.2," "-," chr12~chr12 58970761 91709233 2 ++ 0.693147 2 1 1 2 224 TCGA-3B-A9HS-01A-11R-A39D-07 RP11-362K2.2~Nchr12~91709233 intergenic "RP11-362K2.2," "-," chr12~chr12 58937962 91709233 94 ++ 2.726977 89 47 39 89 250 TCGA-3B-A9HS-01A-11R-A39D-07 RP11-362K2.2~Nchr12~91710123 intergenic "RP11-362K2.2," "-," chr12~chr12 58937962 91710123 5 ++ 1.609438 5 2 3 5 70 TCGA-3B-A9HS-01A-11R-A39D-07 RP11-362K2.2~Nchr12~91733324 intergenic "RP11-362K2.2," "-," chr12~chr12 58937962 91733324 13 ++ 2.204785 12 5 7 12 54 TCGA-3B-A9HS-01A-11R-A39D-07 RP11-362K2.2~Nchr12~91756115 intergenic "RP11-362K2.2," "-," chr12~chr12 58937962 91756115 19 ++ 2.479122 17 7 10 17 38 TCGA-3B-A9HS-01A-11R-A39D-07 RP11-445F6.2~PTTG1 fusion "RP11-445F6.2," "PTTG1," chr6~chr5 139592995 159854722 15 ++ 2.02623 14 5 9 14 18 TCGA-3B-A9HS-01A-11R-A39D-07 RP11-54A9.1~Nchr12~78980456 intergenic "RP11-54A9.1," "-," chr12~chr12 76653761 78980456 3 +- 0.636514 3 0 3 3 10 TCGA-3B-A9HS-01A-11R-A39D-07 RWDD1~Nchr12~74551664 intergenic "RWDD1," "-," chr6~chr12 116895334 74551664 5 +- 1.609438 3 1 2 3 56 TCGA-3B-A9HS-01A-11R-A39D-07 RWDD1~Nchr12~74551664 intergenic "RWDD1," "-," chr6~chr12 116892818 74551664 22 +- 2.365773 19 8 11 19 46 TCGA-3B-A9HS-01A-11R-A39D-07 RWDD1~Nchr12~82410461 intergenic "RWDD1," "-," chr6~chr12 116895334 82410461 3 +- 1.098612 2 0 2 2 32 TCGA-3B-A9HS-01A-11R-A39D-07 RWDD1~Nchr12~82410461 intergenic "RWDD1," "-," chr6~chr12 116892818 82410461 14 +- 1.772139 5 2 3 5 26 TCGA-3B-A9HS-01A-11R-A39D-07 SFXN1~LYZ fusion "SFXN1," "LYZ," chr5~chr12 174919270 69746000 14 ++ 2.106577 14 10 4 14 46 TCGA-3B-A9HS-01A-11R-A39D-07 SKA2~Nchr17~68309529 intergenic "SKA2," "-," chr17~chr17 57208642 68309529 13 -- 2.351673 10 6 4 10 12 TCGA-3B-A9HS-01A-11R-A39D-07 SLC35E3~L3MBTL3 fusion "SLC35E3," "RP11-73O6.3,L3MBTL3," chr12~chr6 69153014 130454597 4 ++ 1.386294 4 3 1 4 50 TCGA-3B-A9HS-01A-11R-A39D-07 SLC35E3~L3MBTL3 fusion "SLC35E3," "RP11-73O6.3,L3MBTL3," chr12~chr6 69145970 130454597 16 ++ 1.960095 15 8 7 15 48 TCGA-3B-A9HS-01A-11R-A39D-07 SLC35E3~L3MBTL3 fusion "SLC35E3," "RP11-73O6.3,L3MBTL3," chr12~chr6 69140559 130454597 3 ++ 1.098612 3 2 1 3 2 TCGA-3B-A9HS-01A-11R-A39D-07 SLC35E3~Nchr12~86991390 intergenic "SLC35E3," "-," chr12~chr12 69145970 86991390 3 ++ 1.098612 3 1 2 3 8 TCGA-3B-A9HS-01A-11R-A39D-07 SLC44A2~Nchr12~92140953 intergenic "SLC44A2," "-," chr19~chr12 10748991 92140953 5 ++ 1.609438 4 1 3 4 4 TCGA-3B-A9HS-01A-11R-A39D-07 SMEK1~ITPK1 fusion "SMEK1," "ITPK1," chr14~chr14 91929228 93416394 13 -- 2.458311 13 7 6 13 30 TCGA-3B-A9HS-01A-11R-A39D-07 SMEK1~Nchr12~86055924 intergenic "SMEK1," "-," chr14~chr12 91938013 86055924 5 +- 1.609438 4 3 1 4 2 TCGA-3B-A9HS-01A-11R-A39D-07 TAF13~LYPLA1 fusion "TAF13," "LYPLA1," chr1~chr8 109617609 54967693 3 -- 1.098612 1 0 1 1 8 TCGA-3B-A9HS-01A-11R-A39D-07 TCEB3~Nchr1~86079904 intergenic "TCEB3," "-," chr1~chr1 24076438 86079904 2 ++ 0.693147 2 2 0 2 4 TCGA-3B-A9HS-01A-11R-A39D-07 TCEB3~Nchr1~86080643 intergenic "TCEB3," "-," chr1~chr1 24076438 86080643 48 ++ 2.672352 46 23 23 46 144 TCGA-3B-A9HS-01A-11R-A39D-07 TK1~ENDOV fusion "TK1," "ENDOV," chr17~chr17 76181136 78409933 3 -+ 1.098612 3 0 3 3 12 TCGA-3B-A9HS-01A-11R-A39D-07 TMEM167B~LYPLA1 fusion "TMEM167B," "LYPLA1," chr1~chr8 109635643 54965316 6 +- 1.56071 6 4 2 6 34 TCGA-3B-A9HS-01A-11R-A39D-07 TMEM167B~LYPLA1 fusion "TMEM167B," "LYPLA1," chr1~chr8 109635643 54967693 14 +- 2.242973 11 10 1 11 34 TCGA-3B-A9HS-01A-11R-A39D-07 TMTC3~MGAT4C fusion "TMTC3," "MGAT4C," chr12~chr12 88570096 86557263 8 +- 2.079442 8 3 5 8 12 TCGA-3B-A9HS-01A-11R-A39D-07 TMTC3~MGAT4C fusion "TMTC3," "MGAT4C," chr12~chr12 88570096 86561354 13 +- 2.351673 13 3 10 13 52 TCGA-3B-A9HS-01A-11R-A39D-07 TMTC3~MGAT4C fusion "TMTC3," "MGAT4C," chr12~chr12 88570096 86562515 5 +- 1.609438 5 2 3 5 4 TCGA-3B-A9HS-01A-11R-A39D-07 TMTC3~OSBPL8 fusion "TMTC3," "OSBPL8," chr12~chr12 88570096 76752591 3 +- 1.098612 3 2 1 3 22 TCGA-3B-A9HS-01A-11R-A39D-07 TRHDE~ZNF266 fusion "TRHDE," "ZNF266," chr12~chr19 72969322 9530894 2 +- 0.693147 2 1 1 2 2 TCGA-3B-A9HS-01A-11R-A39D-07 TSPAN8~OSBPL8 fusion "TSPAN8," "OSBPL8," chr12~chr12 71551399 76752591 14 -- 2.106577 14 5 9 14 14 TCGA-3B-A9HS-01A-11R-A39D-07 TTC1~Nchr12~82608437 intergenic "TTC1," "-," chr5~chr12 159470176 82608437 3 ++ 1.098612 2 1 1 2 12 TCGA-3B-A9HS-01A-11R-A39D-07 TTC1~Nchr12~82611354 intergenic "TTC1," "-," chr5~chr12 159470176 82611354 3 ++ 1.098612 3 1 2 3 8 TCGA-3B-A9HS-01A-11R-A39D-07 TTLL5~Nchr14~87500039 intergenic "TTLL5," "-," chr14~chr14 76187046 87500039 49 +- 2.624809 49 22 27 49 156 TCGA-3B-A9HS-01A-11R-A39D-07 TTLL5~Nchr14~87500039 intergenic "TTLL5," "-," chr14~chr14 76186169 87500039 50 +- 3.021484 49 28 21 49 86 TCGA-3B-A9HS-01A-11R-A39D-07 TXLNB~Nchr21~23920980 intergenic "TXLNB," "-," chr6~chr21 139565732 23920980 4 -- 1.386294 4 2 2 4 6 TCGA-3B-A9HS-01A-11R-A39D-07 UNK~SPOP fusion "UNK," "SPOP," chr17~chr17 73781065 47700238 5 +- 1.332179 5 1 4 5 26 TCGA-3B-A9HS-01A-11R-A39D-07 USP16~ACSS3 fusion "USP16," "ACSS3," chr21~chr12 30397098 81545623 26 ++ 2.5247 22 9 13 22 90 TCGA-3B-A9HS-01A-11R-A39D-07 USP16~Nchr12~76598852 intergenic "USP16," "-," chr21~chr12 30397098 76598852 4 ++ 1.039721 2 1 1 2 8 TCGA-3B-A9HS-01A-11R-A39D-07 VAV2~RP11-281A20.1 fusion "VAV2," "RP11-281A20.1," chr9~chr9 136641150 120632505 9 -- 1.889159 9 3 6 9 8 TCGA-3B-A9HS-01A-11R-A39D-07 VIPAR~Nchr14~86473524 intergenic "VIPAR," "-," chr14~chr14 77919642 86473524 4 -- 1.386294 4 2 2 4 6 TCGA-3B-A9HS-01A-11R-A39D-07 WSB2~Nchr12~131959003 intergenic "WSB2," "-," chr12~chr12 118498841 131959003 4 -- 1.386294 4 0 4 4 12 TCGA-3B-A9HS-01A-11R-A39D-07 XRCC6BP1~TMTC2 fusion "XRCC6BP1," "TMTC2," chr12~chr12 58347472 83315313 5 ++ 1.332179 5 3 2 5 2 TCGA-3B-A9HS-01A-11R-A39D-07 YEATS4~Nchr12~77724262 intergenic "YEATS4," "-," chr12~chr12 69764755 77724262 5 +- 1.609438 4 1 3 4 6 TCGA-3B-A9HS-01A-11R-A39D-07 ZNF557~ACSS3 fusion "ZNF557," "ACSS3," chr19~chr12 7070664 81610680 6 ++ 1.791759 3 1 2 3 8 TCGA-3B-A9HS-01A-11R-A39D-07 ZNF557~Nchr12~74016750 intergenic "ZNF557," "-," chr19~chr12 7070664 74016750 122 +- 2.712921 129 48 69 129 584 TCGA-3B-A9HS-01A-11R-A39D-07 ZNF557~Nchr12~77838590 intergenic "ZNF557," "-," chr19~chr12 7070664 77838590 8 +- 1.906155 6 1 5 6 22 TCGA-3B-A9HS-01A-11R-A39D-07 ZNF557~TCHP fusion "ZNF557," "TCHP," chr19~chr12 7070664 110418710 5 ++ 1.332179 4 2 2 4 8 TCGA-3B-A9HS-01A-11R-A39D-07 ZNF91~Nchr19~23243120 intergenic "ZNF91," "-," chr19~chr19 23578127 23243120 5 -- 1.332179 5 1 4 5 32 TCGA-3B-A9HS-01A-11R-A39D-07 ZZZ3~Nchr1~79327843 intergenic "ZZZ3," "-," chr1~chr1 78148947 79327843 10 -+ 1.643418 10 5 5 10 38 TCGA-Z4-AAPG-01A-11R-A39D-07 ATP8B4~Nchr15~89317567 intergenic "ATP8B4," "-," chr15~chr15 50254174 89317567 10 -+ 2.163956 10 3 7 10 12 TCGA-Z4-AAPG-01A-11R-A39D-07 C9orf82~Nchr17~5502352 intergenic "C9orf82," "-," chr9~chr17 26884808 5502352 3 -+ 1.098612 3 2 1 3 2 TCGA-Z4-AAPG-01A-11R-A39D-07 CACNA1C~Nchr12~2470703 intergenic "CACNA1C," "-," chr12~chr12 2229596 2470703 3 ++ 0.636514 3 0 3 3 2 TCGA-Z4-AAPG-01A-11R-A39D-07 FIP1L1~USP8 fusion "PDGFRA,FIP1L1," "USP8," chr4~chr15 55156721 50751197 23 ++ 2.547531 17 5 12 17 122 TCGA-Z4-AAPG-01A-11R-A39D-07 GABPB1~Nchr4~55415718 intergenic "GABPB1," "-," chr15~chr4 50647182 55415718 3 -+ 1.098612 3 2 1 3 12 TCGA-Z4-AAPG-01A-11R-A39D-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 104 -- 2.041406 104 104 0 104 46 TCGA-Z4-AAPG-01A-11R-A39D-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32487941 32548633 53 -- 2.151529 10 0 10 10 12 TCGA-Z4-AAPG-01A-11R-A39D-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32497902 32525963 205 -- 2.207706 31 11 20 31 2 TCGA-Z4-AAPG-01A-11R-A39D-07 NFX1~RP11-326F20.5 fusion "NFX1," "RP11-326F20.5," chr9~chr9 33319125 33177418 52 ++ 2.856352 50 26 24 50 138 TCGA-Z4-AAPG-01A-11R-A39D-07 NFX1~RP11-326F20.5 fusion "NFX1," "RP11-326F20.5," chr9~chr9 33319125 33178894 4 ++ 1.039721 4 0 4 4 52 TCGA-Z4-AAPG-01A-11R-A39D-07 Nchr11~27603245~RPS25 intergenic "-," "RPS25," chr11~chr11 27603245 118889038 15 -- 2.02623 14 2 12 14 228 TCGA-Z4-AAPG-01A-11R-A39D-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 103 -+ 2.593823 52 0 52 52 68 TCGA-Z4-AAPG-01A-11R-A39D-07 Nchr12~11343026~Nchr12~11652882 intergenic "-," "-," chr12~chr12 11343026 11652882 2 ++ 0.693147 2 1 1 2 2 TCGA-Z4-AAPG-01A-11R-A39D-07 Nchr14~28125649~Nchr14~27791347 intergenic "-," "-," chr14~chr14 28125649 27791347 3 -- 1.098612 3 3 0 3 2 TCGA-Z4-AAPG-01A-11R-A39D-07 Nchr17~14608784~Nchr17~14608880 intergenic "-," "-," chr17~chr17 14608784 14608880 4 -- 1.386294 1 0 1 1 2 TCGA-Z4-AAPG-01A-11R-A39D-07 Nchr18~2111645~Nchr18~1906647 intergenic "-," "-," chr18~chr18 2111645 1906647 6 -- 1.791759 5 4 1 5 4 TCGA-Z4-AAPG-01A-11R-A39D-07 Nchr18~2126201~Nchr18~1906647 intergenic "-," "-," chr18~chr18 2126201 1906647 5 -- 1.609438 5 2 3 5 2 TCGA-Z4-AAPG-01A-11R-A39D-07 Nchr18~2126201~Nchr18~1923087 intergenic "-," "-," chr18~chr18 2126201 1923087 2 -- 0.693147 1 0 1 1 4 TCGA-Z4-AAPG-01A-11R-A39D-07 Nchr18~2239793~Nchr18~2035148 intergenic "-," "-," chr18~chr18 2239793 2035148 9 -- 1.735126 9 6 3 9 24 TCGA-Z4-AAPG-01A-11R-A39D-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 4 ++ 1.039721 4 1 3 4 50 TCGA-Z4-AAPG-01A-11R-A39D-07 Nchr19~17622152~Nchr10~8635503 intergenic "-," "-," chr19~chr10 17622152 8635503 24 -+ 2.535025 24 10 14 24 36 TCGA-Z4-AAPG-01A-11R-A39D-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 41 -+ 2.857634 39 27 12 39 280 TCGA-Z4-AAPG-01A-11R-A39D-07 Nchr1~147775638~RP11-495P10.6 intergenic "-," "RP11-495P10.6," chr1~chr1 147775638 147744165 4 +- 1.386294 4 0 4 4 10 TCGA-Z4-AAPG-01A-11R-A39D-07 Nchr1~147775638~RP11-495P10.6 intergenic "-," "RP11-495P10.6," chr1~chr1 147775638 147745213 2 +- 0.693147 2 1 1 2 22 TCGA-Z4-AAPG-01A-11R-A39D-07 Nchr1~147775662~RP11-495P10.6 intergenic "-," "RP11-495P10.6," chr1~chr1 147775662 147744165 10 +- 1.973001 10 2 8 10 18 TCGA-Z4-AAPG-01A-11R-A39D-07 Nchr1~147775662~RP11-495P10.6 intergenic "-," "RP11-495P10.6," chr1~chr1 147775662 147745213 5 +- 1.609438 4 1 3 4 30 TCGA-Z4-AAPG-01A-11R-A39D-07 Nchr20~6302908~Nchr20~6549277 intergenic "-," "-," chr20~chr20 6302908 6549277 3 ++ 1.098612 2 2 0 2 12 TCGA-Z4-AAPG-01A-11R-A39D-07 Nchr21~45906113~CDV3 intergenic "-," "CDV3," chr21~chr3 45906113 133302846 7 ++ 1.747868 7 5 2 7 18 TCGA-Z4-AAPG-01A-11R-A39D-07 Nchr2~177065929~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065929 177065788 4 ++ 1.386294 4 0 4 4 26 TCGA-Z4-AAPG-01A-11R-A39D-07 Nchr2~81709228~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81709228 82075877 5 ++ 1.332179 5 4 1 5 34 TCGA-Z4-AAPG-01A-11R-A39D-07 Nchr2~81775871~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81775871 82075877 14 ++ 2.205598 8 3 5 8 36 TCGA-Z4-AAPG-01A-11R-A39D-07 Nchr4~167120165~RP11-217C7.1 intergenic "-," "RP11-217C7.1," chr4~chr4 167120165 167371790 3 ++ 1.098612 3 0 3 3 6 TCGA-Z4-AAPG-01A-11R-A39D-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 2 -- 0.693147 2 2 0 2 2 TCGA-Z4-AAPG-01A-11R-A39D-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 10 ++ 1.695743 9 9 0 9 4 TCGA-Z4-AAPG-01A-11R-A39D-07 Nchr9~33624554~Nchr9~33624733 intergenic "-," "-," chr9~chr9 33624554 33624733 2 -- 0.693147 2 2 0 2 4 TCGA-Z4-AAPG-01A-11R-A39D-07 Nchr9~33624650~Nchr9~33624745 intergenic "-," "-," chr9~chr9 33624650 33624745 2 -- 0.693147 2 2 0 2 2 TCGA-Z4-AAPG-01A-11R-A39D-07 PTTG1IP~CTD-2022H16.1 fusion "PTTG1IP," "CTD-2022H16.1," chr21~chr15 46281078 30360657 4 -- 1.039721 3 0 3 3 4 TCGA-Z4-AAPG-01A-11R-A39D-07 RP11-328J2.1~Nchr7~119100748 intergenic "RP11-328J2.1," "-," chr7~chr7 119422338 119100748 5 -- 1.609438 4 4 0 4 2 TCGA-Z4-AAPG-01A-11R-A39D-07 RP11-742B18.1~SPARCL1 fusion "RP11-742B18.1," "SPARCL1," chr4~chr4 88651515 88420737 4 -- 1.386294 4 2 2 4 18 TCGA-Z4-AAPG-01A-11R-A39D-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 7 ++ 1.549826 6 4 2 6 6 TCGA-Z4-AAPG-01A-11R-A39D-07 RPS8~Nchr5~33162461 intergenic "RPS8," "-," chr1~chr5 45242437 33162461 2 ++ 0.693147 1 1 0 1 64 TCGA-Z4-AAPG-01A-11R-A39D-07 TPT1~Nchr6~144522012 intergenic "TPT1," "-," chr13~chr6 45914301 144522012 12 -- 0.721464 10 10 0 10 10 TCGA-Z4-AAPF-01A-11R-A39D-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 88 -- 2.442658 88 88 0 88 18 TCGA-Z4-AAPF-01A-11R-A39D-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 41 -+ 2.261508 25 0 25 25 28 TCGA-Z4-AAPF-01A-11R-A39D-07 Nchr12~113828500~Nchr12~113828717 intergenic "-," "-," chr12~chr12 113828500 113828717 2 -- 0.693147 2 0 2 2 2 TCGA-Z4-AAPF-01A-11R-A39D-07 Nchr12~127650888~Nchr9~79186700 intergenic "-," "-," chr12~chr9 127650888 79186700 2 -- 0.693147 1 1 0 1 154 TCGA-Z4-AAPF-01A-11R-A39D-07 Nchr15~70878214~Nchr15~70423230 intergenic "-," "-," chr15~chr15 70878214 70423230 10 -- 1.886697 9 3 6 9 8 TCGA-Z4-AAPF-01A-11R-A39D-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 2 ++ 0.693147 2 1 1 2 4 TCGA-Z4-AAPF-01A-11R-A39D-07 Nchr1~569174~DES intergenic "-," "DES," chr1~chr2 569174 220291284 2 -+ 0.693147 2 2 0 2 6 TCGA-Z4-AAPF-01A-11R-A39D-07 Nchr3~115510005~LSAMP intergenic "-," "LSAMP," chr3~chr3 115510005 115725983 3 ++ 0.636514 3 0 3 3 2 TCGA-Z4-AAPF-01A-11R-A39D-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 3 -- 1.098612 2 2 0 2 6 TCGA-Z4-AAPF-01A-11R-A39D-07 NchrX~64295792~NchrX~64586518 intergenic "-," "-," chrX~chrX 64295792 64586518 3 ++ 1.098612 3 1 2 3 2 TCGA-Z4-AAPF-01A-11R-A39D-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 9 ++ 1.522955 9 4 5 9 6 TCGA-Z4-AAPF-01A-11R-A39D-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 16 +- 1.160186 16 0 16 16 2 TCGA-Z4-AAPF-01A-11R-A39D-07 TNRC6B~Nchr12~33177226 intergenic "TNRC6B," "-," chr22~chr12 40697337 33177226 11 +- 2.019815 11 6 5 11 12 TCGA-DX-AB2Q-01A-11R-A39D-07 ADAM5P~Nchr8~37953299 intergenic "ADAM5P," "-," chr8~chr8 39260375 37953299 5 ++ 1.609438 4 3 1 4 6 TCGA-DX-AB2Q-01A-11R-A39D-07 ADAM9~ADAM5P fusion "ADAM9," "ADAM5P," chr8~chr8 38854679 39238308 17 ++ 2.67012 17 10 7 17 68 TCGA-DX-AB2Q-01A-11R-A39D-07 ADAM9~ADAM5P fusion "ADAM9," "ADAM5P," chr8~chr8 38854679 39258852 3 ++ 1.098612 2 1 1 2 2 TCGA-DX-AB2Q-01A-11R-A39D-07 ANKRD11~SYT15 fusion "ANKRD11," "SYT15," chr16~chr10 89556653 46969386 36 -- 2.500194 36 36 0 36 28 TCGA-DX-AB2Q-01A-11R-A39D-07 BCAS3~SYTL2 fusion "BCAS3," "SYTL2," chr17~chr11 59161925 85425550 6 +- 1.242453 6 2 4 6 4 TCGA-DX-AB2Q-01A-11R-A39D-07 C10orf72~Nchr16~89030339 intergenic "C10orf72," "-," chr10~chr16 50294000 89030339 2 -+ 0.693147 1 1 0 1 4 TCGA-DX-AB2Q-01A-11R-A39D-07 C11orf70~Nchr11~104946721 intergenic "C11orf70," "-," chr11~chr11 101952012 104946721 3 ++ 0.636514 3 1 2 3 10 TCGA-DX-AB2Q-01A-11R-A39D-07 C11orf70~Nchr11~104946721 intergenic "C11orf70," "-," chr11~chr11 101946776 104946721 4 ++ 1.039721 4 1 3 4 4 TCGA-DX-AB2Q-01A-11R-A39D-07 CELF1~Nchr8~6669860 intergenic "CELF1," "-," chr11~chr8 47493743 6669860 10 -- 1.418484 10 5 5 10 34 TCGA-DX-AB2Q-01A-11R-A39D-07 CHD6~MYH7B fusion "CHD6," "MYH7B," chr20~chr20 40068640 33583139 4 -+ 1.039721 4 1 3 4 8 TCGA-DX-AB2Q-01A-11R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264376 94038082 2 -+ 0.693147 1 1 0 1 6 TCGA-DX-AB2Q-01A-11R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266881 94039751 4 -+ 0.562335 1 1 0 1 4 TCGA-DX-AB2Q-01A-11R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267040 94042395 2 -+ 0.693147 1 1 0 1 10 TCGA-DX-AB2Q-01A-11R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272410 94055769 2 -+ 0.693147 2 1 1 2 8 TCGA-DX-AB2Q-01A-11R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94045815 48265317 3 +- 1.098612 3 1 2 3 10 TCGA-DX-AB2Q-01A-11R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94056607 48270054 3 +- 0.636514 1 0 1 1 4 TCGA-DX-AB2Q-01A-11R-A39D-07 CTTN~PPFIA1 fusion "CTTN," "PPFIA1," chr11~chr11 70244720 70189775 42 ++ 2.671061 38 37 1 38 34 TCGA-DX-AB2Q-01A-11R-A39D-07 DDAH1~RP11-458D21.1 fusion "DDAH1," "RP11-458D21.1," chr1~chr1 85987044 145378902 7 -- 1.747868 7 4 3 7 4 TCGA-DX-AB2Q-01A-11R-A39D-07 DNMBP~RFWD2 fusion "DNMBP," "RFWD2," chr10~chr1 101769595 176085817 2 -- 0.693147 2 2 0 2 18 TCGA-DX-AB2Q-01A-11R-A39D-07 DNMBP~RFWD2 fusion "DNMBP," "RFWD2," chr10~chr1 101769595 176104222 5 -- 1.609438 5 3 2 5 22 TCGA-DX-AB2Q-01A-11R-A39D-07 EIF1~Nchr17~21163258 intergenic "EIF1," "-," chr17~chr17 39847063 21163258 6 ++ 0.867563 6 0 6 6 12 TCGA-DX-AB2Q-01A-11R-A39D-07 ENO1~Nchr1~236648076 intergenic "ENO1," "-," chr1~chr1 8921250 236648076 2 -- 0.693147 2 2 0 2 2 TCGA-DX-AB2Q-01A-11R-A39D-07 FAM38A~Nchr10~50412838 intergenic "FAM38A," "-," chr16~chr10 88798114 50412838 3 -- 1.098612 3 2 1 3 16 TCGA-DX-AB2Q-01A-11R-A39D-07 FAM38A~Nchr10~50414698 intergenic "FAM38A," "-," chr16~chr10 88798114 50414698 2 -- 0.693147 2 2 0 2 4 TCGA-DX-AB2Q-01A-11R-A39D-07 FAM38A~Nchr10~50415163 intergenic "FAM38A," "-," chr16~chr10 88798114 50415163 79 -- 2.797833 77 45 31 77 290 TCGA-DX-AB2Q-01A-11R-A39D-07 GAPDH~NchrX~46299827 intergenic "GAPDH," "-," chr12~chrX 6646369 46299827 10 -- 1.359237 2 2 0 2 4 TCGA-DX-AB2Q-01A-11R-A39D-07 GPC6~Nchr13~94907883 intergenic "GPC6," "-," chr13~chr13 94680148 94907883 2 ++ 0.693147 2 0 2 2 4 TCGA-DX-AB2Q-01A-11R-A39D-07 HN1~Nchr2~174296244 intergenic "HN1," "-," chr17~chr2 73143651 174296244 27 -- 1.310784 8 8 0 8 2 TCGA-DX-AB2Q-01A-11R-A39D-07 ITFG1~Nchr16~34739785 intergenic "ITFG1," "-," chr16~chr16 47252779 34739785 2 -- 0.693147 2 0 2 2 8 TCGA-DX-AB2Q-01A-11R-A39D-07 ITFG1~Nchr16~34760533 intergenic "ITFG1," "-," chr16~chr16 47252779 34760533 8 -- 1.667462 8 4 4 8 132 TCGA-DX-AB2Q-01A-11R-A39D-07 ITFG1~Nchr16~34760554 intergenic "ITFG1," "-," chr16~chr16 47252779 34760554 34 -- 3.031685 34 18 16 34 156 TCGA-DX-AB2Q-01A-11R-A39D-07 NRIP1~AF127936.7 fusion "NRIP1," "AF127936.7," chr21~chr21 16437066 16230029 2 -- 0.693147 2 2 0 2 8 TCGA-DX-AB2Q-01A-11R-A39D-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 60 -+ 2.577884 33 0 32 33 46 TCGA-DX-AB2Q-01A-11R-A39D-07 Nchr12~104659073~Nchr12~104659181 intergenic "-," "-," chr12~chr12 104659073 104659181 2 -- 0.693147 2 2 0 2 22 TCGA-DX-AB2Q-01A-11R-A39D-07 Nchr12~43243319~Nchr12~43446586 intergenic "-," "-," chr12~chr12 43243319 43446586 3 ++ 1.098612 2 0 2 2 2 TCGA-DX-AB2Q-01A-11R-A39D-07 Nchr14~58283422~SLC35F4 intergenic "-," "SLC35F4," chr14~chr14 58283422 58060842 13 -- 1.991509 12 2 10 12 24 TCGA-DX-AB2Q-01A-11R-A39D-07 Nchr14~90085372~FOXN3 intergenic "-," "FOXN3," chr14~chr14 90085372 89878834 3 -- 1.098612 2 1 1 2 12 TCGA-DX-AB2Q-01A-11R-A39D-07 Nchr15~21905473~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21905473 20876597 10 -- 1.834372 10 3 7 10 48 TCGA-DX-AB2Q-01A-11R-A39D-07 Nchr15~21905477~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21905477 20876597 20 -- 2.622996 19 4 15 19 50 TCGA-DX-AB2Q-01A-11R-A39D-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 9 ++ 2.043192 9 3 6 9 12 TCGA-DX-AB2Q-01A-11R-A39D-07 Nchr17~22069241~NBEA intergenic "-," "NBEA," chr17~chr13 22069241 35683427 4 -+ 0.562335 4 4 0 4 2 TCGA-DX-AB2Q-01A-11R-A39D-07 Nchr17~22069241~Nchr15~20876597 intergenic "-," "-," chr17~chr15 22069241 20876597 6 -- 1.791759 4 4 0 4 6 TCGA-DX-AB2Q-01A-11R-A39D-07 Nchr19~55897296~RPL28 intergenic "-," "RPL28," chr19~chr19 55897296 55899396 2 -+ 0.693147 1 1 0 1 24 TCGA-DX-AB2Q-01A-11R-A39D-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 59 -+ 3.014191 54 31 22 54 434 TCGA-DX-AB2Q-01A-11R-A39D-07 Nchr21~17603435~C21orf37 intergenic "-," "C21orf37," chr21~chr21 17603435 18821183 10 ++ 2.163956 4 0 4 4 6 TCGA-DX-AB2Q-01A-11R-A39D-07 Nchr21~9827382~Nchr21~9827481 intergenic "-," "-," chr21~chr21 9827382 9827481 3 -- 1.098612 3 3 0 3 4 TCGA-DX-AB2Q-01A-11R-A39D-07 Nchr2~177065929~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065929 177065788 4 ++ 1.386294 4 0 4 4 24 TCGA-DX-AB2Q-01A-11R-A39D-07 Nchr2~194367724~Nchr2~194708314 intergenic "-," "-," chr2~chr2 194367724 194708314 4 ++ 1.386294 3 1 2 3 8 TCGA-DX-AB2Q-01A-11R-A39D-07 Nchr2~81775871~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81775871 82075877 6 ++ 1.791759 4 1 3 4 12 TCGA-DX-AB2Q-01A-11R-A39D-07 Nchr3~183867707~Nchr3~183867835 intergenic "-," "-," chr3~chr3 183867707 183867835 2 -- 0.693147 1 0 1 1 6 TCGA-DX-AB2Q-01A-11R-A39D-07 Nchr3~8536367~Nchr3~8245384 intergenic "-," "-," chr3~chr3 8536367 8245384 2 -- 0.693147 2 1 1 2 2 TCGA-DX-AB2Q-01A-11R-A39D-07 Nchr4~154926613~Nchr4~155128120 intergenic "-," "-," chr4~chr4 154926613 155128120 9 ++ 1.889159 6 5 1 6 24 TCGA-DX-AB2Q-01A-11R-A39D-07 Nchr7~84509600~Nchr7~84291238 intergenic "-," "-," chr7~chr7 84509600 84291238 7 -- 1.549826 7 2 5 7 24 TCGA-DX-AB2Q-01A-11R-A39D-07 OXNAD1~Nchr9~82600279 intergenic "OXNAD1," "-," chr3~chr9 16313229 82600279 41 +- 2.613441 40 30 10 40 70 TCGA-DX-AB2Q-01A-11R-A39D-07 OXNAD1~Nchr9~82620444 intergenic "OXNAD1," "-," chr3~chr9 16313229 82620444 7 +- 1.747868 7 4 3 7 4 TCGA-DX-AB2Q-01A-11R-A39D-07 RP1-34H18.1~NAV3 fusion "RP1-34H18.1," "NAV3," chr12~chr12 77966046 78334099 2 ++ 0.693147 2 2 0 2 10 TCGA-DX-AB2Q-01A-11R-A39D-07 RP11-284G10.1~Nchr9~118016672 intergenic "RP11-284G10.1," "-," chr9~chr9 118503741 118016672 32 -- 2.837148 31 19 12 31 46 TCGA-DX-AB2Q-01A-11R-A39D-07 RP11-284G10.1~Nchr9~118238124 intergenic "RP11-284G10.1," "-," chr9~chr9 118503741 118238124 5 -- 1.609438 2 1 1 2 2 TCGA-DX-AB2Q-01A-11R-A39D-07 RP11-594N15.2~Nchr8~79081296 intergenic "RP11-594N15.2," "-," chr8~chr8 79343091 79081296 4 -- 1.386294 3 2 1 3 4 TCGA-DX-AB2Q-01A-11R-A39D-07 RP11-725K16.4~Nchr11~102919143 intergenic "RP11-725K16.4," "-," chr11~chr11 102703637 102919143 14 ++ 2.304619 11 7 4 11 46 TCGA-DX-AB2Q-01A-11R-A39D-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 7 ++ 1.747868 5 4 1 5 16 TCGA-DX-AB2Q-01A-11R-A39D-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 6 +- 0.693147 5 0 5 5 4 TCGA-DX-AB2Q-01A-11R-A39D-07 TMEM2~Nchr9~74088725 intergenic "TMEM2," "-," chr9~chr9 74324175 74088725 3 -- 0.636514 2 1 1 2 10 TCGA-DX-AB2Q-01A-11R-A39D-07 TTC17~Nchr11~71036482 intergenic "TTC17," "-," chr11~chr11 43380663 71036482 3 ++ 1.098612 3 3 0 3 6 TCGA-DX-AB2Q-01A-11R-A39D-07 TTC17~Nchr11~71036775 intergenic "TTC17," "-," chr11~chr11 43380663 71036775 5 ++ 1.609438 5 5 0 5 12 TCGA-DX-AB2Q-01A-11R-A39D-07 TUSC3~Nchr9~13556359 intergenic "TUSC3," "-," chr8~chr9 15398077 13556359 3 +- 1.098612 3 3 0 3 2 TCGA-DX-AB2Q-01A-11R-A39D-07 TUSC3~Nchr9~13739619 intergenic "TUSC3," "-," chr8~chr9 15398077 13739619 4 +- 1.039721 3 1 2 3 6 TCGA-DX-AB2Q-01A-11R-A39D-07 WHSC1L1~Nchr21~17594620 intergenic "WHSC1L1," "-," chr8~chr21 38176413 17594620 6 -+ 1.56071 4 3 1 4 6 TCGA-DX-AB2Q-01A-11R-A39D-07 WHSC1L1~Nchr21~17603376 intergenic "WHSC1L1," "-," chr8~chr21 38176413 17603376 19 -+ 2.652588 9 0 9 9 10 TCGA-DX-AB2O-01A-12R-A39D-07 AC074363.1~AC010884.1 fusion "AC074363.1," "AC010884.1," chr2~chr2 168149844 105561535 12 +- 1.979205 11 9 2 11 22 TCGA-DX-AB2O-01A-12R-A39D-07 AC074363.1~Nchr2~105655074 intergenic "AC074363.1," "-," chr2~chr2 168149844 105655074 15 +- 2.430791 10 9 1 10 18 TCGA-DX-AB2O-01A-12R-A39D-07 AFAP1~Nchr4~13526087 intergenic "AFAP1," "-," chr4~chr4 7774547 13526087 3 -- 1.098612 2 1 1 2 2 TCGA-DX-AB2O-01A-12R-A39D-07 AFAP1~Nchr4~8900382 intergenic "AFAP1," "-," chr4~chr4 7870349 8900382 4 -- 1.56071 6 2 2 6 24 TCGA-DX-AB2O-01A-12R-A39D-07 AFAP1~Nchr4~8930261 intergenic "AFAP1," "-," chr4~chr4 7870349 8930261 8 -- 1.559581 8 4 4 8 34 TCGA-DX-AB2O-01A-12R-A39D-07 ARAP1~Nchr10~57486399 intergenic "ARAP1," "-," chr11~chr10 72437665 57486399 2 -+ 0.693147 1 1 0 1 4 TCGA-DX-AB2O-01A-12R-A39D-07 ARGLU1~Nchr13~110482639 intergenic "ARGLU1," "-," chr13~chr13 107211780 110482639 11 -+ 2.019815 11 8 3 11 40 TCGA-DX-AB2O-01A-12R-A39D-07 ARGLU1~Nchr13~110487458 intergenic "ARGLU1," "-," chr13~chr13 107211780 110487458 6 -+ 1.791759 6 5 1 6 22 TCGA-DX-AB2O-01A-12R-A39D-07 ARGLU1~Nchr13~110510201 intergenic "ARGLU1," "-," chr13~chr13 107211780 110510201 2 -+ 0.693147 2 1 1 2 14 TCGA-DX-AB2O-01A-12R-A39D-07 ASH2L~Nchr4~36784412 intergenic "ASH2L," "-," chr8~chr4 37968351 36784412 2 +- 0.693147 2 0 2 2 2 TCGA-DX-AB2O-01A-12R-A39D-07 C1orf137~Nchr1~88018383 intergenic "C1orf137," "-," chr1~chr1 117237477 88018383 5 ++ 1.609438 2 2 0 2 6 TCGA-DX-AB2O-01A-12R-A39D-07 C1orf137~Nchr8~15087945 intergenic "C1orf137," "-," chr1~chr8 117248626 15087945 2 ++ 0.693147 2 1 1 2 4 TCGA-DX-AB2O-01A-12R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48268777 94047828 2 -+ 0.693147 2 1 1 2 4 TCGA-DX-AB2O-01A-12R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48270358 94049718 2 -+ 0.693147 2 2 0 2 8 TCGA-DX-AB2O-01A-12R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48267688 189856240 4 -+ 1.386294 4 1 3 4 2 TCGA-DX-AB2O-01A-12R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48264880 189863008 6 -+ 0.450561 5 4 1 5 6 TCGA-DX-AB2O-01A-12R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266738 189868137 5 -+ 1.609438 2 1 1 2 4 TCGA-DX-AB2O-01A-12R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265891 189868137 2 -+ 0.693147 1 1 0 1 4 TCGA-DX-AB2O-01A-12R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268178 189870076 7 -+ 0.410116 6 6 0 6 10 TCGA-DX-AB2O-01A-12R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48271790 189870095 6 -+ 1.011404 4 3 1 4 8 TCGA-DX-AB2O-01A-12R-A39D-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94047045 189864269 2 ++ 0.693147 1 0 1 1 4 TCGA-DX-AB2O-01A-12R-A39D-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189864577 94045736 3 ++ 1.098612 3 1 2 3 2 TCGA-DX-AB2O-01A-12R-A39D-07 DPYSL2~FSTL5 fusion "DPYSL2," "FSTL5," chr8~chr4 26441499 162508727 9 +- 1.889159 4 0 4 4 34 TCGA-DX-AB2O-01A-12R-A39D-07 DPYSL2~HMBOX1 fusion "DPYSL2," "HMBOX1," chr8~chr8 26441499 28835692 4 ++ 1.386294 4 4 0 4 2 TCGA-DX-AB2O-01A-12R-A39D-07 DPYSL2~HMBOX1 fusion "DPYSL2," "HMBOX1," chr8~chr8 26441499 28837588 71 ++ 3.109176 50 46 4 50 156 TCGA-DX-AB2O-01A-12R-A39D-07 ERO1L~Nchr14~23224773 intergenic "ERO1L," "-," chr14~chr14 53145152 23224773 2 -+ 1.098612 3 2 0 3 94 TCGA-DX-AB2O-01A-12R-A39D-07 EVC~ZDHHC2 fusion "EVC," "ZDHHC2," chr4~chr8 5789351 17065469 112 ++ 3.031399 105 72 31 105 100 TCGA-DX-AB2O-01A-12R-A39D-07 EVC~ZDHHC2 fusion "EVC," "ZDHHC2," chr4~chr8 5789351 17065527 2 ++ 0.693147 1 0 1 1 90 TCGA-DX-AB2O-01A-12R-A39D-07 FAM60A~Nchr12~39407380 intergenic "FAM60A," "-," chr12~chr12 31478958 39407380 4 -+ 1.039721 4 3 1 4 8 TCGA-DX-AB2O-01A-12R-A39D-07 FGGY~Nchr2~167403343 intergenic "FGGY," "-," chr1~chr2 59844509 167403343 2 ++ 0.693147 2 1 1 2 8 TCGA-DX-AB2O-01A-12R-A39D-07 FOXJ3~RCOR1 fusion "FOXJ3," "RCOR1," chr1~chr14 42730786 103187344 5 -+ 1.609438 5 2 3 5 22 TCGA-DX-AB2O-01A-12R-A39D-07 FSTL5~Nchr8~27721506 intergenic "FSTL5," "-," chr4~chr8 162508607 27721506 90 -+ 3.010289 64 20 44 64 178 TCGA-DX-AB2O-01A-12R-A39D-07 FSTL5~RP11-597M17.1 fusion "FSTL5," "RP11-597M17.1," chr4~chr8 162508607 27766507 13 -+ 2.458311 8 1 7 8 26 TCGA-DX-AB2O-01A-12R-A39D-07 FSTL5~RP11-597M17.1 fusion "FSTL5," "RP11-597M17.1," chr4~chr8 162508607 27767701 3 -+ 1.098612 1 1 0 1 16 TCGA-DX-AB2O-01A-12R-A39D-07 GNPTAB~CCDC60 fusion "GNPTAB," "CCDC60," chr12~chr12 102224337 119926564 6 -+ 1.56071 6 2 4 6 26 TCGA-DX-AB2O-01A-12R-A39D-07 GNPTAB~CCDC60 fusion "GNPTAB," "CCDC60," chr12~chr12 102224337 119937883 2 -+ 0.693147 1 1 0 1 12 TCGA-DX-AB2O-01A-12R-A39D-07 GNPTAB~CCDC60 fusion "GNPTAB," "CCDC60," chr12~chr12 102224337 119942874 3 -+ 1.098612 3 3 0 3 6 TCGA-DX-AB2O-01A-12R-A39D-07 GRPEL1~Nchr4~7100179 intergenic "GRPEL1," "-," chr4~chr4 7065788 7100179 58 -+ 2.746728 58 40 17 58 134 TCGA-DX-AB2O-01A-12R-A39D-07 GRPEL1~Nchr4~84899587 intergenic "GRPEL1," "-," chr4~chr4 7065788 84899587 6 -+ 1.791759 6 4 2 6 18 TCGA-DX-AB2O-01A-12R-A39D-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 123 -- 2.436331 123 123 0 123 114 TCGA-DX-AB2O-01A-12R-A39D-07 HMBOX1~FSTL5 fusion "HMBOX1," "FSTL5," chr8~chr4 28837673 162508727 55 +- 3.118475 6 4 2 6 30 TCGA-DX-AB2O-01A-12R-A39D-07 INSR~CEP89 fusion "INSR," "CEP89," chr19~chr19 7267356 33370284 16 -- 1.836422 16 5 11 16 76 TCGA-DX-AB2O-01A-12R-A39D-07 KIAA0284~Nchr14~82835993 intergenic "KIAA0284," "-," chr14~chr14 105344405 82835993 4 +- 1.386294 4 2 2 4 18 TCGA-DX-AB2O-01A-12R-A39D-07 KIF5C~GULP1 fusion "KIF5C," "GULP1," chr2~chr2 149868197 189458667 9 ++ 1.21489 9 9 0 9 34 TCGA-DX-AB2O-01A-12R-A39D-07 LETM1~Nchr4~84832713 intergenic "LETM1," "-," chr4~chr4 1834471 84832713 2 -+ 0.693147 2 2 0 2 6 TCGA-DX-AB2O-01A-12R-A39D-07 MED13L~Nchr12~129240229 intergenic "MED13L," "-," chr12~chr12 116534474 129240229 20 -+ 2.080557 19 6 13 19 28 TCGA-DX-AB2O-01A-12R-A39D-07 MED13L~Nchr14~82040236 intergenic "MED13L," "-," chr12~chr14 116534474 82040236 55 -- 2.864163 48 26 21 48 66 TCGA-DX-AB2O-01A-12R-A39D-07 MLLT10~Nchr10~18516911 intergenic "MLLT10," "-," chr10~chr10 21971186 18516911 9 +- 1.303092 9 1 8 9 14 TCGA-DX-AB2O-01A-12R-A39D-07 MLLT10~Nchr10~18516911 intergenic "MLLT10," "-," chr10~chr10 21977467 18516911 3 +- 0.636514 3 0 3 3 4 TCGA-DX-AB2O-01A-12R-A39D-07 MLLT10~RP11-109I13.2 fusion "MLLT10," "RP11-109I13.2," chr10~chr10 21979890 18523188 2 +- 0.693147 2 1 1 2 8 TCGA-DX-AB2O-01A-12R-A39D-07 NOSTRIN~Nchr2~146170791 intergenic "NOSTRIN," "-," chr2~chr2 169659183 146170791 4 ++ 1.039721 4 4 0 4 2 TCGA-DX-AB2O-01A-12R-A39D-07 Nchr16~79619777~Nchr16~79246798 intergenic "-," "-," chr16~chr16 79619777 79246798 10 -- 2.302585 10 4 6 10 48 TCGA-DX-AB2O-01A-12R-A39D-07 Nchr17~7075678~PRPF8 intergenic "-," "PRPF8," chr17~chr17 7075678 1558837 3 -- 1.098612 3 2 1 3 10 TCGA-DX-AB2O-01A-12R-A39D-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151282 5 -- 1.609438 4 2 2 4 18 TCGA-DX-AB2O-01A-12R-A39D-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 12 -- 2.022809 10 3 7 10 18 TCGA-DX-AB2O-01A-12R-A39D-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 9 ++ 0.995027 9 3 6 9 102 TCGA-DX-AB2O-01A-12R-A39D-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 76 -+ 2.946967 71 47 24 71 604 TCGA-DX-AB2O-01A-12R-A39D-07 Nchr1~246167911~TBCE intergenic "-," "TBCE," chr1~chr1 246167911 235590624 2 +- 0.693147 2 1 1 2 4 TCGA-DX-AB2O-01A-12R-A39D-07 Nchr3~115510005~LSAMP intergenic "-," "LSAMP," chr3~chr3 115510005 115725983 5 ++ 1.609438 3 1 2 3 4 TCGA-DX-AB2O-01A-12R-A39D-07 Nchr3~187872040~LPP intergenic "-," "LPP," chr3~chr3 187872040 188123900 3 ++ 0.636514 3 0 3 3 2 TCGA-DX-AB2O-01A-12R-A39D-07 Nchr3~87138757~Nchr2~194166979 intergenic "-," "-," chr3~chr2 87138757 194166979 4 +- 1.039721 4 0 4 4 12 TCGA-DX-AB2O-01A-12R-A39D-07 Nchr4~13523897~SORCS2 intergenic "-," "SORCS2," chr4~chr4 13523897 7203018 3 -- 1.098612 3 2 1 3 4 TCGA-DX-AB2O-01A-12R-A39D-07 Nchr4~179533279~ENPP6 intergenic "-," "ENPP6," chr4~chr4 179533279 185142379 2 -- 0.693147 2 0 2 2 8 TCGA-DX-AB2O-01A-12R-A39D-07 Nchr4~4546634~Nchr4~4822133 intergenic "-," "-," chr4~chr4 4546634 4822133 2 ++ 0.693147 2 2 0 2 2 TCGA-DX-AB2O-01A-12R-A39D-07 Nchr6~29894282~HLA-C intergenic "-," "HLA-C," chr6~chr6 29894282 31239645 3 -- 1.098612 1 0 1 1 62 TCGA-DX-AB2O-01A-12R-A39D-07 Nchr6~80779651~NchrX~4210064 intergenic "-," "-," chr6~chrX 80779651 4210064 7 -+ 1.747868 2 0 2 2 2 TCGA-DX-AB2O-01A-12R-A39D-07 Nchr8~37955588~APBB2 intergenic "-," "APBB2," chr8~chr4 37955588 40942069 3 -+ 1.098612 3 1 2 3 2 TCGA-DX-AB2O-01A-12R-A39D-07 Nchr8~37962341~APBB2 intergenic "-," "APBB2," chr8~chr4 37962341 40942069 4 -+ 1.386294 3 2 1 3 16 TCGA-DX-AB2O-01A-12R-A39D-07 Nchr8~37962341~CORIN intergenic "-," "CORIN," chr8~chr4 37962341 47809064 12 -- 2.369382 12 3 9 12 42 TCGA-DX-AB2O-01A-12R-A39D-07 Nchr9~17906920~Nchr9~18163860 intergenic "-," "-," chr9~chr9 17906920 18163860 19 ++ 2.44794 15 11 4 15 40 TCGA-DX-AB2O-01A-12R-A39D-07 Nchr9~28947816~LINGO2 intergenic "-," "LINGO2," chr9~chr9 28947816 28670278 5 -- 1.332179 1 0 1 1 6 TCGA-DX-AB2O-01A-12R-A39D-07 NchrX~36982319~NchrX~36698022 intergenic "-," "-," chrX~chrX 36982319 36698022 5 -- 1.609438 5 3 2 5 12 TCGA-DX-AB2O-01A-12R-A39D-07 NchrX~97443440~Nchr3~196334185 intergenic "-," "-," chrX~chr3 97443440 196334185 2 -- 0.693147 2 1 1 2 6 TCGA-DX-AB2O-01A-12R-A39D-07 NchrX~97443440~Nchr3~196336387 intergenic "-," "-," chrX~chr3 97443440 196336387 2 -- 0.693147 2 1 1 2 8 TCGA-DX-AB2O-01A-12R-A39D-07 NchrX~97607002~Nchr3~196333166 intergenic "-," "-," chrX~chr3 97607002 196333166 18 -- 2.50529 7 6 1 7 10 TCGA-DX-AB2O-01A-12R-A39D-07 NchrX~97607002~Nchr3~196334185 intergenic "-," "-," chrX~chr3 97607002 196334185 2 -- 0.693147 1 1 0 1 10 TCGA-DX-AB2O-01A-12R-A39D-07 PAK2~LPP fusion "PAK2," "LPP," chr3~chr3 196467028 188477901 11 ++ 2.019815 10 8 2 10 10 TCGA-DX-AB2O-01A-12R-A39D-07 PAX3~Nchr2~72336534 intergenic "PAX3," "-," chr2~chr2 223084859 72336534 8 -+ 2.079442 7 2 5 7 36 TCGA-DX-AB2O-01A-12R-A39D-07 PPP2R5E~Nchr2~137212781 intergenic "PPP2R5E," "-," chr14~chr2 64006247 137212781 5 -- 1.609438 4 2 2 4 18 TCGA-DX-AB2O-01A-12R-A39D-07 RABIF~MKNK1 fusion "RABIF," "MKNK1," chr1~chr1 202858101 47059952 6 -- 1.56071 6 1 5 6 14 TCGA-DX-AB2O-01A-12R-A39D-07 RABIF~Nchr1~244151657 intergenic "RABIF," "-," chr1~chr1 202858101 244151657 4 -- 1.386294 4 2 2 4 4 TCGA-DX-AB2O-01A-12R-A39D-07 RANBP2~Nchr2~104837376 intergenic "RANBP2," "-," chr2~chr2 109371715 104837376 30 +- 2.27472 29 21 8 29 74 TCGA-DX-AB2O-01A-12R-A39D-07 RELL1~Nchr4~4562606 intergenic "RELL1," "-," chr4~chr4 37636509 4562606 147 -- 2.989287 144 72 72 144 266 TCGA-DX-AB2O-01A-12R-A39D-07 RELL1~Nchr4~4564487 intergenic "RELL1," "-," chr4~chr4 37636509 4564487 8 -- 1.906155 8 5 3 8 300 TCGA-DX-AB2O-01A-12R-A39D-07 RELL1~Nchr4~4570673 intergenic "RELL1," "-," chr4~chr4 37636509 4570673 7 -- 1.94591 7 4 3 7 246 TCGA-DX-AB2O-01A-12R-A39D-07 RGS12~Nchr8~15095933 intergenic "RGS12," "-," chr4~chr8 3429896 15095933 24 ++ 2.570985 21 9 12 21 34 TCGA-DX-AB2O-01A-12R-A39D-07 RNF10~DENR fusion "RNF10," "DENR," chr12~chr12 120990501 123238240 2 ++ 0.693147 1 1 0 1 4 TCGA-DX-AB2O-01A-12R-A39D-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 10 +- 1.359237 9 0 9 9 2 TCGA-DX-AB2O-01A-12R-A39D-07 RPRD1A~CHMP2B fusion "RPRD1A," "CHMP2B," chr18~chr3 33647217 87294864 39 -+ 2.921104 39 22 17 39 78 TCGA-DX-AB2O-01A-12R-A39D-07 SAMD5~RP11-307P5.1 fusion "SAMD5," "RP11-307P5.1," chr6~chr6 147830523 148054865 3 ++ 1.098612 3 0 3 3 2 TCGA-DX-AB2O-01A-12R-A39D-07 SEPT11~Nchr4~179533382 intergenic "SEPT11," "-," chr4~chr4 77871083 179533382 112 +- 3.043747 108 61 46 108 300 TCGA-DX-AB2O-01A-12R-A39D-07 SEPT11~Nchr4~179533382 intergenic "SEPT11," "-," chr4~chr4 77909023 179533382 7 +- 1.747868 7 3 4 7 14 TCGA-DX-AB2O-01A-12R-A39D-07 SESTD1~FGGY fusion "SESTD1," "FGGY," chr2~chr1 180128845 60073475 3 -+ 1.098612 3 0 3 3 2 TCGA-DX-AB2O-01A-12R-A39D-07 SESTD1~FGGY fusion "SESTD1," "FGGY," chr2~chr1 180129226 60073475 92 -+ 3.033467 85 63 22 85 154 TCGA-DX-AB2O-01A-12R-A39D-07 SESTD1~FGGY fusion "SESTD1," "FGGY," chr2~chr1 180129226 60091660 4 -+ 1.039721 4 4 0 4 46 TCGA-DX-AB2O-01A-12R-A39D-07 SESTD1~Nchr2~144593416 intergenic "SESTD1," "-," chr2~chr2 180129226 144593416 4 -- 1.386294 4 2 2 4 4 TCGA-DX-AB2O-01A-12R-A39D-07 SESTD1~Nchr3~86531082 intergenic "SESTD1," "-," chr2~chr3 180129226 86531082 97 -+ 2.989704 95 11 83 95 510 TCGA-DX-AB2O-01A-12R-A39D-07 SESTD1~Nchr3~86531082 intergenic "SESTD1," "-," chr2~chr3 180128845 86531082 2 -+ 0.693147 2 0 2 2 12 TCGA-DX-AB2O-01A-12R-A39D-07 SESTD1~Nchr3~86531082 intergenic "SESTD1," "-," chr2~chr3 180102002 86531082 3 -+ 0.636514 3 1 2 3 378 TCGA-DX-AB2O-01A-12R-A39D-07 SESTD1~Nchr3~86531082 intergenic "SESTD1," "-," chr2~chr3 180094111 86531082 19 -+ 2.552085 18 6 12 18 322 TCGA-DX-AB2O-01A-12R-A39D-07 SESTD1~Nchr3~86531089 intergenic "SESTD1," "-," chr2~chr3 180129226 86531089 110 -+ 2.933166 105 17 87 105 472 TCGA-DX-AB2O-01A-12R-A39D-07 SESTD1~Nchr3~86531089 intergenic "SESTD1," "-," chr2~chr3 180094111 86531089 5 -+ 1.609438 4 3 1 4 282 TCGA-DX-AB2O-01A-12R-A39D-07 SESTD1~Nchr3~86564305 intergenic "SESTD1," "-," chr2~chr3 180129226 86564305 5 -+ 1.609438 5 0 5 5 16 TCGA-DX-AB2O-01A-12R-A39D-07 SESTD1~Nchr3~86646134 intergenic "SESTD1," "-," chr2~chr3 180129226 86646134 5 -+ 1.609438 4 3 1 4 634 TCGA-DX-AB2O-01A-12R-A39D-07 SESTD1~Nchr3~86648859 intergenic "SESTD1," "-," chr2~chr3 180129226 86648859 386 -+ 3.357239 380 114 259 380 684 TCGA-DX-AB2O-01A-12R-A39D-07 SESTD1~Nchr3~86648859 intergenic "SESTD1," "-," chr2~chr3 180128845 86648859 5 -+ 1.609438 3 3 0 3 2 TCGA-DX-AB2O-01A-12R-A39D-07 SESTD1~OPCML fusion "SESTD1," "OPCML," chr2~chr11 180129226 132582690 5 -- 1.05492 5 5 0 5 4 TCGA-DX-AB2O-01A-12R-A39D-07 SESTD1~OPCML fusion "SESTD1," "OPCML," chr2~chr11 180129226 132585877 4 -- 1.386294 3 3 0 3 2 TCGA-DX-AB2O-01A-12R-A39D-07 SESTD1~RP11-331K15.1 fusion "SESTD1," "RP11-331K15.1," chr2~chr3 180129226 86533501 3 -+ 1.098612 3 2 1 3 232 TCGA-DX-AB2O-01A-12R-A39D-07 SESTD1~RP11-331K15.1 fusion "SESTD1," "RP11-331K15.1," chr2~chr3 180129226 86544941 72 -+ 3.000735 71 9 61 71 226 TCGA-DX-AB2O-01A-12R-A39D-07 SESTD1~RP11-331K15.1 fusion "SESTD1," "RP11-331K15.1," chr2~chr3 180129226 86544946 19 -+ 2.506662 16 3 13 16 220 TCGA-DX-AB2O-01A-12R-A39D-07 STX6~ST6GALNAC3 fusion "STX6," "ST6GALNAC3," chr1~chr1 180953813 76644213 20 -+ 2.553682 19 7 12 19 82 TCGA-DX-AB2O-01A-12R-A39D-07 STX6~ST6GALNAC3 fusion "STX6," "ST6GALNAC3," chr1~chr1 180953813 76646277 5 -+ 1.609438 5 0 5 5 44 TCGA-DX-AB2O-01A-12R-A39D-07 STYX~DAD1 fusion "STYX," "DAD1," chr14~chr14 53226472 23034037 40 +- 2.651337 39 22 17 39 120 TCGA-DX-AB2O-01A-12R-A39D-07 TAB2~KCNU1 fusion "TAB2," "KCNU1," chr6~chr8 149663969 36721922 7 ++ 1.747868 4 3 1 4 16 TCGA-DX-AB2O-01A-12R-A39D-07 TAB2~PAX7 fusion "TAB2," "PAX7," chr6~chr1 149639151 19062126 5 ++ 1.332179 5 5 0 5 8 TCGA-DX-AB2O-01A-12R-A39D-07 TBC1D14~EVC fusion "TBC1D14," "EVC," chr4~chr4 6989076 5785279 53 ++ 2.500249 51 48 3 51 104 TCGA-DX-AB2O-01A-12R-A39D-07 TBC1D14~Nchr4~67060111 intergenic "TBC1D14," "-," chr4~chr4 6989076 67060111 2 +- 0.693147 2 1 1 2 2 TCGA-DX-AB2O-01A-12R-A39D-07 TBX15~Nchr10~54069297 intergenic "TBX15," "-," chr1~chr10 119474242 54069297 6 -- 1.56071 5 3 2 5 10 TCGA-DX-AB2O-01A-12R-A39D-07 TBX15~Nchr10~54073245 intergenic "TBX15," "-," chr1~chr10 119474242 54073245 3 -- 1.098612 2 0 2 2 8 TCGA-DX-AB2O-01A-12R-A39D-07 UBR4~C1QC fusion "UBR4," "C1QC," chr1~chr1 19447683 22973720 37 -+ 2.529081 38 27 10 38 94 TCGA-DX-AB2O-01A-12R-A39D-07 VGLL3~Nchr3~87147576 intergenic "VGLL3," "-," chr3~chr3 87039768 87147576 2 -- 0.693147 2 1 1 2 2 TCGA-DX-AB2O-01A-12R-A39D-07 VIM~Nchr13~82264281 intergenic "VIM," "-," chr10~chr13 17277856 82264281 3 -+ 1.098612 3 2 1 3 8 TCGA-DX-AB2O-01A-12R-A39D-07 VPS37A~WDR78 fusion "VPS37A,VPS37A," "WDR78," chr8~chr1 17104878 67337192 3 +- 1.098612 3 1 2 3 14 TCGA-DX-AB2O-01A-12R-A39D-07 WAC~Nchr10~29077831 intergenic "WAC," "-," chr10~chr10 28824686 29077831 8 ++ 1.906155 8 3 5 8 28 TCGA-DX-AB2O-01A-12R-A39D-07 WAC~Nchr10~29094976 intergenic "WAC," "-," chr10~chr10 28824686 29094976 20 ++ 2.194474 20 14 6 20 128 TCGA-DX-AB2O-01A-12R-A39D-07 WAC~Nchr10~29101820 intergenic "WAC," "-," chr10~chr10 28824686 29101820 19 ++ 2.451583 18 10 8 18 58 TCGA-DX-AB2O-01A-12R-A39D-07 WARS~Nchr14~95185763 intergenic "WARS," "-," chr14~chr14 100841620 95185763 24 -+ 2.636391 23 16 7 23 26 TCGA-DX-AB2O-01A-12R-A39D-07 WARS~Nchr14~95201984 intergenic "WARS," "-," chr14~chr14 100841620 95201984 12 -+ 2.094729 11 9 2 11 14 TCGA-DX-AB2O-01A-12R-A39D-07 WDR20~Nchr1~73993435 intergenic "WDR20," "-," chr14~chr1 102606324 73993435 8 ++ 2.079442 6 5 1 6 22 TCGA-DX-AB2O-01A-12R-A39D-07 WDR20~Nchr1~73993435 intergenic "WDR20," "-," chr14~chr1 102606509 73993435 55 ++ 2.882113 52 12 40 52 240 TCGA-DX-AB2O-01A-12R-A39D-07 ZNF248~Nchr10~31384922 intergenic "ZNF248," "-," chr10~chr10 38120160 31384922 2 -- 0.693147 2 0 2 2 4 TCGA-3B-A9I0-01A-11R-A39D-07 HN1~Nchr2~174296244 intergenic "HN1," "-," chr17~chr2 73143651 174296244 11 -- 0.859967 6 6 0 6 2 TCGA-3B-A9I0-01A-11R-A39D-07 MYH11~ACTA2 fusion "MYH11," "RP11-399O19.5,ACTA2," chr16~chr10 15808766 90699290 2 -- 0.693147 2 1 1 2 2 TCGA-3B-A9I0-01A-11R-A39D-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 67 -+ 2.578046 38 0 38 38 30 TCGA-3B-A9I0-01A-11R-A39D-07 Nchr16~79619777~Nchr16~79246798 intergenic "-," "-," chr16~chr16 79619777 79246798 2 -- 0.693147 2 1 1 2 4 TCGA-3B-A9I0-01A-11R-A39D-07 Nchr19~59118749~LRTOMT intergenic "-," "LRTOMT," chr19~chr11 59118749 71816010 2 ++ 0.693147 2 2 0 2 2 TCGA-3B-A9I0-01A-11R-A39D-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 21 -+ 2.51641 19 14 5 19 244 TCGA-3B-A9I0-01A-11R-A39D-07 Nchr2~177065915~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065915 177065788 5 ++ 1.332179 5 0 5 5 2 TCGA-3B-A9I0-01A-11R-A39D-07 Nchr7~110514869~IMMP2L intergenic "-," "IMMP2L," chr7~chr7 110514869 110303777 7 -- 1.747868 7 3 4 7 4 TCGA-3B-A9I0-01A-11R-A39D-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40768381 6 ++ 1.242453 1 0 1 1 26 TCGA-3B-A9I0-01A-11R-A39D-07 Nchr7~40549144~C7orf10 intergenic "-," "C7orf10," chr7~chr7 40549144 40789033 175 ++ 2.550444 30 1 29 30 26 TCGA-3B-A9I0-01A-11R-A39D-07 PCSK7~RPS20 fusion "TAGLN,PCSK7,TAGLN," "RPS20," chr11~chr8 117075249 56987032 3 -- 0.636514 3 0 3 3 6 TCGA-3B-A9I0-01A-11R-A39D-07 RP11-466L17.1~RP11-90C4.1 fusion "RP11-466L17.1," "RP11-90C4.1," chr1~chr1 56080675 56297937 2 ++ 0.693147 2 2 0 2 4 TCGA-3B-A9I0-01A-11R-A39D-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 2 ++ 0.693147 2 0 2 2 18 TCGA-DX-AB32-01A-11R-A41I-07 ARFRP1~Nchr20~61711344 intergenic "ARFRP1," "-," chr20~chr20 62331954 61711344 9 -+ 2.163956 10 4 5 10 50 TCGA-DX-AB32-01A-11R-A41I-07 ATP2B4~OPTC fusion "ATP2B4," "OPTC," chr1~chr1 203683405 203472042 8 ++ 1.667462 6 4 2 6 14 TCGA-DX-AB32-01A-11R-A41I-07 DYM~Nchr18~42220065 intergenic "DYM," "-," chr18~chr18 46623772 42220065 6 -+ 1.329661 6 4 2 6 20 TCGA-DX-AB32-01A-11R-A41I-07 GMEB2~RP5-963E22.4 fusion "GMEB2," "RP5-963E22.4," chr20~chr20 62250620 61798502 6 -- 1.56071 6 4 2 6 18 TCGA-DX-AB32-01A-11R-A41I-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238905 31324034 4 -- 1.386294 1 1 0 1 2 TCGA-DX-AB32-01A-11R-A41I-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32487941 32548633 211 -- 2.138915 40 4 36 40 38 TCGA-DX-AB32-01A-11R-A41I-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 1311 -- 2.437724 781 102 673 781 2 TCGA-DX-AB32-01A-11R-A41I-07 IGKV4-1~AC096579.7 fusion "IGKV4-1," "IGKC,AC096579.7," chr2~chr2 89185136 89157196 5 +- 1.05492 5 5 0 5 14 TCGA-DX-AB32-01A-11R-A41I-07 LMAN1~NBEAL1 fusion "LMAN1," "NBEAL1," chr18~chr2 57013151 204090820 3 -+ 0.636514 3 2 1 3 746 TCGA-DX-AB32-01A-11R-A41I-07 LMAN1~NBEAL1 fusion "LMAN1," "NBEAL1," chr18~chr2 57013151 204090846 383 -+ 3.194195 371 209 162 371 744 TCGA-DX-AB32-01A-11R-A41I-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 50 -+ 2.507704 29 0 29 29 20 TCGA-DX-AB32-01A-11R-A41I-07 Nchr18~72265173~LOXHD1 intergenic "-," "LOXHD1," chr18~chr18 72265173 44188475 7 ++ 1.549826 7 7 0 7 4 TCGA-DX-AB32-01A-11R-A41I-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 3 ++ 0.636514 3 1 2 3 16 TCGA-DX-AB32-01A-11R-A41I-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 43 -+ 2.818713 42 28 12 42 230 TCGA-DX-AB32-01A-11R-A41I-07 REV3L~Nchr6~87548191 intergenic "REV3L," "-," chr6~chr6 111793216 87548191 6 -- 1.56071 4 1 3 4 24 TCGA-DX-AB32-01A-11R-A41I-07 REV3L~Nchr6~87548191 intergenic "REV3L," "-," chr6~chr6 111803953 87548191 6 -- 1.56071 2 2 0 2 10 TCGA-DX-AB32-01A-11R-A41I-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 10 +- 1.168282 9 0 9 9 2 TCGA-DX-AB32-01A-11R-A41I-07 TFAP4~Nchr18~70723373 intergenic "TFAP4," "-," chr16~chr18 4312325 70723373 11 -- 2.098274 11 4 7 11 56 TCGA-DX-AB2V-01A-11R-A41I-07 ATG5~Nchr6~106457255 intergenic "ATG5," "-," chr6~chr6 106696025 106457255 17 -- 2.476247 16 9 7 16 92 TCGA-DX-AB2V-01A-11R-A41I-07 BLZF1~Nchr1~177801081 intergenic "BLZF1," "-," chr1~chr1 169351519 177801081 8 +- 1.732868 8 8 0 8 6 TCGA-DX-AB2V-01A-11R-A41I-07 CDK17~ELK3 fusion "CDK17," "RP11-394J1.2,ELK3," chr12~chr12 96793764 96617343 21 -+ 2.449424 22 15 6 22 82 TCGA-DX-AB2V-01A-11R-A41I-07 CTD-2023M8.1~Nchr5~17145258 intergenic "CTD-2023M8.1," "-," chr5~chr5 18746107 17145258 7 -- 0.9557 7 0 7 7 26 TCGA-DX-AB2V-01A-11R-A41I-07 FUT8~Nchr1~198449475 intergenic "FUT8," "-," chr14~chr1 66136198 198449475 3 +- 1.098612 3 2 1 3 20 TCGA-DX-AB2V-01A-11R-A41I-07 KCTD5~AC141586.5 fusion "KCTD5," "AC141586.5," chr16~chr16 2732801 2660463 4 ++ 0.562335 4 4 0 4 38 TCGA-DX-AB2V-01A-11R-A41I-07 KIF26A~KIAA0284 fusion "KIF26A," "KIAA0284," chr14~chr14 104605625 105359860 11 ++ 1.84622 11 3 8 11 30 TCGA-DX-AB2V-01A-11R-A41I-07 KIRREL~CD1A fusion "KIRREL," "CD1A," chr1~chr1 157963518 158226576 12 ++ 1.979205 12 0 12 12 36 TCGA-DX-AB2V-01A-11R-A41I-07 KIRREL~CD1C fusion "KIRREL," "CD1C," chr1~chr1 157963518 158260924 58 ++ 2.804797 57 2 54 57 182 TCGA-DX-AB2V-01A-11R-A41I-07 LY96~GDAP1 fusion "LY96," "GDAP1," chr8~chr8 74903789 75400913 11 ++ 1.84622 11 8 3 11 52 TCGA-DX-AB2V-01A-11R-A41I-07 MAX~ACTN1 fusion "MAX," "ACTN1," chr14~chr14 65560426 69392389 184 -- 3.096886 177 91 86 177 878 TCGA-DX-AB2V-01A-11R-A41I-07 NSMCE2~Nchr8~107889910 intergenic "NSMCE2," "-," chr8~chr8 126194498 107889910 3 +- 1.098612 3 2 1 3 12 TCGA-DX-AB2V-01A-11R-A41I-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 152 -+ 2.602254 82 0 82 82 28 TCGA-DX-AB2V-01A-11R-A41I-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 14 -+ 2.106577 11 8 3 11 62 TCGA-DX-AB2V-01A-11R-A41I-07 Nchr1~147775638~RP11-495P10.6 intergenic "-," "RP11-495P10.6," chr1~chr1 147775638 147744165 3 +- 1.098612 3 0 3 3 2 TCGA-DX-AB2V-01A-11R-A41I-07 Nchr8~74565970~Nchr8~107631036 intergenic "-," "-," chr8~chr8 74565970 107631036 7 -+ 1.153742 7 3 4 7 34 TCGA-DX-AB2V-01A-11R-A41I-07 RAB3IL1~Nchr11~1384985 intergenic "RAB3IL1," "-," chr11~chr11 61684829 1384985 13 -- 1.778233 13 13 0 13 16 TCGA-DX-AB2V-01A-11R-A41I-07 RGL1~NMNAT2 fusion "RGL1," "NMNAT2," chr1~chr1 183605636 183230438 5 +- 1.05492 5 3 2 5 18 TCGA-DX-AB2V-01A-11R-A41I-07 RGL1~NMNAT2 fusion "RGL1," "NMNAT2," chr1~chr1 183605636 183247764 25 +- 2.345239 24 17 7 24 46 TCGA-DX-AB2V-01A-11R-A41I-07 RP11-510I5.1~ELK3 fusion "RP11-510I5.1," "RP11-394J1.2,ELK3," chr12~chr12 96821057 96617343 4 -+ 1.039721 4 4 0 4 2 TCGA-DX-AB2V-01A-11R-A41I-07 RP11-73M18.2~Nchr14~72595813 intergenic "C14orf153,RP11-73M18.2," "-," chr14~chr14 104040507 72595813 2 ++ 0.693147 2 1 1 2 4 TCGA-DX-AB2V-01A-11R-A41I-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 11 ++ 1.767761 11 3 8 11 36 TCGA-DX-AB2V-01A-11R-A41I-07 S100A10~Nchr1~193748085 intergenic "S100A10," "-," chr1~chr1 151958575 193748085 10 -- 1.834372 8 1 7 8 60 TCGA-DX-AB2V-01A-11R-A41I-07 S100A10~Nchr1~193895843 intergenic "S100A10," "-," chr1~chr1 151958575 193895843 9 -- 1.83102 8 5 3 8 34 TCGA-DX-AB2V-01A-11R-A41I-07 SLC24A4~Nchr8~101464219 intergenic "SLC24A4," "-," chr14~chr8 92922952 101464219 3 ++ 0.636514 3 2 1 3 18 TCGA-DX-AB2V-01A-11R-A41I-07 TSG101~PPFIA1 fusion "TSG101," "PPFIA1," chr11~chr11 18536225 70229109 2 -+ 0.693147 2 1 1 2 8 TCGA-DX-AB2V-01A-11R-A41I-07 WARS~Nchr14~107264013 intergenic "WARS," "-," chr14~chr14 100813083 107264013 6 -+ 1.56071 5 5 0 5 2 TCGA-DX-AB2V-01A-11R-A41I-07 WDYHV1~RP11-600K15.1 fusion "WDYHV1," "RP11-600K15.1," chr8~chr8 124429172 69836730 6 +- 1.56071 6 1 5 6 36 TCGA-DX-A6YX-01A-11R-A41I-07 ASAP1~RP11-89K10.1 fusion "ASAP1," "RP11-89K10.1," chr8~chr8 131414131 127719431 7 -+ 1.747868 6 4 2 6 48 TCGA-DX-A6YX-01A-11R-A41I-07 ASAP1~RP11-89K10.1 fusion "ASAP1," "RP11-89K10.1," chr8~chr8 131414131 127725531 11 -+ 2.145842 11 9 2 11 42 TCGA-DX-A6YX-01A-11R-A41I-07 ASAP1~TRAPPC9 fusion "ASAP1," "TRAPPC9," chr8~chr8 131220876 140743471 8 -- 1.906155 6 3 3 6 1200 TCGA-DX-A6YX-01A-11R-A41I-07 ASAP1~TRAPPC9 fusion "ASAP1," "TRAPPC9," chr8~chr8 131226802 140743471 426 -- 3.049757 386 207 174 386 1432 TCGA-DX-A6YX-01A-11R-A41I-07 C15orf57~CBX3 fusion "C15orf57," "CBX3," chr15~chr7 40854971 26241389 2 -+ 0.693147 2 1 1 2 14 TCGA-DX-A6YX-01A-11R-A41I-07 CMTM8~CMTM7 fusion "CMTM8," "CMTM7," chr3~chr3 32280611 32483332 2 ++ 0.693147 2 0 2 2 14 TCGA-DX-A6YX-01A-11R-A41I-07 CTD-2337A12.1~CAST fusion "CTD-2337A12.1," "CAST," chr5~chr5 95715356 96011243 6 ++ 1.56071 1 0 1 1 6 TCGA-DX-A6YX-01A-11R-A41I-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 98 -- 2.477832 98 98 0 98 26 TCGA-DX-A6YX-01A-11R-A41I-07 NCOA2~Nchr8~57691928 intergenic "NCOA2," "-," chr8~chr8 71208979 57691928 12 -+ 1.935601 9 9 0 9 8 TCGA-DX-A6YX-01A-11R-A41I-07 NCOA2~Nchr8~57743722 intergenic "NCOA2," "-," chr8~chr8 71208979 57743722 4 -+ 1.386294 2 2 0 2 2 TCGA-DX-A6YX-01A-11R-A41I-07 NF1~RAB11FIP4 fusion "NF1," "RAB11FIP4," chr17~chr17 29576137 29844669 42 ++ 2.623948 41 34 7 41 204 TCGA-DX-A6YX-01A-11R-A41I-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 30 -+ 2.089511 18 0 18 18 4 TCGA-DX-A6YX-01A-11R-A41I-07 Nchr13~102844510~FGF14 intergenic "-," "FGF14," chr13~chr13 102844510 102527646 4 -- 1.386294 2 1 1 2 12 TCGA-DX-A6YX-01A-11R-A41I-07 Nchr14~58283422~SLC35F4 intergenic "-," "SLC35F4," chr14~chr14 58283422 58060842 4 -- 1.386294 4 2 2 4 16 TCGA-DX-A6YX-01A-11R-A41I-07 Nchr15~27333935~GABRG3 intergenic "-," "GABRG3," chr15~chr15 27333935 27571956 6 ++ 1.56071 6 4 2 6 24 TCGA-DX-A6YX-01A-11R-A41I-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 2 ++ 0.693147 2 0 2 2 8 TCGA-DX-A6YX-01A-11R-A41I-07 Nchr18~37331293~Nchr18~37115579 intergenic "-," "-," chr18~chr18 37331293 37115579 2 -- 0.693147 2 1 1 2 8 TCGA-DX-A6YX-01A-11R-A41I-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 76 -+ 2.964062 70 45 25 70 334 TCGA-DX-A6YX-01A-11R-A41I-07 Nchr1~88994519~Nchr1~88500582 intergenic "-," "-," chr1~chr1 88994519 88500582 7 -- 1.747868 2 0 2 2 4 TCGA-DX-A6YX-01A-11R-A41I-07 Nchr2~177065929~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065929 177065788 6 ++ 1.329661 6 0 6 6 62 TCGA-DX-A6YX-01A-11R-A41I-07 Nchr2~81775871~Nchr2~82049394 intergenic "-," "-," chr2~chr2 81775871 82049394 2 ++ 0.693147 2 0 2 2 10 TCGA-DX-A6YX-01A-11R-A41I-07 Nchr2~81775871~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81775871 82075877 8 ++ 1.732868 5 4 1 5 10 TCGA-DX-A6YX-01A-11R-A41I-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 4 ++ 1.386294 4 4 0 4 2 TCGA-DX-A6YX-01A-11R-A41I-07 RP11-108M21.1~Nchr1~187387043 intergenic "RP11-108M21.1," "-," chr1~chr1 187062078 187387043 4 ++ 1.386294 2 0 2 2 10 TCGA-DX-A6YX-01A-11R-A41I-07 RP11-152P17.2~Nchr8~133549661 intergenic "RP11-152P17.2," "-," chr8~chr8 106939879 133549661 16 -+ 2.096353 10 0 10 10 10 TCGA-DX-A6YX-01A-11R-A41I-07 RP11-152P17.2~Nchr8~133549671 intergenic "RP11-152P17.2," "-," chr8~chr8 106939879 133549671 6 -+ 1.791759 3 0 3 3 6 TCGA-DX-A6YX-01A-11R-A41I-07 RP11-152P17.2~Nchr8~133557056 intergenic "RP11-152P17.2," "-," chr8~chr8 106939879 133557056 10 -+ 1.973001 4 0 4 4 4 TCGA-DX-A6YX-01A-11R-A41I-07 RP11-501G6.1~Nchr13~70139673 intergenic "RP11-501G6.1," "-," chr13~chr13 69849396 70139673 6 ++ 1.329661 2 2 0 2 2 TCGA-DX-A6YX-01A-11R-A41I-07 RP11-501G6.1~Nchr13~70219542 intergenic "RP11-501G6.1," "-," chr13~chr13 69849396 70219542 3 ++ 1.098612 1 0 1 1 16 TCGA-DX-A6YX-01A-11R-A41I-07 RP11-645E10.1~Nchr8~128305057 intergenic "RP11-645E10.1," "-," chr8~chr8 128018863 128305057 8 ++ 1.732868 3 0 3 3 6 TCGA-DX-A6YX-01A-11R-A41I-07 TRPS1~Nchr8~143261907 intergenic "TRPS1," "-," chr8~chr8 116599228 143261907 2 -+ 0.693147 2 1 1 2 14 TCGA-DX-A6YX-01A-11R-A41I-07 ZFHX4~TRAM1 fusion "ZFHX4," "TRAM1,TRAM1," chr8~chr8 77690675 71487240 27 +- 2.570223 24 6 18 24 78 TCGA-DX-AB3C-01A-11R-A41I-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 145 -+ 2.621203 71 0 70 71 76 TCGA-DX-AB3C-01A-11R-A41I-07 Nchr15~70640197~Nchr15~70423230 intergenic "-," "-," chr15~chr15 70640197 70423230 5 -- 1.609438 2 2 0 2 10 TCGA-DX-AB3C-01A-11R-A41I-07 Nchr15~70640197~Nchr15~70427651 intergenic "-," "-," chr15~chr15 70640197 70427651 2 -- 0.693147 2 2 0 2 10 TCGA-DX-AB3C-01A-11R-A41I-07 Nchr15~70878214~Nchr15~70423230 intergenic "-," "-," chr15~chr15 70878214 70423230 23 -- 2.223413 23 12 11 23 110 TCGA-DX-AB3C-01A-11R-A41I-07 Nchr15~70878214~Nchr15~70427651 intergenic "-," "-," chr15~chr15 70878214 70427651 14 -- 1.376055 14 12 2 14 130 TCGA-DX-AB3C-01A-11R-A41I-07 Nchr15~70878214~Nchr15~70526550 intergenic "-," "-," chr15~chr15 70878214 70526550 4 -- 1.386294 4 2 2 4 28 TCGA-DX-AB3C-01A-11R-A41I-07 Nchr15~70878214~Nchr15~70588662 intergenic "-," "-," chr15~chr15 70878214 70588662 6 -- 1.242453 6 1 5 6 14 TCGA-DX-AB3C-01A-11R-A41I-07 Nchr15~70878214~Nchr15~70640258 intergenic "-," "-," chr15~chr15 70878214 70640258 50 -- 2.513695 24 2 22 24 26 TCGA-DX-AB3C-01A-11R-A41I-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 14 -+ 1.833786 12 5 7 12 124 TCGA-DX-AB3C-01A-11R-A41I-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 4 ++ 1.039721 3 3 0 3 20 TCGA-DX-AB3C-01A-11R-A41I-07 Nchr2~122702023~Nchr2~122978395 intergenic "-," "-," chr2~chr2 122702023 122978395 3 ++ 1.098612 1 0 1 1 2 TCGA-DX-AB3C-01A-11R-A41I-07 Nchr2~187321442~Nchr2~187079817 intergenic "-," "-," chr2~chr2 187321442 187079817 3 -- 1.098612 2 0 2 2 4 TCGA-DX-AB3C-01A-11R-A41I-07 Nchr5~93018536~NPM1 intergenic "-," "NPM1," chr5~chr5 93018536 170837597 2 -- 0.693147 2 2 0 2 14 TCGA-DX-AB3C-01A-11R-A41I-07 Nchr9~92470507~RP5-1050E16.2 intergenic "-," "RP5-1050E16.2," chr9~chr9 92470507 92522698 2 ++ 0.693147 2 0 2 2 10 TCGA-VT-A80J-02A-11R-A41I-07 AC007389.3~AC098973.2 fusion "AC007389.3," "AC098973.2," chr2~chr3 65855414 27901578 2 -+ 0.693147 2 0 2 2 6 TCGA-VT-A80J-02A-11R-A41I-07 ATF6~ODZ3 fusion "ATF6," "ODZ3," chr1~chr4 161762117 183522077 30 ++ 2.36714 26 16 10 26 44 TCGA-VT-A80J-02A-11R-A41I-07 C15orf57~CBX3 fusion "C15orf57," "CBX3," chr15~chr7 40854971 26241389 3 -+ 1.098612 3 2 1 3 6 TCGA-VT-A80J-02A-11R-A41I-07 DNAH2~Nchr2~65886566 intergenic "DNAH2," "-," chr17~chr2 7708750 65886566 7 -- 1.747868 6 0 6 6 4 TCGA-VT-A80J-02A-11R-A41I-07 DYX1C1~Nchr15~23804313 intergenic "DYX1C1," "-," chr15~chr15 55783321 23804313 3 -+ 1.098612 3 2 1 3 2 TCGA-VT-A80J-02A-11R-A41I-07 ECE1~Nchr2~237592834 intergenic "ECE1," "-," chr1~chr2 21544756 237592834 6 ++ 1.011404 6 0 6 6 10 TCGA-VT-A80J-02A-11R-A41I-07 EIF1~Nchr17~21163258 intergenic "EIF1," "-," chr17~chr17 39847063 21163258 4 ++ 1.039721 4 0 4 4 4 TCGA-VT-A80J-02A-11R-A41I-07 FAM63B~Nchr15~26342922 intergenic "FAM63B," "-," chr15~chr15 59094576 26342922 7 ++ 1.549826 6 2 4 6 6 TCGA-VT-A80J-02A-11R-A41I-07 HIPK2~FAM40B fusion "HIPK2," "FAM40B," chr7~chr7 139288827 129120626 5 -+ 1.609438 5 4 1 5 8 TCGA-VT-A80J-02A-11R-A41I-07 HNRNPD~Nchr4~83216844 intergenic "HNRNPD," "-," chr4~chr4 83292681 83216844 9 -+ 1.522955 3 3 0 3 8 TCGA-VT-A80J-02A-11R-A41I-07 KCTD5~AC141586.5 fusion "KCTD5," "AC141586.5," chr16~chr16 2732801 2660463 12 ++ 1.42413 11 7 4 11 60 TCGA-VT-A80J-02A-11R-A41I-07 MLL3~Nchr7~141201100 intergenic "MLL3," "-," chr7~chr7 152132711 141201100 3 -- 1.098612 3 2 1 3 20 TCGA-VT-A80J-02A-11R-A41I-07 Nchr10~47654659~ZNF488 intergenic "-," "ZNF488," chr10~chr10 47654659 48359418 3 -- 1.098612 1 1 0 1 4 TCGA-VT-A80J-02A-11R-A41I-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 172 -+ 2.687528 91 0 91 91 64 TCGA-VT-A80J-02A-11R-A41I-07 Nchr12~74544782~Nchr12~74336041 intergenic "-," "-," chr12~chr12 74544782 74336041 4 -- 1.386294 4 0 4 4 8 TCGA-VT-A80J-02A-11R-A41I-07 Nchr12~80944407~OTOGL intergenic "-," "OTOGL," chr12~chr12 80944407 80737609 3 -- 1.098612 3 2 1 3 2 TCGA-VT-A80J-02A-11R-A41I-07 Nchr19~3870923~FTL intergenic "-," "FTL," chr19~chr19 3870923 49468806 2 -- 0.693147 2 0 2 2 16 TCGA-VT-A80J-02A-11R-A41I-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 139 -+ 3.137381 137 94 41 137 330 TCGA-VT-A80J-02A-11R-A41I-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145013721 9 -+ 1.676988 8 4 4 8 24 TCGA-VT-A80J-02A-11R-A41I-07 Nchr2~177065909~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065909 177065788 4 ++ 1.039721 4 0 4 4 4 TCGA-VT-A80J-02A-11R-A41I-07 Nchr2~81709228~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81709228 82075877 4 ++ 1.386294 4 4 0 4 30 TCGA-VT-A80J-02A-11R-A41I-07 Nchr2~81775871~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81775871 82075877 64 ++ 2.758257 43 19 24 43 168 TCGA-VT-A80J-02A-11R-A41I-07 Nchr4~83216940~Nchr4~83168086 intergenic "-," "-," chr4~chr4 83216940 83168086 12 +- 2.369382 8 6 2 8 8 TCGA-VT-A80J-02A-11R-A41I-07 Nchr6~8558876~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8558876 8784424 4 ++ 1.386294 1 0 1 1 2 TCGA-VT-A80J-02A-11R-A41I-07 Nchr7~122851497~Nchr7~123096679 intergenic "-," "-," chr7~chr7 122851497 123096679 3 ++ 0.636514 3 0 3 3 14 TCGA-VT-A80J-02A-11R-A41I-07 ODZ3~AC096669.3 fusion "ODZ3," "AC096669.3," chr4~chr2 183522314 108148005 2 ++ 0.693147 2 1 1 2 4 TCGA-VT-A80J-02A-11R-A41I-07 ODZ3~AC096669.3 fusion "ODZ3," "AC096669.3," chr4~chr2 183522314 108171589 9 ++ 1.735126 6 3 3 6 30 TCGA-VT-A80J-02A-11R-A41I-07 PFKP~Nchr10~4549934 intergenic "PFKP," "-," chr10~chr10 3124653 4549934 2 ++ 0.693147 2 0 2 2 2 TCGA-VT-A80J-02A-11R-A41I-07 PNPLA8~Nchr7~96356972 intergenic "PNPLA8," "-," chr7~chr7 108166473 96356972 14 -- 2.143952 12 9 3 12 338 TCGA-VT-A80J-02A-11R-A41I-07 PNPLA8~Nchr7~96504872 intergenic "PNPLA8," "-," chr7~chr7 108166473 96504872 11 -- 1.499031 6 5 1 6 6 TCGA-VT-A80J-02A-11R-A41I-07 PNPLA8~SHFM1 fusion "PNPLA8," "SHFM1," chr7~chr7 108166473 96324203 31 -- 2.480816 26 16 10 26 314 TCGA-VT-A80J-02A-11R-A41I-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 5 ++ 1.05492 5 4 1 5 4 TCGA-VT-A80J-02A-11R-A41I-07 SENP5~Nchr3~197035775 intergenic "SENP5," "-," chr3~chr3 196594944 197035775 10 ++ 1.470808 10 3 7 10 20 TCGA-VT-A80J-02A-11R-A41I-07 SP3~Nchr2~174831965 intergenic "SP3," "-," chr2~chr2 174829133 174831965 4 -+ 1.386294 4 4 0 4 18 TCGA-VT-A80J-02A-11R-A41I-07 UBE2Q2~C15orf27 fusion "UBE2Q2," "C15orf27," chr15~chr15 76136187 76426509 10 ++ 1.834372 9 3 6 9 18 TCGA-VT-A80J-02A-11R-A41I-07 VEZT~AC002463.3 fusion "VEZT," "AC002463.3," chr12~chr7 95611662 112272613 5 ++ 1.332179 5 1 4 5 4 TCGA-VT-A80J-02A-11R-A41I-07 YWHAE~AC007389.3 fusion "YWHAE," "AC007389.3," chr17~chr2 1303341 65855524 4 -- 1.039721 3 0 3 3 14 TCGA-VT-A80J-02A-11R-A41I-07 YWHAE~Nchr2~65886566 intergenic "YWHAE," "-," chr17~chr2 1303341 65886566 8 -- 1.732868 8 4 4 8 30 TCGA-VT-A80J-02A-11R-A41I-07 YWHAE~Nchr2~65889732 intergenic "YWHAE," "-," chr17~chr2 1303341 65889732 3 -- 1.098612 3 1 2 3 20 TCGA-VT-A80J-02A-11R-A41I-07 YWHAE~Nchr2~66506289 intergenic "YWHAE," "-," chr17~chr2 1303341 66506289 7 -+ 1.549826 5 2 3 5 12 TCGA-VT-A80J-02A-11R-A41I-07 ZNF548~ZNF547 fusion "ZNF548," "ZNF547," chr19~chr19 57905591 57883150 27 ++ 2.736818 28 13 12 28 2 TCGA-VT-AB3D-01A-12R-A41I-07 AC096579.13~NchrY~13629437 intergenic "IGKJ2,AC096579.13," "-," chr2~chrY 89161070 13629437 113 ++ 2.750863 64 63 1 64 642 TCGA-VT-AB3D-01A-12R-A41I-07 AC096579.7~Nchr14~106134679 intergenic "IGKC,AC096579.7," "-," chr2~chr14 89156855 106134679 2 +- 0.693147 2 2 0 2 2 TCGA-VT-AB3D-01A-12R-A41I-07 AE000659.4~AE000661.28 fusion "AE000659.4," "AE000661.28,TRAC," chr14~chr14 22447180 23016447 2 ++ 0.693147 2 1 1 2 10 TCGA-VT-AB3D-01A-12R-A41I-07 BBS9~Nchr7~33900207 intergenic "BBS9," "-," chr7~chr7 33644587 33900207 2 ++ 0.693147 1 0 1 1 6 TCGA-VT-AB3D-01A-12R-A41I-07 BCL9~C1orf21 fusion "BCL9," "C1orf21," chr1~chr1 147087702 184588652 8 ++ 1.494175 8 2 6 8 24 TCGA-VT-AB3D-01A-12R-A41I-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489818 32552111 2 -- 0.693147 1 0 1 1 462 TCGA-VT-AB3D-01A-12R-A41I-07 IGHV3-23~IGHG3 fusion "IGHV3-23," "IGHG3," chr14~chr14 106725609 106237742 3 -- 0.636514 3 3 0 3 40 TCGA-VT-AB3D-01A-12R-A41I-07 IGHV4-34~IGHG1 fusion "IGHV4-34," "IGHG1," chr14~chr14 106829809 106209407 10 -- 1.695743 10 2 8 10 20 TCGA-VT-AB3D-01A-12R-A41I-07 IGKV5-2~AC096579.7 fusion "IGKV5-2," "IGKC,AC096579.7," chr2~chr2 89197212 89157196 10 +- 1.695743 9 6 3 9 16 TCGA-VT-AB3D-01A-12R-A41I-07 IGLL5~Nchr22~23257852 intergenic "IGLL5,IGLC1," "-," chr22~chr22 23237566 23257852 28 -- 1.617096 1 0 0 1 14 TCGA-VT-AB3D-01A-12R-A41I-07 LDLRAD3~Nchr10~31070505 intergenic "LDLRAD3," "-," chr11~chr10 36217876 31070505 2 -+ 0.693147 2 0 2 2 8 TCGA-VT-AB3D-01A-12R-A41I-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 18 -+ 2.212257 9 0 9 9 4 TCGA-VT-AB3D-01A-12R-A41I-07 Nchr12~58902455~RP11-362K2.2 intergenic "-," "RP11-362K2.2," chr12~chr12 58902455 59206443 8 -- 0.562335 8 2 6 8 82 TCGA-VT-AB3D-01A-12R-A41I-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 41 -+ 2.838272 37 20 17 37 216 TCGA-VT-AB3D-01A-12R-A41I-07 Nchr7~142190753~Nchr7~142498725 intergenic "-," "-," chr7~chr7 142190753 142498725 2 -+ 0.693147 2 1 1 2 4 TCGA-VT-AB3D-01A-12R-A41I-07 Nchr9~85111773~Nchr9~85394794 intergenic "-," "-," chr9~chr9 85111773 85394794 8 ++ 1.494175 8 1 7 8 26 TCGA-VT-AB3D-01A-12R-A41I-07 RP11-288D9.1~PTPRQ fusion "RP11-288D9.1," "PTPRQ," chr12~chr12 80849275 80862489 4 -+ 1.386294 3 3 0 3 4 TCGA-VT-AB3D-01A-12R-A41I-07 SHANK3~Nchr1~171435771 intergenic "SHANK3," "-," chr22~chr1 51160865 171435771 3 ++ 1.098612 3 1 2 3 10 TCGA-VT-AB3D-01A-12R-A41I-07 UHRF2~RP11-307L3.4 fusion "UHRF2," "RP11-307L3.4," chr9~chr9 6460791 6415563 11 +- 1.12095 11 10 1 11 12 TCGA-VT-AB3D-01A-12R-A41I-07 WBP11~Nchr12~20473796 intergenic "WBP11," "-," chr12~chr12 14956286 20473796 3 -- 1.098612 3 1 2 3 4 TCGA-DX-A8BG-01A-12R-A41I-07 AATF~AP2B1 fusion "AATF," "AP2B1," chr17~chr17 35311207 34037253 52 ++ 2.760894 51 27 24 51 88 TCGA-DX-A8BG-01A-12R-A41I-07 AATF~AP2B1 fusion "AATF," "AP2B1," chr17~chr17 35311207 34044214 2 ++ 0.693147 2 2 0 2 36 TCGA-DX-A8BG-01A-12R-A41I-07 ARID3B~Nchr15~68827934 intergenic "ARID3B," "-," chr15~chr15 74882344 68827934 13 ++ 2.245035 9 7 2 9 36 TCGA-DX-A8BG-01A-12R-A41I-07 C17orf101~AC091172.1 fusion "C17orf101," "AC091172.1," chr17~chr17 80373274 40113400 5 -+ 1.332179 5 4 1 5 32 TCGA-DX-A8BG-01A-12R-A41I-07 C17orf101~AC091172.1 fusion "C17orf101," "AC091172.1," chr17~chr17 80373282 40113400 3 -+ 1.098612 3 2 1 3 26 TCGA-DX-A8BG-01A-12R-A41I-07 C1orf70~NMNAT1 fusion "C1orf70," "NMNAT1," chr1~chr1 1475064 10032076 2 -+ 0.693147 2 0 2 2 2 TCGA-DX-A8BG-01A-12R-A41I-07 CORO2B~Nchr15~72764374 intergenic "CORO2B," "-," chr15~chr15 68937699 72764374 8 +- 1.906155 6 2 4 6 46 TCGA-DX-A8BG-01A-12R-A41I-07 CORO2B~Nchr15~88368632 intergenic "CORO2B," "-," chr15~chr15 68937699 88368632 5 ++ 1.609438 5 4 1 5 16 TCGA-DX-A8BG-01A-12R-A41I-07 DYM~CCDC11 fusion "DYM," "CCDC11," chr18~chr18 46623772 47753979 6 -- 1.56071 5 1 4 5 18 TCGA-DX-A8BG-01A-12R-A41I-07 FAM70A~NchrX~128766190 intergenic "FAM70A," "-," chrX~chrX 119410740 128766190 3 -+ 1.098612 3 1 2 3 16 TCGA-DX-A8BG-01A-12R-A41I-07 FER~COMMD10 fusion "FER," "COMMD10," chr5~chr5 108171508 115627214 11 ++ 1.84622 10 5 5 10 12 TCGA-DX-A8BG-01A-12R-A41I-07 IGHV3-43~IGHG1 fusion "IGHV3-43," "IGHG1," chr14~chr14 106926599 106209407 24 -- 2.405342 24 5 19 24 152 TCGA-DX-A8BG-01A-12R-A41I-07 IGHV3-53~IGHG1 fusion "IGHV3-53," "IGHG1," chr14~chr14 107049075 106209407 7 -- 1.549826 7 1 6 7 494 TCGA-DX-A8BG-01A-12R-A41I-07 IVNS1ABP~Nchr14~48151919 intergenic "IVNS1ABP," "-," chr1~chr14 185286085 48151919 8 -- 1.386294 8 8 0 8 14 TCGA-DX-A8BG-01A-12R-A41I-07 IVNS1ABP~Nchr14~48184810 intergenic "IVNS1ABP," "-," chr1~chr14 185286085 48184810 8 -- 1.906155 8 3 5 8 16 TCGA-DX-A8BG-01A-12R-A41I-07 KB-7G2.5~Nchr6~19490756 intergenic "KB-7G2.5," "-," chr22~chr6 17150352 19490756 8 -+ 1.732868 7 1 6 7 8 TCGA-DX-A8BG-01A-12R-A41I-07 NCRNA00238~Nchr14~66724179 intergenic "NCRNA00238," "-," chr14~chr14 66962980 66724179 2 -- 0.693147 2 1 1 2 8 TCGA-DX-A8BG-01A-12R-A41I-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 70 -+ 2.562496 40 0 40 40 24 TCGA-DX-A8BG-01A-12R-A41I-07 Nchr13~77010896~Nchr13~76774170 intergenic "-," "-," chr13~chr13 77010896 76774170 5 -- 1.332179 2 2 0 2 8 TCGA-DX-A8BG-01A-12R-A41I-07 Nchr13~77303480~Nchr13~77011004 intergenic "-," "-," chr13~chr13 77303480 77011004 6 -- 1.791759 3 0 3 3 6 TCGA-DX-A8BG-01A-12R-A41I-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 67 -+ 2.997703 66 49 17 66 166 TCGA-DX-A8BG-01A-12R-A41I-07 Nchr6~82767656~RP11-379B8.1 intergenic "-," "RP11-379B8.1," chr6~chr6 82767656 82555626 5 -- 1.332179 5 1 4 5 6 TCGA-DX-A8BG-01A-12R-A41I-07 Nchr7~47195403~AC004901.1 intergenic "-," "AC004901.1," chr7~chr7 47195403 46977095 5 -- 1.609438 4 2 2 4 8 TCGA-DX-A8BG-01A-12R-A41I-07 PDGFA~SUN1 fusion "PDGFA," "GET4,SUN1,GET4," chr7~chr7 558576 925693 12 -+ 1.791759 12 5 7 12 34 TCGA-DX-A8BG-01A-12R-A41I-07 PHF21A~Nchr11~37292218 intergenic "PHF21A," "-," chr11~chr11 46098305 37292218 3 -- 1.098612 2 1 1 2 2 TCGA-DX-A8BG-01A-12R-A41I-07 RP11-108M21.1~Nchr1~187984854 intergenic "RP11-108M21.1," "-," chr1~chr1 187062078 187984854 3 +- 1.098612 3 1 2 3 2 TCGA-DX-A8BG-01A-12R-A41I-07 RP11-357C3.3~PCDH11X fusion "RP11-357C3.3," "PCDH11X," chrX~chrX 62780712 91456374 9 -+ 1.889159 5 5 0 5 8 TCGA-DX-A8BG-01A-12R-A41I-07 STAT1~SUMO1 fusion "STAT1," "SUMO1," chr2~chr2 191839556 203075529 681 -- 2.925114 577 313 254 577 772 TCGA-DX-A8BG-01A-12R-A41I-07 SUN1~Nchr7~379386 intergenic "GET4,SUN1,GET4," "-," chr7~chr7 927156 379386 6 ++ 1.329661 6 1 5 6 12 TCGA-DX-A8BG-01A-12R-A41I-07 TMEM48~Nchr1~55429016 intergenic "TMEM48," "-," chr1~chr1 54272098 55429016 2 -+ 0.693147 2 2 0 2 2 TCGA-DX-A8BG-01A-12R-A41I-07 TPR~Nchr1~187061957 intergenic "TPR," "-," chr1~chr1 186337018 187061957 6 -+ 1.011404 6 5 1 6 34 TCGA-DX-A8BG-01A-12R-A41I-07 TUFT1~Nchr1~194353577 intergenic "TUFT1," "-," chr1~chr1 151538704 194353577 5 +- 1.332179 5 3 2 5 32 TCGA-DX-A8BG-01A-12R-A41I-07 UBE2R2~KIAA1797 fusion "UBE2R2," "KIAA1797," chr9~chr9 33817932 20993252 24 ++ 2.751916 23 17 6 23 48 TCGA-DX-AATS-01A-12R-A41I-07 AACS~GPR123 fusion "AACS," "GPR123," chr12~chr10 125576069 134944773 9 ++ 1.889159 9 2 7 9 20 TCGA-DX-AATS-01A-12R-A41I-07 ACSF3~ZNF483 fusion "ACSF3," "ZNF483," chr16~chr9 89212457 114338645 8 ++ 2.079442 8 4 4 8 16 TCGA-DX-AATS-01A-12R-A41I-07 AHI1~Nchr6~130935225 intergenic "AHI1," "-," chr6~chr6 135715914 130935225 9 -- 2.197225 5 3 2 5 18 TCGA-DX-AATS-01A-12R-A41I-07 APP~Nchr21~19961938 intergenic "APP," "-," chr21~chr21 27326904 19961938 3 -- 1.098612 3 2 1 3 18 TCGA-DX-AATS-01A-12R-A41I-07 APP~Nchr21~19961946 intergenic "APP," "-," chr21~chr21 27326904 19961946 3 -- 0.636514 2 2 0 2 18 TCGA-DX-AATS-01A-12R-A41I-07 BCL10~DPYD fusion "BCL10," "DPYD," chr1~chr1 85741979 98015300 2 -- 0.693147 2 1 1 2 16 TCGA-DX-AATS-01A-12R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272682 94034015 2 -+ 0.693147 1 1 0 1 10 TCGA-DX-AATS-01A-12R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264853 94038119 2 -+ 0.693147 2 1 1 2 22 TCGA-DX-AATS-01A-12R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272601 94043553 3 -+ 0.636514 2 1 1 2 4 TCGA-DX-AATS-01A-12R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272082 94047811 2 -+ 0.693147 1 0 1 1 30 TCGA-DX-AATS-01A-12R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273301 94053739 2 -+ 0.693147 1 0 1 1 34 TCGA-DX-AATS-01A-12R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94054429 3 -+ 1.098612 3 2 1 3 138 TCGA-DX-AATS-01A-12R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271304 94055762 3 -+ 1.098612 3 3 0 3 28 TCGA-DX-AATS-01A-12R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266546 94055790 2 -+ 0.693147 2 2 0 2 44 TCGA-DX-AATS-01A-12R-A41I-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266738 189868137 3 -+ 1.098612 2 2 0 2 10 TCGA-DX-AATS-01A-12R-A41I-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94045815 48266371 6 +- 1.011404 5 0 5 5 40 TCGA-DX-AATS-01A-12R-A41I-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94035615 48266371 3 +- 1.098612 3 0 3 3 10 TCGA-DX-AATS-01A-12R-A41I-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047143 48268285 3 +- 0.636514 3 3 0 3 24 TCGA-DX-AATS-01A-12R-A41I-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189864303 94047036 2 ++ 0.693147 2 1 1 2 6 TCGA-DX-AATS-01A-12R-A41I-07 CPS1~PLEKHM3 fusion "CPS1," "PLEKHM3," chr2~chr2 211481265 208693220 4 +- 1.386294 2 2 0 2 6 TCGA-DX-AATS-01A-12R-A41I-07 DLG1~WDR60 fusion "DLG1," "WDR60," chr3~chr7 196807922 158711431 5 -+ 0.950271 5 1 4 5 20 TCGA-DX-AATS-01A-12R-A41I-07 DOPEY1~Nchr6~71094240 intergenic "DOPEY1," "-," chr6~chr6 83777498 71094240 3 ++ 1.098612 2 2 0 2 148 TCGA-DX-AATS-01A-12R-A41I-07 DOPEY1~Nchr6~71098951 intergenic "DOPEY1," "-," chr6~chr6 83777498 71098951 23 ++ 2.318201 23 22 1 23 142 TCGA-DX-AATS-01A-12R-A41I-07 DOPEY1~Nchr6~71101148 intergenic "DOPEY1," "-," chr6~chr6 83777498 71101148 9 ++ 1.676988 9 9 0 9 86 TCGA-DX-AATS-01A-12R-A41I-07 DOPEY1~Nchr6~71103836 intergenic "DOPEY1," "-," chr6~chr6 83777498 71103836 8 ++ 1.906155 8 8 0 8 40 TCGA-DX-AATS-01A-12R-A41I-07 DYM~OAS3 fusion "DYM," "OAS3," chr18~chr12 46986768 113379375 6 -+ 1.329661 6 4 2 6 6 TCGA-DX-AATS-01A-12R-A41I-07 ESCO1~Nchr18~8522457 intergenic "ESCO1," "-," chr18~chr18 19112434 8522457 9 -+ 2.043192 9 2 7 9 26 TCGA-DX-AATS-01A-12R-A41I-07 FAM120A~SUSD1 fusion "FAM120A," "SUSD1," chr9~chr9 96289524 114804240 7 +- 1.94591 7 2 5 7 22 TCGA-DX-AATS-01A-12R-A41I-07 FAM135A~GRM1 fusion "FAM135A," "GRM1," chr6~chr6 71212494 146348784 6 ++ 1.56071 6 2 4 6 16 TCGA-DX-AATS-01A-12R-A41I-07 GNL2~Nchr1~83368536 intergenic "GNL2," "-," chr1~chr1 38039944 83368536 12 -+ 1.698783 12 12 0 12 52 TCGA-DX-AATS-01A-12R-A41I-07 GTF2H3~EIF2B1 fusion "GTF2H3," "EIF2B1," chr12~chr12 124130108 124107308 2 +- 0.693147 2 1 1 2 28 TCGA-DX-AATS-01A-12R-A41I-07 GTF2H3~EIF2B1 fusion "GTF2H3," "EIF2B1," chr12~chr12 124130108 124109409 18 +- 2.274241 18 10 8 18 76 TCGA-DX-AATS-01A-12R-A41I-07 HN1~Nchr2~174296244 intergenic "HN1," "-," chr17~chr2 73143651 174296244 6 -- 1.098612 3 3 0 3 2 TCGA-DX-AATS-01A-12R-A41I-07 KDM4A~FAF1 fusion "KDM4A," "FAF1," chr1~chr1 44163684 50957473 5 +- 1.332179 5 4 1 5 4 TCGA-DX-AATS-01A-12R-A41I-07 KIRREL~Nchr1~165688412 intergenic "KIRREL," "-," chr1~chr1 157963518 165688412 4 +- 1.039721 4 0 4 4 28 TCGA-DX-AATS-01A-12R-A41I-07 NASP~AP4B1 fusion "NASP," "AP4B1," chr1~chr1 46056942 114447415 2 +- 0.693147 2 2 0 2 2 TCGA-DX-AATS-01A-12R-A41I-07 NEO1~BBS4 fusion "NEO1," "BBS4," chr15~chr15 73428368 73002041 3 ++ 1.098612 3 3 0 3 8 TCGA-DX-AATS-01A-12R-A41I-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 40 -+ 2.282462 22 0 22 22 20 TCGA-DX-AATS-01A-12R-A41I-07 Nchr14~90085372~FOXN3 intergenic "-," "FOXN3," chr14~chr14 90085372 89878834 2 -- 0.693147 2 2 0 2 2 TCGA-DX-AATS-01A-12R-A41I-07 Nchr15~21904745~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21904745 20876597 7 -- 1.747868 7 3 4 7 18 TCGA-DX-AATS-01A-12R-A41I-07 Nchr15~21905473~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21905473 20876597 81 -- 2.912949 75 23 52 75 588 TCGA-DX-AATS-01A-12R-A41I-07 Nchr15~21905477~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21905477 20876597 182 -- 3.151518 172 73 99 172 570 TCGA-DX-AATS-01A-12R-A41I-07 Nchr17~22069237~Nchr15~20876597 intergenic "-," "-," chr17~chr15 22069237 20876597 18 -- 1.748547 16 16 0 16 84 TCGA-DX-AATS-01A-12R-A41I-07 Nchr17~22069241~Nchr15~20876597 intergenic "-," "-," chr17~chr15 22069241 20876597 32 -- 1.921902 31 31 0 31 66 TCGA-DX-AATS-01A-12R-A41I-07 Nchr18~26814842~Nchr18~19942942 intergenic "-," "-," chr18~chr18 26814842 19942942 7 -- 1.549826 6 1 5 6 14 TCGA-DX-AATS-01A-12R-A41I-07 Nchr18~26814842~Nchr18~19943816 intergenic "-," "-," chr18~chr18 26814842 19943816 3 -- 1.098612 3 3 0 3 10 TCGA-DX-AATS-01A-12R-A41I-07 Nchr18~26814842~Nchr18~19963410 intergenic "-," "-," chr18~chr18 26814842 19963410 14 -- 1.772139 13 11 2 13 38 TCGA-DX-AATS-01A-12R-A41I-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 20 -- 2.345737 11 1 10 11 34 TCGA-DX-AATS-01A-12R-A41I-07 Nchr1~10507~CNGA1 intergenic "-," "CNGA1," chr1~chr4 10507 47954720 3 -- 0.636514 3 0 3 3 12 TCGA-DX-AATS-01A-12R-A41I-07 Nchr1~10507~CNGA1 intergenic "-," "CNGA1," chr1~chr4 10507 47983517 6 -- 1.56071 6 0 6 6 24 TCGA-DX-AATS-01A-12R-A41I-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 9 -+ 1.581094 9 5 4 9 114 TCGA-DX-AATS-01A-12R-A41I-07 Nchr2~81709228~Nchr2~82049394 intergenic "-," "-," chr2~chr2 81709228 82049394 2 ++ 0.693147 1 0 1 1 44 TCGA-DX-AATS-01A-12R-A41I-07 Nchr2~81709228~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81709228 82075877 5 ++ 1.609438 5 4 1 5 40 TCGA-DX-AATS-01A-12R-A41I-07 Nchr2~81775871~Nchr2~82049394 intergenic "-," "-," chr2~chr2 81775871 82049394 6 ++ 1.791759 3 1 2 3 106 TCGA-DX-AATS-01A-12R-A41I-07 Nchr2~81775871~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81775871 82075877 36 ++ 2.870741 28 14 14 28 102 TCGA-DX-AATS-01A-12R-A41I-07 Nchr2~81806733~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81806733 82075877 2 ++ 0.693147 2 2 0 2 104 TCGA-DX-AATS-01A-12R-A41I-07 Nchr6~120793248~Nchr6~121027536 intergenic "-," "-," chr6~chr6 120793248 121027536 8 ++ 1.494175 8 0 8 8 2 TCGA-DX-AATS-01A-12R-A41I-07 Nchr6~86756136~BAI3 intergenic "-," "BAI3," chr6~chr6 86756136 70064125 16 ++ 2.079442 13 13 0 13 72 TCGA-DX-AATS-01A-12R-A41I-07 Nchr6~86777402~BAI3 intergenic "-," "BAI3," chr6~chr6 86777402 70064125 54 ++ 2.794141 45 15 29 45 160 TCGA-DX-AATS-01A-12R-A41I-07 Nchr6~86777402~Nchr6~100701248 intergenic "-," "-," chr6~chr6 86777402 100701248 8 ++ 1.559581 8 5 3 8 478 TCGA-DX-AATS-01A-12R-A41I-07 POP4~Nchr19~30086507 intergenic "POP4," "-," chr19~chr19 30103085 30086507 6 +- 1.329661 5 5 0 5 18 TCGA-DX-AATS-01A-12R-A41I-07 PPP2R4~MUSK fusion "PPP2R4," "MUSK," chr9~chr9 131904831 113509921 2 ++ 0.693147 2 1 1 2 10 TCGA-DX-AATS-01A-12R-A41I-07 RABGAP1~Nchr16~86306537 intergenic "RABGAP1," "-," chr9~chr16 125748698 86306537 3 ++ 0.636514 3 0 3 3 10 TCGA-DX-AATS-01A-12R-A41I-07 RBM6~Nchr1~248362579 intergenic "RBM6," "-," chr3~chr1 50106197 248362579 2 +- 0.693147 2 2 0 2 8 TCGA-DX-AATS-01A-12R-A41I-07 ROCK1~Nchr18~26816690 intergenic "ROCK1," "-," chr18~chr18 18691436 26816690 5 -- 1.332179 4 1 3 4 40 TCGA-DX-AATS-01A-12R-A41I-07 ROD1~Nchr16~85379178 intergenic "ROD1," "-," chr9~chr16 114997100 85379178 2 -- 0.693147 2 1 1 2 8 TCGA-DX-AATS-01A-12R-A41I-07 ROR2~Nchr9~109532043 intergenic "ROR2," "-," chr9~chr9 94645540 109532043 4 -+ 1.386294 3 1 2 3 16 TCGA-DX-AATS-01A-12R-A41I-07 ROR2~Nchr9~109532043 intergenic "ROR2," "-," chr9~chr9 94712149 109532043 5 -+ 1.332179 5 0 5 5 16 TCGA-DX-AATS-01A-12R-A41I-07 RP11-14N7.2~Nchr7~153276373 intergenic "RP11-14N7.2," "-," chr1~chr7 148932920 153276373 2 +- 0.693147 2 0 2 2 4 TCGA-DX-AATS-01A-12R-A41I-07 RP11-522N14.1~SH3BP4 fusion "ZNF664,ZNF664,RP11-522N14.1,ZNF664,RP11-522N14.1,ZNF664," "SH3BP4," chr12~chr2 124458567 235903947 3 ++ 1.098612 3 1 2 3 4 TCGA-DX-AATS-01A-12R-A41I-07 RRAGC~Nchr1~51662902 intergenic "RRAGC," "-," chr1~chr1 39317287 51662902 2 -+ 0.693147 2 1 1 2 6 TCGA-DX-AATS-01A-12R-A41I-07 RSRC2~Nchr2~239618317 intergenic "RSRC2," "-," chr12~chr2 123005932 239618317 18 -- 2.245172 16 0 16 16 80 TCGA-DX-AATS-01A-12R-A41I-07 RTCD1~Nchr1~73964212 intergenic "RTCD1," "-," chr1~chr1 100742872 73964212 10 ++ 2.163956 10 6 4 10 4 TCGA-DX-AATS-01A-12R-A41I-07 SENP6~BAI3 fusion "SENP6," "BAI3," chr6~chr6 76312292 70064125 14 ++ 2.044931 14 11 3 14 30 TCGA-DX-AATS-01A-12R-A41I-07 SENP6~Nchr6~86756011 intergenic "SENP6," "-," chr6~chr6 76312292 86756011 5 ++ 0.500402 2 0 2 2 292 TCGA-DX-AATS-01A-12R-A41I-07 SENP6~Nchr6~86777311 intergenic "SENP6," "-," chr6~chr6 76312292 86777311 2 ++ 0.693147 1 1 0 1 40 TCGA-DX-AATS-01A-12R-A41I-07 SS18~ZNF521 fusion "SS18," "ZNF521," chr18~chr18 23667465 22672045 2 -- 0.693147 2 1 1 2 4 TCGA-DX-AATS-01A-12R-A41I-07 SS18~ZNF521 fusion "SS18," "ZNF521," chr18~chr18 23658040 22672045 5 -- 1.332179 5 4 1 5 12 TCGA-DX-AATS-01A-12R-A41I-07 SS18~ZNF521 fusion "SS18," "ZNF521," chr18~chr18 23658040 22727102 2 -- 0.693147 2 1 1 2 8 TCGA-DX-AATS-01A-12R-A41I-07 TPST1~GS1-124K5.4 fusion "TPST1," "GS1-124K5.4," chr7~chr7 65751696 65960242 2 ++ 0.693147 2 1 1 2 10 TCGA-DX-AATS-01A-12R-A41I-07 TRAK2~AP1S3 fusion "TRAK2," "AP1S3," chr2~chr2 202285140 224642586 7 -- 1.277034 7 5 2 7 2 TCGA-DX-AATS-01A-12R-A41I-07 UBR2~CDKAL1 fusion "UBR2," "CDKAL1," chr6~chr6 42626562 20548824 10 ++ 1.609438 9 2 7 9 22 TCGA-DX-AATS-01A-12R-A41I-07 WDFY1~KIAA1486 fusion "WDFY1," "KIAA1486," chr2~chr2 224809865 226516148 2 -+ 0.693147 2 2 0 2 6 TCGA-DX-AATS-01A-12R-A41I-07 ZCCHC24~CTD-3179P9.1 fusion "ZCCHC24," "CTD-3179P9.1," chr10~chr5 81192314 117601049 13 -+ 2.057898 13 3 10 13 86 TCGA-DX-AB3B-01A-11R-A41I-07 AC011497.1~Nchr19~43155239 intergenic "AC011497.1," "-," chr19~chr19 42929356 43155239 6 ++ 1.329661 2 0 2 2 6 TCGA-DX-AB3B-01A-11R-A41I-07 BBS9~Nchr7~33900207 intergenic "BBS9," "-," chr7~chr7 33644587 33900207 2 ++ 0.693147 2 0 2 2 6 TCGA-DX-AB3B-01A-11R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94042395 2 -+ 0.693147 2 2 0 2 16 TCGA-DX-AB3B-01A-11R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267370 94045799 3 -+ 0.636514 2 1 1 2 32 TCGA-DX-AB3B-01A-11R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264376 94050330 6 -+ 1.329661 3 3 0 3 28 TCGA-DX-AB3B-01A-11R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48265944 94053739 3 -+ 1.098612 2 1 1 2 48 TCGA-DX-AB3B-01A-11R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271304 94055762 3 -+ 1.098612 3 3 0 3 18 TCGA-DX-AB3B-01A-11R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272410 94055769 3 -+ 0.636514 3 2 1 3 20 TCGA-DX-AB3B-01A-11R-A41I-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049598 48265998 2 +- 0.693147 1 0 1 1 22 TCGA-DX-AB3B-01A-11R-A41I-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48273560 6 +- 1.011404 5 1 4 5 30 TCGA-DX-AB3B-01A-11R-A41I-07 HN1~Nchr2~174296244 intergenic "HN1," "-," chr17~chr2 73143651 174296244 32 -- 1.1527 25 25 0 25 2 TCGA-DX-AB3B-01A-11R-A41I-07 Nchr10~47655224~ZNF488 intergenic "-," "ZNF488," chr10~chr10 47655224 48359418 5 -- 1.332179 2 2 0 2 2 TCGA-DX-AB3B-01A-11R-A41I-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 61 -+ 2.516148 36 0 36 36 2 TCGA-DX-AB3B-01A-11R-A41I-07 Nchr12~85817982~Nchr12~86096659 intergenic "-," "-," chr12~chr12 85817982 86096659 5 ++ 1.332179 2 2 0 2 26 TCGA-DX-AB3B-01A-11R-A41I-07 Nchr14~58332441~SLC35F4 intergenic "-," "SLC35F4," chr14~chr14 58332441 58060842 8 -- 1.494175 8 8 0 8 20 TCGA-DX-AB3B-01A-11R-A41I-07 Nchr15~22570820~HERC2P3 intergenic "-," "HERC2P3," chr15~chr15 22570820 20588709 2 +- 0.693147 2 1 1 2 4 TCGA-DX-AB3B-01A-11R-A41I-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 13 ++ 1.884871 13 6 7 13 14 TCGA-DX-AB3B-01A-11R-A41I-07 Nchr18~42793156~Nchr18~43063198 intergenic "-," "-," chr18~chr18 42793156 43063198 3 ++ 1.098612 2 1 1 2 6 TCGA-DX-AB3B-01A-11R-A41I-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 11 -+ 1.641735 10 6 4 10 264 TCGA-DX-AB3B-01A-11R-A41I-07 Nchr2~81775871~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81775871 82075877 10 ++ 1.973001 6 1 5 6 22 TCGA-DX-AB3B-01A-11R-A41I-07 Nchr6~19535118~Nchr6~19326029 intergenic "-," "-," chr6~chr6 19535118 19326029 2 -- 0.693147 2 1 1 2 4 TCGA-DX-AB3B-01A-11R-A41I-07 Nchr6~19535127~Nchr6~19326029 intergenic "-," "-," chr6~chr6 19535127 19326029 3 -- 1.098612 3 1 2 3 4 TCGA-DX-AB3B-01A-11R-A41I-07 Nchr6~8438264~RP11-314C16.1 intergenic "-," "RP11-314C16.1," chr6~chr6 8438264 8784424 4 ++ 1.386294 4 4 0 4 26 TCGA-DX-AB3B-01A-11R-A41I-07 Nchr7~91282045~RP11-142A5.1 intergenic "-," "RP11-142A5.1," chr7~chr7 91282045 91010182 5 -- 1.332179 5 1 4 5 14 TCGA-DX-AB3B-01A-11R-A41I-07 Nchr9~31973110~Nchr9~32267638 intergenic "-," "-," chr9~chr9 31973110 32267638 3 ++ 1.098612 1 0 1 1 4 TCGA-DX-AB3B-01A-11R-A41I-07 RNF135~Nchr17~29328291 intergenic "RNF135," "-," chr17~chr17 29326664 29328291 11 -+ 1.84622 10 10 0 10 8 TCGA-DX-AB3B-01A-11R-A41I-07 RP1-45C12.1~Nchr1~170776745 intergenic "RP1-45C12.1," "-," chr1~chr1 171137243 170776745 14 -- 1.809514 9 6 3 9 8 TCGA-DX-AB3B-01A-11R-A41I-07 RP1-45C12.1~Nchr1~170833827 intergenic "RP1-45C12.1," "-," chr1~chr1 171137243 170833827 4 -- 1.039721 2 2 0 2 2 TCGA-DX-AB3B-01A-11R-A41I-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 3 +- 0.636514 3 0 3 3 2 TCGA-DX-AB3B-01A-11R-A41I-07 SS18~SSX1 fusion "SS18," "SSX1," chr18~chrX 23612363 48123217 380 -+ 3.092554 372 222 150 372 670 TCGA-DX-A8BR-01A-11R-A41I-07 AGAP3~EXOSC9 fusion "AGAP3," "EXOSC9," chr7~chr4 150784159 122722982 86 ++ 2.953555 85 60 25 85 208 TCGA-DX-A8BR-01A-11R-A41I-07 ANLN~Nchr11~80007828 intergenic "ANLN," "-," chr7~chr11 36439002 80007828 38 ++ 2.638818 37 20 17 37 164 TCGA-DX-A8BR-01A-11R-A41I-07 APLP2~Nchr11~134866713 intergenic "APLP2," "-," chr11~chr11 129939977 134866713 9 ++ 1.735126 9 1 8 9 10 TCGA-DX-A8BR-01A-11R-A41I-07 ARHGAP5~Nchr13~51270714 intergenic "ARHGAP5," "-," chr14~chr13 32563592 51270714 3 +- 1.098612 2 2 0 2 2 TCGA-DX-A8BR-01A-11R-A41I-07 ARHGEF10~RP11-13N12.1 fusion "ARHGEF10," "RP11-13N12.1," chr8~chr8 1833873 16772542 19 +- 2.201512 19 7 12 19 44 TCGA-DX-A8BR-01A-11R-A41I-07 ARID5B~Nchr3~115048145 intergenic "ARID5B," "-," chr10~chr3 63829556 115048145 169 +- 2.935038 165 142 23 165 372 TCGA-DX-A8BR-01A-11R-A41I-07 ARID5B~Nchr3~115063037 intergenic "ARID5B," "-," chr10~chr3 63829556 115063037 5 +- 1.332179 5 1 4 5 12 TCGA-DX-A8BR-01A-11R-A41I-07 C10orf26~Nchr3~94369632 intergenic "C10orf26," "-," chr10~chr3 104503900 94369632 6 ++ 1.329661 6 2 4 6 44 TCGA-DX-A8BR-01A-11R-A41I-07 C10orf26~Nchr3~94369666 intergenic "C10orf26," "-," chr10~chr3 104503900 94369666 13 ++ 2.351673 12 1 11 12 42 TCGA-DX-A8BR-01A-11R-A41I-07 C7orf44~Nchr7~27704145 intergenic "C7orf44," "-," chr7~chr7 43684850 27704145 2 -+ 0.693147 2 1 1 2 14 TCGA-DX-A8BR-01A-11R-A41I-07 CCDC14~C14orf164 fusion "CCDC14," "C14orf164," chr3~chr14 123649949 23662534 4 -+ 1.386294 4 2 2 4 8 TCGA-DX-A8BR-01A-11R-A41I-07 CLNS1A~Nchr11~78293156 intergenic "CLNS1A," "-," chr11~chr11 77348635 78293156 15 -- 1.991346 15 4 11 15 36 TCGA-DX-A8BR-01A-11R-A41I-07 DPY19L1~Nchr4~134569083 intergenic "DPY19L1," "-," chr7~chr4 34977606 134569083 2 -- 0.693147 2 0 2 2 4 TCGA-DX-A8BR-01A-11R-A41I-07 EEFSEC~CD96 fusion "EEFSEC," "CD96," chr3~chr3 127983624 111286370 2 ++ 0.693147 2 0 2 2 4 TCGA-DX-A8BR-01A-11R-A41I-07 EIF1~Nchr17~21163258 intergenic "EIF1," "-," chr17~chr17 39847063 21163258 5 ++ 0.950271 5 0 5 5 4 TCGA-DX-A8BR-01A-11R-A41I-07 EXOC4~Nchr4~155931809 intergenic "EXOC4," "-," chr7~chr4 133622822 155931809 18 +- 1.981208 13 8 5 13 62 TCGA-DX-A8BR-01A-11R-A41I-07 FNIP2~EXOC4 fusion "FNIP2," "EXOC4," chr4~chr7 159690471 133622644 7 ++ 1.747868 5 0 5 5 28 TCGA-DX-A8BR-01A-11R-A41I-07 GK5~Nchr13~56740385 intergenic "GK5," "-," chr3~chr13 141932368 56740385 13 -- 1.884871 9 7 2 9 30 TCGA-DX-A8BR-01A-11R-A41I-07 GRID2~TRPC2 fusion "GRID2," "TRPC2," chr4~chr11 94006430 3631134 3 ++ 0.636514 3 3 0 3 2 TCGA-DX-A8BR-01A-11R-A41I-07 HEATR2~Nchr3~82465271 intergenic "HEATR2," "-," chr7~chr3 769484 82465271 19 ++ 2.72555 18 16 2 18 80 TCGA-DX-A8BR-01A-11R-A41I-07 HECTD1~NSUN3 fusion "HECTD1," "RP13-503K1.4,NSUN3," chr14~chr3 31617927 93800453 4 -+ 1.039721 4 0 4 4 14 TCGA-DX-A8BR-01A-11R-A41I-07 NUMA1~Nchr10~1716959 intergenic "NUMA1," "-," chr11~chr10 71780888 1716959 3 -- 1.098612 3 1 2 3 6 TCGA-DX-A8BR-01A-11R-A41I-07 NUP205~GIMAP8 fusion "NUP205," "GIMAP8," chr7~chr7 135292119 150171100 7 ++ 1.549826 7 4 3 7 30 TCGA-DX-A8BR-01A-11R-A41I-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 109 -+ 2.638218 68 0 67 68 42 TCGA-DX-A8BR-01A-11R-A41I-07 Nchr13~50642233~FAM124A intergenic "-," "FAM124A," chr13~chr13 50642233 51814273 9 -- 2.043192 8 4 4 8 14 TCGA-DX-A8BR-01A-11R-A41I-07 Nchr13~50642233~FAM124A intergenic "-," "FAM124A," chr13~chr13 50642233 51815389 6 -- 1.56071 3 0 3 3 10 TCGA-DX-A8BR-01A-11R-A41I-07 Nchr13~50642233~FAM124A intergenic "-," "FAM124A," chr13~chr13 50642233 51853923 128 -- 2.892562 119 29 87 119 166 TCGA-DX-A8BR-01A-11R-A41I-07 Nchr13~50642233~FAM124A intergenic "-," "FAM124A," chr13~chr13 50642233 51857803 21 -- 2.416744 18 1 17 18 20 TCGA-DX-A8BR-01A-11R-A41I-07 Nchr13~50642233~Nchr13~51774953 intergenic "-," "-," chr13~chr13 50642233 51774953 6 -- 1.791759 4 2 2 4 10 TCGA-DX-A8BR-01A-11R-A41I-07 Nchr16~79619777~Nchr16~79246798 intergenic "-," "-," chr16~chr16 79619777 79246798 4 -- 1.039721 4 3 1 4 4 TCGA-DX-A8BR-01A-11R-A41I-07 Nchr18~37331293~Nchr18~37115579 intergenic "-," "-," chr18~chr18 37331293 37115579 3 -- 0.636514 2 2 0 2 12 TCGA-DX-A8BR-01A-11R-A41I-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151282 3 -- 1.098612 1 1 0 1 4 TCGA-DX-A8BR-01A-11R-A41I-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 8 -- 1.732868 7 1 6 7 12 TCGA-DX-A8BR-01A-11R-A41I-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 6 ++ 1.242453 6 1 5 6 4 TCGA-DX-A8BR-01A-11R-A41I-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 40 -+ 2.839435 34 27 7 34 276 TCGA-DX-A8BR-01A-11R-A41I-07 Nchr2~177065894~Nchr2~177066044 intergenic "-," "-," chr2~chr2 177065894 177066044 3 -- 1.098612 1 0 1 1 2 TCGA-DX-A8BR-01A-11R-A41I-07 Nchr3~115510005~Nchr3~116018482 intergenic "-," "-," chr3~chr3 115510005 116018482 2 ++ 0.693147 2 0 2 2 6 TCGA-DX-A8BR-01A-11R-A41I-07 Nchr6~127664821~ECHDC1 intergenic "-," "ECHDC1," chr6~chr6 127664821 127652175 2 +- 0.693147 2 1 1 2 18 TCGA-DX-A8BR-01A-11R-A41I-07 Nchr6~151546858~RPS12 intergenic "-," "RPS12," chr6~chr6 151546858 133138099 2 ++ 0.693147 2 1 1 2 32 TCGA-DX-A8BR-01A-11R-A41I-07 ODZ4~Nchr11~79675253 intergenic "ODZ4," "-," chr11~chr11 78775783 79675253 3 -+ 1.098612 3 1 2 3 10 TCGA-DX-A8BR-01A-11R-A41I-07 OSBPL3~ABP1 fusion "OSBPL3," "ABP1," chr7~chr7 25019505 150549203 3 -+ 1.098612 3 2 1 3 30 TCGA-DX-A8BR-01A-11R-A41I-07 OSBPL3~ABP1 fusion "OSBPL3," "ABP1," chr7~chr7 25019505 150553543 2 -+ 0.693147 2 0 2 2 14 TCGA-DX-A8BR-01A-11R-A41I-07 OSBPL3~TMEM176A fusion "OSBPL3," "TMEM176A," chr7~chr7 25019505 150501915 2 -+ 0.693147 2 1 1 2 6 TCGA-DX-A8BR-01A-11R-A41I-07 PHLDB2~Nchr3~112236855 intergenic "PHLDB2," "-," chr3~chr3 111688756 112236855 27 ++ 2.342903 26 20 6 26 110 TCGA-DX-A8BR-01A-11R-A41I-07 PRDM5~Nchr4~116554996 intergenic "PRDM5," "-," chr4~chr4 121843671 116554996 9 -- 1.889159 7 3 4 7 10 TCGA-DX-A8BR-01A-11R-A41I-07 RP11-33B1.1~CYP2U1 fusion "RP11-33B1.1," "CYP2U1," chr4~chr4 120381982 108866126 13 ++ 1.884871 13 10 3 13 4 TCGA-DX-A8BR-01A-11R-A41I-07 SEC24B~Nchr4~176250704 intergenic "SEC24B," "-," chr4~chr4 110435012 176250704 6 ++ 1.56071 4 2 2 4 44 TCGA-DX-A8BR-01A-11R-A41I-07 SEC24B~Nchr4~176250704 intergenic "SEC24B," "-," chr4~chr4 110433239 176250704 3 ++ 1.098612 2 1 1 2 16 TCGA-DX-A8BR-01A-11R-A41I-07 SGSM3~PPP6R2 fusion "SGSM3," "PPP6R2," chr22~chr22 40766692 50870694 6 ++ 1.56071 4 0 4 4 16 TCGA-DX-A8BR-01A-11R-A41I-07 SPCS3~SKAP2 fusion "SPCS3," "SKAP2," chr4~chr7 177245408 26709811 3 +- 1.098612 3 3 0 3 6 TCGA-DX-A8BR-01A-11R-A41I-07 SPCS3~SKAP2 fusion "SPCS3," "SKAP2," chr4~chr7 177245408 26729981 4 +- 1.386294 4 1 3 4 26 TCGA-DX-A8BR-01A-11R-A41I-07 TMEM106A~Nchr17~41400158 intergenic "TMEM106A," "-," chr17~chr17 41369331 41400158 2 +- 0.693147 1 1 0 1 6 TCGA-3B-A9HZ-01A-11R-A39D-07 ACTB~Nchr3~175695422 intergenic "ACTB," "-," chr7~chr3 5567635 175695422 2 -- 0.693147 1 0 1 1 12 TCGA-3B-A9HZ-01A-11R-A39D-07 ACTG2~ACTB fusion "ACTG2," "ACTB," chr2~chr7 74141998 5567816 2 +- 0.693147 2 1 1 2 16 TCGA-3B-A9HZ-01A-11R-A39D-07 C15orf57~CBX3 fusion "C15orf57," "CBX3," chr15~chr7 40854971 26241389 3 -+ 1.098612 2 0 2 2 10 TCGA-3B-A9HZ-01A-11R-A39D-07 C1orf196~KAZN fusion "C1orf196," "KAZN," chr1~chr1 14507087 14925479 6 ++ 0.867563 3 3 0 3 4 TCGA-3B-A9HZ-01A-11R-A39D-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31236696 31321960 2 -- 0.693147 1 0 1 1 1842 TCGA-3B-A9HZ-01A-11R-A39D-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238216 31324007 2 -- 0.693147 1 0 1 1 184 TCGA-3B-A9HZ-01A-11R-A39D-07 HSPB1~Nchr9~74622964 intergenic "HSPB1," "-," chr7~chr9 75933069 74622964 2 -+ 0.693147 1 1 0 1 72 TCGA-3B-A9HZ-01A-11R-A39D-07 ISOC1~Nchr5~128679362 intergenic "ISOC1," "-," chr5~chr5 128442755 128679362 3 ++ 0.636514 3 1 2 3 10 TCGA-3B-A9HZ-01A-11R-A39D-07 Nchr11~65190797~Nchr11~65190900 intergenic "-," "-," chr11~chr11 65190797 65190900 4 -- 1.386294 4 0 4 4 2 TCGA-3B-A9HZ-01A-11R-A39D-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 79 -+ 2.641475 36 0 36 36 74 TCGA-3B-A9HZ-01A-11R-A39D-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 34 -+ 2.827818 33 18 15 33 218 TCGA-3B-A9HZ-01A-11R-A39D-07 PACRGL~Nchr4~19539790 intergenic "PACRGL," "-," chr4~chr4 20709493 19539790 25 +- 2.375832 24 3 21 24 74 TCGA-3B-A9HZ-01A-11R-A39D-07 RB1~Nchr14~26853730 intergenic "RB1," "-," chr13~chr14 48955579 26853730 10 ++ 2.163956 9 5 4 9 12 TCGA-3B-A9HZ-01A-11R-A39D-07 RNF217~RSPO3 fusion "RNF217," "RSPO3," chr6~chr6 125284572 127516968 12 ++ 2.138333 10 6 4 10 54 TCGA-3B-A9HZ-01A-11R-A39D-07 RP11-335L9.1~Nchr3~177483365 intergenic "RP11-335L9.1," "-," chr3~chr3 177257281 177483365 6 ++ 1.791759 4 1 3 4 6 TCGA-3B-A9HZ-01A-11R-A39D-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 2 ++ 0.693147 2 2 0 2 8 TCGA-3B-A9HZ-01A-11R-A39D-07 VGLL4~AC090939.1 fusion "VGLL4," "AC090939.1," chr3~chr3 11744445 11763407 3 -- 1.098612 3 1 2 3 2 TCGA-DX-AB3A-01A-11R-A41I-07 AC011497.1~Nchr19~43155239 intergenic "AC011497.1," "-," chr19~chr19 42929356 43155239 3 ++ 0.636514 3 3 0 3 10 TCGA-DX-AB3A-01A-11R-A41I-07 ACP6~PIAS3 fusion "ACP6," "PIAS3," chr1~chr1 147141952 145578062 7 -+ 1.475076 7 3 4 7 8 TCGA-DX-AB3A-01A-11R-A41I-07 APC~Nchr5~119222059 intergenic "APC," "-," chr5~chr5 112116568 119222059 39 +- 2.558422 38 27 11 38 108 TCGA-DX-AB3A-01A-11R-A41I-07 APC~Nchr5~119225037 intergenic "APC," "-," chr5~chr5 112116600 119225037 57 +- 2.493319 57 29 27 57 60 TCGA-DX-AB3A-01A-11R-A41I-07 APPBP2~Nchr5~173305670 intergenic "APPBP2," "-," chr17~chr5 58556509 173305670 79 -+ 2.823009 78 28 50 78 304 TCGA-DX-AB3A-01A-11R-A41I-07 APPBP2~Nchr5~173737608 intergenic "APPBP2," "-," chr17~chr5 58556509 173737608 144 -- 3.00088 138 100 38 138 160 TCGA-DX-AB3A-01A-11R-A41I-07 APPBP2~Nchr5~173743946 intergenic "APPBP2," "-," chr17~chr5 58545800 173743946 5 -- 1.609438 5 3 2 5 354 TCGA-DX-AB3A-01A-11R-A41I-07 APPBP2~Nchr5~173743946 intergenic "APPBP2," "-," chr17~chr5 58556509 173743946 150 -- 2.834928 145 101 44 145 318 TCGA-DX-AB3A-01A-11R-A41I-07 BCAS3~Nchr1~71929014 intergenic "BCAS3," "-," chr17~chr1 58786686 71929014 10 ++ 1.886697 10 8 2 10 28 TCGA-DX-AB3A-01A-11R-A41I-07 C17orf106~CYP2J2 fusion "AC040980.1,C17orf106," "CYP2J2," chr17~chr1 73975592 60381772 29 +- 2.87122 29 11 18 29 52 TCGA-DX-AB3A-01A-11R-A41I-07 CACHD1~Nchr5~174041661 intergenic "CACHD1," "-," chr1~chr5 65107652 174041661 16 +- 2.306669 14 8 6 14 40 TCGA-DX-AB3A-01A-11R-A41I-07 CACHD1~USP32 fusion "CACHD1," "USP32," chr1~chr17 65107652 58422969 5 +- 1.05492 3 3 0 3 14 TCGA-DX-AB3A-01A-11R-A41I-07 CDK4~Nchr5~115363584 intergenic "CDK4," "-," chr12~chr5 58145958 115363584 4 -- 1.386294 4 1 3 4 54 TCGA-DX-AB3A-01A-11R-A41I-07 CDK4~Nchr5~115363587 intergenic "CDK4," "-," chr12~chr5 58145958 115363587 25 -- 2.788854 25 15 10 25 54 TCGA-DX-AB3A-01A-11R-A41I-07 CLIP3~Nchr1~51454272 intergenic "CLIP3," "-," chr19~chr1 36510286 51454272 4 +- 0.562335 3 3 0 3 8 TCGA-DX-AB3A-01A-11R-A41I-07 CLIP3~Nchr1~51477655 intergenic "CLIP3," "-," chr19~chr1 36510286 51477655 5 +- 1.332179 5 0 5 5 2 TCGA-DX-AB3A-01A-11R-A41I-07 COMMD10~NUP107 fusion "COMMD10," "NUP107," chr5~chr12 115428397 69135593 37 ++ 2.803131 36 22 14 36 60 TCGA-DX-AB3A-01A-11R-A41I-07 COMMD10~NUP107 fusion "COMMD10," "NUP107," chr5~chr12 115428392 69135593 3 ++ 0.636514 3 1 2 3 50 TCGA-DX-AB3A-01A-11R-A41I-07 COMMD10~Nchr12~73436362 intergenic "COMMD10," "-," chr5~chr12 115428397 73436362 3 ++ 1.098612 2 1 1 2 26 TCGA-DX-AB3A-01A-11R-A41I-07 CPEB4~RP11-267A15.1 fusion "CPEB4," "RP11-267A15.1," chr5~chr5 173337607 173809720 3 ++ 1.098612 3 1 2 3 8 TCGA-DX-AB3A-01A-11R-A41I-07 CTDSP2~COMMD10 fusion "CTDSP2," "COMMD10," chr12~chr5 58240155 115426776 19 -+ 2.579625 18 6 12 18 50 TCGA-DX-AB3A-01A-11R-A41I-07 CTDSP2~LGR5 fusion "CTDSP2," "LGR5," chr12~chr12 58240155 71898394 50 -+ 2.919885 49 11 38 49 92 TCGA-DX-AB3A-01A-11R-A41I-07 CUEDC1~LRP8 fusion "CUEDC1," "LRP8," chr17~chr1 55956972 53746387 7 -- 0.9557 7 5 2 7 20 TCGA-DX-AB3A-01A-11R-A41I-07 DHX40~CEP112 fusion "DHX40," "CEP112," chr17~chr17 57648024 64066119 3 +- 1.098612 3 1 2 3 4 TCGA-DX-AB3A-01A-11R-A41I-07 EFCAB11~Nchr14~90095480 intergenic "EFCAB11," "-," chr14~chr14 90397885 90095480 2 -- 0.693147 2 2 0 2 4 TCGA-DX-AB3A-01A-11R-A41I-07 FEM1C~Nchr2~176098747 intergenic "FEM1C," "-," chr5~chr2 114878647 176098747 6 -- 1.242453 6 3 3 6 6 TCGA-DX-AB3A-01A-11R-A41I-07 FKBP5~CPM fusion "FKBP5," "CPM," chr6~chr12 35610497 69260828 33 -- 1.811073 22 7 15 22 44 TCGA-DX-AB3A-01A-11R-A41I-07 FRS2~Nchr12~65312160 intergenic "FRS2," "-," chr12~chr12 69925836 65312160 2 +- 0.693147 2 0 2 2 8 TCGA-DX-AB3A-01A-11R-A41I-07 FRS2~Nchr12~65315446 intergenic "FRS2," "-," chr12~chr12 69931763 65315446 5 +- 0.950271 5 5 0 5 568 TCGA-DX-AB3A-01A-11R-A41I-07 FRS2~Nchr12~65347659 intergenic "FRS2," "-," chr12~chr12 69931763 65347659 2 +- 0.693147 2 0 2 2 12 TCGA-DX-AB3A-01A-11R-A41I-07 FRS2~RP11-766N7.4 fusion "FRS2," "RP11-766N7.4," chr12~chr12 69934554 65314850 20 +- 2.154783 18 8 10 18 586 TCGA-DX-AB3A-01A-11R-A41I-07 FRS2~RP11-766N7.4 fusion "FRS2," "RP11-766N7.4," chr12~chr12 69931763 65314850 216 +- 2.968641 198 70 128 198 536 TCGA-DX-AB3A-01A-11R-A41I-07 FRS2~RP11-766N7.4 fusion "FRS2," "RP11-766N7.4," chr12~chr12 69925836 65314850 79 +- 2.484732 58 18 40 58 284 TCGA-DX-AB3A-01A-11R-A41I-07 FRS2~RP11-766N7.4 fusion "FRS2," "RP11-766N7.4," chr12~chr12 69934554 65351637 4 +- 1.386294 4 2 2 4 398 TCGA-DX-AB3A-01A-11R-A41I-07 FRS2~RP11-766N7.4 fusion "FRS2," "RP11-766N7.4," chr12~chr12 69931763 65351637 80 +- 3.056825 72 44 28 72 702 TCGA-DX-AB3A-01A-11R-A41I-07 FRS2~RP11-766N7.4 fusion "FRS2," "RP11-766N7.4," chr12~chr12 69925836 65351637 8 +- 1.906155 7 3 4 7 354 TCGA-DX-AB3A-01A-11R-A41I-07 GPRIN1~TM2D1 fusion "GPRIN1," "TM2D1," chr5~chr1 176037000 62166697 18 -- 2.029155 18 18 0 18 12 TCGA-DX-AB3A-01A-11R-A41I-07 GRB10~PIP4K2C fusion "GRB10," "PIP4K2C," chr7~chr12 50737419 57987808 6 -+ 1.242453 6 2 4 6 14 TCGA-DX-AB3A-01A-11R-A41I-07 HIVEP1~Nchr6~7540769 intergenic "HIVEP1," "-," chr6~chr6 12015901 7540769 3 ++ 1.098612 3 3 0 3 6 TCGA-DX-AB3A-01A-11R-A41I-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 103 -- 2.092417 103 103 0 103 48 TCGA-DX-AB3A-01A-11R-A41I-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 58 -- 2.145197 23 7 16 23 8 TCGA-DX-AB3A-01A-11R-A41I-07 KCNMB4~Nchr12~58068435 intergenic "KCNMB4," "-," chr12~chr12 70760850 58068435 22 ++ 2.413341 21 9 12 21 50 TCGA-DX-AB3A-01A-11R-A41I-07 KCNMB4~Nchr1~147706553 intergenic "KCNMB4," "-," chr12~chr1 70761034 147706553 2 ++ 0.693147 2 2 0 2 10 TCGA-DX-AB3A-01A-11R-A41I-07 KCNMB4~Nchr1~147706553 intergenic "KCNMB4," "-," chr12~chr1 70760850 147706553 101 ++ 3.220666 100 56 42 100 218 TCGA-DX-AB3A-01A-11R-A41I-07 KPNA2~Nchr5~116938280 intergenic "KPNA2," "-," chr17~chr5 66031956 116938280 3 +- 1.098612 2 0 2 2 18 TCGA-DX-AB3A-01A-11R-A41I-07 MDM2~FGF18 fusion "MDM2," "FGF18," chr12~chr5 69214154 170883543 141 ++ 3.07406 132 70 61 132 192 TCGA-DX-AB3A-01A-11R-A41I-07 MDM2~FGF18 fusion "MDM2," "FGF18," chr12~chr5 69210725 170883543 7 ++ 1.475076 7 4 3 7 100 TCGA-DX-AB3A-01A-11R-A41I-07 MDM2~FGF18 fusion "MDM2," "FGF18," chr12~chr5 69207408 170883543 5 ++ 1.332179 5 3 2 5 26 TCGA-DX-AB3A-01A-11R-A41I-07 MDM2~FGF18 fusion "MDM2," "FGF18," chr12~chr5 69203072 170883543 4 ++ 1.039721 3 2 1 3 18 TCGA-DX-AB3A-01A-11R-A41I-07 MDM2~Nchr12~76745314 intergenic "MDM2," "-," chr12~chr12 69214154 76745314 3 ++ 1.098612 3 0 3 3 10 TCGA-DX-AB3A-01A-11R-A41I-07 MDM2~PPM1H fusion "MDM2," "PPM1H," chr12~chr12 69214154 63274433 3 +- 1.098612 2 0 2 2 12 TCGA-DX-AB3A-01A-11R-A41I-07 MDM2~PPM1H fusion "MDM2," "PPM1H," chr12~chr12 69214154 63278742 9 +- 1.735126 9 2 7 9 22 TCGA-DX-AB3A-01A-11R-A41I-07 MDM2~PPM1H fusion "MDM2," "PPM1H," chr12~chr12 69214154 63288839 4 +- 1.386294 4 1 3 4 2 TCGA-DX-AB3A-01A-11R-A41I-07 MDM2~PPM1H fusion "MDM2," "PPM1H," chr12~chr12 69214154 63305888 17 +- 2.15006 9 2 7 9 62 TCGA-DX-AB3A-01A-11R-A41I-07 MRS2~LRRIQ1 fusion "MRS2," "LRRIQ1," chr6~chr12 24418806 85656693 15 ++ 1.894312 15 13 2 15 40 TCGA-DX-AB3A-01A-11R-A41I-07 MTHFS~Nchr4~186597 intergenic "MTHFS," "-," chr15~chr4 80181435 186597 9 -- 1.676988 9 8 1 9 52 TCGA-DX-AB3A-01A-11R-A41I-07 NSD1~FGF18 fusion "NSD1," "FGF18," chr5~chr5 176684152 170876151 5 ++ 1.332179 4 2 2 4 28 TCGA-DX-AB3A-01A-11R-A41I-07 NUP210L~Nchr12~75071058 intergenic "NUP210L," "-," chr1~chr12 153973384 75071058 21 +- 2.09541 15 7 8 15 26 TCGA-DX-AB3A-01A-11R-A41I-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 83 -+ 2.409872 32 0 32 32 20 TCGA-DX-AB3A-01A-11R-A41I-07 Nchr12~76605546~Nchr21~48094453 intergenic "-," "-," chr12~chr21 76605546 48094453 4 -+ 1.386294 3 1 2 3 2 TCGA-DX-AB3A-01A-11R-A41I-07 Nchr12~85736497~KIFAP3 intergenic "-," "KIFAP3," chr12~chr1 85736497 169930376 31 +- 2.480816 27 11 16 27 60 TCGA-DX-AB3A-01A-11R-A41I-07 Nchr12~85793388~KIFAP3 intergenic "-," "KIFAP3," chr12~chr1 85793388 169890922 6 +- 1.56071 5 4 1 5 8 TCGA-DX-AB3A-01A-11R-A41I-07 Nchr12~85793388~RFWD2 intergenic "-," "RFWD2," chr12~chr1 85793388 175951577 2 ++ 0.693147 2 2 0 2 16 TCGA-DX-AB3A-01A-11R-A41I-07 Nchr12~85793388~RP11-318C24.2 intergenic "-," "RP11-318C24.2," chr12~chr1 85793388 175886064 29 ++ 2.297581 22 18 4 22 40 TCGA-DX-AB3A-01A-11R-A41I-07 Nchr12~85793904~RFWD2 intergenic "-," "RFWD2," chr12~chr1 85793904 175951540 2 ++ 0.693147 2 1 1 2 22 TCGA-DX-AB3A-01A-11R-A41I-07 Nchr12~85793904~RFWD2 intergenic "-," "RFWD2," chr12~chr1 85793904 175951577 4 ++ 1.039721 4 1 3 4 22 TCGA-DX-AB3A-01A-11R-A41I-07 Nchr12~85793904~RP11-318C24.2 intergenic "-," "RP11-318C24.2," chr12~chr1 85793904 175886064 2 ++ 0.693147 2 2 0 2 38 TCGA-DX-AB3A-01A-11R-A41I-07 Nchr14~45066112~Nchr14~44862941 intergenic "-," "-," chr14~chr14 45066112 44862941 5 -- 1.609438 3 0 3 3 8 TCGA-DX-AB3A-01A-11R-A41I-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 5 ++ 0.950271 5 1 4 5 56 TCGA-DX-AB3A-01A-11R-A41I-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 23 -+ 2.050086 22 19 3 22 114 TCGA-DX-AB3A-01A-11R-A41I-07 Nchr1~153456303~HMGA2 intergenic "-," "HMGA2," chr1~chr12 153456303 66358193 64 -- 2.764799 62 25 37 62 54 TCGA-DX-AB3A-01A-11R-A41I-07 Nchr1~73965170~Nchr5~174143112 intergenic "-," "-," chr1~chr5 73965170 174143112 3 +- 1.098612 3 1 2 3 8 TCGA-DX-AB3A-01A-11R-A41I-07 Nchr2~185007066~LASS6 intergenic "-," "LASS6," chr2~chr2 185007066 169354322 18 -- 2.110017 18 12 6 18 88 TCGA-DX-AB3A-01A-11R-A41I-07 Nchr2~185051977~LASS6 intergenic "-," "LASS6," chr2~chr2 185051977 169354322 8 -- 1.732868 5 4 1 5 30 TCGA-DX-AB3A-01A-11R-A41I-07 Nchr2~185055125~Nchr2~175594449 intergenic "-," "-," chr2~chr2 185055125 175594449 2 ++ 0.693147 2 1 1 2 14 TCGA-DX-AB3A-01A-11R-A41I-07 Nchr4~11890830~OSBPL8 intergenic "-," "OSBPL8," chr4~chr12 11890830 76852463 5 -- 1.609438 1 0 1 1 4 TCGA-DX-AB3A-01A-11R-A41I-07 Nchr5~173731059~Nchr5~173305670 intergenic "-," "-," chr5~chr5 173731059 173305670 6 -+ 1.56071 6 4 2 6 8 TCGA-DX-AB3A-01A-11R-A41I-07 Nchr5~173735102~Nchr5~173305670 intergenic "-," "-," chr5~chr5 173735102 173305670 69 -+ 2.788408 69 30 39 69 282 TCGA-DX-AB3A-01A-11R-A41I-07 Nchr5~173735139~Nchr5~173305670 intergenic "-," "-," chr5~chr5 173735139 173305670 18 -+ 2.245172 17 11 6 17 208 TCGA-DX-AB3A-01A-11R-A41I-07 Nchr5~173737486~Nchr5~173305670 intergenic "-," "-," chr5~chr5 173737486 173305670 23 -+ 2.257927 22 11 11 22 42 TCGA-DX-AB3A-01A-11R-A41I-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 3 -- 1.098612 3 3 0 3 2 TCGA-DX-AB3A-01A-11R-A41I-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 45 ++ 2.218997 41 41 0 41 10 TCGA-DX-AB3A-01A-11R-A41I-07 NchrX~146882652~C14orf156 intergenic "-," "C14orf156," chrX~chr14 146882652 78177224 2 -+ 0.693147 2 2 0 2 2 TCGA-DX-AB3A-01A-11R-A41I-07 OS9~FAM19A2 fusion "OS9,OS9," "FAM19A2," chr12~chr12 58088106 62317299 2 +- 0.693147 2 1 1 2 12 TCGA-DX-AB3A-01A-11R-A41I-07 OS9~RP11-114H23.2 fusion "OS9,OS9," "RP11-114H23.2," chr12~chr12 58088106 76088727 8 +- 1.906155 8 3 5 8 80 TCGA-DX-AB3A-01A-11R-A41I-07 OS9~RP11-114H23.2 fusion "OS9,OS9," "RP11-114H23.2," chr12~chr12 58088106 76088755 35 +- 2.535238 34 21 13 34 102 TCGA-DX-AB3A-01A-11R-A41I-07 OSBPL9~FKBP5 fusion "OSBPL9," "FKBP5," chr1~chr6 52082893 35610620 38 +- 2.427521 31 17 14 31 52 TCGA-DX-AB3A-01A-11R-A41I-07 PIAS3~BZRAP1 fusion "PIAS3," "BZRAP1," chr1~chr17 145584836 56384329 6 +- 1.56071 6 5 1 6 12 TCGA-DX-AB3A-01A-11R-A41I-07 RAB3IP~Nchr12~70385487 intergenic "RAB3IP," "-," chr12~chr12 70150443 70385487 4 ++ 1.386294 4 1 3 4 18 TCGA-DX-AB3A-01A-11R-A41I-07 RAB3IP~Nchr12~70385490 intergenic "RAB3IP," "-," chr12~chr12 70150443 70385490 2 ++ 0.693147 1 0 1 1 16 TCGA-DX-AB3A-01A-11R-A41I-07 RGL1~POU2F1 fusion "RGL1," "POU2F1," chr1~chr1 183775619 167384737 2 ++ 0.693147 2 2 0 2 6 TCGA-DX-AB3A-01A-11R-A41I-07 RP1-45C12.1~Nchr1~170776745 intergenic "RP1-45C12.1," "-," chr1~chr1 171137243 170776745 7 -- 1.747868 5 4 1 5 2 TCGA-DX-AB3A-01A-11R-A41I-07 RP11-745O10.2~ATF7 fusion "RP11-745O10.2," "ATF7," chr12~chr12 66524755 53994805 6 +- 1.242453 3 0 3 3 6 TCGA-DX-AB3A-01A-11R-A41I-07 RP11-745O10.2~KIF5A fusion "RP11-745O10.2," "KIF5A," chr12~chr12 66524755 57957222 5 ++ 1.609438 4 4 0 4 4 TCGA-DX-AB3A-01A-11R-A41I-07 RP11-745O10.4~ATP5G2 fusion "TMBIM4,RP11-745O10.4,TMBIM4," "ATP5G2," chr12~chr12 66563635 54034897 12 -- 2.094729 11 7 4 11 84 TCGA-DX-AB3A-01A-11R-A41I-07 RP11-745O10.4~ATP5G2 fusion "TMBIM4,RP11-745O10.4,TMBIM4," "ATP5G2," chr12~chr12 66563635 54036648 8 -- 1.667462 7 0 7 7 30 TCGA-DX-AB3A-01A-11R-A41I-07 RP11-745O10.4~Nchr12~54020361 intergenic "TMBIM4,RP11-745O10.4,TMBIM4," "-," chr12~chr12 66563635 54020361 12 -- 1.935601 12 7 5 12 50 TCGA-DX-AB3A-01A-11R-A41I-07 SLIT3~Nchr5~116912943 intergenic "SLIT3," "-," chr5~chr5 168620483 116912943 22 -+ 2.260383 19 17 2 19 26 TCGA-DX-AB3A-01A-11R-A41I-07 TANC2~Nchr7~49886024 intergenic "TANC2," "-," chr17~chr7 61345234 49886024 2 +- 0.693147 2 2 0 2 6 TCGA-DX-AB3A-01A-11R-A41I-07 TLK2~BZRAP1 fusion "TLK2," "BZRAP1," chr17~chr17 60663587 56385302 37 +- 2.678458 37 25 12 37 44 TCGA-DX-AB3A-01A-11R-A41I-07 TMEM159~NDUFAB1 fusion "TMEM159," "NDUFAB1," chr16~chr16 21172599 23598640 6 +- 1.791759 6 0 6 6 28 TCGA-DX-AB3A-01A-11R-A41I-07 TSPAN31~RAP1B fusion "TSPAN31,CDK4," "RAP1B," chr12~chr12 58142322 69042479 3 -+ 1.098612 3 2 1 3 12 TCGA-DX-AB3A-01A-11R-A41I-07 WIPF1~Nchr2~185052101 intergenic "WIPF1," "-," chr2~chr2 175547502 185052101 21 -- 2.623522 16 4 12 16 110 TCGA-DX-AB3A-01A-11R-A41I-07 WIPF1~Nchr5~174475534 intergenic "WIPF1," "-," chr2~chr5 175547502 174475534 7 -+ 1.747868 7 4 3 7 14 TCGA-DX-AB3A-01A-11R-A41I-07 WIPF1~Nchr5~174538738 intergenic "WIPF1," "-," chr2~chr5 175547502 174538738 25 -+ 2.654251 24 6 18 24 50 TCGA-DX-AB3A-01A-11R-A41I-07 ZCCHC11~NFIA fusion "ZCCHC11," "NFIA," chr1~chr1 53018603 61824819 4 -+ 1.386294 4 2 2 4 4 TCGA-DX-AB3A-01A-11R-A41I-07 ZNF420~Nchr5~111803444 intergenic "ZNF420," "-," chr19~chr5 37582023 111803444 2 ++ 0.693147 2 2 0 2 6 TCGA-DX-AB3A-01A-11R-A41I-07 ZNF420~Nchr5~111807731 intergenic "ZNF420," "-," chr19~chr5 37582023 111807731 3 ++ 1.098612 3 2 1 3 4 TCGA-DX-AB3A-01A-11R-A41I-07 ZNF420~Nchr5~111816018 intergenic "ZNF420," "-," chr19~chr5 37582023 111816018 3 ++ 1.098612 3 1 2 3 4 TCGA-DX-A8BO-01A-11R-A41I-07 CAMSAP1L1~Nchr18~64093052 intergenic "CAMSAP1L1," "-," chr1~chr18 200784772 64093052 3 ++ 1.098612 2 1 1 2 2 TCGA-DX-A8BO-01A-11R-A41I-07 CAMSAP1L1~Nchr18~64142428 intergenic "CAMSAP1L1," "-," chr1~chr18 200784772 64142428 6 ++ 1.56071 3 3 0 3 4 TCGA-DX-A8BO-01A-11R-A41I-07 DPYD~Nchr18~69517454 intergenic "DPYD," "-," chr1~chr18 98348820 69517454 9 -+ 1.273028 9 6 3 9 52 TCGA-DX-A8BO-01A-11R-A41I-07 DPYD~Nchr18~69517457 intergenic "DPYD," "-," chr1~chr18 98348820 69517457 4 -+ 1.039721 4 1 3 4 14 TCGA-DX-A8BO-01A-11R-A41I-07 DPYD~Nchr18~69579239 intergenic "DPYD," "-," chr1~chr18 98348820 69579239 6 -+ 1.56071 6 1 5 6 10 TCGA-DX-A8BO-01A-11R-A41I-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 178 -- 2.198726 177 177 0 177 78 TCGA-DX-A8BO-01A-11R-A41I-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 50 -+ 2.438698 25 0 25 25 36 TCGA-DX-A8BO-01A-11R-A41I-07 Nchr11~90280063~Nchr11~90578048 intergenic "-," "-," chr11~chr11 90280063 90578048 5 ++ 1.332179 5 3 2 5 10 TCGA-DX-A8BO-01A-11R-A41I-07 Nchr12~102709268~Nchr12~103083884 intergenic "-," "-," chr12~chr12 102709268 103083884 2 ++ 0.693147 2 0 2 2 8 TCGA-DX-A8BO-01A-11R-A41I-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 54 -+ 3.087091 51 32 18 51 102 TCGA-RN-AAAQ-01A-21R-A39D-07 COL8A1~C3orf26 fusion "COL8A1," "C3orf26," chr3~chr3 99513226 99865817 2 ++ 0.693147 2 2 0 2 2 TCGA-RN-AAAQ-01A-21R-A39D-07 CUX1~Nchr7~100292444 intergenic "CUX1," "-," chr7~chr7 101801888 100292444 3 ++ 1.098612 3 2 1 3 4 TCGA-RN-AAAQ-01A-21R-A39D-07 CUX1~Nchr7~100293644 intergenic "CUX1," "-," chr7~chr7 101801888 100293644 16 ++ 2.479956 16 11 5 16 188 TCGA-RN-AAAQ-01A-21R-A39D-07 CUX1~POP7 fusion "CUX1," "POP7," chr7~chr7 101801888 100304444 44 ++ 2.577024 42 17 25 42 168 TCGA-RN-AAAQ-01A-21R-A39D-07 CUX1~POP7 fusion "CUX1," "POP7," chr7~chr7 101758553 100304444 2 ++ 0.693147 1 0 1 1 76 TCGA-RN-AAAQ-01A-21R-A39D-07 EML1~GPI fusion "EML1," "GPI," chr14~chr19 100259880 34884153 8 ++ 1.667462 8 2 6 8 16 TCGA-RN-AAAQ-01A-21R-A39D-07 EML1~GPI fusion "EML1," "GPI," chr14~chr19 100259880 34884633 4 ++ 1.386294 4 2 2 4 14 TCGA-RN-AAAQ-01A-21R-A39D-07 EML1~GPI fusion "EML1," "GPI," chr14~chr19 100259880 34884819 2 ++ 0.693147 2 1 1 2 4 TCGA-RN-AAAQ-01A-21R-A39D-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31236835 31322301 2 -- 0.693147 2 0 2 2 136 TCGA-RN-AAAQ-01A-21R-A39D-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31237270 31322303 8 -- 2.079442 3 0 3 3 54 TCGA-RN-AAAQ-01A-21R-A39D-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31237743 31322471 4 -- 1.039721 2 1 1 2 6 TCGA-RN-AAAQ-01A-21R-A39D-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 61 -- 2.062245 60 59 1 60 38 TCGA-RN-AAAQ-01A-21R-A39D-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238905 31324034 3 -- 1.098612 3 3 0 3 10 TCGA-RN-AAAQ-01A-21R-A39D-07 LARP4B~Nchr2~54466421 intergenic "LARP4B," "-," chr10~chr2 909683 54466421 8 -- 1.906155 6 2 4 6 28 TCGA-RN-AAAQ-01A-21R-A39D-07 NFE2L3~POU6F2 fusion "NFE2L3," "POU6F2," chr7~chr7 26217742 39379241 5 ++ 1.332179 5 2 3 5 6 TCGA-RN-AAAQ-01A-21R-A39D-07 NFE2L3~POU6F2 fusion "NFE2L3," "POU6F2," chr7~chr7 26217742 39472676 4 ++ 1.039721 4 1 3 4 8 TCGA-RN-AAAQ-01A-21R-A39D-07 NR1D2~Nchr3~20599850 intergenic "NR1D2," "-," chr3~chr3 24009514 20599850 4 ++ 1.386294 4 3 1 4 14 TCGA-RN-AAAQ-01A-21R-A39D-07 Nchr10~22514550~Nchr10~22514645 intergenic "-," "-," chr10~chr10 22514550 22514645 3 -- 0.636514 3 0 3 3 2 TCGA-RN-AAAQ-01A-21R-A39D-07 Nchr11~101011919~UBAP2 intergenic "-," "UBAP2," chr11~chr9 101011919 33927078 6 -- 1.242453 5 1 4 5 20 TCGA-RN-AAAQ-01A-21R-A39D-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 84 -+ 2.569379 35 0 35 35 14 TCGA-RN-AAAQ-01A-21R-A39D-07 Nchr14~28685915~Nchr14~20295599 intergenic "-," "-," chr14~chr14 28685915 20295599 5 ++ 1.332179 4 3 1 4 4 TCGA-RN-AAAQ-01A-21R-A39D-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 22 -+ 2.689178 22 10 12 22 142 TCGA-RN-AAAQ-01A-21R-A39D-07 Nchr2~122702023~Nchr2~122964639 intergenic "-," "-," chr2~chr2 122702023 122964639 5 ++ 1.609438 4 3 1 4 16 TCGA-RN-AAAQ-01A-21R-A39D-07 Nchr2~122702023~Nchr2~122998576 intergenic "-," "-," chr2~chr2 122702023 122998576 2 ++ 0.693147 2 1 1 2 2 TCGA-RN-AAAQ-01A-21R-A39D-07 Nchr3~115889773~LSAMP intergenic "-," "LSAMP," chr3~chr3 115889773 116163729 3 ++ 0.636514 3 0 3 3 2 TCGA-RN-AAAQ-01A-21R-A39D-07 Nchr6~82767656~RP11-379B8.1 intergenic "-," "RP11-379B8.1," chr6~chr6 82767656 82555626 4 -- 1.386294 4 3 1 4 8 TCGA-RN-AAAQ-01A-21R-A39D-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 2 ++ 0.693147 2 2 0 2 14 TCGA-RN-AAAQ-01A-21R-A39D-07 SFXN5~Nchr2~67075118 intergenic "SFXN5," "-," chr2~chr2 73215387 67075118 8 -+ 2.079442 7 7 0 7 20 TCGA-RN-AAAQ-01A-21R-A39D-07 UBN2~Nchr7~155053802 intergenic "UBN2," "-," chr7~chr7 138921843 155053802 196 ++ 3.167459 187 57 130 187 394 TCGA-RN-AAAQ-01A-21R-A39D-07 UBN2~Nchr7~155056564 intergenic "UBN2," "-," chr7~chr7 138921843 155056564 5 ++ 1.609438 5 0 5 5 2 TCGA-RN-AAAQ-01A-21R-A39D-07 USP34~Nchr2~67955662 intergenic "USP34," "-," chr2~chr2 61621988 67955662 14 -+ 2.341994 14 7 7 14 32 TCGA-RN-AAAQ-01A-21R-A39D-07 WDR43~Nchr7~57995176 intergenic "WDR43," "-," chr2~chr7 29152576 57995176 5 +- 1.332179 5 1 4 5 6 TCGA-RN-AAAQ-01A-21R-A39D-07 ZNF498~Nchr7~138142621 intergenic "ZNF498," "-," chr7~chr7 99221803 138142621 59 ++ 2.883122 59 28 31 59 140 TCGA-DX-AB2H-01A-11R-A39D-07 AC012506.1~AC016768.1 fusion "AC012506.1," "AC016768.1," chr2~chr2 23554441 23313874 7 -- 1.94591 6 5 1 6 12 TCGA-DX-AB2H-01A-11R-A39D-07 AC104654.2~Nchr2~41646181 intergenic "AC104654.2," "-," chr2~chr2 42160416 41646181 12 -- 1.820076 10 2 8 10 22 TCGA-DX-AB2H-01A-11R-A39D-07 ADSS~CAPRIN2 fusion "ADSS," "CAPRIN2," chr1~chr12 244579283 30864563 54 -- 2.66125 35 31 4 35 64 TCGA-DX-AB2H-01A-11R-A39D-07 AMIGO2~Nchr12~39314625 intergenic "AMIGO2," "-," chr12~chr12 47472363 39314625 5 -- 1.609438 5 2 3 5 8 TCGA-DX-AB2H-01A-11R-A39D-07 ARHGEF25~CPNE8 fusion "ARHGEF25," "CPNE8," chr12~chr12 58007543 39047872 2 +- 0.693147 2 1 1 2 84 TCGA-DX-AB2H-01A-11R-A39D-07 ARHGEF25~CPNE8 fusion "ARHGEF25," "CPNE8," chr12~chr12 58008183 39047872 136 +- 3.089149 137 73 61 137 280 TCGA-DX-AB2H-01A-11R-A39D-07 B3GALNT2~LBR fusion "B3GALNT2," "LBR," chr1~chr1 235634164 225611791 5 -- 1.332179 4 0 4 4 18 TCGA-DX-AB2H-01A-11R-A39D-07 B3GALNT2~LBR fusion "B3GALNT2," "LBR," chr1~chr1 235643370 225611791 3 -- 0.636514 3 1 2 3 8 TCGA-DX-AB2H-01A-11R-A39D-07 B4GALNT1~TSFM fusion "B4GALNT1," "TSFM," chr12~chr12 58025698 58186769 110 -+ 2.812395 104 24 77 104 372 TCGA-DX-AB2H-01A-11R-A39D-07 B4GALNT1~TSFM fusion "B4GALNT1," "TSFM," chr12~chr12 58025698 58189960 27 -+ 2.672912 25 18 7 25 128 TCGA-DX-AB2H-01A-11R-A39D-07 BEST3~Nchr12~66167018 intergenic "BEST3," "-," chr12~chr12 70065208 66167018 2 -+ 0.693147 2 1 1 2 8 TCGA-DX-AB2H-01A-11R-A39D-07 C12orf28~KCNMB4 fusion "C12orf28," "KCNMB4," chr12~chr12 70321528 70824265 7 ++ 1.94591 6 3 3 6 14 TCGA-DX-AB2H-01A-11R-A39D-07 CAPRIN2~Nchr1~249218716 intergenic "CAPRIN2," "-," chr12~chr1 30864500 249218716 4 -- 1.386294 1 1 0 1 2 TCGA-DX-AB2H-01A-11R-A39D-07 CAPRIN2~Nchr1~249219678 intergenic "CAPRIN2," "-," chr12~chr1 30864500 249219678 3 -- 1.098612 2 2 0 2 2 TCGA-DX-AB2H-01A-11R-A39D-07 CAPRIN2~Nchr1~249220324 intergenic "CAPRIN2," "-," chr12~chr1 30864500 249220324 37 -- 2.85755 19 16 0 19 14 TCGA-DX-AB2H-01A-11R-A39D-07 CNOT2~C12orf28 fusion "CNOT2," "C12orf28," chr12~chr12 70713144 70266890 15 ++ 2.430791 14 9 5 14 22 TCGA-DX-AB2H-01A-11R-A39D-07 CPNE8~Nchr1~72036637 intergenic "CPNE8," "-," chr12~chr1 39299239 72036637 5 -+ 1.609438 4 3 1 4 10 TCGA-DX-AB2H-01A-11R-A39D-07 CPSF6~C9orf3 fusion "CPSF6," "C9orf3," chr12~chr9 69656342 97848964 2 ++ 0.693147 2 1 1 2 2 TCGA-DX-AB2H-01A-11R-A39D-07 HMGA2~OSBPL8 fusion "HMGA2," "OSBPL8," chr12~chr12 66357152 76881398 49 +- 2.837539 37 31 6 37 58 TCGA-DX-AB2H-01A-11R-A39D-07 HMGA2~OSBPL8 fusion "HMGA2," "OSBPL8," chr12~chr12 66357163 76881398 3 +- 0.636514 3 3 0 3 64 TCGA-DX-AB2H-01A-11R-A39D-07 KCNMB4~MUC19 fusion "KCNMB4," "MUC19," chr12~chr12 70794116 40887749 15 ++ 2.176186 14 11 3 14 30 TCGA-DX-AB2H-01A-11R-A39D-07 KCNMB4~Nchr1~234021576 intergenic "KCNMB4," "-," chr12~chr1 70760850 234021576 7 +- 1.549826 3 3 0 3 18 TCGA-DX-AB2H-01A-11R-A39D-07 MBD5~Nchr2~153934854 intergenic "MBD5,MBD5," "-," chr2~chr2 148779253 153934854 9 ++ 1.889159 3 2 1 3 8 TCGA-DX-AB2H-01A-11R-A39D-07 MDM2~Nchr12~58511400 intergenic "MDM2," "-," chr12~chr12 69214154 58511400 12 +- 2.022809 12 10 2 12 22 TCGA-DX-AB2H-01A-11R-A39D-07 MDM2~Nchr12~58512500 intergenic "MDM2," "-," chr12~chr12 69214154 58512500 458 +- 3.013114 442 342 100 442 1596 TCGA-DX-AB2H-01A-11R-A39D-07 MDM2~Nchr12~58513473 intergenic "MDM2," "-," chr12~chr12 69214154 58513473 17 +- 2.3947 17 10 7 17 1166 TCGA-DX-AB2H-01A-11R-A39D-07 MDM2~RP11-611E13.2 fusion "MDM2," "RP11-611E13.2," chr12~chr12 69233581 70298199 13 +- 2.138397 13 4 9 13 16 TCGA-DX-AB2H-01A-11R-A39D-07 MSRB3~CNOT2 fusion "MSRB3," "CNOT2," chr12~chr12 65672645 70726547 99 ++ 3.166724 95 36 59 95 2832 TCGA-DX-AB2H-01A-11R-A39D-07 MSRB3~CNOT2 fusion "MSRB3," "CNOT2," chr12~chr12 65672851 70729218 9 ++ 2.197225 9 2 7 9 50 TCGA-DX-AB2H-01A-11R-A39D-07 MSRB3~CNOT2 fusion "MSRB3," "CNOT2," chr12~chr12 65672829 70729218 5 ++ 1.05492 4 2 2 4 40 TCGA-DX-AB2H-01A-11R-A39D-07 MSRB3~CNOT2 fusion "MSRB3," "CNOT2," chr12~chr12 65672645 70729218 730 ++ 3.154277 696 337 359 696 2542 TCGA-DX-AB2H-01A-11R-A39D-07 MSRB3~CNOT2 fusion "MSRB3," "CNOT2," chr12~chr12 65672645 70731169 16 ++ 2.166085 16 12 4 16 520 TCGA-DX-AB2H-01A-11R-A39D-07 MUC19~Nchr12~68755903 intergenic "MUC19," "-," chr12~chr12 40851218 68755903 9 -- 1.676988 7 0 7 7 8 TCGA-DX-AB2H-01A-11R-A39D-07 MUC19~Nchr12~70549257 intergenic "MUC19," "-," chr12~chr12 40906023 70549257 116 ++ 2.900234 113 71 42 113 290 TCGA-DX-AB2H-01A-11R-A39D-07 NELL2~Nchr7~115024057 intergenic "NELL2," "-," chr12~chr7 45209769 115024057 3 -+ 1.098612 3 2 1 3 8 TCGA-DX-AB2H-01A-11R-A39D-07 NELL2~Nchr7~115057819 intergenic "NELL2," "-," chr12~chr7 45209769 115057819 4 -+ 1.039721 4 1 3 4 8 TCGA-DX-AB2H-01A-11R-A39D-07 NELL2~Nchr7~115064759 intergenic "NELL2," "-," chr12~chr7 45209769 115064759 6 -+ 1.56071 3 2 1 3 4 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr10~77352466~C10orf11 intergenic "-," "C10orf11," chr10~chr10 77352466 77795766 2 ++ 0.693147 2 2 0 2 8 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 37 -+ 2.422715 21 0 21 21 20 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr12~39643204~CPNE8 intergenic "-," "CPNE8," chr12~chr12 39643204 39120194 18 ++ 2.659323 10 10 0 10 16 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr12~42959697~Nchr2~196069758 intergenic "-," "-," chr12~chr2 42959697 196069758 7 +- 1.747868 5 5 0 5 8 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr12~46864045~MSRB3 intergenic "-," "MSRB3," chr12~chr12 46864045 65860914 8 +- 1.494175 6 1 5 6 4 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr12~46888055~DLG2 intergenic "-," "DLG2," chr12~chr11 46888055 83962334 57 -- 2.89212 27 3 24 27 14 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr12~46888055~Nchr1~71570122 intergenic "-," "-," chr12~chr1 46888055 71570122 65 -- 3.025377 63 34 29 63 186 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr12~46888055~Nchr1~71571581 intergenic "-," "-," chr12~chr1 46888055 71571581 18 -- 2.50529 17 12 5 17 234 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr12~65672145~CNOT2 intergenic "-," "CNOT2," chr12~chr12 65672145 70729218 2 ++ 0.693147 1 1 0 1 4 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr12~65673297~CNOT2 intergenic "-," "CNOT2," chr12~chr12 65673297 70726547 14 ++ 1.72982 14 1 13 14 44 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr12~65673297~CNOT2 intergenic "-," "CNOT2," chr12~chr12 65673297 70729218 15 ++ 2.303488 13 1 12 13 44 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr12~69801054~RAPGEF3 intergenic "-," "RAPGEF3," chr12~chr12 69801054 48145752 9 +- 2.197225 4 3 1 4 32 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr12~70032794~Nchr12~68755903 intergenic "-," "-," chr12~chr12 70032794 68755903 7 +- 1.747868 6 5 1 6 8 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr12~74616486~THAP2 intergenic "-," "THAP2," chr12~chr12 74616486 72066197 12 -- 2.138333 11 3 8 11 24 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr16~65605674~Nchr16~65397711 intergenic "-," "-," chr16~chr16 65605674 65397711 16 -- 2.187322 15 10 5 15 44 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr18~37115422~Nchr18~36788753 intergenic "-," "-," chr18~chr18 37115422 36788753 2 -- 0.693147 1 0 1 1 6 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 21 -+ 2.334549 18 10 8 18 214 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr1~147775662~RP11-495P10.6 intergenic "-," "RP11-495P10.6," chr1~chr1 147775662 147745213 2 +- 0.693147 2 2 0 2 4 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr1~234021427~TLR5 intergenic "-," "TLR5," chr1~chr1 234021427 223283866 3 -+ 1.098612 3 3 0 3 6 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr1~247496262~ARHGAP9 intergenic "-," "ARHGAP9," chr1~chr12 247496262 57873207 6 +- 1.56071 6 2 4 6 4 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr1~247496548~ARHGAP9 intergenic "-," "ARHGAP9," chr1~chr12 247496548 57873207 4 +- 1.039721 4 2 2 4 22 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr1~247496548~ARHGAP9 intergenic "-," "ARHGAP9," chr1~chr12 247496548 57873571 8 +- 1.906155 6 4 2 6 32 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr1~247496548~ARHGAP9 intergenic "-," "ARHGAP9," chr1~chr12 247496548 57874617 3 +- 0.636514 3 2 1 3 38 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr1~247496689~ARHGAP9 intergenic "-," "ARHGAP9," chr1~chr12 247496689 57873207 4 +- 1.039721 4 1 3 4 24 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr1~247496689~ARHGAP9 intergenic "-," "ARHGAP9," chr1~chr12 247496689 57873571 5 +- 1.609438 5 3 2 5 30 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr1~247497728~ARHGAP9 intergenic "-," "ARHGAP9," chr1~chr12 247497728 57873207 6 +- 1.94591 6 4 1 6 24 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr1~247497728~ARHGAP9 intergenic "-," "ARHGAP9," chr1~chr12 247497728 57873571 14 +- 2.338372 14 10 3 14 50 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr1~247497728~ARHGAP9 intergenic "-," "ARHGAP9," chr1~chr12 247497728 57874617 5 +- 1.332179 4 3 1 4 58 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr1~247503531~ARHGAP9 intergenic "-," "ARHGAP9," chr1~chr12 247503531 57873207 2 +- 0.693147 1 0 1 1 8 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr1~71557387~MSRB3 intergenic "-," "MSRB3," chr1~chr12 71557387 65860914 3 +- 1.098612 2 0 2 2 4 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr21~17652183~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17652183 17859810 2 ++ 0.693147 1 0 1 1 6 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr2~41646068~Nchr2~41393695 intergenic "-," "-," chr2~chr2 41646068 41393695 7 -- 1.277034 1 0 1 1 12 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr6~1389254~AL033381.1 intergenic "-," "AL033381.1," chr6~chr6 1389254 1101761 5 -- 1.332179 5 4 1 5 8 TCGA-DX-AB2H-01A-11R-A39D-07 Nchr9~14531945~NFIB intergenic "-," "NFIB," chr9~chr9 14531945 14307519 4 -- 1.039721 4 4 0 4 18 TCGA-DX-AB2H-01A-11R-A39D-07 OS9~Nchr12~66177047 intergenic "OS9," "-," chr12~chr12 58090156 66177047 35 +- 2.822205 35 16 19 35 120 TCGA-DX-AB2H-01A-11R-A39D-07 OSBPL8~CNOT2 fusion "OSBPL8," "CNOT2," chr12~chr12 76881290 70704675 8 -+ 1.667462 8 8 0 8 14 TCGA-DX-AB2H-01A-11R-A39D-07 OSBPL8~RP11-81H14.2 fusion "OSBPL8," "RP11-81H14.2," chr12~chr12 76881290 68845332 26 -- 2.704781 11 10 1 11 28 TCGA-DX-AB2H-01A-11R-A39D-07 OTOGL~Nchr17~52144183 intergenic "OTOGL," "-," chr12~chr17 80699475 52144183 2 +- 0.693147 2 0 2 2 2 TCGA-DX-AB2H-01A-11R-A39D-07 POLE4~Nchr2~75503636 intergenic "POLE4," "-," chr2~chr2 75187273 75503636 4 ++ 1.386294 4 3 1 4 10 TCGA-DX-AB2H-01A-11R-A39D-07 PPM1D~Nchr12~68884076 intergenic "PPM1D," "-," chr17~chr12 58734202 68884076 4 ++ 1.386294 4 2 2 4 14 TCGA-DX-AB2H-01A-11R-A39D-07 PRPF40A~Nchr2~165242509 intergenic "PRPF40A," "-," chr2~chr2 153525651 165242509 2 -+ 0.693147 2 1 1 2 14 TCGA-DX-AB2H-01A-11R-A39D-07 R3HDM2~KIF21A fusion "R3HDM2," "KIF21A," chr12~chr12 57789532 39701531 11 -- 2.271869 11 10 1 11 28 TCGA-DX-AB2H-01A-11R-A39D-07 R3HDM2~KIF21A fusion "R3HDM2," "KIF21A," chr12~chr12 57789532 39703568 6 -- 0.867563 6 6 0 6 34 TCGA-DX-AB2H-01A-11R-A39D-07 R3HDM2~KIF21A fusion "R3HDM2," "KIF21A," chr12~chr12 57789532 39705355 82 -- 2.914816 75 49 26 75 60 TCGA-DX-AB2H-01A-11R-A39D-07 R3HDM2~KIF21A fusion "R3HDM2," "KIF21A," chr12~chr12 57824503 39705355 3 -- 0.636514 3 3 0 3 18 TCGA-DX-AB2H-01A-11R-A39D-07 RECQL5~Nchr17~71993544 intergenic "RECQL5," "-," chr17~chr17 73654378 71993544 6 -+ 1.56071 6 1 5 6 26 TCGA-DX-AB2H-01A-11R-A39D-07 RP11-611E13.2~Nchr12~70015882 intergenic "RP11-611E13.2," "-," chr12~chr12 70636604 70015882 4 -+ 1.386294 4 2 2 4 18 TCGA-DX-AB2H-01A-11R-A39D-07 RP11-611E13.2~Nchr12~70015882 intergenic "RP11-611E13.2," "-," chr12~chr12 70636577 70015882 4 -+ 1.039721 4 2 2 4 20 TCGA-DX-AB2H-01A-11R-A39D-07 RP11-81H14.2~C12orf28 fusion "RP11-81H14.2," "C12orf28," chr12~chr12 68835844 70272808 4 -+ 1.039721 3 1 2 3 16 TCGA-DX-AB2H-01A-11R-A39D-07 RP11-81H14.2~C12orf28 fusion "RP11-81H14.2," "C12orf28," chr12~chr12 68845147 70272808 3 -+ 1.098612 3 1 2 3 2 TCGA-DX-AB2H-01A-11R-A39D-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 24 ++ 2.787876 22 14 8 22 66 TCGA-DX-AB2H-01A-11R-A39D-07 RPL19~TFDP2 fusion "RPL19," "TFDP2," chr17~chr3 37360790 141762608 2 +- 0.693147 2 2 0 2 2 TCGA-DX-AB2H-01A-11R-A39D-07 SCAF11~Nchr12~39643126 intergenic "SCAF11," "-," chr12~chr12 46325289 39643126 38 -+ 2.901308 12 3 9 12 26 TCGA-DX-AB2H-01A-11R-A39D-07 SCAF11~Nchr12~47009725 intergenic "SCAF11," "-," chr12~chr12 46384136 47009725 5 -- 1.332179 5 5 0 5 2 TCGA-DX-AB2H-01A-11R-A39D-07 SCAF11~Nchr12~70099784 intergenic "SCAF11," "-," chr12~chr12 46384136 70099784 24 -- 2.592787 21 11 10 21 22 TCGA-DX-AB2H-01A-11R-A39D-07 SCYL3~TSPAN8 fusion "SCYL3," "TSPAN8," chr1~chr12 169857817 71551567 8 -- 1.732868 7 5 2 7 22 TCGA-DX-AB2H-01A-11R-A39D-07 SCYL3~TSPAN8 fusion "SCYL3," "TSPAN8," chr1~chr12 169857791 71551567 4 -- 1.386294 3 1 2 3 22 TCGA-DX-AB2H-01A-11R-A39D-07 SDK2~TMTC2 fusion "SDK2," "TMTC2," chr17~chr12 71375316 83250789 11 -+ 1.84622 11 7 4 11 36 TCGA-DX-AB2H-01A-11R-A39D-07 SDK2~TMTC2 fusion "SDK2," "TMTC2," chr17~chr12 71380015 83250789 2 -+ 0.693147 2 0 2 2 4 TCGA-DX-AB2H-01A-11R-A39D-07 SLC38A2~RP11-611E13.2 fusion "SLC38A2," "RP11-611E13.2," chr12~chr12 46764559 70636673 7 -- 1.747868 7 2 5 7 20 TCGA-DX-AB2H-01A-11R-A39D-07 TBC1D15~Nchr12~72121942 intergenic "TBC1D15," "-," chr12~chr12 72291721 72121942 5 +- 1.332179 2 1 1 2 2 TCGA-DX-AB2H-01A-11R-A39D-07 TBC1D15~Nchr12~72123841 intergenic "TBC1D15," "-," chr12~chr12 72291721 72123841 4 +- 1.039721 4 1 3 4 12 TCGA-DX-AB2H-01A-11R-A39D-07 THAP2~Nchr12~69791470 intergenic "THAP2,THAP2," "-," chr12~chr12 72058360 69791470 2 ++ 0.693147 2 2 0 2 2 TCGA-DX-AB2H-01A-11R-A39D-07 THAP2~Nchr12~69800940 intergenic "THAP2,THAP2," "-," chr12~chr12 72058360 69800940 10 ++ 2.163956 7 4 3 7 26 TCGA-DX-AB2H-01A-11R-A39D-07 THAP2~Nchr12~74617934 intergenic "THAP2,THAP2," "-," chr12~chr12 72058360 74617934 8 ++ 2.079442 6 2 4 6 2 TCGA-DX-AB2H-01A-11R-A39D-07 THAP2~RAPGEF3 fusion "THAP2,THAP2," "RAPGEF3," chr12~chr12 72058360 48145752 3 +- 1.098612 3 3 0 3 6 TCGA-DX-AB2H-01A-11R-A39D-07 THAP2~YEATS4 fusion "THAP2,THAP2," "YEATS4," chr12~chr12 72058360 69783927 291 ++ 2.977963 279 82 196 279 496 TCGA-DX-AB2H-01A-11R-A39D-07 TRHDE~SFSWAP fusion "TRHDE," "SFSWAP," chr12~chr12 72969322 132249001 4 ++ 1.039721 4 0 4 4 28 TCGA-DX-AB2H-01A-11R-A39D-07 TRHDE~SFSWAP fusion "TRHDE," "SFSWAP," chr12~chr12 72969322 132250663 2 ++ 0.693147 1 0 1 1 10 TCGA-DX-AB2H-01A-11R-A39D-07 TSPAN8~Nchr12~73376164 intergenic "TSPAN8," "-," chr12~chr12 71531733 73376164 3 -+ 1.098612 2 1 1 2 2 TCGA-DX-AB2H-01A-11R-A39D-07 WIF1~Nchr12~38706253 intergenic "WIF1," "-," chr12~chr12 65460421 38706253 4 -+ 1.386294 4 3 1 4 10 TCGA-DX-AB2H-01A-11R-A39D-07 ZFC3H1~CDK4 fusion "ZFC3H1," "CDK4," chr12~chr12 72054069 58145519 3 -- 1.098612 3 1 2 3 10 TCGA-DX-AB2H-01A-11R-A39D-07 ZNF496~WIF1 fusion "ZNF496," "WIF1," chr1~chr12 247491985 65471634 4 -- 1.386294 4 4 0 4 14 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273516 94029544 7 -+ 1.549826 7 7 0 7 70 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267424 94034161 2 -+ 0.693147 2 1 1 2 202 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273675 94034985 2 -+ 0.693147 2 1 1 2 72 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266740 94035596 4 -+ 1.039721 3 3 0 3 88 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273675 94037648 2 -+ 0.693147 2 2 0 2 82 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48268178 94038634 3 -+ 0.636514 2 2 0 2 178 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271710 94038912 2 -+ 0.693147 2 1 1 2 124 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271304 94039035 4 -+ 0.950271 2 0 1 2 48 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48276641 94039038 3 -+ 1.098612 3 0 3 3 12 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273978 94039554 26 -+ 0.58928 25 25 0 25 36 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272949 94039560 3 -+ 1.098612 2 0 2 2 40 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266326 94039751 2 -+ 0.693147 2 1 1 2 240 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272972 94041951 2 -+ 0.693147 2 0 2 2 66 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267688 94042395 2 -+ 0.693147 1 0 1 1 88 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94042395 12 -+ 2.253858 10 10 0 10 530 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48269193 94043012 2 -+ 0.693147 2 1 1 2 204 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273871 94043012 8 -+ 0.37677 6 6 0 6 38 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267904 94043038 4 -+ 1.386294 1 0 1 1 164 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48275805 94043541 2 -+ 0.693147 2 2 0 2 16 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266746 94043553 4 -+ 1.039721 2 1 1 2 584 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272593 94047036 2 -+ 0.693147 1 0 1 1 70 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272593 94047811 11 -+ 0.600166 10 9 1 10 332 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273284 94047811 2 -+ 0.693147 2 2 0 2 88 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273675 94047856 12 -+ 1.979205 7 5 2 7 332 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48265992 94049543 2 -+ 0.693147 2 1 1 2 448 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94049703 4 -+ 1.039721 3 1 2 3 860 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48270358 94049718 12 -+ 1.118743 10 9 1 10 528 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48270158 94050321 36 -+ 0.626474 2 1 1 2 118 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264376 94050330 14 -+ 2.143952 7 7 0 7 1152 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267040 94052269 5 -+ 1.332179 3 2 1 3 326 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266755 94052369 5 -+ 1.332179 2 1 1 2 362 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48270036 94053721 2 -+ 0.693147 1 0 1 1 156 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266335 94053721 2 -+ 0.693147 2 2 0 2 484 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48265899 94054429 2 -+ 0.693147 2 0 2 2 142 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94054429 22 -+ 0.485105 21 20 1 21 326 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273284 94054429 2 -+ 0.693147 1 0 1 1 138 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266264 94054922 2 -+ 0.693147 2 0 2 2 510 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48265891 94055310 6 -+ 0.867563 5 0 5 5 144 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271304 94055762 8 -+ 1.073543 5 5 0 5 60 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272410 94055769 2 -+ 0.693147 2 1 1 2 42 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266546 94055790 4 -+ 1.039721 4 1 3 4 228 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48263678 94058500 3 -+ 1.098612 2 2 0 2 156 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271778 94058563 3 -+ 1.098612 3 1 2 3 8 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267711 94058563 2 -+ 0.693147 2 1 1 2 10 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48263319 94058563 3 -+ 1.098612 3 1 2 3 368 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48271934 189850446 2 -+ 0.693147 2 1 1 2 24 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48274371 189855730 2 -+ 0.693147 2 0 2 2 20 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48269149 189858087 7 -+ 0.59827 7 7 0 7 52 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48273284 189858087 3 -+ 1.098612 3 2 1 3 42 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48270158 189858960 676 -+ 0.729953 267 267 0 267 86 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48271934 189858960 4 -+ 0.562335 2 1 1 2 56 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48269862 189859015 3 -+ 0.636514 2 0 2 2 172 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266738 189859032 38 -+ 0.825777 32 31 1 32 126 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48273978 189859267 2 -+ 0.693147 1 0 1 1 20 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48262149 189859450 1 -+ 0.693147 2 0 1 2 12 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272815 189861185 2 -+ 0.693147 1 1 0 1 32 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268836 189862999 4 -+ 1.039721 4 3 1 4 46 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268744 189864196 9 -+ 2.043192 7 4 3 7 148 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265891 189864196 4 -+ 1.039721 4 3 1 4 126 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265891 189866123 5 -+ 1.332179 3 1 2 3 154 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48273701 189867034 3 -+ 1.098612 1 0 1 1 58 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48267688 189868137 4 -+ 1.039721 3 0 3 3 28 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48273978 189871071 2 -+ 0.693147 2 2 0 2 22 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268178 189871071 4 -+ 1.386294 3 1 2 3 68 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266103 189871071 3 -+ 1.098612 1 0 1 1 80 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48263292 189875464 4 -+ 1.386294 1 0 1 1 68 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL5A1 fusion "COL1A1," "COL5A1," chr17~chr9 48273533 137706689 3 -+ 1.098612 1 1 0 1 2 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL5A1 fusion "COL1A1," "COL5A1," chr17~chr9 48265237 137716539 4 -+ 1.039721 4 4 0 4 12 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL6A1 fusion "COL1A1," "COL6A1," chr17~chr21 48264104 47422145 2 -+ 0.693147 2 1 1 2 6 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL6A2 fusion "COL1A1," "COL6A2," chr17~chr21 48266103 47533970 3 -+ 1.098612 2 2 0 2 8 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~COL6A2 fusion "COL1A1," "COL6A2," chr17~chr21 48272410 47535820 2 -+ 0.693147 2 2 0 2 14 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~SPARC fusion "COL1A1," "SPARC," chr17~chr5 48263292 151042609 2 -- 0.693147 2 2 0 2 8 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A1~SPARC fusion "COL1A1," "SPARC," chr17~chr5 48266555 151052777 2 -- 0.693147 2 1 1 2 24 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94057197 48263868 3 +- 1.098612 1 0 1 1 160 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94038732 48264898 2 +- 0.693147 2 2 0 2 50 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94052404 48266352 3 +- 1.098612 2 1 1 2 210 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94045815 48266371 16 +- 1.721402 16 2 14 16 116 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94041994 48266371 2 +- 0.693147 1 0 1 1 32 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94038920 48266636 2 +- 0.693147 2 2 0 2 94 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94037692 48266636 4 +- 1.039721 3 2 1 3 34 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48266636 19 +- 2.506662 15 8 7 15 278 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94038679 48266844 2 +- 0.693147 2 1 1 2 122 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047856 48268266 2 +- 0.693147 1 1 0 1 234 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047864 48269385 2 +- 0.693147 2 1 1 2 122 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94054519 48269861 3 +- 1.098612 2 1 1 2 354 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94056607 48270054 11 +- 1.84622 4 2 2 4 288 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94055169 48270211 9 +- 1.889159 8 1 7 8 1794 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94038920 48270408 8 +- 1.494175 4 4 0 4 114 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94037692 48271402 6 +- 1.791759 4 3 1 4 158 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049960 48272839 2 +- 0.693147 2 2 0 2 234 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94035615 48273026 4 +- 1.386294 3 1 2 3 50 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48273560 10 +- 1.748067 7 3 4 7 866 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94041994 48273889 3 +- 1.098612 2 0 2 2 108 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94056373 48273889 5 +- 1.609438 3 3 0 3 554 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94034564 48274424 2 +- 0.693147 1 0 1 1 54 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94047143 189856213 2 ++ 0.693147 2 2 0 2 14 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94035615 189858087 3 ++ 0.636514 3 1 2 3 10 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94053755 189859267 2 ++ 0.693147 1 0 1 1 24 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94047143 189859772 2 ++ 0.693147 1 0 1 1 22 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94043587 189859772 3 ++ 0.636514 1 1 0 1 12 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94049756 189864196 9 ++ 1.581094 7 2 5 7 170 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94045815 189864568 4 ++ 0.562335 4 1 3 4 26 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94047050 189867030 8 ++ 1.082196 3 0 3 3 42 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94055161 189867034 2 ++ 0.693147 1 1 0 1 80 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94055169 189868137 3 ++ 1.098612 1 1 0 1 34 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94049756 189868460 6 ++ 1.242453 5 2 3 5 20 TCGA-QQ-A8VD-01A-42R-A39D-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94052341 189872254 2 ++ 0.693147 2 0 2 2 46 TCGA-QQ-A8VD-01A-42R-A39D-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189875616 48263009 7 +- 1.747868 3 1 2 3 64 TCGA-QQ-A8VD-01A-42R-A39D-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189866315 48265317 3 +- 1.098612 1 0 1 1 82 TCGA-QQ-A8VD-01A-42R-A39D-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189864303 48265317 9 +- 2.043192 6 0 6 6 56 TCGA-QQ-A8VD-01A-42R-A39D-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870985 48265317 8 +- 1.667462 5 0 5 5 82 TCGA-QQ-A8VD-01A-42R-A39D-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870985 48265998 8 +- 1.732868 7 0 7 7 102 TCGA-QQ-A8VD-01A-42R-A39D-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189874953 48266608 2 +- 0.693147 2 1 1 2 22 TCGA-QQ-A8VD-01A-42R-A39D-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189869090 48267957 10 +- 0.897946 10 1 9 10 248 TCGA-QQ-A8VD-01A-42R-A39D-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189871708 48269183 5 +- 1.05492 4 0 4 4 764 TCGA-QQ-A8VD-01A-42R-A39D-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189868505 48269210 4 +- 1.386294 2 2 0 2 264 TCGA-QQ-A8VD-01A-42R-A39D-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189857666 48273026 6 +- 1.329661 4 3 1 4 50 TCGA-QQ-A8VD-01A-42R-A39D-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189856448 48273560 4 +- 1.386294 3 1 2 3 14 TCGA-QQ-A8VD-01A-42R-A39D-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189860492 94024342 2 ++ 0.693147 1 0 1 1 14 TCGA-QQ-A8VD-01A-42R-A39D-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189867788 94038082 2 ++ 0.693147 1 1 0 1 20 TCGA-QQ-A8VD-01A-42R-A39D-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189869090 94038634 9 ++ 0.348832 9 8 1 9 18 TCGA-QQ-A8VD-01A-42R-A39D-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189859058 94042395 2 ++ 0.693147 2 2 0 2 16 TCGA-QQ-A8VD-01A-42R-A39D-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189868190 94049853 8 ++ 1.559581 7 5 2 7 74 TCGA-QQ-A8VD-01A-42R-A39D-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189863045 94050321 3 ++ 1.098612 3 3 0 3 14 TCGA-QQ-A8VD-01A-42R-A39D-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189858185 94055125 10 ++ 1.609438 7 4 3 7 12 TCGA-QQ-A8VD-01A-42R-A39D-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189859032 94056339 3 ++ 1.098612 2 1 1 2 18 TCGA-QQ-A8VD-01A-42R-A39D-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189876443 94059649 3 ++ 1.098612 3 2 1 3 26 TCGA-QQ-A8VD-01A-42R-A39D-07 COL3A1~SPARC fusion "COL3A1," "SPARC," chr2~chr5 189868771 151046070 2 +- 0.693147 1 1 0 1 6 TCGA-QQ-A8VD-01A-42R-A39D-07 COL5A2~COL1A2 fusion "COL5A2," "COL1A2," chr2~chr7 189907877 94050321 4 -+ 1.386294 2 0 2 2 2 TCGA-QQ-A8VD-01A-42R-A39D-07 COL6A1~COL1A1 fusion "COL6A1," "COL1A1," chr21~chr17 47417676 48268760 3 +- 1.098612 3 2 1 3 6 TCGA-QQ-A8VD-01A-42R-A39D-07 COL6A1~COL3A1 fusion "COL6A1," "COL3A1," chr21~chr2 47417668 189872852 3 ++ 1.098612 3 2 1 3 6 TCGA-QQ-A8VD-01A-42R-A39D-07 CTNND1~Nchr11~57363888 intergenic "CTNND1," "-," chr11~chr11 57529518 57363888 4 ++ 1.039721 4 2 2 4 2 TCGA-QQ-A8VD-01A-42R-A39D-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 17 -- 1.565445 17 0 16 17 4 TCGA-QQ-A8VD-01A-42R-A39D-07 HN1~Nchr2~174296244 intergenic "HN1," "-," chr17~chr2 73143651 174296244 42 -- 1.017472 35 35 0 35 2 TCGA-QQ-A8VD-01A-42R-A39D-07 MMP11~Nchr22~24126508 intergenic "MMP11," "-," chr22~chr22 24126343 24126508 2 -- 0.693147 2 0 2 2 8 TCGA-QQ-A8VD-01A-42R-A39D-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 6 ++ 1.791759 5 0 5 5 8 TCGA-QQ-A8VD-01A-42R-A39D-07 Nchr7~94019364~COL3A1 intergenic "-," "COL3A1," chr7~chr2 94019364 189856910 2 -+ 0.693147 2 1 1 2 18 TCGA-QQ-A8VD-01A-42R-A39D-07 SPARC~COL1A1 fusion "SPARC," "COL1A1," chr5~chr17 151051221 48270393 3 -- 1.098612 2 0 2 2 20 TCGA-QQ-A8VD-01A-42R-A39D-07 SPARC~COL1A1 fusion "SPARC," "COL1A1," chr5~chr17 151047080 48271402 4 -- 1.386294 4 3 1 4 26 TCGA-QQ-A8VD-01A-42R-A39D-07 SPARC~COL1A1 fusion "SPARC," "COL1A1," chr5~chr17 151051221 48277210 2 -- 0.693147 2 0 2 2 2 TCGA-QQ-A8VD-01A-42R-A39D-07 SPARC~COL1A2 fusion "SPARC," "COL1A2," chr5~chr7 151046008 94056600 3 -+ 1.098612 2 2 0 2 8 TCGA-3B-A9HY-01A-11R-A39D-07 C15orf57~CBX3 fusion "C15orf57," "CBX3," chr15~chr7 40854971 26241389 3 -+ 1.098612 3 2 1 3 14 TCGA-3B-A9HY-01A-11R-A39D-07 DAB1~Nchr1~58436537 intergenic "DAB1," "-," chr1~chr1 58715912 58436537 4 -- 1.386294 3 0 3 3 2 TCGA-3B-A9HY-01A-11R-A39D-07 IGFBP5~AC012668.2 fusion "IGFBP5," "AC012668.2," chr2~chr2 217559162 216577963 2 -+ 0.693147 2 1 1 2 2 TCGA-3B-A9HY-01A-11R-A39D-07 MYH11~TPM2 fusion "MYH11," "TPM2," chr16~chr9 15808888 35685672 3 -- 0.636514 3 2 1 3 12 TCGA-3B-A9HY-01A-11R-A39D-07 MYH11~TPM2 fusion "MYH11," "TPM2," chr16~chr9 15809042 35689742 2 -- 0.693147 2 1 1 2 8 TCGA-3B-A9HY-01A-11R-A39D-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 16 -+ 2.220025 10 0 10 10 6 TCGA-3B-A9HY-01A-11R-A39D-07 Nchr14~58448631~SLC35F4 intergenic "-," "SLC35F4," chr14~chr14 58448631 58060842 4 -- 1.039721 4 1 3 4 12 TCGA-3B-A9HY-01A-11R-A39D-07 Nchr15~21911290~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21911290 20876597 4 -- 1.039721 4 1 3 4 8 TCGA-3B-A9HY-01A-11R-A39D-07 Nchr15~21916043~Nchr15~20876597 intergenic "-," "-," chr15~chr15 21916043 20876597 45 -- 2.681095 40 7 33 40 72 TCGA-3B-A9HY-01A-11R-A39D-07 Nchr17~16343551~Nchr17~16344712 intergenic "-," "-," chr17~chr17 16343551 16344712 3 -+ 0.636514 1 1 0 1 8 TCGA-3B-A9HY-01A-11R-A39D-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 13 -+ 1.818483 12 7 5 12 86 TCGA-3B-A9HY-01A-11R-A39D-07 Nchr1~173431463~TNFSF4 intergenic "-," "TNFSF4," chr1~chr1 173431463 173157708 4 -- 1.386294 3 1 2 3 12 TCGA-3B-A9HY-01A-11R-A39D-07 Nchr2~177065788~Nchr2~177065931 intergenic "-," "-," chr2~chr2 177065788 177065931 4 -- 1.039721 4 0 4 4 10 TCGA-3B-A9HY-01A-11R-A39D-07 Nchr3~187872040~LPP intergenic "-," "LPP," chr3~chr3 187872040 188123900 4 ++ 1.039721 4 0 4 4 2 TCGA-3B-A9HY-01A-11R-A39D-07 Nchr5~148803807~Nchr5~148805991 intergenic "-," "-," chr5~chr5 148803807 148805991 4 +- 0.562335 4 2 2 4 22 TCGA-3B-A9HY-01A-11R-A39D-07 Nchr5~148803960~Nchr5~148805991 intergenic "-," "-," chr5~chr5 148803960 148805991 13 +- 2.204785 13 10 3 13 44 TCGA-3B-A9HY-01A-11R-A39D-07 Nchr5~155108550~SGCD intergenic "-," "SGCD," chr5~chr5 155108550 155550866 5 ++ 1.609438 4 3 1 4 14 TCGA-3B-A9HY-01A-11R-A39D-07 Nchr8~128691459~Nchr8~128433208 intergenic "-," "-," chr8~chr8 128691459 128433208 3 -- 1.098612 3 2 1 3 24 TCGA-3B-A9HY-01A-11R-A39D-07 NchrX~124318557~ODZ1 intergenic "-," "ODZ1," chrX~chrX 124318557 124097666 3 -- 0.636514 3 2 1 3 18 TCGA-3B-A9HY-01A-11R-A39D-07 NchrX~124319492~ODZ1 intergenic "-," "ODZ1," chrX~chrX 124319492 124097666 5 -- 1.332179 4 3 1 4 14 TCGA-3B-A9HY-01A-11R-A39D-07 NchrX~81017243~NchrX~80794909 intergenic "-," "-," chrX~chrX 81017243 80794909 4 -- 1.039721 4 2 2 4 4 TCGA-3B-A9HY-01A-11R-A39D-07 RP11-123G5.1~Nchr4~127385457 intergenic "RP11-123G5.1," "-," chr4~chr4 127876447 127385457 3 -- 1.098612 1 1 0 1 8 TCGA-3B-A9HY-01A-11R-A39D-07 RP11-123O10.4~GRIP1 fusion "RP11-123O10.4," "GRIP1," chr12~chr12 67462830 66990707 7 -- 1.94591 2 0 2 2 16 TCGA-3B-A9HY-01A-11R-A39D-07 SORBS1~FAM135B fusion "SORBS1," "FAM135B," chr10~chr8 97106163 139255311 95 -- 2.98943 91 40 51 91 190 TCGA-3B-A9HY-01A-11R-A39D-07 SORBS1~FAM135B fusion "SORBS1," "FAM135B," chr10~chr8 97110966 139256296 9 -- 1.676988 9 4 5 9 6 TCGA-3B-A9HY-01A-11R-A39D-07 TPM2~ACTG1 fusion "TPM2," "ACTG1," chr9~chr17 35685061 79478652 4 -- 1.386294 4 2 2 4 10 TCGA-3B-A9HY-01A-11R-A39D-07 TPM2~MYH11 fusion "TPM2," "NDE1,MYH11," chr9~chr16 35689701 15818566 2 -- 0.693147 2 0 2 2 2 TCGA-DX-AB2G-01A-11R-A39D-07 ACSS3~Nchr12~59488501 intergenic "ACSS3," "-," chr12~chr12 81610775 59488501 8 +- 1.906155 6 5 1 6 4 TCGA-DX-AB2G-01A-11R-A39D-07 ATF1~Nchr12~53537231 intergenic "ATF1," "-," chr12~chr12 51158090 53537231 4 ++ 1.039721 4 0 4 4 12 TCGA-DX-AB2G-01A-11R-A39D-07 ATF1~Nchr12~92055792 intergenic "ATF1," "-," chr12~chr12 51158090 92055792 26 ++ 2.514981 24 7 17 24 20 TCGA-DX-AB2G-01A-11R-A39D-07 ATF1~PTPRR fusion "ATF1," "PTPRR," chr12~chr12 51158090 71056385 39 +- 2.576591 20 18 2 20 20 TCGA-DX-AB2G-01A-11R-A39D-07 ATP2B1~GRIP1 fusion "ATP2B1," "GRIP1," chr12~chr12 89996820 66935730 2 -- 0.693147 1 1 0 1 4 TCGA-DX-AB2G-01A-11R-A39D-07 CCT2~Nchr12~58655839 intergenic "CCT2," "-," chr12~chr12 69987393 58655839 2 +- 0.693147 2 1 1 2 10 TCGA-DX-AB2G-01A-11R-A39D-07 CDH18~TERT fusion "CDH18," "TERT," chr5~chr5 19612543 1282739 3 -- 1.098612 3 2 1 3 6 TCGA-DX-AB2G-01A-11R-A39D-07 CNOT2~Nchr12~57824993 intergenic "CNOT2," "-," chr12~chr12 70713144 57824993 22 +- 2.815205 22 2 20 22 362 TCGA-DX-AB2G-01A-11R-A39D-07 CNOT2~Nchr12~91134906 intergenic "CNOT2," "-," chr12~chr12 70713144 91134906 2 ++ 0.693147 2 1 1 2 54 TCGA-DX-AB2G-01A-11R-A39D-07 CNOT2~R3HDM2 fusion "CNOT2," "R3HDM2," chr12~chr12 70704797 57789601 7 +- 1.549826 6 0 6 6 158 TCGA-DX-AB2G-01A-11R-A39D-07 CNOT2~R3HDM2 fusion "CNOT2," "R3HDM2," chr12~chr12 70713102 57789601 11 +- 2.019815 4 0 4 4 196 TCGA-DX-AB2G-01A-11R-A39D-07 CNOT2~R3HDM2 fusion "CNOT2," "R3HDM2," chr12~chr12 70713144 57789601 203 +- 3.022193 75 9 66 75 324 TCGA-DX-AB2G-01A-11R-A39D-07 CPSF6~Nchr6~104616913 intergenic "CPSF6," "-," chr12~chr6 69653977 104616913 14 ++ 2.069202 13 0 13 13 20 TCGA-DX-AB2G-01A-11R-A39D-07 CPSF6~Nchr6~104623558 intergenic "CPSF6," "-," chr12~chr6 69653977 104623558 5 ++ 1.332179 5 0 5 5 16 TCGA-DX-AB2G-01A-11R-A39D-07 DIP2B~R3HDM2 fusion "DIP2B," "R3HDM2," chr12~chr12 51054102 57693261 5 +- 1.609438 4 2 2 4 8 TCGA-DX-AB2G-01A-11R-A39D-07 EPB41L2~CTA-212D2.2 fusion "EPB41L2," "CTA-212D2.2," chr6~chr6 131186676 135381353 9 -+ 2.043192 9 3 6 9 14 TCGA-DX-AB2G-01A-11R-A39D-07 FRS2~Nchr12~69791470 intergenic "FRS2," "-," chr12~chr12 69924740 69791470 3 ++ 1.098612 3 3 0 3 2 TCGA-DX-AB2G-01A-11R-A39D-07 FRS2~Nchr12~69791473 intergenic "FRS2," "-," chr12~chr12 69924740 69791473 2 ++ 0.693147 2 1 1 2 2 TCGA-DX-AB2G-01A-11R-A39D-07 FRS2~Nchr12~69800940 intergenic "FRS2," "-," chr12~chr12 69924740 69800940 15 ++ 2.268605 10 9 1 10 20 TCGA-DX-AB2G-01A-11R-A39D-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32489682 32549615 136 -- 2.09755 137 1 135 137 84 TCGA-DX-AB2G-01A-11R-A39D-07 HMGA2~Nchr12~46888160 intergenic "HMGA2," "-," chr12~chr12 66232349 46888160 4 +- 1.386294 3 1 2 3 6 TCGA-DX-AB2G-01A-11R-A39D-07 HMGA2~Nchr12~46909806 intergenic "HMGA2," "-," chr12~chr12 66232349 46909806 9 +- 1.889159 7 6 1 7 16 TCGA-DX-AB2G-01A-11R-A39D-07 HMGA2~Nchr12~46914459 intergenic "HMGA2," "-," chr12~chr12 66232349 46914459 2 +- 0.693147 1 0 1 1 6 TCGA-DX-AB2G-01A-11R-A39D-07 HMGA2~Nchr12~66156926 intergenic "HMGA2," "-," chr12~chr12 66232349 66156926 37 ++ 2.744209 34 16 18 34 242 TCGA-DX-AB2G-01A-11R-A39D-07 HMGA2~Nchr12~66159257 intergenic "HMGA2," "-," chr12~chr12 66232349 66159257 4 ++ 1.386294 4 2 2 4 1102 TCGA-DX-AB2G-01A-11R-A39D-07 HMGA2~Nchr12~66162254 intergenic "HMGA2," "-," chr12~chr12 66232349 66162254 10 ++ 2.271869 11 8 2 11 1604 TCGA-DX-AB2G-01A-11R-A39D-07 HMGA2~Nchr12~66167018 intergenic "HMGA2," "-," chr12~chr12 66232349 66167018 551 ++ 3.079739 541 410 118 541 1996 TCGA-DX-AB2G-01A-11R-A39D-07 HMGA2~Nchr12~68855984 intergenic "HMGA2," "-," chr12~chr12 66218968 68855984 3 -- 1.098612 3 1 2 3 54 TCGA-DX-AB2G-01A-11R-A39D-07 HMGA2~PCBP2 fusion "HMGA2," "PCBP2,RP11-793H13.8,PCBP2," chr12~chr12 66232349 53856277 22 ++ 2.902002 22 18 4 22 124 TCGA-DX-AB2G-01A-11R-A39D-07 HMGA2~SLC35E3 fusion "HMGA2," "SLC35E3," chr12~chr12 66232349 69152937 8 ++ 2.079442 7 3 4 7 12 TCGA-DX-AB2G-01A-11R-A39D-07 LRP1~ATF1 fusion "LRP1," "ATF1," chr12~chr12 57539273 51189692 2 ++ 0.693147 2 2 0 2 24 TCGA-DX-AB2G-01A-11R-A39D-07 LRP1~MCRS1 fusion "LRP1," "MCRS1," chr12~chr12 57604263 49953604 15 +- 2.338372 15 9 6 15 766 TCGA-DX-AB2G-01A-11R-A39D-07 LRP1~MCRS1 fusion "LRP1," "MCRS1," chr12~chr12 57604662 49953604 2548 +- 3.369614 2477 2082 392 2477 7008 TCGA-DX-AB2G-01A-11R-A39D-07 LRP1~Nchr12~69409219 intergenic "LRP1," "-," chr12~chr12 57539273 69409219 7 ++ 1.747868 7 0 7 7 36 TCGA-DX-AB2G-01A-11R-A39D-07 LRP1~Nchr12~77265671 intergenic "LRP1," "-," chr12~chr12 57604662 77265671 165 +- 3.238062 112 87 25 112 248 TCGA-DX-AB2G-01A-11R-A39D-07 LRP1~Nchr12~77268009 intergenic "LRP1," "-," chr12~chr12 57604662 77268009 15 +- 1.986732 15 8 7 15 18 TCGA-DX-AB2G-01A-11R-A39D-07 MDM2~DIP2B fusion "MDM2," "DIP2B," chr12~chr12 69207408 51053977 6 ++ 1.242453 5 2 3 5 6 TCGA-DX-AB2G-01A-11R-A39D-07 MDM2~Nchr12~58423025 intergenic "MDM2," "-," chr12~chr12 69218431 58423025 3 ++ 1.098612 3 2 1 3 4 TCGA-DX-AB2G-01A-11R-A39D-07 MDM2~Nchr12~58423364 intergenic "MDM2," "-," chr12~chr12 69218431 58423364 4 ++ 1.039721 4 0 4 4 60 TCGA-DX-AB2G-01A-11R-A39D-07 MDM2~Nchr12~58423430 intergenic "MDM2," "-," chr12~chr12 69218431 58423430 3 ++ 1.098612 3 2 1 3 56 TCGA-DX-AB2G-01A-11R-A39D-07 MDM2~Nchr12~58431411 intergenic "MDM2," "-," chr12~chr12 69218431 58431411 11 ++ 1.972247 9 1 8 9 26 TCGA-DX-AB2G-01A-11R-A39D-07 MDM2~Nchr12~58438091 intergenic "MDM2," "-," chr12~chr12 69218431 58438091 9 ++ 1.889159 8 4 4 8 44 TCGA-DX-AB2G-01A-11R-A39D-07 NTN4~LETMD1 fusion "NTN4," "LETMD1," chr12~chr12 96180717 51450133 6 -+ 1.56071 6 3 3 6 8 TCGA-DX-AB2G-01A-11R-A39D-07 NUP107~Nchr12~63656494 intergenic "NUP107," "-," chr12~chr12 69096564 63656494 118 +- 3.252039 116 41 75 116 412 TCGA-DX-AB2G-01A-11R-A39D-07 NUP107~Nchr12~63656956 intergenic "NUP107," "-," chr12~chr12 69096564 63656956 79 +- 2.992209 77 54 23 77 492 TCGA-DX-AB2G-01A-11R-A39D-07 Nchr10~77352466~C10orf11 intergenic "-," "C10orf11," chr10~chr10 77352466 77795766 2 ++ 0.693147 2 0 2 2 2 TCGA-DX-AB2G-01A-11R-A39D-07 Nchr10~77530612~C10orf11 intergenic "-," "C10orf11," chr10~chr10 77530612 77795766 2 ++ 0.693147 2 1 1 2 8 TCGA-DX-AB2G-01A-11R-A39D-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 45 -+ 2.532118 18 0 18 18 52 TCGA-DX-AB2G-01A-11R-A39D-07 Nchr12~67870464~Nchr12~58068435 intergenic "-," "-," chr12~chr12 67870464 58068435 23 -+ 2.41221 23 8 15 23 18 TCGA-DX-AB2G-01A-11R-A39D-07 Nchr12~67903171~Nchr12~58068435 intergenic "-," "-," chr12~chr12 67903171 58068435 5 -+ 1.609438 5 2 3 5 8 TCGA-DX-AB2G-01A-11R-A39D-07 Nchr12~69801054~RP11-54A9.1 intergenic "-," "RP11-54A9.1," chr12~chr12 69801054 76663643 4 +- 1.039721 1 0 1 1 6 TCGA-DX-AB2G-01A-11R-A39D-07 Nchr12~69817907~RP11-54A9.1 intergenic "-," "RP11-54A9.1," chr12~chr12 69817907 76663643 3 +- 1.098612 3 3 0 3 4 TCGA-DX-AB2G-01A-11R-A39D-07 Nchr12~70846164~Nchr12~68855984 intergenic "-," "-," chr12~chr12 70846164 68855984 9 -- 1.889159 3 3 0 3 22 TCGA-DX-AB2G-01A-11R-A39D-07 Nchr12~70856766~RP11-81H14.2 intergenic "-," "RP11-81H14.2," chr12~chr12 70856766 68845332 7 -- 1.94591 4 2 2 4 10 TCGA-DX-AB2G-01A-11R-A39D-07 Nchr12~77265600~MCRS1 intergenic "-," "MCRS1," chr12~chr12 77265600 49953604 54 -- 2.907152 40 39 1 40 52 TCGA-DX-AB2G-01A-11R-A39D-07 Nchr12~92087962~KRT80 intergenic "-," "KRT80," chr12~chr12 92087962 52581304 3 ++ 1.098612 2 2 0 2 122 TCGA-DX-AB2G-01A-11R-A39D-07 Nchr12~92087962~Nchr12~52617230 intergenic "-," "-," chr12~chr12 92087962 52617230 38 ++ 2.666828 36 25 11 36 162 TCGA-DX-AB2G-01A-11R-A39D-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 47 -+ 2.827427 45 28 16 45 174 TCGA-DX-AB2G-01A-11R-A39D-07 Nchr9~92470507~RP5-1050E16.2 intergenic "-," "RP5-1050E16.2," chr9~chr9 92470507 92522698 2 ++ 0.693147 2 0 2 2 12 TCGA-DX-AB2G-01A-11R-A39D-07 OS9~FRS2 fusion "OS9,OS9," "FRS2," chr12~chr12 58088106 69924645 4 ++ 1.386294 4 4 0 4 8 TCGA-DX-AB2G-01A-11R-A39D-07 OS9~Nchr12~77087150 intergenic "OS9," "-," chr12~chr12 58090156 77087150 7 +- 1.549826 7 6 1 7 12 TCGA-DX-AB2G-01A-11R-A39D-07 OS9~SYT1 fusion "OS9," "SYT1," chr12~chr12 58090156 79624758 21 ++ 2.400563 20 13 7 20 30 TCGA-DX-AB2G-01A-11R-A39D-07 OS9~SYT1 fusion "OS9," "SYT1," chr12~chr12 58090156 79635611 6 ++ 1.791759 6 2 4 6 24 TCGA-DX-AB2G-01A-11R-A39D-07 OS9~YEATS4 fusion "OS9," "YEATS4," chr12~chr12 58090156 69764486 58 ++ 2.987374 57 19 38 57 168 TCGA-DX-AB2G-01A-11R-A39D-07 OTOGL~ACSS3 fusion "OTOGL," "ACSS3," chr12~chr12 80699475 81610680 14 ++ 2.304619 3 3 0 3 4 TCGA-DX-AB2G-01A-11R-A39D-07 PPFIA2~KCNMB4 fusion "PPFIA2," "KCNMB4," chr12~chr12 81732959 70824265 2 -+ 0.693147 2 1 1 2 24 TCGA-DX-AB2G-01A-11R-A39D-07 PPFIA2~KCNMB4 fusion "PPFIA2," "KCNMB4," chr12~chr12 81719556 70824265 47 -+ 2.792555 47 28 17 47 108 TCGA-DX-AB2G-01A-11R-A39D-07 PTPRR~Nchr12~53537231 intergenic "PTPRR," "-," chr12~chr12 71056275 53537231 42 -+ 2.722279 35 30 5 35 92 TCGA-DX-AB2G-01A-11R-A39D-07 R3HDM2~Nchr12~91134906 intergenic "R3HDM2," "-," chr12~chr12 57789532 91134906 74 -+ 2.579327 54 1 53 54 90 TCGA-DX-AB2G-01A-11R-A39D-07 R3HDM2~Nchr12~91217398 intergenic "R3HDM2," "-," chr12~chr12 57789532 91217398 7 -+ 1.549826 7 2 5 7 4 TCGA-DX-AB2G-01A-11R-A39D-07 R3HDM2~Nchr12~91245364 intergenic "R3HDM2," "-," chr12~chr12 57789532 91245364 6 -+ 1.791759 3 1 2 3 2 TCGA-DX-AB2G-01A-11R-A39D-07 R3HDM2~RP11-20L19.1 fusion "R3HDM2," "RP11-20L19.1," chr12~chr12 57789532 91204299 3 -+ 1.098612 3 0 3 3 4 TCGA-DX-AB2G-01A-11R-A39D-07 RP11-571M6.15~Nchr12~51315385 intergenic "METTL21B,RP11-571M6.15," "-," chr12~chr12 58166911 51315385 2 ++ 0.693147 2 2 0 2 4 TCGA-DX-AB2G-01A-11R-A39D-07 RPSAP52~HMGA2 fusion "RPSAP52," "HMGA2," chr12~chr12 66220623 66221781 7 -+ 1.277034 5 2 3 5 14 TCGA-DX-AB2G-01A-11R-A39D-07 RPSAP52~Nchr12~68855984 intergenic "RPSAP52," "-," chr12~chr12 66220623 68855984 7 -- 1.94591 6 1 5 6 210 TCGA-DX-AB2G-01A-11R-A39D-07 RPSAP52~Nchr12~70846255 intergenic "RPSAP52," "-," chr12~chr12 66220623 70846255 14 -- 1.908535 5 5 0 5 14 TCGA-DX-AB2G-01A-11R-A39D-07 RPSAP52~RP11-81H14.2 fusion "RPSAP52," "RP11-81H14.2," chr12~chr12 66220623 68835921 21 -- 2.227438 17 8 9 17 74 TCGA-DX-AB2G-01A-11R-A39D-07 RPSAP52~RP11-81H14.2 fusion "RPSAP52," "RP11-81H14.2," chr12~chr12 66220623 68845332 56 -- 2.722503 53 33 20 53 256 TCGA-DX-AB2G-01A-11R-A39D-07 SCN8A~Nchr6~157744999 intergenic "SCN8A," "-," chr12~chr6 52099407 157744999 4 ++ 1.386294 4 3 1 4 18 TCGA-DX-AB2G-01A-11R-A39D-07 SCN8A~Nchr6~157749270 intergenic "SCN8A," "-," chr12~chr6 52099407 157749270 9 ++ 2.197225 9 3 6 9 14 TCGA-DX-AB2G-01A-11R-A39D-07 SCN8A~PPFIA2 fusion "SCN8A," "PPFIA2," chr12~chr12 52145377 81851645 2 +- 0.693147 2 2 0 2 8 TCGA-DX-AB2G-01A-11R-A39D-07 SMUG1~RP11-834C11.8 fusion "SMUG1," "RP11-834C11.8," chr12~chr12 54576288 54558783 9 -+ 1.676988 9 4 5 9 8 TCGA-DX-AB2G-01A-11R-A39D-07 SP1~ATF7 fusion "SP1," "NPFF,ATF7," chr12~chr12 53777406 53901811 51 +- 2.922837 51 15 36 51 306 TCGA-DX-AB2G-01A-11R-A39D-07 SP1~NPFF fusion "SP1," "NPFF," chr12~chr12 53777406 53900926 90 +- 2.983804 89 57 32 89 152 TCGA-DX-AB2G-01A-11R-A39D-07 STAT6~PTPRQ fusion "STAT6," "PTPRQ," chr12~chr12 57498110 81007371 2 -+ 0.693147 2 2 0 2 18 TCGA-DX-AB2G-01A-11R-A39D-07 STAT6~PTPRQ fusion "STAT6," "PTPRQ," chr12~chr12 57498247 81007371 7 -+ 1.94591 7 5 2 7 18 TCGA-DX-AB2G-01A-11R-A39D-07 TRIO~CDH18 fusion "TRIO," "CDH18," chr5~chr5 14420130 19612710 5 +- 1.332179 5 2 3 5 24 TCGA-DX-AB2G-01A-11R-A39D-07 TSPAN31~Nchr6~143379278 intergenic "TSPAN31," "-," chr12~chr6 58140503 143379278 2 +- 0.693147 2 0 2 2 8 TCGA-DX-AB2G-01A-11R-A39D-07 YIPF4~TTC27 fusion "YIPF4," "TTC27," chr2~chr2 32526564 33007693 2 ++ 0.693147 2 1 1 2 4 TCGA-QC-AA9N-01A-11R-A39D-07 ANKMY2~Nchr21~18804480 intergenic "ANKMY2," "-," chr7~chr21 16664608 18804480 3 -+ 1.098612 3 1 2 3 12 TCGA-QC-AA9N-01A-11R-A39D-07 BACH1~Nchr21~41858682 intergenic "BACH1," "-," chr21~chr21 30702014 41858682 9 ++ 1.735126 9 5 4 9 18 TCGA-QC-AA9N-01A-11R-A39D-07 C1orf196~KAZN fusion "C1orf196," "KAZN," chr1~chr1 14507087 14925479 2 ++ 0.693147 1 1 0 1 22 TCGA-QC-AA9N-01A-11R-A39D-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 2 +- 0.693147 2 2 0 2 16 TCGA-QC-AA9N-01A-11R-A39D-07 EDF1~Nchr9~139760751 intergenic "EDF1," "-," chr9~chr9 139758307 139760751 3 +- 1.098612 3 2 1 3 16 TCGA-QC-AA9N-01A-11R-A39D-07 EIF1~Nchr17~21163258 intergenic "EIF1," "-," chr17~chr17 39847063 21163258 3 ++ 1.098612 3 0 3 3 6 TCGA-QC-AA9N-01A-11R-A39D-07 ENO1~Nchr1~236648076 intergenic "ENO1," "-," chr1~chr1 8921250 236648076 4 -- 1.386294 3 3 0 3 2 TCGA-QC-AA9N-01A-11R-A39D-07 FSTL1~RORA fusion "FSTL1," "RORA," chr3~chr15 120128379 60824050 6 -- 1.791759 5 2 3 5 8 TCGA-QC-AA9N-01A-11R-A39D-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 276 -- 2.519654 276 275 1 276 50 TCGA-QC-AA9N-01A-11R-A39D-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32487941 32548633 105 -- 2.1828 23 2 21 23 6 TCGA-QC-AA9N-01A-11R-A39D-07 MARCH8~NCAM2 fusion "RP11-358L16.2,MARCH8," "NCAM2," chr10~chr21 46089683 22696703 46 -+ 2.96206 44 28 16 44 82 TCGA-QC-AA9N-01A-11R-A39D-07 MBNL2~Nchr13~105185713 intergenic "MBNL2," "-," chr13~chr13 97928663 105185713 7 ++ 1.747868 5 5 0 5 6 TCGA-QC-AA9N-01A-11R-A39D-07 NCAM2~AP000688.14 fusion "NCAM2," "AP000688.14,CBR1," chr21~chr21 22746333 37442390 6 ++ 1.791759 6 3 3 6 6 TCGA-QC-AA9N-01A-11R-A39D-07 NCAM2~RORB fusion "NCAM2," "RORB," chr21~chr9 22370936 77245198 2 ++ 0.693147 2 1 1 2 4 TCGA-QC-AA9N-01A-11R-A39D-07 NOS1~BRAP fusion "NOS1," "BRAP," chr12~chr12 117796796 112121111 46 -- 2.818868 49 15 26 49 72 TCGA-QC-AA9N-01A-11R-A39D-07 NOS1~BRAP fusion "NOS1," "BRAP," chr12~chr12 117797889 112121111 7 -- 1.94591 6 2 4 6 22 TCGA-QC-AA9N-01A-11R-A39D-07 NRIP1~AF127936.7 fusion "NRIP1," "AF127936.7," chr21~chr21 16437066 16230029 5 -- 1.332179 5 5 0 5 8 TCGA-QC-AA9N-01A-11R-A39D-07 NRIP1~CSNK1G1 fusion "NRIP1," "CSNK1G1," chr21~chr15 16415816 64508912 17 -- 2.313154 16 14 2 16 30 TCGA-QC-AA9N-01A-11R-A39D-07 NRIP1~CSNK1G1 fusion "NRIP1," "CSNK1G1," chr21~chr15 16437066 64508912 2 -- 0.693147 2 1 1 2 6 TCGA-QC-AA9N-01A-11R-A39D-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 125 -+ 2.517703 37 0 37 37 52 TCGA-QC-AA9N-01A-11R-A39D-07 Nchr18~37115422~Nchr18~36788753 intergenic "-," "-," chr18~chr18 37115422 36788753 6 -- 1.56071 6 6 0 6 8 TCGA-QC-AA9N-01A-11R-A39D-07 Nchr19~24184567~Nchr19~36066721 intergenic "-," "-," chr19~chr19 24184567 36066721 4 -- 1.039721 1 1 0 1 22 TCGA-QC-AA9N-01A-11R-A39D-07 Nchr19~28967409~Nchr3~173609733 intergenic "-," "-," chr19~chr3 28967409 173609733 5 -+ 1.05492 5 5 0 5 10 TCGA-QC-AA9N-01A-11R-A39D-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 177 -+ 3.176658 168 104 59 168 290 TCGA-QC-AA9N-01A-11R-A39D-07 Nchr20~39633873~Nchr20~39430200 intergenic "-," "-," chr20~chr20 39633873 39430200 2 -- 0.693147 2 1 1 2 2 TCGA-QC-AA9N-01A-11R-A39D-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 2 ++ 0.693147 1 1 0 1 8 TCGA-QC-AA9N-01A-11R-A39D-07 Nchr21~17764005~Nchr21~21640184 intergenic "-," "-," chr21~chr21 17764005 21640184 20 ++ 2.441215 13 0 13 13 32 TCGA-QC-AA9N-01A-11R-A39D-07 Nchr3~23194507~Nchr3~22874428 intergenic "-," "-," chr3~chr3 23194507 22874428 4 -- 1.039721 4 1 3 4 2 TCGA-QC-AA9N-01A-11R-A39D-07 Nchr6~126965379~Nchr6~126965347 intergenic "-," "-," chr6~chr6 126965379 126965347 3 ++ 0.636514 2 2 0 2 2 TCGA-QC-AA9N-01A-11R-A39D-07 Nchr6~153603736~Nchr6~153603647 intergenic "-," "-," chr6~chr6 153603736 153603647 8 ++ 1.906155 8 7 1 8 8 TCGA-QC-AA9N-01A-11R-A39D-07 Nchr7~122851497~Nchr7~123096679 intergenic "-," "-," chr7~chr7 122851497 123096679 14 ++ 1.908535 13 0 13 13 78 TCGA-QC-AA9N-01A-11R-A39D-07 PDS5B~COL4A1 fusion "PDS5B," "COL4A1," chr13~chr13 33160730 110895081 79 +- 2.904102 76 1 75 76 84 TCGA-QC-AA9N-01A-11R-A39D-07 RAB40B~Nchr13~103046014 intergenic "RAB40B," "-," chr17~chr13 80656331 103046014 2 -+ 0.693147 2 1 1 2 4 TCGA-QC-AA9N-01A-11R-A39D-07 RAB40B~Nchr13~103046655 intergenic "RAB40B," "-," chr17~chr13 80656331 103046655 26 -+ 2.664532 26 14 12 26 90 TCGA-QC-AA9N-01A-11R-A39D-07 RAB40B~Nchr13~103122583 intergenic "RAB40B," "-," chr17~chr13 80656331 103122583 21 -+ 2.648438 21 12 9 21 46 TCGA-QC-AA9N-01A-11R-A39D-07 RIC8B~Nchr12~127550154 intergenic "RIC8B," "-," chr12~chr12 107177822 127550154 3 +- 1.098612 3 2 1 3 22 TCGA-QC-AA9N-01A-11R-A39D-07 RIC8B~Nchr12~127553321 intergenic "RIC8B," "-," chr12~chr12 107177822 127553321 14 +- 2.143952 13 7 6 13 60 TCGA-QC-AA9N-01A-11R-A39D-07 RNFT2~Nchr12~107161134 intergenic "RNFT2," "-," chr12~chr12 117204719 107161134 14 ++ 2.205598 13 6 7 13 44 TCGA-QC-AA9N-01A-11R-A39D-07 RORA~FSTL1 fusion "RORA," "FSTL1," chr15~chr3 60884586 120123818 22 -- 2.284167 20 8 12 20 68 TCGA-QC-AA9N-01A-11R-A39D-07 TIAM1~NCAM2 fusion "TIAM1," "NCAM2," chr21~chr21 32931240 22696703 5 -+ 1.05492 4 3 1 4 20 TCGA-QC-AA9N-01A-11R-A39D-07 TP53~EFCAB5 fusion "WRAP53,TP53," "EFCAB5," chr17~chr17 7590695 28295809 4 -+ 1.386294 4 1 3 4 36 TCGA-QC-AA9N-01A-11R-A39D-07 TP53~EFCAB5 fusion "WRAP53,TP53," "EFCAB5," chr17~chr17 7590695 28320183 4 -+ 1.039721 4 1 3 4 12 TCGA-QC-AA9N-01A-11R-A39D-07 ZNF224~RB1 fusion "ZNF224," "RB1," chr19~chr13 44605378 48907153 6 ++ 1.56071 6 3 3 6 20 TCGA-DX-AB2W-01A-11R-A39D-07 ABHD12~Nchr8~53793197 intergenic "ABHD12," "-," chr20~chr8 25282855 53793197 2 -- 0.693147 2 1 1 2 6 TCGA-DX-AB2W-01A-11R-A39D-07 FKBP1A~C20orf61 fusion "FKBP1A," "C20orf61," chr20~chr20 1373478 11791087 114 -- 2.928606 110 26 81 110 228 TCGA-DX-AB2W-01A-11R-A39D-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 198 -- 2.108032 198 198 0 198 46 TCGA-DX-AB2W-01A-11R-A39D-07 HLA-DRB5~HLA-DRB1 fusion "HLA-DRB5," "HLA-DRB1," chr6~chr6 32487941 32548633 84 -- 2.166992 18 5 13 18 22 TCGA-DX-AB2W-01A-11R-A39D-07 MINK1~Nchr17~10155946 intergenic "MINK1," "-," chr17~chr17 4784552 10155946 4 +- 1.386294 4 1 3 4 14 TCGA-DX-AB2W-01A-11R-A39D-07 MYO5A~GALK2 fusion "MYO5A," "GALK2," chr15~chr15 52820977 49574184 3 -+ 1.098612 3 2 1 3 14 TCGA-DX-AB2W-01A-11R-A39D-07 NIPBL~L3MBTL4 fusion "NIPBL," "L3MBTL4," chr5~chr18 36877280 6171941 5 +- 1.332179 5 2 3 5 4 TCGA-DX-AB2W-01A-11R-A39D-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 165 -+ 2.506925 58 0 57 58 76 TCGA-DX-AB2W-01A-11R-A39D-07 Nchr1~11448284~L3MBTL4 intergenic "-," "L3MBTL4," chr1~chr18 11448284 6171941 4 +- 1.386294 2 0 2 2 4 TCGA-DX-AB2W-01A-11R-A39D-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 38 -+ 2.837287 38 24 14 38 186 TCGA-DX-AB2W-01A-11R-A39D-07 Nchr2~177065915~Nchr2~177065788 intergenic "-," "-," chr2~chr2 177065915 177065788 2 ++ 0.693147 2 0 2 2 10 TCGA-DX-AB2W-01A-11R-A39D-07 RP1-34H18.1~RP11-781A6.1 fusion "RP1-34H18.1," "RP11-781A6.1," chr12~chr12 77966046 78177043 8 ++ 1.667462 7 4 3 7 22 TCGA-DX-AB2W-01A-11R-A39D-07 RPS9~Nchr19~50223193 intergenic "RPS9," "-," chr19~chr19 54705392 50223193 2 ++ 0.693147 2 1 1 2 164 TCGA-DX-A7ES-01A-31R-A39D-07 AC096579.7~Nchr14~106134679 intergenic "IGKC,AC096579.7," "-," chr2~chr14 89156855 106134679 2 +- 0.693147 2 2 0 2 44 TCGA-DX-A7ES-01A-31R-A39D-07 AC233264.3~AC096579.7 fusion "AC233264.3," "IGKC,AC096579.7," chr2~chr2 90007733 89157196 55 +- 2.377896 56 55 0 56 6598 TCGA-DX-A7ES-01A-31R-A39D-07 ARPC1B~Nchr7~98990292 intergenic "ARPC1B," "-," chr7~chr7 98988618 98990292 2 -+ 0.693147 2 2 0 2 2 TCGA-DX-A7ES-01A-31R-A39D-07 BTBD11~Nchr12~58284096 intergenic "BTBD11," "-," chr12~chr12 107861778 58284096 5 -+ 1.609438 5 3 2 5 10 TCGA-DX-A7ES-01A-31R-A39D-07 CAND1~IL22 fusion "CAND1," "IL22," chr12~chr12 67686556 68642656 155 +- 3.094231 152 84 67 152 230 TCGA-DX-A7ES-01A-31R-A39D-07 CPNE8~Nchr6~137512963 intergenic "CPNE8," "-," chr12~chr6 39299944 137512963 12 -+ 1.935601 12 7 5 12 18 TCGA-DX-A7ES-01A-31R-A39D-07 DOT1L~RP11-362K2.2 fusion "DOT1L," "RP11-362K2.2," chr19~chr12 2194576 59206196 149 ++ 3.398199 142 63 79 142 226 TCGA-DX-A7ES-01A-31R-A39D-07 ELK3~Nchr12~74367680 intergenic "RP11-394J1.2,ELK3," "-," chr12~chr12 96617551 74367680 5 ++ 1.609438 5 3 2 5 20 TCGA-DX-A7ES-01A-31R-A39D-07 ELK3~Nchr12~74385388 intergenic "RP11-394J1.2,ELK3," "-," chr12~chr12 96617551 74385388 4 ++ 1.039721 4 3 1 4 10 TCGA-DX-A7ES-01A-31R-A39D-07 ELK3~Nchr12~74405651 intergenic "RP11-394J1.2,ELK3," "-," chr12~chr12 96617551 74405651 15 ++ 2.523211 15 9 6 15 20 TCGA-DX-A7ES-01A-31R-A39D-07 ELK3~Nchr12~74551664 intergenic "RP11-394J1.2,ELK3," "-," chr12~chr12 96617551 74551664 62 +- 2.98849 33 11 22 33 114 TCGA-DX-A7ES-01A-31R-A39D-07 ELK3~Nchr12~74593853 intergenic "RP11-394J1.2,ELK3," "-," chr12~chr12 96617551 74593853 9 +- 1.676988 9 6 3 9 38 TCGA-DX-A7ES-01A-31R-A39D-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 466 -- 2.647634 466 466 0 466 160 TCGA-DX-A7ES-01A-31R-A39D-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 508 -- 2.514039 264 73 191 264 2 TCGA-DX-A7ES-01A-31R-A39D-07 HMGA2~Nchr12~60948609 intergenic "HMGA2," "-," chr12~chr12 66232349 60948609 6 +- 1.791759 6 3 3 6 14 TCGA-DX-A7ES-01A-31R-A39D-07 IGHA1~AC096579.7 fusion "IGHA1," "IGKC,AC096579.7," chr14~chr2 106173505 89156921 2 -- 0.693147 1 0 1 1 42 TCGA-DX-A7ES-01A-31R-A39D-07 IGHG1~IGHG3 fusion "IGHG1," "IGHG3," chr14~chr14 106208678 106236323 113 -- 1.730504 152 98 4 152 252 TCGA-DX-A7ES-01A-31R-A39D-07 IGHG4~IGHG1 fusion "IGHG4," "IGHG1," chr14~chr14 106091681 106208559 4 -- 1.039721 3 3 0 3 72 TCGA-DX-A7ES-01A-31R-A39D-07 IGHG4~IGLL5 fusion "IGHG4," "IGLL5,IGLC1," chr14~chr22 106091233 23237689 426 -+ 1.317678 417 410 0 417 6 TCGA-DX-A7ES-01A-31R-A39D-07 IGHJ5~IGHG2 fusion "IGHJ5," "IGHG2," chr14~chr14 106330024 106110286 3 -- 0.636514 1 1 0 1 6 TCGA-DX-A7ES-01A-31R-A39D-07 IGHJ5~IGHG2 fusion "IGHJ5," "IGHG2," chr14~chr14 106330024 106110440 14 -- 2.341994 8 8 0 8 8 TCGA-DX-A7ES-01A-31R-A39D-07 IGHV1-3~IGHG3 fusion "IGHV1-3," "IGHG3," chr14~chr14 106471636 106237742 8 -- 1.889159 8 6 1 8 60 TCGA-DX-A7ES-01A-31R-A39D-07 IGHV3-20~IGHG1 fusion "IGHV3-20," "IGHG1," chr14~chr14 106667988 106209407 14 -- 2.044931 7 4 3 7 16 TCGA-DX-A7ES-01A-31R-A39D-07 IGHV3-23~IGHA1 fusion "IGHV3-23," "IGHA1," chr14~chr14 106725609 106175001 11 -- 1.893788 11 3 8 11 38 TCGA-DX-A7ES-01A-31R-A39D-07 IGHV3-23~IGHG1 fusion "IGHV3-23," "IGHG1," chr14~chr14 106725609 106209407 16 -- 2.393312 13 6 7 13 60 TCGA-DX-A7ES-01A-31R-A39D-07 IGHV3-23~IGHV3-49 fusion "IGHV3-23," "IGHV3-49," chr14~chr14 106725609 107013248 414 -- 2.620615 280 279 1 280 468 TCGA-DX-A7ES-01A-31R-A39D-07 IGHV3-23~Nchr14~107236391 intergenic "IGHV3-23," "-," chr14~chr14 106725609 107236391 98 -- 2.078017 42 42 0 42 30 TCGA-DX-A7ES-01A-31R-A39D-07 IGHV3-73~IGHG1 fusion "IGHV3-73," "IGHG1," chr14~chr14 107211346 106209407 8 -- 1.732868 8 1 7 8 30 TCGA-DX-A7ES-01A-31R-A39D-07 IGHV3-9~IGHG3 fusion "IGHV3-9," "IGHG3," chr14~chr14 106552684 106237742 8 -- 1.889159 9 1 7 9 78 TCGA-DX-A7ES-01A-31R-A39D-07 IGHV4-39~IGHG1 fusion "IGHV4-39," "IGHG1," chr14~chr14 106878010 106209407 4 -- 1.386294 2 2 0 2 72 TCGA-DX-A7ES-01A-31R-A39D-07 IGKV1-16~AC096579.7 fusion "IGKV1-16," "IGKC,AC096579.7," chr2~chr2 89399773 89157196 123 -- 2.951721 107 96 9 107 946 TCGA-DX-A7ES-01A-31R-A39D-07 IGKV4-1~AC096579.7 fusion "IGKV4-1," "IGKC,AC096579.7," chr2~chr2 89185136 89157196 20 +- 2.532591 21 18 2 21 492 TCGA-DX-A7ES-01A-31R-A39D-07 IGLL5~Nchr22~23257852 intergenic "IGLL5,IGLC1," "-," chr22~chr22 23237566 23257852 121 -- 2.005375 5 0 4 5 14 TCGA-DX-A7ES-01A-31R-A39D-07 IGLV3-10~IGLV3-25 fusion "IGLV3-10," "IGLV3-25," chr22~chr22 23154324 23029445 35 ++ 2.093987 1 1 0 1 4 TCGA-DX-A7ES-01A-31R-A39D-07 LRIG3~Nchr12~107545769 intergenic "LRIG3," "-," chr12~chr12 59307763 107545769 22 -- 2.689178 22 11 11 22 144 TCGA-DX-A7ES-01A-31R-A39D-07 LRIG3~Nchr12~107549495 intergenic "LRIG3," "-," chr12~chr12 59307763 107549495 180 -- 3.052744 172 91 81 172 470 TCGA-DX-A7ES-01A-31R-A39D-07 LRIG3~Nchr12~58512500 intergenic "LRIG3," "-," chr12~chr12 59307763 58512500 48 -- 3.093226 47 30 17 47 142 TCGA-DX-A7ES-01A-31R-A39D-07 MDM2~Nchr12~107624484 intergenic "MDM2," "-," chr12~chr12 69230529 107624484 2 ++ 0.693147 2 0 2 2 192 TCGA-DX-A7ES-01A-31R-A39D-07 MDM2~Nchr12~107624491 intergenic "MDM2," "-," chr12~chr12 69230529 107624491 99 ++ 2.84023 91 32 59 91 190 TCGA-DX-A7ES-01A-31R-A39D-07 MDM2~Nchr12~107625221 intergenic "MDM2," "-," chr12~chr12 69230529 107625221 12 ++ 2.253858 12 4 8 12 66 TCGA-DX-A7ES-01A-31R-A39D-07 MDM2~Nchr12~107629626 intergenic "MDM2," "-," chr12~chr12 69230529 107629626 3 ++ 1.098612 3 0 3 3 2 TCGA-DX-A7ES-01A-31R-A39D-07 MTHFD1L~Nchr12~67814937 intergenic "MTHFD1L," "-," chr6~chr12 151259881 67814937 18 ++ 2.476221 17 13 4 17 58 TCGA-DX-A7ES-01A-31R-A39D-07 NR6A1~Nchr6~149062101 intergenic "NR6A1," "-," chr9~chr6 127306081 149062101 37 -+ 2.828345 36 23 12 36 136 TCGA-DX-A7ES-01A-31R-A39D-07 NR6A1~Nchr6~149062341 intergenic "NR6A1," "-," chr9~chr6 127306081 149062341 3 -+ 0.636514 3 2 1 3 8 TCGA-DX-A7ES-01A-31R-A39D-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 53 -+ 2.262055 17 0 17 17 14 TCGA-DX-A7ES-01A-31R-A39D-07 Nchr12~58284096~BTBD11 intergenic "-," "BTBD11," chr12~chr12 58284096 107861658 6 -+ 1.791759 5 4 1 5 22 TCGA-DX-A7ES-01A-31R-A39D-07 Nchr12~59513603~RP11-81H14.2 intergenic "-," "RP11-81H14.2," chr12~chr12 59513603 68845332 2 +- 0.693147 2 1 1 2 8 TCGA-DX-A7ES-01A-31R-A39D-07 Nchr12~74544782~Nchr12~61043137 intergenic "-," "-," chr12~chr12 74544782 61043137 6 -- 1.329661 4 4 0 4 44 TCGA-DX-A7ES-01A-31R-A39D-07 Nchr12~74544782~Nchr12~70464680 intergenic "-," "-," chr12~chr12 74544782 70464680 5 -+ 1.332179 4 4 0 4 68 TCGA-DX-A7ES-01A-31R-A39D-07 Nchr12~74544782~Nchr12~70464689 intergenic "-," "-," chr12~chr12 74544782 70464689 2 -+ 0.693147 1 1 0 1 68 TCGA-DX-A7ES-01A-31R-A39D-07 Nchr12~74544782~Nchr12~70475719 intergenic "-," "-," chr12~chr12 74544782 70475719 8 -+ 1.386294 7 4 3 7 38 TCGA-DX-A7ES-01A-31R-A39D-07 Nchr12~74544782~Nchr12~70478838 intergenic "-," "-," chr12~chr12 74544782 70478838 2 -+ 0.693147 2 0 2 2 30 TCGA-DX-A7ES-01A-31R-A39D-07 Nchr12~74551570~Nchr12~61043137 intergenic "-," "-," chr12~chr12 74551570 61043137 10 -- 2.163956 5 4 1 5 22 TCGA-DX-A7ES-01A-31R-A39D-07 Nchr12~74551570~Nchr12~70464680 intergenic "-," "-," chr12~chr12 74551570 70464680 7 -+ 1.747868 7 7 0 7 42 TCGA-DX-A7ES-01A-31R-A39D-07 Nchr12~74551570~Nchr12~70478838 intergenic "-," "-," chr12~chr12 74551570 70478838 3 -+ 0.636514 3 1 2 3 10 TCGA-DX-A7ES-01A-31R-A39D-07 Nchr14~106134904~IGLL5 intergenic "-," "IGLL5,IGLC1," chr14~chr22 106134904 23237686 3 +- 1.098612 1 1 0 1 2 TCGA-DX-A7ES-01A-31R-A39D-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 11 -+ 2.019815 10 6 4 10 70 TCGA-DX-A7ES-01A-31R-A39D-07 PSMB7~NR6A1 fusion "PSMB7," "NR6A1," chr9~chr9 127167596 127316837 2 -- 0.693147 2 1 1 2 110 TCGA-DX-A7ES-01A-31R-A39D-07 PSMB7~NR6A1 fusion "PSMB7," "NR6A1," chr9~chr9 127167596 127316849 33 -- 2.734788 33 13 20 33 140 TCGA-DX-A7ES-01A-31R-A39D-07 PSMB7~Nchr12~75030157 intergenic "PSMB7," "-," chr9~chr12 127146877 75030157 63 -+ 2.52636 65 58 2 65 608 TCGA-DX-A7ES-01A-31R-A39D-07 PSMB7~Nchr12~75039310 intergenic "PSMB7," "-," chr9~chr12 127146877 75039310 72 -+ 2.897135 69 32 37 69 470 TCGA-DX-A7ES-01A-31R-A39D-07 PSMB7~Nchr12~75126121 intergenic "PSMB7," "-," chr9~chr12 127146877 75126121 4 -+ 1.386294 4 3 1 4 14 TCGA-DX-A7ES-01A-31R-A39D-07 PSMB7~Nchr12~96583744 intergenic "PSMB7," "-," chr9~chr12 127167596 96583744 15 -- 2.083766 15 3 12 15 14 TCGA-DX-A7ES-01A-31R-A39D-07 PWP1~Nchr12~107619594 intergenic "PWP1," "-," chr12~chr12 108091374 107619594 13 ++ 2.245035 13 6 7 13 22 TCGA-DX-A7ES-01A-31R-A39D-07 PWP1~Nchr12~61853462 intergenic "PWP1," "-," chr12~chr12 108098524 61853462 17 ++ 2.262386 17 5 12 17 98 TCGA-DX-A7ES-01A-31R-A39D-07 PWP1~Nchr12~61853466 intergenic "PWP1," "-," chr12~chr12 108098524 61853466 5 ++ 1.05492 5 1 4 5 96 TCGA-DX-A7ES-01A-31R-A39D-07 PWP1~Nchr12~61861281 intergenic "PWP1," "-," chr12~chr12 108098524 61861281 6 ++ 1.791759 6 3 3 6 10 TCGA-DX-A7ES-01A-31R-A39D-07 PWP1~Nchr12~61884383 intergenic "PWP1," "-," chr12~chr12 108098524 61884383 16 ++ 2.426015 15 10 5 15 64 TCGA-DX-A7ES-01A-31R-A39D-07 PWP1~Nchr19~15688355 intergenic "PWP1," "-," chr12~chr19 108086873 15688355 6 +- 1.791759 6 3 3 6 4 TCGA-DX-A7ES-01A-31R-A39D-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 3 +- 1.098612 2 0 2 2 2 TCGA-DX-A7ES-01A-31R-A39D-07 ZNF254~Nchr12~74569620 intergenic "ZNF254," "-," chr19~chr12 24289445 74569620 6 +- 1.56071 5 4 1 5 6 TCGA-DX-A7ES-01A-31R-A39D-07 ZNF681~Nchr12~61043137 intergenic "ZNF681," "-," chr19~chr12 23937625 61043137 28 -- 2.564308 26 14 12 26 50 TCGA-DX-A7ES-01A-31R-A39D-07 ZNF681~Nchr12~61043137 intergenic "ZNF681," "-," chr19~chr12 23941549 61043137 3 -- 1.098612 3 2 1 3 12 TCGA-DX-AB2S-01A-11R-A39D-07 AC096579.7~IGKJ4 fusion "IGKC,AC096579.7," "IGKJ4," chr2~chr2 89157090 89160418 3 -- 0.636514 3 0 3 3 106 TCGA-DX-AB2S-01A-11R-A39D-07 AC096579.7~Nchr14~106134679 intergenic "IGKC,AC096579.7," "-," chr2~chr14 89156855 106134679 11 +- 1.666333 7 6 1 7 4 TCGA-DX-AB2S-01A-11R-A39D-07 AE000659.2~AE000661.28 fusion "AE000659.2," "AE000661.28,TRAC," chr14~chr14 22409671 23016447 2 ++ 0.693147 2 2 0 2 2 TCGA-DX-AB2S-01A-11R-A39D-07 ASH1L~Nchr1~174004217 intergenic "RP11-29H23.1,ASH1L," "-," chr1~chr1 155531944 174004217 4 -- 1.386294 4 3 1 4 16 TCGA-DX-AB2S-01A-11R-A39D-07 ASH1L~Nchr1~174006144 intergenic "RP11-29H23.1,ASH1L," "-," chr1~chr1 155531944 174006144 3 -- 1.098612 3 2 1 3 14 TCGA-DX-AB2S-01A-11R-A39D-07 ASH1L~RC3H1 fusion "RP11-29H23.1,ASH1L," "RC3H1," chr1~chr1 155531944 173962273 4 -- 1.386294 4 4 0 4 22 TCGA-DX-AB2S-01A-11R-A39D-07 CCT2~TSPAN8 fusion "CCT2," "TSPAN8," chr12~chr12 69986883 71676599 30 +- 2.684494 21 14 7 21 78 TCGA-DX-AB2S-01A-11R-A39D-07 CNOT2~Nchr12~86096659 intergenic "CNOT2," "-," chr12~chr12 70672054 86096659 28 ++ 2.245049 21 16 5 21 50 TCGA-DX-AB2S-01A-11R-A39D-07 COQ10A~Nchr12~60827357 intergenic "COQ10A," "-," chr12~chr12 56663345 60827357 3 +- 0.636514 3 3 0 3 6 TCGA-DX-AB2S-01A-11R-A39D-07 COQ10A~Nchr12~60827812 intergenic "COQ10A," "-," chr12~chr12 56664102 60827812 4 +- 1.386294 4 3 1 4 38 TCGA-DX-AB2S-01A-11R-A39D-07 COQ10A~Nchr12~60827812 intergenic "COQ10A," "-," chr12~chr12 56663345 60827812 3 +- 1.098612 3 2 1 3 22 TCGA-DX-AB2S-01A-11R-A39D-07 COQ10A~Nchr12~60827815 intergenic "COQ10A," "-," chr12~chr12 56663345 60827815 9 +- 1.735126 8 7 1 8 24 TCGA-DX-AB2S-01A-11R-A39D-07 COQ10A~Nchr12~60827815 intergenic "COQ10A," "-," chr12~chr12 56664102 60827815 3 +- 0.636514 3 1 2 3 40 TCGA-DX-AB2S-01A-11R-A39D-07 CTD-2021H9.1~Nchr12~85135022 intergenic "CTD-2021H9.1," "-," chr12~chr12 71421464 85135022 3 +- 1.098612 3 2 1 3 10 TCGA-DX-AB2S-01A-11R-A39D-07 DAP3~RPRD2 fusion "DAP3," "RPRD2," chr1~chr1 155695202 150437003 12 ++ 2.253858 12 4 8 12 172 TCGA-DX-AB2S-01A-11R-A39D-07 DAP3~RPRD2 fusion "DAP3," "RPRD2," chr1~chr1 155691409 150437003 12 ++ 2.138333 12 6 6 12 138 TCGA-DX-AB2S-01A-11R-A39D-07 DAP3~RPRD2 fusion "DAP3," "RPRD2," chr1~chr1 155686919 150437003 4 ++ 1.386294 4 3 1 4 82 TCGA-DX-AB2S-01A-11R-A39D-07 DAP3~RPRD2 fusion "DAP3," "RPRD2," chr1~chr1 155691409 150443037 2 ++ 0.693147 2 0 2 2 30 TCGA-DX-AB2S-01A-11R-A39D-07 DAP3~RPRD2 fusion "DAP3," "RPRD2," chr1~chr1 155686919 150443037 8 ++ 1.732868 8 7 1 8 34 TCGA-DX-AB2S-01A-11R-A39D-07 DAP3~RPRD2 fusion "DAP3," "RPRD2," chr1~chr1 155679615 150443037 2 ++ 0.693147 2 0 2 2 12 TCGA-DX-AB2S-01A-11R-A39D-07 EDF1~Nchr9~139760747 intergenic "EDF1," "-," chr9~chr9 139758303 139760747 2 +- 0.693147 2 1 1 2 14 TCGA-DX-AB2S-01A-11R-A39D-07 ELK3~Nchr12~89521106 intergenic "RP11-394J1.2,ELK3," "-," chr12~chr12 96617551 89521106 8 ++ 1.667462 6 3 3 6 16 TCGA-DX-AB2S-01A-11R-A39D-07 FAM19A2~Nchr12~58382648 intergenic "FAM19A2," "-," chr12~chr12 62671306 58382648 3 -- 1.098612 2 1 1 2 8 TCGA-DX-AB2S-01A-11R-A39D-07 FAM19A2~Nchr12~58383992 intergenic "FAM19A2," "-," chr12~chr12 62671306 58383992 4 -- 1.039721 3 2 1 3 12 TCGA-DX-AB2S-01A-11R-A39D-07 FAM19A2~RP11-620J15.3 fusion "FAM19A2," "RP11-620J15.3," chr12~chr12 62671306 58329336 7 -- 1.549826 3 1 2 3 14 TCGA-DX-AB2S-01A-11R-A39D-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31236793 31321968 4 -- 1.386294 3 2 1 3 1092 TCGA-DX-AB2S-01A-11R-A39D-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 1671 -- 2.611739 1668 1666 2 1668 498 TCGA-DX-AB2S-01A-11R-A39D-07 HLA-L~Nchr6~29864828 intergenic "HLA-L," "-," chr6~chr6 30229256 29864828 2160 ++ 2.335087 182 181 1 182 14 TCGA-DX-AB2S-01A-11R-A39D-07 HMGA2~Nchr12~58284096 intergenic "HMGA2," "-," chr12~chr12 66218968 58284096 170 -+ 3.226233 164 137 27 164 250 TCGA-DX-AB2S-01A-11R-A39D-07 IGHG1~IGHG3 fusion "IGHG1," "IGHG3," chr14~chr14 106208678 106236323 111 -- 2.270849 160 93 7 160 22 TCGA-DX-AB2S-01A-11R-A39D-07 IGHG2~IGHG3 fusion "IGHG2," "IGHG3," chr14~chr14 106109658 106235766 0 -- 1.011404 6 0 0 6 44 TCGA-DX-AB2S-01A-11R-A39D-07 IGHV3-15~IGHG1 fusion "IGHV3-15," "IGHG1," chr14~chr14 106610727 106209407 2 -- 0.693147 2 0 2 2 6 TCGA-DX-AB2S-01A-11R-A39D-07 IGHV3-23~IGHG1 fusion "IGHV3-23," "IGHG1," chr14~chr14 106725609 106209407 8 -- 1.732868 8 4 4 8 18 TCGA-DX-AB2S-01A-11R-A39D-07 IGHV3-23~IGHM fusion "IGHV3-23," "IGHM," chr14~chr14 106725609 106322322 6 -- 1.329661 5 3 2 5 42 TCGA-DX-AB2S-01A-11R-A39D-07 IGHV3-35~IGHA2 fusion "IGHV3-35," "IGHA2," chr14~chr14 106845729 106054731 23 -- 2.039582 22 5 17 22 76 TCGA-DX-AB2S-01A-11R-A39D-07 IGHV4-34~IGHG1 fusion "IGHV4-34," "IGHG1," chr14~chr14 106829979 106209407 15 -- 1.806507 6 4 2 6 66 TCGA-DX-AB2S-01A-11R-A39D-07 IGLV1-40~IGLL5 fusion "IGLV1-40," "IGLL5,IGLC1," chr22~chr22 22764469 23237555 10 ++ 1.695743 10 5 5 10 312 TCGA-DX-AB2S-01A-11R-A39D-07 IGLV1-51~IGLJ2 fusion "IGLV1-51," "IGLJ2," chr22~chr22 22677320 23241796 18 ++ 2.659323 17 7 10 17 1840 TCGA-DX-AB2S-01A-11R-A39D-07 MCL1~GRIP1 fusion "MCL1," "GRIP1," chr1~chr12 150549844 66990707 3 -- 0.636514 2 0 2 2 10 TCGA-DX-AB2S-01A-11R-A39D-07 MYL6~Nchr17~69617455 intergenic "MYL6," "-," chr12~chr17 56554423 69617455 4 ++ 1.039721 2 2 0 2 94 TCGA-DX-AB2S-01A-11R-A39D-07 NAV3~CCDC59 fusion "NAV3," "CCDC59," chr12~chr12 78598918 82617473 5 +- 1.332179 4 1 3 4 4 TCGA-DX-AB2S-01A-11R-A39D-07 NAV3~CCDC59 fusion "NAV3," "CCDC59," chr12~chr12 78598918 82625434 3 +- 1.098612 2 2 0 2 2 TCGA-DX-AB2S-01A-11R-A39D-07 NAV3~Nchr12~85736250 intergenic "NAV3," "-," chr12~chr12 78452895 85736250 13 ++ 1.778233 13 5 8 13 16 TCGA-DX-AB2S-01A-11R-A39D-07 NAV3~PPFIA2 fusion "NAV3," "PPFIA2," chr12~chr12 78553066 81851645 5 +- 1.609438 5 4 1 5 12 TCGA-DX-AB2S-01A-11R-A39D-07 NIT1~C1orf105 fusion "NIT1," "C1orf105," chr1~chr1 161090022 172431318 186 ++ 2.90502 185 124 58 185 380 TCGA-DX-AB2S-01A-11R-A39D-07 NIT1~C1orf105 fusion "NIT1," "C1orf105," chr1~chr1 161090022 172434439 3 ++ 1.098612 3 1 2 3 194 TCGA-DX-AB2S-01A-11R-A39D-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 29 -+ 1.953245 12 0 12 12 16 TCGA-DX-AB2S-01A-11R-A39D-07 Nchr12~66217722~Nchr12~58284096 intergenic "-," "-," chr12~chr12 66217722 58284096 42 -+ 2.801441 38 18 20 38 82 TCGA-DX-AB2S-01A-11R-A39D-07 Nchr12~85155004~Nchr12~84905760 intergenic "-," "-," chr12~chr12 85155004 84905760 2 -- 0.693147 1 1 0 1 4 TCGA-DX-AB2S-01A-11R-A39D-07 Nchr12~85155004~PTPRR intergenic "-," "PTPRR," chr12~chr12 85155004 71095103 8 -- 2.079442 8 7 1 8 18 TCGA-DX-AB2S-01A-11R-A39D-07 Nchr12~85817982~Nchr12~86096659 intergenic "-," "-," chr12~chr12 85817982 86096659 2 ++ 0.693147 2 0 2 2 4 TCGA-DX-AB2S-01A-11R-A39D-07 Nchr14~106134674~Nchr14~106237897 intergenic "-," "-," chr14~chr14 106134674 106237897 2 -- 0.562335 4 0 2 4 50 TCGA-DX-AB2S-01A-11R-A39D-07 Nchr14~22111703~AE000661.28 intergenic "-," "AE000661.28,TRAC," chr14~chr14 22111703 23016447 3 ++ 0.636514 3 0 3 3 10 TCGA-DX-AB2S-01A-11R-A39D-07 Nchr14~22321003~AE000661.28 intergenic "-," "AE000661.28,TRAC," chr14~chr14 22321003 23016447 3 ++ 1.098612 2 0 2 2 2 TCGA-DX-AB2S-01A-11R-A39D-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 4 -- 1.386294 3 1 2 3 2 TCGA-DX-AB2S-01A-11R-A39D-07 Nchr1~173833395~RP11-375F2.2 intergenic "-," "RP11-375F2.2," chr1~chr1 173833395 168953418 14 -+ 2.106577 2 1 1 2 4 TCGA-DX-AB2S-01A-11R-A39D-07 Nchr3~112316693~Nchr3~112316793 intergenic "-," "-," chr3~chr3 112316693 112316793 2 -- 0.693147 2 0 2 2 2 TCGA-DX-AB2S-01A-11R-A39D-07 Nchr6~29855732~HLA-C intergenic "-," "HLA-C," chr6~chr6 29855732 31239486 2 -- 0.693147 1 0 1 1 14 TCGA-DX-AB2S-01A-11R-A39D-07 Nchr6~29897418~HLA-A intergenic "-," "HLA-A," chr6~chr6 29897418 29913504 2 -- 0.693147 2 0 2 2 2 TCGA-DX-AB2S-01A-11R-A39D-07 PACSIN2~Nchr8~79858921 intergenic "PACSIN2," "-," chr22~chr8 43411027 79858921 5 -- 1.609438 4 1 3 4 24 TCGA-DX-AB2S-01A-11R-A39D-07 RP11-375F2.2~Nchr12~62673207 intergenic "RP11-375F2.2," "-," chr1~chr12 168953483 62673207 10 +- 2.025326 3 0 3 3 16 TCGA-DX-AB2S-01A-11R-A39D-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 4 ++ 1.386294 4 2 2 4 8 TCGA-DX-AB2S-01A-11R-A39D-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 39 +- 1.683595 33 0 33 33 2 TCGA-DX-AB2S-01A-11R-A39D-07 RPSAP52~Nchr12~58284096 intergenic "RPSAP52," "-," chr12~chr12 66220623 58284096 313 -+ 3.034234 313 169 143 313 908 TCGA-DX-AB2S-01A-11R-A39D-07 RPSAP52~Nchr12~58284096 intergenic "RPSAP52," "-," chr12~chr12 66220382 58284096 4 -+ 1.386294 4 3 1 4 2 TCGA-DX-AB2S-01A-11R-A39D-07 SLC16A7~OR6C74 fusion "SLC16A7," "OR6C74," chr12~chr12 59990017 55641063 4 ++ 1.386294 4 3 1 4 6 TCGA-DX-AB2S-01A-11R-A39D-07 SLC35E3~RP11-536G4.2 fusion "SLC35E3," "RP11-536G4.2," chr12~chr12 69141820 96189435 5 +- 1.332179 5 3 2 5 12 TCGA-DX-AB2S-01A-11R-A39D-07 TSPAN8~IL26 fusion "TSPAN8," "IL26," chr12~chr12 71676496 68595863 10 -- 2.163956 7 5 2 7 22 TCGA-DX-AB2S-01A-11R-A39D-07 TSPAN8~IL26 fusion "TSPAN8," "IL26," chr12~chr12 71676510 68595863 3 -- 1.098612 1 1 0 1 12 TCGA-DX-AB2S-01A-11R-A39D-07 TSPAN8~IL26 fusion "TSPAN8," "IL26," chr12~chr12 71671131 68595863 9 -- 1.889159 6 6 0 6 26 TCGA-DX-AB2S-01A-11R-A39D-07 VANGL2~Nchr12~96490038 intergenic "VANGL2," "-," chr1~chr12 160370659 96490038 35 ++ 2.822205 28 6 22 28 92 TCGA-DX-AB2S-01A-11R-A39D-07 VANGL2~Nchr12~96501759 intergenic "VANGL2," "-," chr1~chr12 160370659 96501759 2 ++ 0.693147 2 1 1 2 2 TCGA-DX-AB2S-01A-11R-A39D-07 VANGL2~Nchr12~96506642 intergenic "VANGL2," "-," chr1~chr12 160370659 96506642 4 ++ 1.386294 4 2 2 4 26 TCGA-DX-AB2S-01A-11R-A39D-07 ZBTB37~Nchr1~172118104 intergenic "ZBTB37," "-," chr1~chr1 173842704 172118104 8 +- 1.906155 7 4 3 7 56 TCGA-DX-AB2L-01A-32R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272593 94037159 7 -+ 1.351784 5 5 0 5 4 TCGA-DX-AB2L-01A-32R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264376 94038082 9 -+ 1.522955 5 4 1 5 16 TCGA-DX-AB2L-01A-32R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94047036 11 -+ 1.033562 11 10 1 11 116 TCGA-DX-AB2L-01A-32R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266809 94052369 4 -+ 0.562335 4 0 4 4 50 TCGA-DX-AB2L-01A-32R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266103 94055152 2 -+ 0.693147 2 1 1 2 42 TCGA-DX-AB2L-01A-32R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271304 94055762 4 -+ 1.039721 4 3 1 4 30 TCGA-DX-AB2L-01A-32R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266546 94055790 2 -+ 0.693147 1 1 0 1 74 TCGA-DX-AB2L-01A-32R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48263319 94058563 3 -+ 0.636514 2 1 1 2 88 TCGA-DX-AB2L-01A-32R-A41I-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272966 189859274 2 -+ 0.693147 1 0 1 1 6 TCGA-DX-AB2L-01A-32R-A41I-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48271312 189860464 2 -+ 0.693147 1 1 0 1 8 TCGA-DX-AB2L-01A-32R-A41I-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266738 189861891 2 -+ 0.693147 1 0 1 1 4 TCGA-DX-AB2L-01A-32R-A41I-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266738 189868137 7 -+ 1.351784 3 3 0 3 34 TCGA-DX-AB2L-01A-32R-A41I-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268178 189870076 8 -+ 0.735622 5 4 1 5 48 TCGA-DX-AB2L-01A-32R-A41I-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265237 189871089 4 -+ 1.039721 4 3 1 4 50 TCGA-DX-AB2L-01A-32R-A41I-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94037692 48264483 2 +- 0.693147 2 1 1 2 8 TCGA-DX-AB2L-01A-32R-A41I-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047864 48266636 6 +- 1.56071 6 1 5 6 34 TCGA-DX-AB2L-01A-32R-A41I-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189875616 48263009 20 +- 0.394398 3 2 1 3 22 TCGA-DX-AB2L-01A-32R-A41I-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189864303 48265317 4 +- 0.562335 4 1 3 4 14 TCGA-DX-AB2L-01A-32R-A41I-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870985 48265317 2 +- 0.693147 1 0 1 1 24 TCGA-DX-AB2L-01A-32R-A41I-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870985 48265998 2 +- 0.693147 2 0 2 2 46 TCGA-DX-AB2L-01A-32R-A41I-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189864621 48273337 2 +- 0.693147 1 1 0 1 28 TCGA-DX-AB2L-01A-32R-A41I-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189864303 94047036 3 ++ 0.636514 1 1 0 1 4 TCGA-DX-AB2L-01A-32R-A41I-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189870985 94047856 3 ++ 0.636514 3 2 1 3 4 TCGA-DX-AB2L-01A-32R-A41I-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189872333 94056500 5 ++ 1.332179 2 1 1 2 4 TCGA-DX-AB2L-01A-32R-A41I-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189876443 94059649 2 ++ 0.693147 2 0 2 2 36 TCGA-DX-AB2L-01A-32R-A41I-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 39 -+ 2.183066 18 0 18 18 16 TCGA-DX-AB2L-01A-32R-A41I-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 2 ++ 0.693147 2 0 2 2 8 TCGA-DX-A8BL-01A-11R-A41I-07 AC011497.1~Nchr19~43155239 intergenic "AC011497.1," "-," chr19~chr19 42929356 43155239 8 ++ 1.667462 8 6 2 8 24 TCGA-DX-A8BL-01A-11R-A41I-07 AC096579.7~Nchr14~106134679 intergenic "IGKC,AC096579.7," "-," chr2~chr14 89156855 106134679 15 +- 1.767009 15 14 1 15 42 TCGA-DX-A8BL-01A-11R-A41I-07 AKAP8L~Nchr19~4444541 intergenic "AKAP8L," "-," chr19~chr19 15514286 4444541 11 -+ 1.84622 11 7 4 11 34 TCGA-DX-A8BL-01A-11R-A41I-07 ASXL2~Nchr2~381531 intergenic "ASXL2," "-," chr2~chr2 26101035 381531 6 -- 1.56071 6 4 2 6 8 TCGA-DX-A8BL-01A-11R-A41I-07 ATAD2B~Nchr7~148175700 intergenic "ATAD2B," "-," chr2~chr7 24149425 148175700 4 -+ 1.386294 3 3 0 3 20 TCGA-DX-A8BL-01A-11R-A41I-07 CCDC50~LSAMP fusion "CCDC50," "LSAMP," chr3~chr3 191087825 116163802 11 +- 1.972247 6 0 6 6 28 TCGA-DX-A8BL-01A-11R-A41I-07 CHD6~Nchr20~39124846 intergenic "CHD6," "-," chr20~chr20 40161689 39124846 5 -- 1.332179 3 1 2 3 24 TCGA-DX-A8BL-01A-11R-A41I-07 CLEC3B~C3orf39 fusion "CLEC3B," "C3orf39," chr3~chr3 45072417 43123028 14 +- 2.540036 14 8 6 14 52 TCGA-DX-A8BL-01A-11R-A41I-07 COPE~TMED1 fusion "COPE," "TMED1," chr19~chr19 19023793 10946029 32 -- 2.593569 31 14 17 31 50 TCGA-DX-A8BL-01A-11R-A41I-07 DIDO1~Nchr20~40252343 intergenic "DIDO1," "-," chr20~chr20 61557784 40252343 5 -- 1.609438 4 4 0 4 20 TCGA-DX-A8BL-01A-11R-A41I-07 DNM2~SMARCA4 fusion "DNM2," "SMARCA4," chr19~chr19 10829079 11168931 11 ++ 1.972247 11 5 6 11 88 TCGA-DX-A8BL-01A-11R-A41I-07 DNM2~SMARCA4 fusion "DNM2," "SMARCA4," chr19~chr19 10829079 11168934 25 ++ 2.432444 25 5 20 25 88 TCGA-DX-A8BL-01A-11R-A41I-07 FAM129A~Nchr7~25888642 intergenic "FAM129A," "-," chr1~chr7 184943434 25888642 5 -- 1.609438 5 2 3 5 10 TCGA-DX-A8BL-01A-11R-A41I-07 FYN~Nchr6~112261436 intergenic "FYN," "-," chr6~chr6 112101769 112261436 20 -- 2.484367 15 0 15 15 2 TCGA-DX-A8BL-01A-11R-A41I-07 FYN~Nchr6~112360301 intergenic "FYN," "-," chr6~chr6 112101769 112360301 2 -- 0.693147 2 0 2 2 6 TCGA-DX-A8BL-01A-11R-A41I-07 HAUS8~QTRT1 fusion "HAUS8," "QTRT1," chr19~chr19 17184084 10822837 22 -+ 2.156822 22 18 4 22 164 TCGA-DX-A8BL-01A-11R-A41I-07 IGHG1~Nchr6~29895888 intergenic "IGHG1," "-," chr14~chr6 106208556 29895888 2 ++ 0.693147 1 0 1 1 26 TCGA-DX-A8BL-01A-11R-A41I-07 IGHG4~IGHG1 fusion "IGHG4," "IGHG1," chr14~chr14 106091233 106208305 8 -- 1.494175 8 0 8 8 148 TCGA-DX-A8BL-01A-11R-A41I-07 IGHV3-15~IGHG1 fusion "IGHV3-15," "IGHG1," chr14~chr14 106610727 106209407 6 -- 0.867563 6 5 1 6 28 TCGA-DX-A8BL-01A-11R-A41I-07 IGHV3-15~IGHV3-49 fusion "IGHV3-15," "IGHV3-49," chr14~chr14 106610727 107013248 2 -- 0.693147 1 1 0 1 14 TCGA-DX-A8BL-01A-11R-A41I-07 IGHV3-23~IGHV3-49 fusion "IGHV3-23," "IGHV3-49," chr14~chr14 106725609 107013248 109 -- 2.366235 68 67 1 68 240 TCGA-DX-A8BL-01A-11R-A41I-07 IGHV3-9~IGHG1 fusion "IGHV3-9," "IGHG1," chr14~chr14 106552684 106209407 9 -- 1.676988 6 5 1 6 20 TCGA-DX-A8BL-01A-11R-A41I-07 IGKV4-1~AC096579.7 fusion "IGKV4-1," "IGKC,AC096579.7," chr2~chr2 89185136 89157196 19 +- 2.458204 18 16 1 18 1354 TCGA-DX-A8BL-01A-11R-A41I-07 KDM6A~SSX1 fusion "KDM6A," "SSX1," chrX~chrX 44733233 48116657 4 ++ 0.562335 4 0 4 4 18 TCGA-DX-A8BL-01A-11R-A41I-07 KDM6A~SSX1 fusion "KDM6A," "SSX1," chrX~chrX 44733233 48121201 2 ++ 0.693147 2 1 1 2 4 TCGA-DX-A8BL-01A-11R-A41I-07 LTV1~Nchr10~131904483 intergenic "LTV1," "-," chr6~chr10 144171355 131904483 2 +- 0.693147 2 1 1 2 6 TCGA-DX-A8BL-01A-11R-A41I-07 MAP4~RBM42 fusion "MAP4," "RBM42," chr3~chr19 47956307 36123838 23 -+ 2.301092 24 11 12 24 206 TCGA-DX-A8BL-01A-11R-A41I-07 MAP4~RBM42 fusion "MAP4," "RBM42," chr3~chr19 47956307 36124000 106 -+ 2.883551 105 59 45 105 186 TCGA-DX-A8BL-01A-11R-A41I-07 MAP4~RBM42 fusion "MAP4," "RBM42," chr3~chr19 47956307 36124003 3 -+ 0.636514 3 3 0 3 186 TCGA-DX-A8BL-01A-11R-A41I-07 MED16~Nchr19~552445 intergenic "MED16," "-," chr19~chr19 875244 552445 15 -+ 1.93381 14 7 7 14 20 TCGA-DX-A8BL-01A-11R-A41I-07 NCOA7~Nchr6~136160332 intergenic "NCOA7," "-," chr6~chr6 126136550 136160332 4 +- 1.386294 2 0 2 2 8 TCGA-DX-A8BL-01A-11R-A41I-07 Nchr11~38222485~Nchr11~37925404 intergenic "-," "-," chr11~chr11 38222485 37925404 3 -- 0.636514 3 3 0 3 2 TCGA-DX-A8BL-01A-11R-A41I-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 78 -+ 2.937271 74 49 25 74 670 TCGA-DX-A8BL-01A-11R-A41I-07 Nchr6~143267081~Nchr6~127415074 intergenic "-," "-," chr6~chr6 143267081 127415074 3 -+ 1.098612 3 2 1 3 30 TCGA-DX-A8BL-01A-11R-A41I-07 Nchr6~143267081~RSPO3 intergenic "-," "RSPO3," chr6~chr6 143267081 127469793 2 -+ 0.693147 2 0 2 2 6 TCGA-DX-A8BL-01A-11R-A41I-07 NchrX~45212957~NchrX~45461542 intergenic "-," "-," chrX~chrX 45212957 45461542 4 ++ 1.386294 4 0 4 4 24 TCGA-DX-A8BL-01A-11R-A41I-07 PAM~Nchr5~101885911 intergenic "PAM," "-," chr5~chr5 102296933 101885911 10 ++ 1.609438 10 1 9 10 8 TCGA-DX-A8BL-01A-11R-A41I-07 PAM~Nchr5~101885911 intergenic "PAM," "-," chr5~chr5 102310140 101885911 6 ++ 1.56071 6 1 5 6 16 TCGA-DX-A8BL-01A-11R-A41I-07 PRKD2~Nchr20~52959293 intergenic "PRKD2," "-," chr19~chr20 47214164 52959293 8 -- 1.732868 8 7 1 8 16 TCGA-DX-A8BL-01A-11R-A41I-07 RBM39~Nchr20~20707788 intergenic "RBM39," "-," chr20~chr20 34326890 20707788 2 -- 0.693147 2 2 0 2 6 TCGA-DX-A8BL-01A-11R-A41I-07 RBM39~Nchr20~20710106 intergenic "RBM39," "-," chr20~chr20 34326890 20710106 15 -- 2.523211 15 4 11 15 12 TCGA-DX-A8BL-01A-11R-A41I-07 RP11-328J2.1~Nchr7~119140163 intergenic "RP11-328J2.1," "-," chr7~chr7 119353720 119140163 4 -- 1.039721 4 4 0 4 16 TCGA-DX-A8BL-01A-11R-A41I-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 3 ++ 1.098612 3 1 2 3 8 TCGA-DX-A8BL-01A-11R-A41I-07 RPL36~Nchr19~633984 intergenic "RPL36," "-," chr19~chr19 5690611 633984 3 ++ 1.098612 3 3 0 3 14 TCGA-DX-A8BL-01A-11R-A41I-07 RSRC1~Nchr3~103233990 intergenic "RSRC1," "-," chr3~chr3 157841780 103233990 4 ++ 1.039721 4 2 2 4 6 TCGA-DX-A8BL-01A-11R-A41I-07 RYBP~Nchr3~70698656 intergenic "RYBP," "-," chr3~chr3 72495647 70698656 16 -- 1.890363 12 8 4 12 56 TCGA-DX-A8BL-01A-11R-A41I-07 TMEM161A~TIMM44 fusion "TMEM161A," "TIMM44," chr19~chr19 19240965 8000030 4 -- 1.386294 3 1 2 3 6 TCGA-DX-A8BL-01A-11R-A41I-07 ZNF226~EIF3K fusion "ZNF226," "EIF3K," chr19~chr19 44669960 39109786 26 ++ 2.044828 25 25 0 25 146 TCGA-DX-A8BL-01A-11R-A41I-07 ZNF226~EIF3K fusion "ZNF226," "EIF3K," chr19~chr19 44669960 39110977 35 ++ 2.629405 35 30 5 35 52 TCGA-DX-A8BL-01A-11R-A41I-07 ZNF226~EIF3K fusion "ZNF226," "EIF3K," chr19~chr19 44671035 39110977 4 ++ 1.039721 4 2 2 4 48 TCGA-DX-AB36-01A-11R-A41I-07 ANO5~CPM fusion "ANO5," "CPM," chr11~chr12 22297745 69252851 19 +- 1.89542 19 6 13 19 48 TCGA-DX-AB36-01A-11R-A41I-07 C11orf67~Nchr12~109748618 intergenic "C11orf67," "-," chr11~chr12 77532287 109748618 4 +- 1.039721 1 0 1 1 16 TCGA-DX-AB36-01A-11R-A41I-07 C11orf67~Nchr18~38713508 intergenic "C11orf67," "-," chr11~chr18 77532287 38713508 28 ++ 2.263736 12 1 11 12 52 TCGA-DX-AB36-01A-11R-A41I-07 C11orf67~Nchr18~38774493 intergenic "C11orf67," "-," chr11~chr18 77532287 38774493 9 ++ 1.83102 8 0 8 8 152 TCGA-DX-AB36-01A-11R-A41I-07 C11orf67~Nchr18~38806184 intergenic "C11orf67," "-," chr11~chr18 77532287 38806184 2 ++ 0.693147 2 0 2 2 16 TCGA-DX-AB36-01A-11R-A41I-07 C18orf25~Nchr11~22119498 intergenic "C18orf25," "-," chr18~chr11 43754296 22119498 4 +- 1.039721 4 3 1 4 6 TCGA-DX-AB36-01A-11R-A41I-07 CDK17~USP30 fusion "CDK17," "USP30," chr12~chr12 96704830 109505329 3 -+ 1.098612 3 2 1 3 4 TCGA-DX-AB36-01A-11R-A41I-07 CDK4~ANO5 fusion "CDK4," "ANO5," chr12~chr11 58145958 22281065 3 -+ 0.636514 3 3 0 3 6 TCGA-DX-AB36-01A-11R-A41I-07 CDK4~ANO5 fusion "CDK4," "ANO5," chr12~chr11 58144990 22281065 2 -+ 0.693147 2 1 1 2 14 TCGA-DX-AB36-01A-11R-A41I-07 CDK4~ANO5 fusion "CDK4," "ANO5," chr12~chr11 58144706 22281065 8 -+ 1.906155 8 3 5 8 26 TCGA-DX-AB36-01A-11R-A41I-07 CDK4~ANO5 fusion "CDK4," "ANO5," chr12~chr11 58145958 22283675 3 -+ 1.098612 3 0 3 3 16 TCGA-DX-AB36-01A-11R-A41I-07 CDK4~ANO5 fusion "CDK4," "ANO5," chr12~chr11 58145958 22291858 4 -+ 0.562335 4 1 3 4 30 TCGA-DX-AB36-01A-11R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272954 94028361 2 -+ 0.693147 1 0 1 1 6 TCGA-DX-AB36-01A-11R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264271 94029520 15 -+ 1.894312 6 6 0 6 12 TCGA-DX-AB36-01A-11R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94042395 2 -+ 0.693147 1 1 0 1 28 TCGA-DX-AB36-01A-11R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94047811 8 -+ 1.073543 8 5 3 8 124 TCGA-DX-AB36-01A-11R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272677 94052375 3 -+ 1.098612 2 1 1 2 46 TCGA-DX-AB36-01A-11R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94054429 2 -+ 0.693147 2 0 2 2 88 TCGA-DX-AB36-01A-11R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272410 94055769 3 -+ 1.098612 2 1 1 2 30 TCGA-DX-AB36-01A-11R-A41I-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266264 189856240 4 -+ 1.039721 3 3 0 3 50 TCGA-DX-AB36-01A-11R-A41I-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48273675 189856910 4 -+ 1.386294 4 3 1 4 24 TCGA-DX-AB36-01A-11R-A41I-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272795 189859032 2 -+ 0.693147 1 0 1 1 36 TCGA-DX-AB36-01A-11R-A41I-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272593 189867690 2 -+ 0.693147 1 0 1 1 14 TCGA-DX-AB36-01A-11R-A41I-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266529 189867690 8 -+ 0.974315 6 6 0 6 54 TCGA-DX-AB36-01A-11R-A41I-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266782 189867745 2 -+ 0.693147 1 0 1 1 56 TCGA-DX-AB36-01A-11R-A41I-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265891 189868137 5 -+ 0.950271 1 1 0 1 20 TCGA-DX-AB36-01A-11R-A41I-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265237 189868137 3 -+ 1.098612 1 1 0 1 14 TCGA-DX-AB36-01A-11R-A41I-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48264213 189868137 3 -+ 0.636514 1 1 0 1 22 TCGA-DX-AB36-01A-11R-A41I-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266738 189868137 3 -+ 1.098612 2 1 1 2 42 TCGA-DX-AB36-01A-11R-A41I-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265891 189872611 3 -+ 1.098612 1 0 1 1 10 TCGA-DX-AB36-01A-11R-A41I-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047864 48266156 6 +- 1.791759 1 0 1 1 30 TCGA-DX-AB36-01A-11R-A41I-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48266636 5 +- 1.332179 1 0 1 1 44 TCGA-DX-AB36-01A-11R-A41I-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94037692 48266636 2 +- 0.693147 1 0 1 1 14 TCGA-DX-AB36-01A-11R-A41I-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047864 48272461 3 +- 0.636514 3 1 2 3 46 TCGA-DX-AB36-01A-11R-A41I-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48273560 20 +- 1.817382 14 0 14 14 88 TCGA-DX-AB36-01A-11R-A41I-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94047050 189867030 4 ++ 1.386294 2 0 2 2 6 TCGA-DX-AB36-01A-11R-A41I-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189858808 48270054 4 +- 1.039721 4 2 2 4 18 TCGA-DX-AB36-01A-11R-A41I-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189868155 94045736 3 ++ 0.636514 3 2 1 3 22 TCGA-DX-AB36-01A-11R-A41I-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189864577 94045736 4 ++ 1.386294 4 1 3 4 56 TCGA-DX-AB36-01A-11R-A41I-07 CRY2~IMMP1L fusion "CRY2," "IMMP1L," chr11~chr11 45883699 31455117 3 +- 1.098612 3 0 3 3 2 TCGA-DX-AB36-01A-11R-A41I-07 DAB1~Nchr11~30133879 intergenic "OMA1,DAB1,OMA1," "-," chr1~chr11 58971732 30133879 2 -+ 0.693147 2 0 2 2 4 TCGA-DX-AB36-01A-11R-A41I-07 DES~H19 fusion "DES,AC053503.6," "H19," chr2~chr11 220290835 2018972 2 -- 0.693147 1 0 1 1 4 TCGA-DX-AB36-01A-11R-A41I-07 ELK3~Nchr1~59547893 intergenic "RP11-394J1.2,ELK3," "-," chr12~chr1 96617551 59547893 3 ++ 1.098612 3 0 3 3 4 TCGA-DX-AB36-01A-11R-A41I-07 ELK3~Nchr1~59569184 intergenic "RP11-394J1.2,ELK3," "-," chr12~chr1 96617551 59569184 284 ++ 2.611809 270 108 161 270 640 TCGA-DX-AB36-01A-11R-A41I-07 ELK3~Nchr1~59592656 intergenic "RP11-394J1.2,ELK3," "-," chr12~chr1 96617551 59592656 22 ++ 1.540306 19 13 6 19 82 TCGA-DX-AB36-01A-11R-A41I-07 ELK3~Nchr1~59598019 intergenic "RP11-394J1.2,ELK3," "-," chr12~chr1 96617551 59598019 4 ++ 1.039721 4 3 1 4 46 TCGA-DX-AB36-01A-11R-A41I-07 ELK3~Nchr1~59650103 intergenic "RP11-394J1.2,ELK3," "-," chr12~chr1 96617551 59650103 15 ++ 1.506595 15 4 11 15 44 TCGA-DX-AB36-01A-11R-A41I-07 ELK3~RP4-794H19.4 fusion "RP11-394J1.2,ELK3," "RP4-794H19.4," chr12~chr1 96617551 59507844 117 ++ 2.886949 94 26 66 94 324 TCGA-DX-AB36-01A-11R-A41I-07 FGD6~RPSAP52 fusion "FGD6," "RPSAP52," chr12~chr12 95475153 66152811 13 -- 1.37782 12 4 8 12 24 TCGA-DX-AB36-01A-11R-A41I-07 FGGY~CC2D1B fusion "FGGY," "CC2D1B," chr1~chr1 60091721 52828418 31 +- 2.497695 30 25 5 30 72 TCGA-DX-AB36-01A-11R-A41I-07 FGGY~Nchr1~55881917 intergenic "FGGY," "-," chr1~chr1 60104047 55881917 4 ++ 1.386294 3 1 2 3 20 TCGA-DX-AB36-01A-11R-A41I-07 FGGY~Nchr1~55881917 intergenic "FGGY," "-," chr1~chr1 60091721 55881917 10 ++ 1.886697 7 2 5 7 12 TCGA-DX-AB36-01A-11R-A41I-07 FGGY~Nchr1~55902787 intergenic "FGGY," "-," chr1~chr1 60091721 55902787 2 ++ 0.693147 1 0 1 1 6 TCGA-DX-AB36-01A-11R-A41I-07 FGGY~Nchr1~55925042 intergenic "FGGY," "-," chr1~chr1 60091721 55925042 7 ++ 1.549826 6 1 5 6 10 TCGA-DX-AB36-01A-11R-A41I-07 FGGY~Nchr1~55925042 intergenic "FGGY," "-," chr1~chr1 60104047 55925042 6 ++ 1.791759 5 1 4 5 22 TCGA-DX-AB36-01A-11R-A41I-07 FGGY~Nchr1~55931827 intergenic "FGGY," "-," chr1~chr1 60104047 55931827 2 ++ 0.693147 1 1 0 1 36 TCGA-DX-AB36-01A-11R-A41I-07 FGGY~Nchr1~55931827 intergenic "FGGY," "-," chr1~chr1 60091721 55931827 5 ++ 1.332179 5 1 4 5 14 TCGA-DX-AB36-01A-11R-A41I-07 FGGY~Nchr1~55932573 intergenic "FGGY," "-," chr1~chr1 60104047 55932573 9 ++ 1.83102 9 3 6 9 18 TCGA-DX-AB36-01A-11R-A41I-07 FGGY~Nchr1~55976767 intergenic "FGGY," "-," chr1~chr1 60104047 55976767 17 ++ 2.231607 17 15 2 17 90 TCGA-DX-AB36-01A-11R-A41I-07 FGGY~Nchr1~55976767 intergenic "FGGY," "-," chr1~chr1 60107023 55976767 2 ++ 0.693147 2 1 1 2 64 TCGA-DX-AB36-01A-11R-A41I-07 FGGY~Nchr1~55976767 intergenic "FGGY," "-," chr1~chr1 60091721 55976767 20 ++ 1.65259 19 11 8 19 36 TCGA-DX-AB36-01A-11R-A41I-07 FGGY~RP11-466L17.1 fusion "FGGY," "RP11-466L17.1," chr1~chr1 60104047 56080594 101 ++ 2.858366 77 20 57 77 154 TCGA-DX-AB36-01A-11R-A41I-07 FGGY~RP11-466L17.1 fusion "FGGY," "RP11-466L17.1," chr1~chr1 60091721 56080594 47 ++ 2.779026 39 14 25 39 56 TCGA-DX-AB36-01A-11R-A41I-07 FGGY~RP11-466L17.1 fusion "FGGY," "RP11-466L17.1," chr1~chr1 60107023 56080594 4 ++ 1.039721 4 0 4 4 108 TCGA-DX-AB36-01A-11R-A41I-07 FRS2~Nchr12~73092084 intergenic "FRS2," "-," chr12~chr12 69965214 73092084 5 +- 0.950271 1 1 0 1 6 TCGA-DX-AB36-01A-11R-A41I-07 FRS2~Nchr12~73092084 intergenic "FRS2," "-," chr12~chr12 69966061 73092084 15 +- 1.859429 4 4 0 4 36 TCGA-DX-AB36-01A-11R-A41I-07 FRS2~Nchr12~89616039 intergenic "FRS2," "-," chr12~chr12 69925836 89616039 6 ++ 1.56071 3 1 2 3 38 TCGA-DX-AB36-01A-11R-A41I-07 FRS2~RP11-12K6.2 fusion "FRS2," "RP11-12K6.2," chr12~chr12 69965214 73122023 5 +- 1.332179 5 1 4 5 56 TCGA-DX-AB36-01A-11R-A41I-07 FRS2~RP11-12K6.2 fusion "FRS2," "RP11-12K6.2," chr12~chr12 69966061 73122023 3 +- 1.098612 3 2 1 3 178 TCGA-DX-AB36-01A-11R-A41I-07 FRS2~SLC26A10 fusion "FRS2," "SLC26A10," chr12~chr12 69968688 58014125 40 ++ 2.468878 40 24 16 40 66 TCGA-DX-AB36-01A-11R-A41I-07 HMGA2~RP11-335O4.1 fusion "HMGA2," "RP11-335O4.1," chr12~chr12 66232349 67965085 46 +- 2.686841 44 23 21 44 216 TCGA-DX-AB36-01A-11R-A41I-07 IFT81~Nchr12~62029247 intergenic "IFT81," "-," chr12~chr12 110574665 62029247 3 ++ 1.098612 3 1 2 3 16 TCGA-DX-AB36-01A-11R-A41I-07 KCTD10~B4GALNT1 fusion "KCTD10," "B4GALNT1,SLC26A10,B4GALNT1,SLC26A10," chr12~chr12 109895435 58019781 2 -+ 0.693147 2 0 2 2 4 TCGA-DX-AB36-01A-11R-A41I-07 KCTD10~Nchr18~38853919 intergenic "KCTD10," "-," chr12~chr18 109915065 38853919 2 -+ 0.693147 1 0 1 1 4 TCGA-DX-AB36-01A-11R-A41I-07 KCTD10~Nchr18~39029686 intergenic "KCTD10," "-," chr12~chr18 109915065 39029686 20 -+ 2.276423 11 0 11 11 2 TCGA-DX-AB36-01A-11R-A41I-07 KCTD10~Nchr18~39069366 intergenic "KCTD10," "-," chr12~chr18 109915065 39069366 4 -+ 1.386294 4 0 4 4 12 TCGA-DX-AB36-01A-11R-A41I-07 KCTD10~Nchr18~39084098 intergenic "KCTD10," "-," chr12~chr18 109915065 39084098 5 -+ 1.332179 4 0 4 4 8 TCGA-DX-AB36-01A-11R-A41I-07 MDM2~Nchr12~80490658 intergenic "MDM2," "-," chr12~chr12 69229764 80490658 167 +- 2.851986 142 82 40 142 208 TCGA-DX-AB36-01A-11R-A41I-07 MVK~CPM fusion "MVK," "CPM," chr12~chr12 110023930 69250459 129 +- 2.832101 127 62 65 127 306 TCGA-DX-AB36-01A-11R-A41I-07 NEGR1~ZFYVE9 fusion "NEGR1," "ZFYVE9," chr1~chr1 72748002 52682041 19 -+ 2.479122 16 7 9 16 48 TCGA-DX-AB36-01A-11R-A41I-07 Nchr10~110747321~RP11-655H13.2 intergenic "-," "RP11-655H13.2," chr10~chr10 110747321 110501019 9 -- 1.581094 7 3 4 7 62 TCGA-DX-AB36-01A-11R-A41I-07 Nchr10~110963807~Nchr10~110747417 intergenic "-," "-," chr10~chr10 110963807 110747417 3 -- 1.098612 2 1 1 2 6 TCGA-DX-AB36-01A-11R-A41I-07 Nchr11~19619891~GRIP1 intergenic "-," "GRIP1," chr11~chr12 19619891 66826408 79 +- 2.71662 75 35 40 75 318 TCGA-DX-AB36-01A-11R-A41I-07 Nchr11~19619891~NAV2 intergenic "-," "NAV2," chr11~chr11 19619891 19854030 7 ++ 1.747868 7 5 2 7 12 TCGA-DX-AB36-01A-11R-A41I-07 Nchr11~19619891~Nchr11~20582487 intergenic "-," "-," chr11~chr11 19619891 20582487 15 +- 1.801892 15 9 6 15 172 TCGA-DX-AB36-01A-11R-A41I-07 Nchr11~19619891~Nchr11~20583238 intergenic "-," "-," chr11~chr11 19619891 20583238 13 +- 1.732659 11 8 3 11 178 TCGA-DX-AB36-01A-11R-A41I-07 Nchr11~19619891~Nchr1~73113891 intergenic "-," "-," chr11~chr1 19619891 73113891 75 ++ 2.929273 95 38 32 95 420 TCGA-DX-AB36-01A-11R-A41I-07 Nchr11~19659845~Nchr11~20558280 intergenic "-," "-," chr11~chr11 19659845 20558280 2 +- 0.693147 2 1 1 2 90 TCGA-DX-AB36-01A-11R-A41I-07 Nchr11~19659845~Nchr11~20582487 intergenic "-," "-," chr11~chr11 19659845 20582487 8 +- 2.079442 7 4 3 7 168 TCGA-DX-AB36-01A-11R-A41I-07 Nchr11~19659845~Nchr11~20583238 intergenic "-," "-," chr11~chr11 19659845 20583238 7 +- 1.747868 7 3 4 7 118 TCGA-DX-AB36-01A-11R-A41I-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 28 -+ 1.768631 12 0 12 12 8 TCGA-DX-AB36-01A-11R-A41I-07 Nchr12~67788662~PTPRR intergenic "-," "PTPRR," chr12~chr12 67788662 71155406 3 +- 1.098612 3 0 3 3 20 TCGA-DX-AB36-01A-11R-A41I-07 Nchr12~68389853~Nchr12~90571491 intergenic "-," "-," chr12~chr12 68389853 90571491 7 +- 1.475076 4 0 4 4 44 TCGA-DX-AB36-01A-11R-A41I-07 Nchr12~73085284~FRS2 intergenic "-," "FRS2," chr12~chr12 73085284 69967785 6 -+ 1.56071 6 6 0 6 2 TCGA-DX-AB36-01A-11R-A41I-07 Nchr12~73092000~FRS2 intergenic "-," "FRS2," chr12~chr12 73092000 69967785 22 -+ 2.413341 13 12 1 13 56 TCGA-DX-AB36-01A-11R-A41I-07 Nchr12~77966710~NAV3 intergenic "-," "NAV3," chr12~chr12 77966710 78594253 11 -+ 2.145842 11 8 3 11 18 TCGA-DX-AB36-01A-11R-A41I-07 Nchr12~77966710~NAV3 intergenic "-," "NAV3," chr12~chr12 77966710 78598715 7 -+ 1.747868 7 3 4 7 10 TCGA-DX-AB36-01A-11R-A41I-07 Nchr12~77972162~NAV3 intergenic "-," "NAV3," chr12~chr12 77972162 78598715 5 -+ 1.609438 5 3 2 5 2 TCGA-DX-AB36-01A-11R-A41I-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 31 -+ 2.516807 30 14 16 30 126 TCGA-DX-AB36-01A-11R-A41I-07 Nchr1~59236152~TRAF6 intergenic "-," "TRAF6," chr1~chr11 59236152 36509189 2 ++ 0.693147 2 2 0 2 12 TCGA-DX-AB36-01A-11R-A41I-07 Nchr3~115510005~LSAMP intergenic "-," "LSAMP," chr3~chr3 115510005 115725983 4 ++ 1.039721 4 2 2 4 10 TCGA-DX-AB36-01A-11R-A41I-07 OTOGL~TRPV4 fusion "OTOGL," "TRPV4," chr12~chr12 80717620 110252632 13 +- 2.204785 12 6 6 12 10 TCGA-DX-AB36-01A-11R-A41I-07 OTOGL~TRPV4 fusion "OTOGL," "TRPV4," chr12~chr12 80717620 110256501 3 +- 0.636514 3 2 1 3 10 TCGA-DX-AB36-01A-11R-A41I-07 PCM1~VEZT fusion "PCM1," "VEZT," chr8~chr12 17869336 95660133 4 ++ 1.039721 4 4 0 4 12 TCGA-DX-AB36-01A-11R-A41I-07 PDHX~Nchr12~54289981 intergenic "PDHX," "-," chr11~chr12 34982065 54289981 5 ++ 1.05492 5 2 3 5 28 TCGA-DX-AB36-01A-11R-A41I-07 PPP1R12A~C12orf26 fusion "PPP1R12A," "C12orf26," chr12~chr12 80266588 82832497 7 -+ 1.747868 6 2 4 6 102 TCGA-DX-AB36-01A-11R-A41I-07 PPP1R12A~C12orf26 fusion "PPP1R12A," "C12orf26," chr12~chr12 80266588 82850506 44 -+ 2.956677 35 13 22 35 102 TCGA-DX-AB36-01A-11R-A41I-07 PPP1R12A~Nchr9~15361385 intergenic "PPP1R12A," "-," chr12~chr9 80266588 15361385 6 -+ 1.329661 3 3 0 3 22 TCGA-DX-AB36-01A-11R-A41I-07 PSAP~COL1A1 fusion "PSAP," "COL1A1," chr10~chr17 73576543 48267425 3 -- 0.636514 3 1 2 3 2 TCGA-DX-AB36-01A-11R-A41I-07 RP11-1E3.1~RP11-455B3.1 fusion "RP11-1E3.1," "RP11-455B3.1," chr5~chr5 97006388 97217134 6 ++ 1.56071 6 2 4 6 20 TCGA-DX-AB36-01A-11R-A41I-07 RP11-466L17.1~TMBIM4 fusion "RP11-466L17.1," "TMBIM4," chr1~chr12 56080675 66532549 13 +- 2.245035 6 0 6 6 16 TCGA-DX-AB36-01A-11R-A41I-07 RP11-571M6.15~Nchr12~68389721 intergenic "METTL21B,RP11-571M6.15," "-," chr12~chr12 58166911 68389721 37 ++ 2.612707 21 17 4 21 34 TCGA-DX-AB36-01A-11R-A41I-07 RP11-571M6.15~Nchr12~90571491 intergenic "METTL21B,RP11-571M6.15," "-," chr12~chr12 58166911 90571491 5 +- 1.609438 5 2 3 5 38 TCGA-DX-AB36-01A-11R-A41I-07 RP11-571M6.15~Nchr12~90641549 intergenic "METTL21B,RP11-571M6.15," "-," chr12~chr12 58166911 90641549 7 +- 0.796312 7 0 7 7 8 TCGA-DX-AB36-01A-11R-A41I-07 RP11-655H13.2~Nchr10~110241793 intergenic "RP11-655H13.2," "-," chr10~chr10 110500889 110241793 6 -- 1.56071 4 1 3 4 20 TCGA-DX-AB36-01A-11R-A41I-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 2 ++ 0.693147 2 1 1 2 4 TCGA-DX-AB36-01A-11R-A41I-07 RP4-794H19.4~RP11-366L20.2 fusion "RP4-794H19.4," "RP11-366L20.2," chr1~chr12 59487249 66270912 6 +- 1.56071 6 3 3 6 22 TCGA-DX-AB36-01A-11R-A41I-07 SLC10A7~Nchr12~54418246 intergenic "SLC10A7," "-," chr4~chr12 147425001 54418246 15 -- 1.956463 15 5 10 15 52 TCGA-DX-AB36-01A-11R-A41I-07 SPATA6~Nchr1~57466994 intergenic "SPATA6," "-," chr1~chr1 48937630 57466994 3 -+ 1.098612 3 1 2 3 12 TCGA-DX-AB36-01A-11R-A41I-07 SPATS2~ACCN2 fusion "SPATS2," "ACCN2," chr12~chr12 49893988 50470996 8 ++ 1.732868 7 5 2 7 20 TCGA-DX-AB36-01A-11R-A41I-07 TBC1D15~Nchr12~54289981 intergenic "TBC1D15," "-," chr12~chr12 72233591 54289981 6 ++ 1.011404 6 6 0 6 4 TCGA-DX-AB36-01A-11R-A41I-07 TPT1~Nchr6~144522012 intergenic "TPT1," "-," chr13~chr6 45914301 144522012 14 -- 0.754997 12 12 0 12 10 TCGA-DX-AB36-01A-11R-A41I-07 TRAF6~Nchr12~79165713 intergenic "TRAF6," "-," chr11~chr12 36514101 79165713 2 -- 0.693147 2 0 2 2 2 TCGA-DX-AB36-01A-11R-A41I-07 TRAF6~Nchr12~79165713 intergenic "TRAF6," "-," chr11~chr12 36509669 79165713 4 -- 1.039721 4 0 4 4 2 TCGA-DX-AB36-01A-11R-A41I-07 TRIM44~LDLRAD3 fusion "TRIM44," "LDLRAD3," chr11~chr11 35756993 36248635 6 ++ 1.56071 6 4 2 6 52 TCGA-DX-AB36-01A-11R-A41I-07 TSFM~Nchr12~54323411 intergenic "RP11-571M6.15,TSFM,RP11-571M6.15,TSFM," "-," chr12~chr12 58177066 54323411 9 ++ 2.197225 9 5 4 9 36 TCGA-DX-AB36-01A-11R-A41I-07 TSFM~Nchr12~78638870 intergenic "TSFM," "-," chr12~chr12 58186856 78638870 5 +- 0.950271 5 4 1 5 2 TCGA-DX-AB36-01A-11R-A41I-07 TSFM~Nchr12~78639151 intergenic "TSFM," "-," chr12~chr12 58186856 78639151 3 +- 1.098612 3 2 1 3 10 TCGA-DX-AB36-01A-11R-A41I-07 TXNDC12~Nchr12~89693629 intergenic "TXNDC12," "-," chr1~chr12 52520672 89693629 2 -+ 0.693147 2 1 1 2 6 TCGA-DX-AB36-01A-11R-A41I-07 YEATS4~ZFYVE9 fusion "YEATS4," "ZFYVE9," chr12~chr1 69753803 52682041 4 ++ 1.386294 4 2 2 4 10 TCGA-DX-AB36-01A-11R-A41I-07 ZDHHC2~FGD6 fusion "ZDHHC2," "FGD6," chr8~chr12 17014362 95478422 2 +- 0.693147 2 2 0 2 6 TCGA-DX-AB36-01A-11R-A41I-07 ZDHHC2~FGD6 fusion "ZDHHC2," "FGD6," chr8~chr12 17014362 95479684 2 +- 0.693147 2 2 0 2 14 TCGA-DX-AB36-01A-11R-A41I-07 ZDHHC2~Nchr11~29948925 intergenic "ZDHHC2," "-," chr8~chr11 17014362 29948925 4 ++ 1.039721 4 3 1 4 4 TCGA-WK-A8Y0-01A-11R-A41I-07 ACLY~TAF15 fusion "ACLY," "TAF15," chr17~chr17 40054884 34163136 2 -+ 0.693147 2 2 0 2 296 TCGA-WK-A8Y0-01A-11R-A41I-07 ACLY~TAF15 fusion "ACLY," "TAF15," chr17~chr17 40054002 34163136 173 -+ 2.918668 171 133 38 171 842 TCGA-WK-A8Y0-01A-11R-A41I-07 ACLY~TAF15 fusion "ACLY," "TAF15," chr17~chr17 40052873 34163136 12 -+ 1.704551 12 9 3 12 884 TCGA-WK-A8Y0-01A-11R-A41I-07 ALKBH5~NUF2 fusion "ALKBH5," "NUF2," chr17~chr1 18088327 163306541 3 ++ 1.098612 3 0 3 3 2 TCGA-WK-A8Y0-01A-11R-A41I-07 ALKBH5~NUF2 fusion "ALKBH5," "NUF2," chr17~chr1 18089193 163306541 5 ++ 1.332179 5 3 2 5 18 TCGA-WK-A8Y0-01A-11R-A41I-07 ALKBH5~NUF2 fusion "ALKBH5," "NUF2," chr17~chr1 18088327 163307810 3 ++ 1.098612 3 2 1 3 32 TCGA-WK-A8Y0-01A-11R-A41I-07 ALKBH5~NUF2 fusion "ALKBH5," "NUF2," chr17~chr1 18088327 163309171 2 ++ 0.693147 1 1 0 1 14 TCGA-WK-A8Y0-01A-11R-A41I-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48273560 6 +- 1.56071 5 1 4 5 10 TCGA-WK-A8Y0-01A-11R-A41I-07 DHX8~SPACA3 fusion "DHX8," "SPACA3," chr17~chr17 41561553 31323861 324 ++ 3.164031 316 206 110 316 1100 TCGA-WK-A8Y0-01A-11R-A41I-07 GPCPD1~Nchr20~9845573 intergenic "GPCPD1," "-," chr20~chr20 5556059 9845573 31 -- 2.377248 27 12 15 27 66 TCGA-WK-A8Y0-01A-11R-A41I-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31239104 31324580 3 -- 0.636514 3 1 2 3 22 TCGA-WK-A8Y0-01A-11R-A41I-07 MPRIP~Nchr13~111740205 intergenic "MPRIP," "-," chr17~chr13 16981390 111740205 2 ++ 0.693147 2 2 0 2 14 TCGA-WK-A8Y0-01A-11R-A41I-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 56 -+ 2.594214 30 0 30 30 24 TCGA-WK-A8Y0-01A-11R-A41I-07 Nchr12~56905494~Nchr12~56905374 intergenic "-," "-," chr12~chr12 56905494 56905374 4 ++ 1.039721 4 4 0 4 2 TCGA-WK-A8Y0-01A-11R-A41I-07 Nchr13~114977666~FAM155A intergenic "-," "FAM155A," chr13~chr13 114977666 107824383 5 -+ 1.609438 2 2 0 2 2 TCGA-WK-A8Y0-01A-11R-A41I-07 Nchr13~114977666~Nchr13~107660798 intergenic "-," "-," chr13~chr13 114977666 107660798 2 -+ 0.693147 1 1 0 1 4 TCGA-WK-A8Y0-01A-11R-A41I-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 5 ++ 0.500402 5 1 4 5 18 TCGA-WK-A8Y0-01A-11R-A41I-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 33 -+ 2.860815 33 18 15 33 320 TCGA-WK-A8Y0-01A-11R-A41I-07 Nchr2~115757943~AC066593.1 intergenic "-," "AC066593.1," chr2~chr2 115757943 115902604 43 -- 2.842478 32 0 32 32 40 TCGA-WK-A8Y0-01A-11R-A41I-07 Nchr2~200085989~PMS1 intergenic "-," "PMS1," chr2~chr2 200085989 190728469 5 ++ 1.332179 5 1 4 5 6 TCGA-WK-A8Y0-01A-11R-A41I-07 Nchr3~115510005~LSAMP intergenic "-," "LSAMP," chr3~chr3 115510005 115725983 2 ++ 0.693147 1 0 1 1 10 TCGA-WK-A8Y0-01A-11R-A41I-07 PGAP1~Nchr2~201122582 intergenic "PGAP1," "-," chr2~chr2 197761855 201122582 3 -+ 1.098612 3 1 2 3 2214 TCGA-WK-A8Y0-01A-11R-A41I-07 PGAP1~Nchr2~201122633 intergenic "PGAP1," "-," chr2~chr2 197761855 201122633 864 -+ 2.796326 854 451 402 854 2404 TCGA-WK-A8Y0-01A-11R-A41I-07 PMP22~DDR2 fusion "PMP22," "DDR2," chr17~chr1 15162411 162688827 7 -+ 1.747868 7 6 1 7 22 TCGA-WK-A8Y0-01A-11R-A41I-07 RANBP2~AC096669.2 fusion "RANBP2," "AC096669.2," chr2~chr2 109336134 108145320 4 +- 1.386294 4 2 2 4 8 TCGA-WK-A8Y0-01A-11R-A41I-07 RIPK1~SERPINB9 fusion "RIPK1," "SERPINB9," chr6~chr6 3064293 2900855 7 +- 1.747868 7 7 0 7 2 TCGA-WK-A8Y0-01A-11R-A41I-07 SOCS6~PMS1 fusion "SOCS6," "PMS1," chr18~chr2 67956326 190738222 6 ++ 1.242453 6 0 6 6 12 TCGA-WK-A8Y0-01A-11R-A41I-07 SPATS2L~AC066593.1 fusion "SPATS2L," "AC066593.1," chr2~chr2 201194203 115902604 5 +- 1.332179 5 5 0 5 60 TCGA-WK-A8Y0-01A-11R-A41I-07 SPATS2L~Nchr2~115758010 intergenic "SPATS2L," "-," chr2~chr2 201194203 115758010 23 +- 2.607805 5 4 1 5 30 TCGA-WK-A8Y0-01A-11R-A41I-07 SPTLC3~Nchr20~10056387 intergenic "SPTLC3," "-," chr20~chr20 13107364 10056387 5 ++ 1.332179 5 2 3 5 8 TCGA-WK-A8Y0-01A-11R-A41I-07 YWHAE~Nchr13~107660798 intergenic "YWHAE," "-," chr17~chr13 1303341 107660798 5 -+ 1.609438 4 1 3 4 34 TCGA-WK-A8Y0-01A-11R-A41I-07 YWHAE~Nchr13~107817637 intergenic "YWHAE," "-," chr17~chr13 1303341 107817637 5 -+ 1.332179 5 4 1 5 24 TCGA-WK-A8Y0-01A-11R-A41I-07 YWHAE~Nchr13~114928441 intergenic "YWHAE," "-," chr17~chr13 1303341 114928441 7 -- 1.549826 7 5 2 7 18 TCGA-WK-A8Y0-01A-11R-A41I-07 YWHAE~Nchr13~114934939 intergenic "YWHAE," "-," chr17~chr13 1303341 114934939 4 -- 1.039721 3 3 0 3 16 TCGA-WK-A8Y0-01A-11R-A41I-07 YWHAE~Nchr13~114941120 intergenic "YWHAE," "-," chr17~chr13 1303341 114941120 5 -- 1.609438 5 4 1 5 18 TCGA-WK-A8Y0-01A-11R-A41I-07 YWHAE~Nchr13~114977730 intergenic "YWHAE," "-," chr17~chr13 1303341 114977730 18 -- 2.245172 10 2 8 10 46 TCGA-WK-A8Y0-01A-11R-A41I-07 ZNF236~Nchr18~75086549 intergenic "ZNF236," "-," chr18~chr18 74659608 75086549 16 ++ 1.960095 12 9 3 12 62 TCGA-WK-A8Y0-01A-11R-A41I-07 ZNF236~Nchr2~171568393 intergenic "ZNF236," "-," chr18~chr2 74659608 171568393 6 ++ 1.56071 6 4 2 6 22 TCGA-DX-A8BJ-01A-11R-A41I-07 ADCY1~Nchr7~41048587 intergenic "ADCY1," "-," chr7~chr7 45614781 41048587 33 +- 2.264949 34 23 10 34 58 TCGA-DX-A8BJ-01A-11R-A41I-07 ADIPOR2~Nchr12~60857490 intergenic "ADIPOR2," "-," chr12~chr12 1800379 60857490 2 +- 0.693147 1 0 1 1 8 TCGA-DX-A8BJ-01A-11R-A41I-07 ASXL2~Nchr2~239884964 intergenic "ASXL2," "-," chr2~chr2 26022254 239884964 4 -+ 1.386294 4 1 3 4 4 TCGA-DX-A8BJ-01A-11R-A41I-07 ASXL2~Nchr2~239891167 intergenic "ASXL2," "-," chr2~chr2 26022254 239891167 16 -+ 1.808046 15 6 9 15 48 TCGA-DX-A8BJ-01A-11R-A41I-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271790 94048829 4 -+ 0.693147 3 2 1 3 12 TCGA-DX-A8BJ-01A-11R-A41I-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48266636 4 +- 1.039721 4 1 3 4 8 TCGA-DX-A8BJ-01A-11R-A41I-07 COL8A1~C3orf26 fusion "COL8A1," "C3orf26," chr3~chr3 99513226 99865817 4 ++ 0.562335 3 3 0 3 2 TCGA-DX-A8BJ-01A-11R-A41I-07 DHX9~Nchr2~202891307 intergenic "DHX9," "-," chr1~chr2 182812569 202891307 3 ++ 0.636514 1 0 1 1 8 TCGA-DX-A8BJ-01A-11R-A41I-07 HN1~Nchr2~174296244 intergenic "HN1," "-," chr17~chr2 73143615 174296244 3 -- 0.636514 3 3 0 3 4 TCGA-DX-A8BJ-01A-11R-A41I-07 ITM2C~Nchr2~220803370 intergenic "ITM2C," "-," chr2~chr2 231740523 220803370 3 +- 1.098612 3 3 0 3 26 TCGA-DX-A8BJ-01A-11R-A41I-07 Nchr12~104659397~Nchr12~104659506 intergenic "-," "-," chr12~chr12 104659397 104659506 2 -- 0.693147 2 0 2 2 2 TCGA-DX-A8BJ-01A-11R-A41I-07 Nchr16~66284941~CMTM2 intergenic "-," "CMTM2," chr16~chr16 66284941 66620900 8 ++ 1.906155 8 0 8 8 22 TCGA-DX-A8BJ-01A-11R-A41I-07 Nchr19~14181405~EEF1D intergenic "-," "EEF1D," chr19~chr8 14181405 144663482 8 ++ 1.073543 7 1 6 7 18 TCGA-DX-A8BJ-01A-11R-A41I-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 27 -+ 2.464971 27 15 12 27 154 TCGA-DX-A8BJ-01A-11R-A41I-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145013721 6 -+ 1.56071 3 0 3 3 4 TCGA-DX-A8BJ-01A-11R-A41I-07 Nchr2~81775871~Nchr2~82075877 intergenic "-," "-," chr2~chr2 81775871 82075877 15 ++ 2.176186 12 6 6 12 28 TCGA-DX-A8BJ-01A-11R-A41I-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 5 -- 1.332179 4 4 0 4 2 TCGA-DX-A8BJ-01A-11R-A41I-07 PALLD~ANXA10 fusion "PALLD," "ANXA10," chr4~chr4 169553051 169083679 5 ++ 1.609438 5 1 4 5 22 TCGA-DX-A8BJ-01A-11R-A41I-07 PLEKHM3~Nchr2~207899779 intergenic "PLEKHM3," "-," chr2~chr2 208773238 207899779 2 -+ 0.693147 1 1 0 1 12 TCGA-DX-A8BJ-01A-11R-A41I-07 PLEKHM3~Nchr2~207921532 intergenic "PLEKHM3," "-," chr2~chr2 208773238 207921532 3 -+ 1.098612 3 1 2 3 12 TCGA-DX-A8BJ-01A-11R-A41I-07 PPHLN1~RP11-221N13.4 fusion "PPHLN1," "RP11-221N13.4," chr12~chr12 42749024 66041174 2 ++ 0.693147 2 1 1 2 8 TCGA-DX-A8BJ-01A-11R-A41I-07 PPHLN1~RP11-221N13.4 fusion "PPHLN1," "RP11-221N13.4," chr12~chr12 42749024 66056989 11 ++ 2.019815 11 7 4 11 54 TCGA-DX-A8BJ-01A-11R-A41I-07 RAPGEF2~Nchr1~60859570 intergenic "RAPGEF2," "-," chr4~chr1 160162520 60859570 3 +- 1.098612 3 1 2 3 4 TCGA-DX-A8BJ-01A-11R-A41I-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 3 ++ 0.636514 3 3 0 3 12 TCGA-DX-A8BJ-01A-11R-A41I-07 TTC3~Nchr21~40039760 intergenic "TTC3," "-," chr21~chr21 38511014 40039760 2 ++ 0.693147 2 1 1 2 32 TCGA-DX-A8BJ-01A-11R-A41I-07 VPS41~AC073325.1 fusion "VPS41," "AC073325.1," chr7~chr7 38902145 45538574 9 -+ 1.735126 9 6 3 9 16 TCGA-DX-A8BJ-01A-11R-A41I-07 ZNF16~TRAPPC9 fusion "ZNF16," "TRAPPC9," chr8~chr8 146171397 141186760 22 -- 2.2243 22 3 19 22 80 TCGA-DX-A8BJ-01A-11R-A41I-07 ZNF283~Nchr19~42285458 intergenic "ZNF283," "-," chr19~chr19 44332433 42285458 3 ++ 0.636514 3 3 0 3 12 TCGA-DX-A8BJ-01A-11R-A41I-07 ZNF283~Nchr19~42291041 intergenic "ZNF283," "-," chr19~chr19 44332433 42291041 2 ++ 0.693147 2 2 0 2 12 TCGA-DX-A8BJ-01A-11R-A41I-07 ZNF324~Nchr8~143195436 intergenic "ZNF324," "-," chr19~chr8 58978550 143195436 2 +- 0.693147 2 0 2 2 2 TCGA-DX-AB35-01A-21R-A41I-07 AC011497.1~Nchr19~43155239 intergenic "AC011497.1," "-," chr19~chr19 42929356 43155239 2 ++ 0.693147 2 1 1 2 10 TCGA-DX-AB35-01A-21R-A41I-07 AC012158.1~Nchr12~87725707 intergenic "AC012158.1," "-," chr12~chr12 64621765 87725707 3 ++ 0.636514 3 3 0 3 34 TCGA-DX-AB35-01A-21R-A41I-07 ADNP2~Nchr18~77838750 intergenic "ADNP2," "-," chr18~chr18 77875533 77838750 7 +- 1.747868 7 5 2 7 30 TCGA-DX-AB35-01A-21R-A41I-07 AF131217.1~Nchr21~23893216 intergenic "AF131217.1," "-," chr21~chr21 29949541 23893216 3 -+ 1.098612 3 2 1 3 4 TCGA-DX-AB35-01A-21R-A41I-07 ATP5G2~Nchr4~57507665 intergenic "ATP5G2," "-," chr12~chr4 54062932 57507665 44 -+ 2.402474 41 39 2 41 52 TCGA-DX-AB35-01A-21R-A41I-07 C12orf26~PTPRQ fusion "C12orf26," "PTPRQ," chr12~chr12 82796909 81025971 3 ++ 1.098612 3 1 2 3 2 TCGA-DX-AB35-01A-21R-A41I-07 C12orf28~Nchr12~70374683 intergenic "C12orf28," "-," chr12~chr12 70304710 70374683 3 +- 1.098612 3 3 0 3 12 TCGA-DX-AB35-01A-21R-A41I-07 C12orf28~Nchr12~70374738 intergenic "C12orf28," "-," chr12~chr12 70304710 70374738 3 +- 1.098612 3 2 1 3 14 TCGA-DX-AB35-01A-21R-A41I-07 C12orf28~Nchr12~70391875 intergenic "C12orf28," "-," chr12~chr12 70304710 70391875 6 +- 1.56071 6 4 2 6 22 TCGA-DX-AB35-01A-21R-A41I-07 C12orf28~Nchr12~70439544 intergenic "C12orf28," "-," chr12~chr12 70304710 70439544 4 +- 1.386294 4 3 1 4 8 TCGA-DX-AB35-01A-21R-A41I-07 C12orf28~Nchr12~70458586 intergenic "C12orf28," "-," chr12~chr12 70304710 70458586 7 +- 1.475076 7 5 2 7 46 TCGA-DX-AB35-01A-21R-A41I-07 C12orf28~Nchr12~70497286 intergenic "C12orf28," "-," chr12~chr12 70304710 70497286 10 +- 1.359237 10 7 3 10 34 TCGA-DX-AB35-01A-21R-A41I-07 CAPS2~PTPRQ fusion "CAPS2," "PTPRQ," chr12~chr12 75784618 80998838 3 -+ 0.636514 1 0 1 1 10 TCGA-DX-AB35-01A-21R-A41I-07 CAPS2~PTPRQ fusion "CAPS2," "PTPRQ," chr12~chr12 75784102 80998838 2 -+ 0.693147 1 1 0 1 12 TCGA-DX-AB35-01A-21R-A41I-07 CASP4~Nchr12~74234776 intergenic "CASP4," "-," chr11~chr12 104817810 74234776 4 -+ 1.386294 4 3 1 4 190 TCGA-DX-AB35-01A-21R-A41I-07 CASP4~Nchr12~74239811 intergenic "CASP4," "-," chr11~chr12 104817810 74239811 57 -+ 2.516403 56 39 17 56 266 TCGA-DX-AB35-01A-21R-A41I-07 CNOT2~Nchr12~74231923 intergenic "CNOT2," "-," chr12~chr12 70704797 74231923 32 +- 2.542351 18 17 1 18 22 TCGA-DX-AB35-01A-21R-A41I-07 CNOT2~RP11-136F16.1 fusion "CNOT2," "RP11-136F16.1," chr12~chr12 70672054 78450124 32 +- 2.410223 32 18 14 32 98 TCGA-DX-AB35-01A-21R-A41I-07 CNOT2~TMTC2 fusion "CNOT2," "TMTC2," chr12~chr12 70704797 83358803 23 ++ 2.487258 22 8 14 22 110 TCGA-DX-AB35-01A-21R-A41I-07 CPSF6~KBTBD11 fusion "CPSF6," "KBTBD11," chr12~chr8 69656342 1954711 4 ++ 1.039721 4 3 1 4 4 TCGA-DX-AB35-01A-21R-A41I-07 CTDSP2~Nchr12~62029247 intergenic "CTDSP2," "-," chr12~chr12 58240155 62029247 2 -+ 0.693147 2 0 2 2 12 TCGA-DX-AB35-01A-21R-A41I-07 CTDSP2~Nchr12~62030230 intergenic "CTDSP2," "-," chr12~chr12 58240155 62030230 35 -+ 2.68843 5 5 0 5 12 TCGA-DX-AB35-01A-21R-A41I-07 CTDSP2~Nchr2~221675471 intergenic "CTDSP2," "-," chr12~chr2 58240155 221675471 21 -+ 2.067197 20 2 18 20 2 TCGA-DX-AB35-01A-21R-A41I-07 CTDSP2~Nchr2~221720455 intergenic "CTDSP2," "-," chr12~chr2 58240155 221720455 8 -+ 1.667462 6 0 6 6 20 TCGA-DX-AB35-01A-21R-A41I-07 DPP8~Nchr15~47564324 intergenic "DPP8," "-," chr15~chr15 65790202 47564324 2 -- 0.693147 2 1 1 2 2 TCGA-DX-AB35-01A-21R-A41I-07 DPP8~Nchr15~47652294 intergenic "DPP8," "-," chr15~chr15 65790202 47652294 5 -- 0.950271 5 3 2 5 34 TCGA-DX-AB35-01A-21R-A41I-07 DPY19L2~NUP107 fusion "DPY19L2," "NUP107," chr12~chr12 64062538 69124890 11 -+ 2.019815 11 4 7 11 150 TCGA-DX-AB35-01A-21R-A41I-07 DPY19L2~NUP107 fusion "DPY19L2," "NUP107," chr12~chr12 64061837 69124890 30 -+ 2.996636 30 14 16 30 826 TCGA-DX-AB35-01A-21R-A41I-07 DPY19L2~NUP107 fusion "DPY19L2," "NUP107," chr12~chr12 64060245 69124890 13 -+ 2.351673 13 6 7 13 1118 TCGA-DX-AB35-01A-21R-A41I-07 DPY19L2~NUP107 fusion "DPY19L2," "NUP107," chr12~chr12 64059830 69124890 3 -+ 1.098612 3 1 2 3 40 TCGA-DX-AB35-01A-21R-A41I-07 DPY19L2~NUP107 fusion "DPY19L2," "NUP107," chr12~chr12 64059615 69124890 261 -+ 2.849721 258 101 155 258 1556 TCGA-DX-AB35-01A-21R-A41I-07 FAM19A2~KRR1 fusion "FAM19A2," "KRR1," chr12~chr12 62585040 75902226 4 -- 1.039721 4 1 3 4 16 TCGA-DX-AB35-01A-21R-A41I-07 FAM19A2~Nchr12~73171140 intergenic "FAM19A2," "-," chr12~chr12 62585040 73171140 20 -- 2.432042 10 6 4 10 28 TCGA-DX-AB35-01A-21R-A41I-07 FAM19A2~Nchr12~73832573 intergenic "FAM19A2," "-," chr12~chr12 62585040 73832573 3 -- 1.098612 2 2 0 2 16 TCGA-DX-AB35-01A-21R-A41I-07 FAM19A2~Nchr12~74336041 intergenic "FAM19A2," "-," chr12~chr12 62585040 74336041 12 -- 2.253858 7 5 2 7 8 TCGA-DX-AB35-01A-21R-A41I-07 FAM19A2~Nchr12~74336041 intergenic "FAM19A2," "-," chr12~chr12 62585693 74336041 2 -- 0.693147 1 0 1 1 8 TCGA-DX-AB35-01A-21R-A41I-07 FAM19A2~Nchr12~75058036 intergenic "FAM19A2," "-," chr12~chr12 62585040 75058036 4 -- 1.386294 4 1 3 4 50 TCGA-DX-AB35-01A-21R-A41I-07 FAM19A2~Nchr12~75059926 intergenic "FAM19A2," "-," chr12~chr12 62585040 75059926 12 -- 2.253858 12 5 7 12 60 TCGA-DX-AB35-01A-21R-A41I-07 FAM19A2~Nchr12~75158441 intergenic "FAM19A2," "-," chr12~chr12 62585040 75158441 2 -- 0.693147 2 2 0 2 32 TCGA-DX-AB35-01A-21R-A41I-07 FAM19A2~Nchr12~75158445 intergenic "FAM19A2," "-," chr12~chr12 62585040 75158445 18 -- 2.736339 14 11 3 14 32 TCGA-DX-AB35-01A-21R-A41I-07 FAM19A2~Nchr12~75926627 intergenic "FAM19A2," "-," chr12~chr12 62585040 75926627 2 -- 0.693147 2 0 2 2 24 TCGA-DX-AB35-01A-21R-A41I-07 FAM19A2~Nchr12~79034775 intergenic "FAM19A2," "-," chr12~chr12 62585693 79034775 3 -- 0.636514 3 3 0 3 2 TCGA-DX-AB35-01A-21R-A41I-07 FAM19A2~Nchr12~79034775 intergenic "FAM19A2," "-," chr12~chr12 62585040 79034775 7 -- 1.153742 3 1 2 3 2 TCGA-DX-AB35-01A-21R-A41I-07 FAM19A2~Nchr12~79077681 intergenic "FAM19A2," "-," chr12~chr12 62585040 79077681 9 -- 1.889159 3 1 2 3 46 TCGA-DX-AB35-01A-21R-A41I-07 FRS2~Nchr12~61595221 intergenic "FRS2," "-," chr12~chr12 69934554 61595221 2 ++ 0.693147 2 0 2 2 2 TCGA-DX-AB35-01A-21R-A41I-07 FRS2~Nchr12~61725019 intergenic "FRS2," "-," chr12~chr12 69925836 61725019 2 ++ 0.693147 1 0 1 1 18 TCGA-DX-AB35-01A-21R-A41I-07 FRS2~Nchr12~62029247 intergenic "FRS2," "-," chr12~chr12 69925836 62029247 7 ++ 1.549826 2 2 0 2 14 TCGA-DX-AB35-01A-21R-A41I-07 FRS2~Nchr12~62030230 intergenic "FRS2," "-," chr12~chr12 69925836 62030230 9 ++ 1.889159 1 0 1 1 10 TCGA-DX-AB35-01A-21R-A41I-07 FRS2~Nchr12~69463787 intergenic "FRS2," "-," chr12~chr12 69925836 69463787 5 +- 1.332179 5 2 3 5 14 TCGA-DX-AB35-01A-21R-A41I-07 FRS2~Nchr12~69465962 intergenic "FRS2," "-," chr12~chr12 69925836 69465962 2 +- 0.693147 2 2 0 2 20 TCGA-DX-AB35-01A-21R-A41I-07 FRS2~Nchr12~69476747 intergenic "FRS2," "-," chr12~chr12 69934554 69476747 6 +- 1.329661 6 1 5 6 32 TCGA-DX-AB35-01A-21R-A41I-07 FRS2~Nchr12~71709620 intergenic "FRS2," "-," chr12~chr12 69956054 71709620 34 +- 2.302362 27 10 17 27 66 TCGA-DX-AB35-01A-21R-A41I-07 FRS2~Nchr12~71709658 intergenic "FRS2," "-," chr12~chr12 69956054 71709658 2 +- 0.693147 1 0 1 1 72 TCGA-DX-AB35-01A-21R-A41I-07 FRS2~Nchr12~71710010 intergenic "FRS2," "-," chr12~chr12 69956054 71710010 25 +- 1.886429 21 11 10 21 124 TCGA-DX-AB35-01A-21R-A41I-07 FRS2~Nchr12~71710813 intergenic "FRS2," "-," chr12~chr12 69956054 71710813 5 +- 1.332179 5 1 4 5 132 TCGA-DX-AB35-01A-21R-A41I-07 FRS2~Nchr12~76184410 intergenic "FRS2," "-," chr12~chr12 69956054 76184410 4 ++ 1.039721 3 0 3 3 48 TCGA-DX-AB35-01A-21R-A41I-07 FRS2~Nchr12~76224750 intergenic "FRS2," "-," chr12~chr12 69956054 76224750 13 ++ 1.479133 12 5 7 12 54 TCGA-DX-AB35-01A-21R-A41I-07 FRS2~PTPRR fusion "FRS2," "PTPRR," chr12~chr12 69925836 71095103 13 +- 2.351673 10 1 9 10 42 TCGA-DX-AB35-01A-21R-A41I-07 GLIPR1~Nchr12~83770953 intergenic "GLIPR1," "-," chr12~chr12 75875859 83770953 29 ++ 2.365432 28 9 19 28 142 TCGA-DX-AB35-01A-21R-A41I-07 HMGA2~RP11-338E21.1 fusion "HMGA2," "RP11-338E21.1," chr12~chr12 66232349 64992996 956 +- 3.061433 919 305 614 919 3888 TCGA-DX-AB35-01A-21R-A41I-07 HMGA2~RP11-338E21.1 fusion "HMGA2," "RP11-338E21.1," chr12~chr12 66232349 64993014 147 +- 3.173184 139 49 90 139 3948 TCGA-DX-AB35-01A-21R-A41I-07 KCNC2~PTPRR fusion "KCNC2," "PTPRR," chr12~chr12 75509318 71054877 3 -- 0.636514 3 1 2 3 12 TCGA-DX-AB35-01A-21R-A41I-07 KCNC2~PTPRR fusion "KCNC2," "PTPRR," chr12~chr12 75509927 71054877 5 -- 1.05492 3 3 0 3 6 TCGA-DX-AB35-01A-21R-A41I-07 LEMD3~Nchr12~74089563 intergenic "LEMD3," "-," chr12~chr12 65612399 74089563 5 ++ 1.609438 4 2 2 4 18 TCGA-DX-AB35-01A-21R-A41I-07 LEMD3~Nchr12~74095184 intergenic "LEMD3," "-," chr12~chr12 65612399 74095184 7 ++ 1.747868 7 5 2 7 42 TCGA-DX-AB35-01A-21R-A41I-07 MDM2~Nchr12~66508338 intergenic "MDM2," "-," chr12~chr12 69210725 66508338 12 ++ 1.86368 12 6 6 12 134 TCGA-DX-AB35-01A-21R-A41I-07 MDM2~Nchr12~66508382 intergenic "MDM2," "-," chr12~chr12 69210725 66508382 21 ++ 2.108294 17 0 17 17 146 TCGA-DX-AB35-01A-21R-A41I-07 MDM2~Nchr12~66508382 intergenic "MDM2," "-," chr12~chr12 69207408 66508382 8 ++ 1.073543 7 1 6 7 56 TCGA-DX-AB35-01A-21R-A41I-07 MDM2~Nchr12~69418640 intergenic "MDM2," "-," chr12~chr12 69207408 69418640 5 ++ 1.332179 5 2 3 5 12 TCGA-DX-AB35-01A-21R-A41I-07 MDM2~Nchr12~69418640 intergenic "MDM2," "-," chr12~chr12 69210725 69418640 4 ++ 1.386294 3 1 2 3 34 TCGA-DX-AB35-01A-21R-A41I-07 MDM2~Nchr12~69440775 intergenic "MDM2," "-," chr12~chr12 69207408 69440775 4 ++ 1.039721 4 2 2 4 12 TCGA-DX-AB35-01A-21R-A41I-07 MDM2~RP11-415I12.2 fusion "MDM2," "RP11-415I12.2," chr12~chr12 69203072 64082272 136 +- 3.008935 79 16 63 79 124 TCGA-DX-AB35-01A-21R-A41I-07 NAV3~Nchr12~76333705 intergenic "NAV3," "-," chr12~chr12 78225484 76333705 4 ++ 1.039721 4 1 3 4 12 TCGA-DX-AB35-01A-21R-A41I-07 NAV3~Nchr12~76350989 intergenic "NAV3," "-," chr12~chr12 78225484 76350989 24 ++ 2.089627 24 5 18 24 662 TCGA-DX-AB35-01A-21R-A41I-07 NAV3~Nchr12~76351566 intergenic "NAV3," "-," chr12~chr12 78225484 76351566 26 ++ 2.032448 26 5 21 26 654 TCGA-DX-AB35-01A-21R-A41I-07 NAV3~Nchr12~76351571 intergenic "NAV3," "-," chr12~chr12 78225484 76351571 2 ++ 0.693147 2 0 2 2 650 TCGA-DX-AB35-01A-21R-A41I-07 NAV3~Nchr12~76356089 intergenic "NAV3," "-," chr12~chr12 78225484 76356089 3 ++ 0.636514 3 2 1 3 26 TCGA-DX-AB35-01A-21R-A41I-07 NAV3~Nchr12~76399341 intergenic "NAV3," "-," chr12~chr12 78225484 76399341 59 ++ 2.953032 59 16 42 59 210 TCGA-DX-AB35-01A-21R-A41I-07 NAV3~Nchr12~92645983 intergenic "NAV3," "-," chr12~chr12 78285644 92645983 4 -+ 1.386294 1 0 1 1 12 TCGA-DX-AB35-01A-21R-A41I-07 NAV3~PAWR fusion "NAV3," "PAWR," chr12~chr12 78225484 80014987 13 +- 2.098147 11 5 6 11 24 TCGA-DX-AB35-01A-21R-A41I-07 NAV3~RP11-290L1.5 fusion "NAV3," "RP11-290L1.5," chr12~chr12 78225484 76360144 90 ++ 2.792661 86 50 36 86 578 TCGA-DX-AB35-01A-21R-A41I-07 NCAM2~Nchr21~28543481 intergenic "NCAM2," "-," chr21~chr21 22370936 28543481 15 ++ 2.02623 11 9 2 11 52 TCGA-DX-AB35-01A-21R-A41I-07 Nchr10~77530612~C10orf11 intergenic "-," "C10orf11," chr10~chr10 77530612 77795766 5 ++ 1.332179 5 0 5 5 18 TCGA-DX-AB35-01A-21R-A41I-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 34 -+ 2.049908 18 0 18 18 46 TCGA-DX-AB35-01A-21R-A41I-07 Nchr12~115453534~AACS intergenic "-," "AACS," chr12~chr12 115453534 125575972 2 ++ 0.693147 2 0 2 2 8 TCGA-DX-AB35-01A-21R-A41I-07 Nchr12~58135010~TSPAN31 intergenic "-," "TSPAN31,CDK4," chr12~chr12 58135010 58142987 13 -+ 2.458311 9 2 7 9 76 TCGA-DX-AB35-01A-21R-A41I-07 Nchr12~66470051~PTPRQ intergenic "-," "PTPRQ," chr12~chr12 66470051 81007089 2 +- 0.693147 2 0 2 2 8 TCGA-DX-AB35-01A-21R-A41I-07 Nchr12~66470051~PTPRQ intergenic "-," "PTPRQ," chr12~chr12 66470051 81017814 5 +- 1.05492 5 0 5 5 34 TCGA-DX-AB35-01A-21R-A41I-07 Nchr12~66508480~Nchr12~69418640 intergenic "-," "-," chr12~chr12 66508480 69418640 8 ++ 1.320888 6 0 6 6 38 TCGA-DX-AB35-01A-21R-A41I-07 Nchr12~69418502~RP11-745O10.4 intergenic "-," "TMBIM4,RP11-745O10.4,TMBIM4," chr12~chr12 69418502 66547228 5 -- 1.332179 4 4 0 4 2 TCGA-DX-AB35-01A-21R-A41I-07 Nchr12~69418502~TMBIM4 intergenic "-," "TMBIM4," chr12~chr12 69418502 66554952 2 -- 0.693147 2 1 1 2 6 TCGA-DX-AB35-01A-21R-A41I-07 Nchr12~69447699~RP11-745O10.4 intergenic "-," "TMBIM4,RP11-745O10.4,TMBIM4," chr12~chr12 69447699 66547228 5 -- 0.950271 5 5 0 5 6 TCGA-DX-AB35-01A-21R-A41I-07 Nchr12~69458574~RP11-745O10.4 intergenic "-," "TMBIM4,RP11-745O10.4,TMBIM4," chr12~chr12 69458574 66547228 7 -- 1.277034 3 3 0 3 4 TCGA-DX-AB35-01A-21R-A41I-07 Nchr12~69517910~TMTC2 intergenic "-," "TMTC2," chr12~chr12 69517910 83456973 10 +- 1.886697 10 5 5 10 14 TCGA-DX-AB35-01A-21R-A41I-07 Nchr12~73171036~Nchr12~79077681 intergenic "-," "-," chr12~chr12 73171036 79077681 26 -- 2.22491 8 2 6 8 22 TCGA-DX-AB35-01A-21R-A41I-07 Nchr12~73997230~TMTC2 intergenic "-," "TMTC2," chr12~chr12 73997230 83358803 15 -+ 2.268605 9 0 9 9 28 TCGA-DX-AB35-01A-21R-A41I-07 Nchr12~74016621~TMTC2 intergenic "-," "TMTC2," chr12~chr12 74016621 83358803 4 -+ 1.039721 3 1 2 3 20 TCGA-DX-AB35-01A-21R-A41I-07 Nchr12~74214590~TMTC2 intergenic "-," "TMTC2," chr12~chr12 74214590 83358803 3 -+ 1.098612 3 0 3 3 6 TCGA-DX-AB35-01A-21R-A41I-07 Nchr12~74335897~TMTC2 intergenic "-," "TMTC2," chr12~chr12 74335897 83358803 5 -+ 1.332179 3 0 3 3 12 TCGA-DX-AB35-01A-21R-A41I-07 Nchr12~74544782~Nchr12~74336041 intergenic "-," "-," chr12~chr12 74544782 74336041 3 -- 1.098612 2 2 0 2 12 TCGA-DX-AB35-01A-21R-A41I-07 Nchr12~79034641~TMEM5 intergenic "-," "TMEM5," chr12~chr12 79034641 64195871 8 -+ 1.732868 5 3 2 5 16 TCGA-DX-AB35-01A-21R-A41I-07 Nchr12~79077566~XPOT intergenic "-," "XPOT," chr12~chr12 79077566 64828287 41 -+ 2.807246 26 26 0 26 100 TCGA-DX-AB35-01A-21R-A41I-07 Nchr14~45066112~Nchr14~44862941 intergenic "-," "-," chr14~chr14 45066112 44862941 4 -- 1.386294 2 2 0 2 6 TCGA-DX-AB35-01A-21R-A41I-07 Nchr16~79619777~Nchr16~79246798 intergenic "-," "-," chr16~chr16 79619777 79246798 3 -- 0.636514 3 0 3 3 16 TCGA-DX-AB35-01A-21R-A41I-07 Nchr17~13937325~AC015842.1 intergenic "-," "AC015842.1," chr17~chr17 13937325 13680666 2 -- 0.693147 2 2 0 2 6 TCGA-DX-AB35-01A-21R-A41I-07 Nchr17~16344444~RP11-284H19.1 intergenic "-," "RP11-284H19.1," chr17~chr12 16344444 20514768 6 +- 1.242453 6 2 4 6 10 TCGA-DX-AB35-01A-21R-A41I-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 4 -- 1.039721 2 0 2 2 8 TCGA-DX-AB35-01A-21R-A41I-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 29 -+ 2.817091 28 23 5 28 362 TCGA-DX-AB35-01A-21R-A41I-07 Nchr21~17603435~Nchr21~17859810 intergenic "-," "-," chr21~chr21 17603435 17859810 2 ++ 0.693147 1 1 0 1 12 TCGA-DX-AB35-01A-21R-A41I-07 Nchr9~18163979~ADAMTSL1 intergenic "-," "ADAMTSL1," chr9~chr9 18163979 18504827 3 ++ 0.636514 1 1 0 1 14 TCGA-DX-AB35-01A-21R-A41I-07 PMP22~AC003664.1 fusion "PMP22," "AC003664.1," chr17~chr17 15162411 13203304 5 -- 1.609438 5 1 4 5 10 TCGA-DX-AB35-01A-21R-A41I-07 PPM1H~SRGAP1 fusion "PPM1H," "SRGAP1,RP11-196H14.2," chr12~chr12 63328272 64436720 4 -- 1.386294 4 1 3 4 10 TCGA-DX-AB35-01A-21R-A41I-07 PRIM1~Nchr12~58264164 intergenic "PRIM1," "-," chr12~chr12 57127931 58264164 13 -- 2.204785 13 2 11 13 30 TCGA-DX-AB35-01A-21R-A41I-07 PTPRQ~Nchr12~69505261 intergenic "PTPRQ," "-," chr12~chr12 80998959 69505261 6 ++ 1.56071 5 4 1 5 18 TCGA-DX-AB35-01A-21R-A41I-07 PTPRQ~Nchr12~69516890 intergenic "PTPRQ," "-," chr12~chr12 80998959 69516890 4 ++ 1.039721 3 3 0 3 8 TCGA-DX-AB35-01A-21R-A41I-07 PTPRR~KCNC2 fusion "PTPRR," "KCNC2," chr12~chr12 71092045 75445097 34 -- 2.514132 29 16 13 29 104 TCGA-DX-AB35-01A-21R-A41I-07 PTPRR~RP11-560G2.1 fusion "PTPRR," "RP11-560G2.1," chr12~chr12 71054720 75644273 3 -+ 1.098612 3 0 3 3 10 TCGA-DX-AB35-01A-21R-A41I-07 RAD51~Nchr4~27681277 intergenic "RAD51," "-," chr15~chr4 41001314 27681277 5 ++ 0.950271 5 1 4 5 6 TCGA-DX-AB35-01A-21R-A41I-07 RAD51~Nchr4~27698902 intergenic "RAD51," "-," chr15~chr4 41001314 27698902 2 ++ 0.693147 2 2 0 2 12 TCGA-DX-AB35-01A-21R-A41I-07 RP11-1E3.1~RP11-455B3.1 fusion "RP11-1E3.1," "RP11-455B3.1," chr5~chr5 97006388 97217134 6 ++ 1.242453 5 1 4 5 10 TCGA-DX-AB35-01A-21R-A41I-07 RP11-290L1.5~PAWR fusion "RP11-290L1.5," "PAWR," chr12~chr12 76360276 80014987 15 +- 1.859429 12 3 9 12 22 TCGA-DX-AB35-01A-21R-A41I-07 RP11-415I12.2~Nchr12~92645983 intergenic "RP11-415I12.2," "-," chr12~chr12 64082160 92645983 8 -+ 2.079442 7 2 5 7 16 TCGA-DX-AB35-01A-21R-A41I-07 RP11-530C5.2~Nchr12~63493352 intergenic "RP11-530C5.2," "-," chr12~chr12 80218868 63493352 12 +- 2.138333 11 4 7 11 18 TCGA-DX-AB35-01A-21R-A41I-07 RP11-620J15.1~FRS2 fusion "RP11-620J15.1," "FRS2," chr12~chr12 58230997 69924645 18 ++ 2.428274 17 5 12 17 72 TCGA-DX-AB35-01A-21R-A41I-07 RP11-745O10.2~Nchr12~69440775 intergenic "RP11-745O10.2," "-," chr12~chr12 66524755 69440775 10 ++ 1.834372 10 3 7 10 38 TCGA-DX-AB35-01A-21R-A41I-07 SLC16A7~Nchr12~60655475 intergenic "SLC16A7," "-," chr12~chr12 59990017 60655475 3 ++ 1.098612 3 1 2 3 96 TCGA-DX-AB35-01A-21R-A41I-07 SUV420H1~Nchr11~79504614 intergenic "SUV420H1," "-," chr11~chr11 67938482 79504614 7 -+ 1.153742 7 2 5 7 22 TCGA-DX-AB35-01A-21R-A41I-07 SYT1~TBK1 fusion "SYT1," "TBK1," chr12~chr12 79441142 64889263 12 ++ 2.138333 7 7 0 7 8 TCGA-DX-AB35-01A-21R-A41I-07 TBK1~Nchr12~62089798 intergenic "TBK1," "-," chr12~chr12 64849737 62089798 93 ++ 2.891118 84 44 39 84 440 TCGA-DX-AB35-01A-21R-A41I-07 TBK1~Nchr12~62092119 intergenic "TBK1," "-," chr12~chr12 64849737 62092119 58 ++ 2.255282 61 35 23 61 242 TCGA-DX-AB35-01A-21R-A41I-07 TBK1~Nchr12~62093045 intergenic "TBK1," "-," chr12~chr12 64849737 62093045 21 ++ 2.500138 22 14 7 22 276 TCGA-DX-AB35-01A-21R-A41I-07 TBK1~Nchr12~66389906 intergenic "TBK1," "-," chr12~chr12 64849737 66389906 4 ++ 1.039721 2 0 2 2 18 TCGA-DX-AB35-01A-21R-A41I-07 TBK1~Nchr12~69458628 intergenic "TBK1," "-," chr12~chr12 64849737 69458628 6 +- 1.56071 2 1 1 2 28 TCGA-DX-AB35-01A-21R-A41I-07 TBK1~Nchr12~69463787 intergenic "TBK1," "-," chr12~chr12 64849737 69463787 35 +- 2.639113 30 14 16 30 174 TCGA-DX-AB35-01A-21R-A41I-07 TBK1~Nchr12~69465962 intergenic "TBK1," "-," chr12~chr12 64849737 69465962 23 +- 2.340951 23 10 13 23 186 TCGA-DX-AB35-01A-21R-A41I-07 TBK1~Nchr12~70829794 intergenic "TBK1," "-," chr12~chr12 64849737 70829794 10 +- 1.973001 10 7 3 10 34 TCGA-DX-AB35-01A-21R-A41I-07 TBK1~Nchr12~70837068 intergenic "TBK1," "-," chr12~chr12 64849737 70837068 4 +- 1.039721 4 2 2 4 22 TCGA-DX-AB35-01A-21R-A41I-07 TBK1~Nchr12~70846255 intergenic "TBK1," "-," chr12~chr12 64849737 70846255 8 +- 1.213008 8 0 8 8 82 TCGA-DX-AB35-01A-21R-A41I-07 TBK1~RP11-745O10.4 fusion "TBK1," "TMBIM4,RP11-745O10.4,TMBIM4," chr12~chr12 64849737 66547228 108 +- 2.902312 106 37 69 106 276 TCGA-DX-AB35-01A-21R-A41I-07 TBK1~TMBIM4 fusion "TBK1," "TMBIM4," chr12~chr12 64849737 66554952 2 +- 0.693147 2 1 1 2 10 TCGA-DX-AB35-01A-21R-A41I-07 TBK1~TMTC2 fusion "TBK1," "TMTC2," chr12~chr12 64849737 83455547 125 ++ 2.62144 42 42 0 42 36 TCGA-DX-AB35-01A-21R-A41I-07 TMEM5~Nchr12~74405651 intergenic "TMEM5," "-," chr12~chr12 64178852 74405651 6 ++ 0.867563 5 2 3 5 8 TCGA-DX-AB35-01A-21R-A41I-07 TMTC1~Nchr12~54667397 intergenic "TMTC1," "-," chr12~chr12 29757152 54667397 2 -+ 0.693147 2 2 0 2 34 TCGA-DX-AB35-01A-21R-A41I-07 TMTC1~Nchr12~54667397 intergenic "TMTC1," "-," chr12~chr12 29757111 54667397 16 -+ 2.360609 12 6 6 12 66 TCGA-DX-AB35-01A-21R-A41I-07 TMTC2~Nchr12~74551664 intergenic "TMTC2," "-," chr12~chr12 83455610 74551664 11 +- 2.019815 4 4 0 4 2 TCGA-DX-AB35-01A-21R-A41I-07 TMTC2~Nchr12~74593853 intergenic "TMTC2," "-," chr12~chr12 83455610 74593853 11 +- 2.098274 5 5 0 5 8 TCGA-DX-AB35-01A-21R-A41I-07 TMTC2~Nchr12~78820361 intergenic "TMTC2," "-," chr12~chr12 83455610 78820361 3 +- 0.636514 3 3 0 3 12 TCGA-DX-AB35-01A-21R-A41I-07 TMTC2~Nchr2~227198297 intergenic "TMTC2," "-," chr12~chr2 83455610 227198297 42 +- 2.589628 15 0 15 15 20 TCGA-DX-AB35-01A-21R-A41I-07 TMTC2~RP11-114H23.1 fusion "TMTC2," "RP11-114H23.1," chr12~chr12 83455610 76025094 69 +- 2.994898 15 15 0 15 50 TCGA-DX-AB35-01A-21R-A41I-07 TMTC2~RP11-171L9.1 fusion "TMTC2," "RP11-171L9.1," chr12~chr12 83455610 78842981 3 +- 1.098612 2 2 0 2 4 TCGA-DX-AB35-01A-21R-A41I-07 TSPAN31~Nchr12~64493423 intergenic "TSPAN31," "-," chr12~chr12 58132695 64493423 10 -- 2.025326 9 0 9 9 2 TCGA-DX-AB35-01A-21R-A41I-07 TSPAN8~Nchr12~76170701 intergenic "TSPAN8," "-," chr12~chr12 71709103 76170701 3 -+ 0.636514 3 0 3 3 2 TCGA-DX-AB35-01A-21R-A41I-07 TSPAN8~Nchr12~76176851 intergenic "TSPAN8," "-," chr12~chr12 71709103 76176851 5 -+ 1.332179 5 0 5 5 8 TCGA-DX-AB35-01A-21R-A41I-07 TSPAN8~Nchr12~76224750 intergenic "TSPAN8," "-," chr12~chr12 71709103 76224750 9 -+ 1.83102 7 3 4 7 30 TCGA-DX-AB35-01A-21R-A41I-07 YWHAE~KIAA0232 fusion "YWHAE," "KIAA0232," chr17~chr4 1303341 6788221 2 -+ 0.693147 2 1 1 2 2 TCGA-DX-AB35-01A-21R-A41I-07 YWHAE~Nchr4~6769175 intergenic "YWHAE," "-," chr17~chr4 1303341 6769175 48 -+ 2.560084 46 25 21 46 130 TCGA-DX-AB35-01A-21R-A41I-07 ZDHHC17~C12orf28 fusion "ZDHHC17," "C12orf28," chr12~chr12 77158109 70345893 4 ++ 1.386294 4 2 2 4 16 TCGA-DX-AB35-01A-21R-A41I-07 ZDHHC17~C12orf28 fusion "ZDHHC17," "C12orf28," chr12~chr12 77158109 70352029 3 ++ 1.098612 3 3 0 3 4 TCGA-DX-AB35-01A-21R-A41I-07 ZDHHC17~C12orf28 fusion "ZDHHC17," "C12orf28," chr12~chr12 77158109 70352225 4 ++ 1.039721 4 3 1 4 4 TCGA-DX-AB35-01A-21R-A41I-07 ZDHHC17~Nchr8~14908703 intergenic "ZDHHC17," "-," chr12~chr8 77158109 14908703 9 +- 1.427061 9 2 7 9 16 TCGA-DX-AB37-01A-11R-A41I-07 BBS9~Nchr7~33900207 intergenic "BBS9," "-," chr7~chr7 33644587 33900207 4 ++ 1.039721 3 1 2 3 6 TCGA-DX-AB37-01A-11R-A41I-07 CHMP2B~Nchr3~94475829 intergenic "CHMP2B," "-," chr3~chr3 87289940 94475829 6 +- 1.242453 6 1 5 6 12 TCGA-DX-AB37-01A-11R-A41I-07 CNOT2~MBD4 fusion "CNOT2," "MBD4," chr12~chr3 70713144 129152979 18 +- 2.813355 18 8 10 18 20 TCGA-DX-AB37-01A-11R-A41I-07 CNOT2~RG9MTD1 fusion "CNOT2," "RG9MTD1," chr12~chr3 70713144 101283614 6 ++ 1.011404 6 5 1 6 20 TCGA-DX-AB37-01A-11R-A41I-07 CPSF4~RP11-762I7.5 fusion "CPSF4," "RP11-762I7.5,SARNP," chr7~chr12 99040711 56184376 2 +- 0.693147 2 1 1 2 4 TCGA-DX-AB37-01A-11R-A41I-07 CPSF6~Nchr15~50648297 intergenic "CPSF6," "-," chr12~chr15 69656342 50648297 2 ++ 0.693147 2 1 1 2 2 TCGA-DX-AB37-01A-11R-A41I-07 CPSF6~RP11-611E13.2 fusion "CPSF6," "RP11-611E13.2," chr12~chr12 69656342 70636673 58 +- 2.899787 51 25 26 51 120 TCGA-DX-AB37-01A-11R-A41I-07 FGD6~PTPRR fusion "FGD6," "PTPRR," chr12~chr12 95483345 71033057 9 -- 1.735126 9 5 4 9 4 TCGA-DX-AB37-01A-11R-A41I-07 GALC~Nchr14~56035116 intergenic "GALC," "-," chr14~chr14 88429728 56035116 8 -+ 2.079442 8 3 5 8 20 TCGA-DX-AB37-01A-11R-A41I-07 HLA-C~HLA-B fusion "HLA-C," "HLA-B," chr6~chr6 31238850 31323369 213 -- 2.646656 212 211 1 212 42 TCGA-DX-AB37-01A-11R-A41I-07 IGHV3-23~IGHG1 fusion "IGHV3-23," "IGHG1," chr14~chr14 106725609 106209407 5 -- 1.332179 4 3 1 4 26 TCGA-DX-AB37-01A-11R-A41I-07 IGHV6-1~IGHA1 fusion "IGHV6-1," "IGHA1," chr14~chr14 106406008 106175001 17 -- 2.363921 17 10 7 17 90 TCGA-DX-AB37-01A-11R-A41I-07 IGKV4-1~AC096579.7 fusion "IGKV4-1," "IGKC,AC096579.7," chr2~chr2 89185136 89157196 3 +- 1.098612 3 3 0 3 82 TCGA-DX-AB37-01A-11R-A41I-07 IGKV5-2~AC096579.7 fusion "IGKV5-2," "IGKC,AC096579.7," chr2~chr2 89196859 89157196 7 +- 1.153742 7 5 2 7 8 TCGA-DX-AB37-01A-11R-A41I-07 IGLL5~Nchr22~23257852 intergenic "IGLL5,IGLC1," "-," chr22~chr22 23237566 23257852 4 -- 0.950271 1 0 0 1 8 TCGA-DX-AB37-01A-11R-A41I-07 MDM2~RP11-74K11.2 fusion "MDM2," "RP11-74K11.2," chr12~chr12 69222711 94562127 3 +- 0.636514 3 1 2 3 4 TCGA-DX-AB37-01A-11R-A41I-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 46 -+ 2.486448 27 0 27 27 10 TCGA-DX-AB37-01A-11R-A41I-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 52 -+ 2.801357 51 27 24 51 198 TCGA-DX-AB37-01A-11R-A41I-07 Nchr7~20618404~Nchr7~20368479 intergenic "-," "-," chr7~chr7 20618404 20368479 3 -- 0.636514 3 1 2 3 12 TCGA-DX-AB37-01A-11R-A41I-07 Nchr7~20618404~Nchr7~20369136 intergenic "-," "-," chr7~chr7 20618404 20369136 3 -- 0.636514 3 3 0 3 2 TCGA-DX-AB37-01A-11R-A41I-07 PCCB~GUCA1C fusion "PCCB," "GUCA1C," chr3~chr3 135980907 108639432 12 +- 2.138333 12 7 5 12 52 TCGA-DX-AB37-01A-11R-A41I-07 PLXND1~NEK11 fusion "PLXND1," "NEK11," chr3~chr3 129304634 131068401 14 -+ 2.242973 13 7 6 13 108 TCGA-DX-AB37-01A-11R-A41I-07 PLXND1~NEK11 fusion "PLXND1," "NEK11," chr3~chr3 129304795 131068401 29 -+ 2.557645 28 16 12 28 80 TCGA-DX-AB37-01A-11R-A41I-07 PLXND1~NEK11 fusion "PLXND1," "NEK11," chr3~chr3 129308194 131068401 7 -+ 1.277034 7 3 4 7 8 TCGA-DX-AB37-01A-11R-A41I-07 PLXND1~RP11-1105G2.3 fusion "PLXND1," "RP11-1105G2.3," chr3~chr12 129293179 94671913 3 -- 1.098612 2 0 2 2 14 TCGA-DX-AB37-01A-11R-A41I-07 RBM19~Nchr12~92126013 intergenic "RBM19," "-," chr12~chr12 114390317 92126013 12 -- 1.791759 12 6 6 12 10 TCGA-DX-AB37-01A-11R-A41I-07 RBM19~Nchr12~92645983 intergenic "RP11-780K2.1,RBM19," "-," chr12~chr12 114374812 92645983 9 -+ 1.889159 9 2 7 9 26 TCGA-DX-AB37-01A-11R-A41I-07 RP11-745O10.4~RP11-272B17.2 fusion "TMBIM4,RP11-745O10.4,TMBIM4," "RP11-272B17.2," chr12~chr12 66539621 59917933 15 -- 1.706057 16 8 5 16 40 TCGA-DX-AB37-01A-11R-A41I-07 RP11-96H19.1~Nchr12~47046173 intergenic "RP11-96H19.1," "-," chr12~chr12 46781755 47046173 5 ++ 1.609438 5 3 2 5 14 TCGA-DX-AB37-01A-11R-A41I-07 SH2B3~RBM19 fusion "SH2B3," "RP11-780K2.1,RBM19," chr12~chr12 111856681 114374941 3 +- 1.098612 3 0 3 3 10 TCGA-DX-AB37-01A-11R-A41I-07 ST7~TBXAS1 fusion "ST7-AS1,ST7," "TBXAS1," chr7~chr7 116593745 139706891 13 ++ 2.138397 13 10 3 13 22 TCGA-DX-AB37-01A-11R-A41I-07 SUMF1~Nchr3~181281638 intergenic "SUMF1," "-," chr3~chr3 4418014 181281638 3 -- 0.636514 3 3 0 3 6 TCGA-DX-AB37-01A-11R-A41I-07 TPT1~Nchr6~144522012 intergenic "TPT1," "-," chr13~chr6 45914301 144522012 7 -- 0.796312 6 6 0 6 8 TCGA-DX-A8BM-01A-11R-A41I-07 AC012100.1~FAM81A fusion "AC012100.1," "FAM81A," chr15~chr15 51057665 59784470 22 -+ 2.586935 22 8 14 22 56 TCGA-DX-A8BM-01A-11R-A41I-07 ARNT2~Nchr15~68166035 intergenic "ARNT2," "-," chr15~chr15 80873745 68166035 6 ++ 1.242453 6 5 1 6 14 TCGA-DX-A8BM-01A-11R-A41I-07 ATP1B2~SLC37A3 fusion "ATP1B2," "SLC37A3," chr17~chr7 7554948 140037149 5 +- 1.609438 4 0 4 4 14 TCGA-DX-A8BM-01A-11R-A41I-07 BBS9~Nchr1~63796342 intergenic "BBS9," "-," chr7~chr1 33195314 63796342 10 ++ 1.695743 9 3 6 9 10 TCGA-DX-A8BM-01A-11R-A41I-07 BRAF~Nchr13~48757312 intergenic "BRAF," "-," chr7~chr13 140501212 48757312 8 -- 1.906155 8 6 2 8 12 TCGA-DX-A8BM-01A-11R-A41I-07 C4orf36~DNAH2 fusion "C4orf36," "DNAH2," chr4~chr17 87847878 7733618 6 -+ 1.791759 6 4 2 6 8 TCGA-DX-A8BM-01A-11R-A41I-07 C5orf17~Nchr5~24200305 intergenic "C5orf17," "-," chr5~chr5 23978031 24200305 3 ++ 1.098612 3 1 2 3 4 TCGA-DX-A8BM-01A-11R-A41I-07 CCDC138~Nchr2~134580353 intergenic "CCDC138," "-," chr2~chr2 109429383 134580353 4 ++ 1.386294 4 1 3 4 6 TCGA-DX-A8BM-01A-11R-A41I-07 CD164~Nchr10~48340187 intergenic "CD164," "-," chr6~chr10 109699103 48340187 118 -- 2.783519 117 44 73 117 290 TCGA-DX-A8BM-01A-11R-A41I-07 ENO1~Nchr1~236648076 intergenic "ENO1," "-," chr1~chr1 8921250 236648076 4 -- 1.386294 4 4 0 4 2 TCGA-DX-A8BM-01A-11R-A41I-07 ITGA11~ADAMTSL3 fusion "ITGA11," "ADAMTSL3," chr15~chr15 68606117 84630325 6 -+ 1.329661 5 2 3 5 22 TCGA-DX-A8BM-01A-11R-A41I-07 IWS1~Nchr2~126194562 intergenic "IWS1," "-," chr2~chr2 128281252 126194562 7 -+ 1.475076 7 5 2 7 22 TCGA-DX-A8BM-01A-11R-A41I-07 IWS1~Nchr2~126227353 intergenic "IWS1," "-," chr2~chr2 128281252 126227353 7 -+ 1.94591 7 4 3 7 16 TCGA-DX-A8BM-01A-11R-A41I-07 IWS1~Nchr2~126242848 intergenic "IWS1," "-," chr2~chr2 128281252 126242848 2 -+ 0.693147 1 0 1 1 4 TCGA-DX-A8BM-01A-11R-A41I-07 MED29~Nchr19~33178174 intergenic "MED29," "-," chr19~chr19 39882278 33178174 18 +- 2.322188 16 4 12 16 44 TCGA-DX-A8BM-01A-11R-A41I-07 MREG~C4orf36 fusion "MREG," "C4orf36," chr2~chr4 216877956 87848027 4 -- 1.386294 3 2 1 3 6 TCGA-DX-A8BM-01A-11R-A41I-07 NID1~Nchr1~236228824 intergenic "NID1," "-," chr1~chr1 236175221 236228824 8 -- 1.559581 8 6 2 8 6 TCGA-DX-A8BM-01A-11R-A41I-07 NID1~Nchr1~236276844 intergenic "NID1," "-," chr1~chr1 236154186 236276844 2 -- 0.693147 2 1 1 2 2 TCGA-DX-A8BM-01A-11R-A41I-07 NIPBL~Nchr5~35404959 intergenic "NIPBL," "-," chr5~chr5 36976504 35404959 2 ++ 0.693147 2 1 1 2 4 TCGA-DX-A8BM-01A-11R-A41I-07 NIPBL~SPEF2 fusion "NIPBL," "SPEF2," chr5~chr5 36976504 35628562 4 ++ 1.039721 4 2 2 4 4 TCGA-DX-A8BM-01A-11R-A41I-07 NUFIP2~Nchr2~193781557 intergenic "NUFIP2," "-," chr17~chr2 27613010 193781557 3 -+ 1.098612 3 3 0 3 16 TCGA-DX-A8BM-01A-11R-A41I-07 Nchr12~94503~CBY1 intergenic "-," "RP3-508I15.9,CBY1," chr12~chr22 94503 39064022 3 ++ 1.098612 2 0 2 2 4 TCGA-DX-A8BM-01A-11R-A41I-07 Nchr14~28125544~Nchr14~27791347 intergenic "-," "-," chr14~chr14 28125544 27791347 10 -- 2.025326 9 2 7 9 24 TCGA-DX-A8BM-01A-11R-A41I-07 Nchr14~45066112~Nchr14~44862941 intergenic "-," "-," chr14~chr14 45066112 44862941 9 -- 1.889159 6 5 1 6 30 TCGA-DX-A8BM-01A-11R-A41I-07 Nchr14~45267133~Nchr14~45066216 intergenic "-," "-," chr14~chr14 45267133 45066216 4 -- 1.039721 4 1 3 4 8 TCGA-DX-A8BM-01A-11R-A41I-07 Nchr14~89952913~ATXN3 intergenic "-," "ATXN3," chr14~chr14 89952913 92529575 2 -+ 0.693147 2 1 1 2 2 TCGA-DX-A8BM-01A-11R-A41I-07 Nchr15~35838674~FANCI intergenic "-," "FANCI," chr15~chr15 35838674 89856135 3 ++ 1.098612 2 1 1 2 8 TCGA-DX-A8BM-01A-11R-A41I-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 3 ++ 0.636514 3 2 1 3 2 TCGA-DX-A8BM-01A-11R-A41I-07 Nchr18~20500725~Nchr18~20284883 intergenic "-," "-," chr18~chr18 20500725 20284883 2 -- 0.693147 1 0 1 1 6 TCGA-DX-A8BM-01A-11R-A41I-07 Nchr18~37115422~Nchr18~36788753 intergenic "-," "-," chr18~chr18 37115422 36788753 3 -- 1.098612 3 3 0 3 14 TCGA-DX-A8BM-01A-11R-A41I-07 Nchr18~37331293~Nchr18~37115579 intergenic "-," "-," chr18~chr18 37331293 37115579 6 -- 1.56071 6 5 1 6 28 TCGA-DX-A8BM-01A-11R-A41I-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151282 7 -- 1.549826 4 1 3 4 22 TCGA-DX-A8BM-01A-11R-A41I-07 Nchr18~4455006~DLGAP1 intergenic "-," "DLGAP1," chr18~chr18 4455006 4151287 20 -- 2.10817 13 2 11 13 22 TCGA-DX-A8BM-01A-11R-A41I-07 Nchr1~10507~Nchr1~23903823 intergenic "-," "-," chr1~chr1 10507 23903823 3 -- 1.098612 3 0 3 3 2 TCGA-DX-A8BM-01A-11R-A41I-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 24 -+ 2.106003 23 17 6 23 194 TCGA-DX-A8BM-01A-11R-A41I-07 Nchr1~55827238~RP11-466L17.1 intergenic "-," "RP11-466L17.1," chr1~chr1 55827238 56080594 6 ++ 1.791759 3 2 1 3 12 TCGA-DX-A8BM-01A-11R-A41I-07 Nchr20~26134777~Nchr17~21708145 intergenic "-," "-," chr20~chr17 26134777 21708145 2 ++ 0.693147 2 2 0 2 4 TCGA-DX-A8BM-01A-11R-A41I-07 Nchr4~138228524~RP11-138I17.1 intergenic "-," "RP11-138I17.1," chr4~chr4 138228524 138010754 6 -- 1.791759 3 0 3 3 4 TCGA-DX-A8BM-01A-11R-A41I-07 Nchr6~29896012~HLA-B intergenic "-," "HLA-B," chr6~chr6 29896012 31323168 6 -- 1.56071 5 1 4 5 6 TCGA-DX-A8BM-01A-11R-A41I-07 PMP22~TEKT3 fusion "PMP22," "TEKT3," chr17~chr17 15142788 15207469 10 -- 1.886697 10 5 5 10 22 TCGA-DX-A8BM-01A-11R-A41I-07 PTPN9~SLC12A1 fusion "PTPN9," "SLC12A1," chr15~chr15 75871055 48539534 3 -+ 1.098612 3 3 0 3 6 TCGA-DX-A8BM-01A-11R-A41I-07 PTPN9~SLC12A1 fusion "PTPN9," "SLC12A1," chr15~chr15 75871055 48541772 3 -+ 0.636514 3 3 0 3 2 TCGA-DX-A8BM-01A-11R-A41I-07 RASAL2~RHBDF1 fusion "RASAL2," "RHBDF1," chr1~chr16 178269253 115037 3 +- 1.098612 3 2 1 3 6 TCGA-DX-A8BM-01A-11R-A41I-07 RP11-466L17.1~RP11-90C4.1 fusion "RP11-466L17.1," "RP11-90C4.1," chr1~chr1 56080675 56297937 4 ++ 1.386294 4 3 1 4 12 TCGA-DX-A8BM-01A-11R-A41I-07 RP11-608O21.1~Nchr4~19939063 intergenic "RP11-608O21.1," "-," chr4~chr4 19457275 19939063 2 ++ 0.693147 1 1 0 1 4 TCGA-DX-A8BM-01A-11R-A41I-07 RPL41~RP11-511B23.2 fusion "RPL41," "RP11-511B23.2," chr12~chr12 56510424 93477484 4 +- 1.039721 4 0 4 4 2 TCGA-DX-A8BM-01A-11R-A41I-07 SCARB1~UBC fusion "SCARB1," "UBC," chr12~chr12 125348141 125398320 3 -- 1.098612 3 1 2 3 2 TCGA-DX-A8BM-01A-11R-A41I-07 SDF4~Nchr9~137397317 intergenic "SDF4," "-," chr1~chr9 1163848 137397317 11 -+ 2.019815 11 7 4 11 12 TCGA-DX-A8BM-01A-11R-A41I-07 SEPT10~LRCH1 fusion "SEPT10," "LRCH1," chr2~chr13 110343298 47255876 24 -+ 2.592787 17 0 17 17 44 TCGA-DX-A8BM-01A-11R-A41I-07 SNRNP70~CTNNA2 fusion "SNRNP70," "CTNNA2," chr19~chr2 49593777 79566741 9 ++ 1.522955 9 4 5 9 50 TCGA-DX-A8BM-01A-11R-A41I-07 SNRNP70~CTNNA2 fusion "SNRNP70," "CTNNA2," chr19~chr2 49593777 79566846 19 ++ 2.40616 18 12 6 18 52 TCGA-DX-A8BM-01A-11R-A41I-07 SNRNP70~CTNNA2 fusion "SNRNP70," "CTNNA2," chr19~chr2 49593777 79567074 13 ++ 1.925121 11 6 5 11 36 TCGA-DX-A8BM-01A-11R-A41I-07 SPAG16~ERBB4 fusion "SPAG16," "ERBB4," chr2~chr2 214182080 212833099 6 +- 1.329661 6 4 2 6 6 TCGA-DX-A8BM-01A-11R-A41I-07 TAOK1~Nchr18~1566453 intergenic "TAOK1," "-," chr17~chr18 27849537 1566453 22 ++ 2.350327 15 15 0 15 6 TCGA-DX-A8BM-01A-11R-A41I-07 TRIO~CTNNA2 fusion "TRIO," "CTNNA2," chr5~chr2 14336836 79478429 2 ++ 0.693147 2 1 1 2 6 TCGA-DX-A8BM-01A-11R-A41I-07 TRIO~CTNNA2 fusion "TRIO," "CTNNA2," chr5~chr2 14336836 79520313 11 ++ 2.145842 11 3 8 11 38 TCGA-DX-A8BM-01A-11R-A41I-07 TUBGCP2~SORBS1 fusion "TUBGCP2," "SORBS1," chr10~chr10 135111456 97144042 9 -- 1.83102 8 3 5 8 16 TCGA-DX-A8BM-01A-11R-A41I-07 ZNF586~AATF fusion "ZNF586," "AATF," chr19~chr17 58301768 35413901 70 ++ 2.72788 67 49 18 67 492 TCGA-DX-A8BM-01A-11R-A41I-07 ZNF586~AATF fusion "ZNF586," "AATF," chr19~chr17 58288037 35413901 15 ++ 2.083766 15 0 15 15 350 TCGA-DX-A8BM-01A-11R-A41I-07 ZNF586~AATF fusion "ZNF586," "AATF," chr19~chr17 58281246 35413901 87 ++ 3.000651 81 35 46 81 334 TCGA-DX-A8BM-01A-11R-A41I-07 ZNF704~RPS18 fusion "ZNF704," "RPS18," chr8~chr6 81785779 33243574 3 -+ 0.636514 3 3 0 3 44 TCGA-DX-A8BM-01A-11R-A41I-07 ZNF776~AATF fusion "ZNF776," "AATF," chr19~chr17 58268366 35413901 9 ++ 0.848686 8 6 2 8 20 TCGA-DX-A6BF-01A-11R-A30C-07 ACSS3~Nchr12~104599115 intergenic "ACSS3," "-," chr12~chr12 81472210 104599115 3 +- 0.636514 2 0 2 2 12 TCGA-DX-A6BF-01A-11R-A30C-07 ACSS3~Nchr12~104609410 intergenic "ACSS3," "-," chr12~chr12 81472210 104609410 10 +- 1.609438 9 6 3 9 6 TCGA-DX-A6BF-01A-11R-A30C-07 ACVR2A~AC010859.1 fusion "ACVR2A," "AC010859.1," chr2~chr8 148602776 97847201 27 ++ 2.743635 24 10 14 24 72 TCGA-DX-A6BF-01A-11R-A30C-07 ARL1~UBE2N fusion "ARL1," "UBE2N," chr12~chr12 101801420 93805075 3 -- 1.098612 3 1 2 3 24 TCGA-DX-A6BF-01A-11R-A30C-07 ASPH~Nchr11~91491257 intergenic "ASPH," "-," chr8~chr11 62531537 91491257 80 -+ 2.711317 78 46 32 78 144 TCGA-DX-A6BF-01A-11R-A30C-07 ATRX~NchrX~76648476 intergenic "ATRX," "-," chrX~chrX 77041468 76648476 3 -- 0.636514 3 0 3 3 6 TCGA-DX-A6BF-01A-11R-A30C-07 C12orf28~BEST3 fusion "C12orf28," "BEST3," chr12~chr12 70249150 70037567 2 +- 0.693147 2 1 1 2 6 TCGA-DX-A6BF-01A-11R-A30C-07 CCNK~ZNF365 fusion "CCNK," "ZNF365," chr14~chr10 99961966 64425889 14 ++ 2.106577 14 10 4 14 24 TCGA-DX-A6BF-01A-11R-A30C-07 CCNK~ZNF365 fusion "CCNK," "ZNF365," chr14~chr10 99961966 64429967 3 ++ 1.098612 3 2 1 3 18 TCGA-DX-A6BF-01A-11R-A30C-07 DNAJB4~Nchr12~102089430 intergenic "DNAJB4," "-," chr1~chr12 78444977 102089430 8 ++ 1.073543 8 0 8 8 20 TCGA-DX-A6BF-01A-11R-A30C-07 DRAM1~Nchr12~68036997 intergenic "DRAM1," "-," chr12~chr12 102295211 68036997 23 ++ 2.449734 22 12 10 22 20 TCGA-DX-A6BF-01A-11R-A30C-07 DYRK2~KCNC2 fusion "DYRK2," "KCNC2," chr12~chr12 68052631 75445097 8 +- 1.559581 8 5 3 8 14 TCGA-DX-A6BF-01A-11R-A30C-07 FADS1~RP11-169D4.2 fusion "FADS1," "RP11-169D4.2," chr11~chr11 61578223 72298845 6 -+ 1.56071 6 1 5 6 6 TCGA-DX-A6BF-01A-11R-A30C-07 FRS2~GLIPR1L2 fusion "FRS2," "GLIPR1L2," chr12~chr12 69880077 75816684 5 ++ 1.332179 5 3 2 5 124 TCGA-DX-A6BF-01A-11R-A30C-07 FRS2~GLIPR1L2 fusion "FRS2," "GLIPR1L2," chr12~chr12 69864310 75816684 66 ++ 2.780332 63 49 14 63 112 TCGA-DX-A6BF-01A-11R-A30C-07 FRS2~Nchr5~28744187 intergenic "FRS2," "-," chr12~chr5 69956054 28744187 39 ++ 2.77892 24 19 5 24 26 TCGA-DX-A6BF-01A-11R-A30C-07 HLA-DRB5~HLA-DRB6 fusion "HLA-DRB5," "HLA-DRB6," chr6~chr6 32489682 32522748 747 -- 2.349022 394 111 281 394 2 TCGA-DX-A6BF-01A-11R-A30C-07 KRR1~KCNC2 fusion "KRR1," "KCNC2," chr12~chr12 75900562 75445097 92 -- 2.518894 90 74 16 90 254 TCGA-DX-A6BF-01A-11R-A30C-07 NAV3~Nchr12~70439544 intergenic "NAV3," "-," chr12~chr12 78225484 70439544 11 +- 1.972247 9 5 4 9 12 TCGA-DX-A6BF-01A-11R-A30C-07 Nchr11~47213097~RPS20 intergenic "-," "RPS20," chr11~chr8 47213097 56986962 4 +- 1.039721 4 0 4 4 22 TCGA-DX-A6BF-01A-11R-A30C-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 19 -+ 2.302014 13 0 13 13 16 TCGA-DX-A6BF-01A-11R-A30C-07 Nchr12~76219503~KCNMB4 intergenic "-," "KCNMB4," chr12~chr12 76219503 70824265 21 -+ 1.879896 20 20 0 20 52 TCGA-DX-A6BF-01A-11R-A30C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 59 -+ 2.778822 56 33 23 56 298 TCGA-DX-A6BF-01A-11R-A30C-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145013721 6 -+ 1.791759 5 1 4 5 28 TCGA-DX-A6BF-01A-11R-A30C-07 Nchr21~17603435~Nchr21~20484436 intergenic "-," "-," chr21~chr21 17603435 20484436 33 +- 2.590808 29 14 15 29 84 TCGA-DX-A6BF-01A-11R-A30C-07 Nchr5~28744276~GLIPR1L2 intergenic "-," "GLIPR1L2," chr5~chr12 28744276 75796797 5 ++ 1.332179 1 1 0 1 14 TCGA-DX-A6BF-01A-11R-A30C-07 Nchr5~28744276~GLIPR1L2 intergenic "-," "GLIPR1L2," chr5~chr12 28744276 75804214 26 ++ 2.77117 13 11 2 13 4 TCGA-DX-A6BF-01A-11R-A30C-07 Nchr6~113902892~Nchr6~113903033 intergenic "-," "-," chr6~chr6 113902892 113903033 2 -- 0.693147 2 2 0 2 4 TCGA-DX-A6BF-01A-11R-A30C-07 PACS1~AP000439.3 fusion "PACS1," "AP000439.3," chr11~chr11 65838313 69292381 6 +- 1.791759 6 0 6 6 2 TCGA-DX-A6BF-01A-11R-A30C-07 PRPSAP2~Nchr17~65765444 intergenic "PRPSAP2," "-," chr17~chr17 18775962 65765444 2 ++ 0.693147 2 0 2 2 30 TCGA-DX-A6BF-01A-11R-A30C-07 PRPSAP2~Nchr17~65765534 intergenic "PRPSAP2," "-," chr17~chr17 18775962 65765534 5 ++ 1.609438 5 5 0 5 26 TCGA-DX-A6BF-01A-11R-A30C-07 RAB3IP~BEST3 fusion "RAB3IP," "BEST3," chr12~chr12 70150443 70072673 2 +- 0.693147 2 2 0 2 12 TCGA-DX-A6BF-01A-11R-A30C-07 RC3H1~RP11-560G2.1 fusion "RC3H1," "RP11-560G2.1," chr1~chr12 173934189 75644273 11 -+ 1.893788 11 4 7 11 20 TCGA-DX-A6BF-01A-11R-A30C-07 RP11-366L20.2~Nchr12~93023095 intergenic "RP11-366L20.2," "-," chr12~chr12 66260584 93023095 3 -+ 0.636514 1 0 1 1 8 TCGA-DX-A6BF-01A-11R-A30C-07 RPSAP52~RP11-81H14.2 fusion "RPSAP52," "RP11-81H14.2," chr12~chr12 66220623 68727444 7 -- 1.747868 7 3 4 7 14 TCGA-DX-A6BF-01A-11R-A30C-07 RPSAP52~RP11-81H14.2 fusion "RPSAP52," "RP11-81H14.2," chr12~chr12 66220623 68774511 2 -- 0.693147 2 0 2 2 16 TCGA-DX-A6BF-01A-11R-A30C-07 RPSAP52~RP11-81H14.2 fusion "RPSAP52," "RP11-81H14.2," chr12~chr12 66220623 68774567 2 -- 0.693147 2 0 2 2 22 TCGA-DX-A6BF-01A-11R-A30C-07 RPSAP52~RP11-81H14.2 fusion "RPSAP52," "RP11-81H14.2," chr12~chr12 66220623 68777382 3 -- 1.098612 2 1 1 2 22 TCGA-DX-A6BF-01A-11R-A30C-07 TMTC3~C12orf29 fusion "TMTC3," "C12orf29," chr12~chr12 88570096 88433925 8 ++ 1.906155 8 4 4 8 48 TCGA-DX-A6BF-01A-11R-A30C-07 TMTC3~C12orf29 fusion "TMTC3," "C12orf29," chr12~chr12 88570096 88436602 3 ++ 0.636514 3 3 0 3 16 TCGA-DX-A6BF-01A-11R-A30C-07 TMTC3~Nchr12~87723328 intergenic "TMTC3," "-," chr12~chr12 88536264 87723328 6 ++ 1.56071 6 0 6 6 8 TCGA-DX-A6BF-01A-11R-A30C-07 TMTC3~Nchr12~87725707 intergenic "TMTC3," "-," chr12~chr12 88536264 87725707 50 ++ 2.929226 50 33 17 50 70 TCGA-DX-A6BF-01A-11R-A30C-07 USP15~Nchr12~60413193 intergenic "USP15," "-," chr12~chr12 62749256 60413193 2 +- 0.693147 2 1 1 2 2 TCGA-DX-A6BF-01A-11R-A30C-07 USP15~RP11-296O14.3 fusion "USP15," "RP11-296O14.3," chr12~chr1 62749256 173387761 11 +- 1.767761 11 10 1 11 16 TCGA-DX-A6BF-01A-11R-A30C-07 USP15~RP11-296O14.3 fusion "USP15," "RP11-296O14.3," chr12~chr1 62749256 173393113 103 +- 2.774886 95 61 34 95 330 TCGA-DX-A6BF-01A-11R-A30C-07 USP15~RP11-296O14.3 fusion "USP15," "RP11-296O14.3," chr12~chr1 62749256 173395311 3 +- 0.636514 3 3 0 3 330 TCGA-Z4-A8JB-01A-23R-A37L-07 AEBP1~COL1A1 fusion "AEBP1," "COL1A1," chr7~chr17 44153671 48264124 2 +- 0.693147 1 0 1 1 6 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~ACTG1 fusion "COL1A1," "ACTG1," chr17~chr17 48265465 79478970 2 -- 0.693147 2 1 1 2 4 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271366 94029527 2 -+ 0.693147 2 2 0 2 98 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273516 94029544 2 -+ 0.693147 1 0 1 1 178 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267220 94034985 6 -+ 1.329661 5 2 3 5 368 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273675 94034985 2 -+ 0.693147 1 1 0 1 134 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48274541 94034985 3 -+ 1.098612 3 3 0 3 58 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266740 94035596 4 -+ 0.562335 2 2 0 2 904 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273675 94037648 6 -+ 1.242453 5 4 1 5 194 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48270158 94038082 55 -+ 0.271612 9 4 5 9 2292 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266738 94038082 4 -+ 1.386294 3 2 1 3 344 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48268178 94038634 8 -+ 1.386294 7 7 0 7 190 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271493 94038669 14 -+ 1.970181 5 4 1 5 162 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271304 94039035 4 -+ 0.693147 4 0 4 4 206 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48276641 94039038 5 -+ 1.332179 3 1 2 3 20 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48268804 94039092 2 -+ 0.693147 2 1 1 2 340 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273978 94039554 10 -+ 0.325083 9 9 0 9 110 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264104 94039561 2 -+ 0.693147 2 2 0 2 180 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266326 94039751 4 -+ 1.386294 3 3 0 3 652 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267057 94039751 4 -+ 1.039721 3 3 0 3 296 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264862 94039751 2 -+ 0.693147 2 2 0 2 454 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48268213 94039751 4 -+ 1.386294 4 3 1 4 342 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48275093 94039795 3 -+ 0.636514 3 2 1 3 56 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266815 94040408 4 -+ 1.386294 3 2 1 3 406 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48268744 94040422 2 -+ 0.693147 1 0 1 1 320 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271493 94040447 3 -+ 1.098612 2 2 0 2 90 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272410 94041957 6 -+ 1.56071 2 1 1 2 520 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266738 94042395 6 -+ 1.56071 4 3 1 4 2214 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94042395 18 -+ 2.370135 12 6 6 12 2518 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273978 94042395 3 -+ 1.098612 1 1 0 1 64 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48269149 94042395 3 -+ 1.098612 3 3 0 3 1120 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48270358 94042401 2 -+ 0.693147 1 0 1 1 1068 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264393 94042423 2 -+ 0.693147 2 1 1 2 3202 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266540 94043541 4 -+ 1.039721 4 4 0 4 1130 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267051 94043541 2 -+ 0.693147 2 2 0 2 1400 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266746 94043553 6 -+ 0.867563 3 3 0 3 1166 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48275119 94043553 2 -+ 0.693147 2 1 1 2 56 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266791 94045736 2 -+ 0.693147 2 0 2 2 1882 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94047036 8 -+ 0.37677 7 7 0 7 1262 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273284 94047036 4 -+ 1.386294 3 1 2 3 522 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272082 94047811 2 -+ 0.693147 1 0 1 1 880 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267912 94048829 2 -+ 0.693147 1 1 0 1 608 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48268744 94049703 3 -+ 1.098612 3 2 1 3 688 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266103 94049703 2 -+ 0.693147 2 1 1 2 1718 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267220 94049703 4 -+ 1.386294 3 2 1 3 2072 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48270358 94049718 2 -+ 0.693147 1 0 1 1 1044 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48269160 94049869 2 -+ 0.693147 1 0 1 1 858 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48270158 94050321 7 -+ 0.796312 6 2 4 6 1906 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48273675 94050321 2 -+ 0.693147 2 2 0 2 172 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264376 94050330 5 -+ 1.332179 3 2 1 3 1868 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271491 94050330 7 -+ 1.94591 3 1 2 3 292 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264845 94050330 3 -+ 0.636514 3 3 0 3 1280 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267040 94052269 4 -+ 1.386294 2 2 0 2 658 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48261982 94052369 0 -+ 0.693147 2 0 0 2 6 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48265953 94052369 3 -+ 1.098612 3 3 0 3 462 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266809 94052369 10 -+ 1.643418 10 8 2 10 574 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271934 94052404 5 -+ 1.609438 4 3 1 4 448 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48275794 94052404 3 -+ 1.098612 2 2 0 2 60 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266335 94053721 4 -+ 1.039721 3 3 0 3 1748 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272593 94054429 278 -+ 0.366186 18 16 2 18 304 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266529 94054429 13 -+ 1.711845 9 8 1 9 1148 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266791 94054950 3 -+ 1.098612 3 2 1 3 1474 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48267397 94054950 2 -+ 0.693147 2 2 0 2 776 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48265953 94055108 4 -+ 1.386294 2 1 1 2 426 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48268243 94055150 2 -+ 0.693147 2 1 1 2 636 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48265891 94055310 16 -+ 1.927392 12 8 4 12 500 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271304 94055762 8 -+ 1.667462 7 6 1 7 124 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48272410 94055769 2 -+ 0.693147 1 1 0 1 130 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266546 94055790 8 -+ 1.386294 5 5 0 5 738 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48265953 94056339 3 -+ 1.098612 2 0 2 2 300 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48266281 94056339 2 -+ 0.693147 2 1 1 2 820 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48264001 94057605 4 -+ 1.386294 3 1 2 3 248 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48263329 94058553 4 -+ 1.386294 4 2 2 4 334 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48271778 94058563 2 -+ 0.693147 2 2 0 2 22 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48263319 94058563 3 -+ 0.636514 3 3 0 3 358 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL1A2 fusion "COL1A1," "COL1A2," chr17~chr7 48262950 94059619 4 -+ 0.562335 3 3 0 3 78 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48273675 189856910 6 -+ 1.56071 3 1 2 3 166 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48273284 189858087 3 -+ 1.098612 3 1 2 3 194 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272795 189858123 4 -+ 1.039721 4 4 0 4 138 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48275794 189858960 2 -+ 0.693147 2 0 2 2 22 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48271934 189858960 5 -+ 0.500402 4 4 0 4 150 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266738 189859032 9 -+ 1.21489 9 7 2 9 510 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48273675 189859032 2 -+ 0.693147 1 0 1 1 68 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48273978 189859267 11 -+ 0.885574 10 10 0 10 196 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272966 189859274 3 -+ 1.098612 2 0 2 2 146 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48270381 189859469 2 -+ 0.693147 2 2 0 2 358 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265237 189860418 2 -+ 0.693147 2 2 0 2 280 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265891 189860418 9 -+ 1.735126 8 8 0 8 116 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48271934 189860418 2 -+ 0.693147 2 0 2 2 42 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48271312 189860464 5 -+ 1.332179 4 2 2 4 166 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48267220 189861891 5 -+ 1.609438 5 1 4 5 156 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266738 189861891 21 -+ 1.59044 7 3 4 7 108 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272795 189861891 2 -+ 0.693147 2 1 1 2 144 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48275119 189862062 2 -+ 0.693147 2 2 0 2 26 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48274371 189862062 2 -+ 0.693147 2 1 1 2 36 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268276 189863008 9 -+ 1.735126 9 5 4 9 390 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48269862 189863020 2 -+ 0.693147 2 1 1 2 368 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48262920 189864017 2 -+ 0.693147 2 2 0 2 66 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266329 189864081 7 -+ 0.410116 7 7 0 7 1006 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48267220 189864196 4 -+ 1.386294 2 1 1 2 454 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268744 189864196 2 -+ 0.693147 1 0 1 1 138 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268178 189864568 5 -+ 1.609438 5 0 5 5 756 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266755 189864587 3 -+ 1.098612 3 3 0 3 430 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268178 189866262 3 -+ 1.098612 2 1 1 2 544 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272972 189867034 2 -+ 0.693147 2 0 2 2 308 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48269862 189867052 2 -+ 0.693147 2 1 1 2 172 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48275522 189867681 6 -+ 1.242453 3 0 3 3 46 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48272593 189867690 10 -+ 1.695743 5 3 2 5 218 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266529 189867690 6 -+ 1.791759 4 4 0 4 728 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265891 189868137 2 -+ 0.693147 2 2 0 2 330 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48270158 189868137 916 -+ 0.342559 76 3 73 76 948 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266738 189868137 32 -+ 1.501784 27 6 21 27 484 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48264393 189868817 2 -+ 0.693147 2 2 0 2 158 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268178 189870076 19 -+ 1.440701 17 11 6 17 132 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48270001 189870139 2 -+ 0.693147 2 2 0 2 256 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48266103 189871071 8 -+ 1.559581 7 5 2 7 354 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48265237 189871089 10 -+ 1.504788 4 3 1 4 390 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48268752 189872263 2 -+ 0.693147 2 1 1 2 38 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48263343 189873660 2 -+ 0.693147 1 1 0 1 124 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL3A1 fusion "COL1A1," "COL3A1," chr17~chr2 48263229 189875527 3 -+ 1.098612 3 2 1 3 110 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL5A1 fusion "COL1A1," "COL5A1," chr17~chr9 48266529 137703338 2 -+ 0.693147 2 1 1 2 14 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL5A1 fusion "COL1A1," "COL5A1," chr17~chr9 48276917 137706643 3 -+ 1.098612 3 3 0 3 4 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL5A1 fusion "COL1A1," "COL5A1," chr17~chr9 48266529 137707817 6 -+ 0.867563 6 5 1 6 8 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL5A1 fusion "COL1A1," "COL5A1," chr17~chr9 48275794 137710846 3 -+ 1.098612 2 2 0 2 2 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL6A1 fusion "COL1A1," "COL6A1," chr17~chr21 48273978 47417335 9 -+ 0.683739 9 9 0 9 4 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL6A1 fusion "COL1A1," "COL6A1," chr17~chr21 48270166 47422181 2 -+ 0.693147 1 1 0 1 4 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL6A1 fusion "COL1A1," "COL6A1," chr17~chr21 48266827 47422181 2 -+ 0.693147 1 0 1 1 26 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL6A2 fusion "COL1A1," "COL6A2," chr17~chr21 48272410 47535820 3 -+ 1.098612 2 1 1 2 14 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL6A2 fusion "COL1A1," "COL6A2," chr17~chr21 48270001 47537350 9 -+ 1.83102 5 5 0 5 18 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A1~COL6A2 fusion "COL1A1," "COL6A2," chr17~chr21 48273986 47539747 3 -+ 1.098612 1 0 1 1 8 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94057789 48263381 2 +- 0.693147 2 1 1 2 144 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94055789 48264067 2 +- 0.693147 2 0 2 2 70 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94038679 48265334 3 +- 1.098612 3 0 3 3 134 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049598 48265998 2 +- 0.693147 2 0 2 2 232 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049918 48266156 2 +- 0.693147 2 1 1 2 590 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94052404 48266352 5 +- 1.609438 3 0 3 3 230 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047143 48266371 5 +- 1.332179 5 1 4 5 182 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94045815 48266371 7 +- 0.796312 6 1 5 6 220 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94051264 48266371 3 +- 1.098612 2 0 2 2 478 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94053755 48266371 6 +- 1.791759 6 2 4 6 290 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94053738 48266608 2 +- 0.693147 1 0 1 1 418 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047864 48266636 4 +- 1.386294 2 0 2 2 290 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48266636 26 +- 1.81705 15 6 9 15 690 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94041994 48266636 2 +- 0.693147 2 1 1 2 130 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94052404 48266763 2 +- 0.693147 2 0 2 2 1304 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94052323 48266844 6 +- 1.56071 6 1 5 6 1986 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94053720 48270037 2 +- 0.693147 2 0 2 2 1376 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94056607 48270054 18 +- 1.406678 14 13 1 14 384 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94034058 48270054 2 +- 0.693147 2 0 2 2 186 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94037692 48270054 10 +- 1.418484 4 2 2 4 288 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94054975 48270408 14 +- 0.754997 14 1 13 14 1648 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94038920 48270408 2 +- 0.693147 2 1 1 2 256 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94050374 48271544 9 +- 0.348832 9 1 8 9 1020 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94047143 48271987 3 +- 1.098612 2 1 1 2 552 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94054958 48272125 2 +- 0.693147 2 0 2 2 1180 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94035615 48272461 7 +- 0.995027 7 2 3 7 406 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94045815 48272461 3 +- 1.098612 2 2 0 2 420 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94056607 48272839 4 +- 1.039721 4 3 1 4 2112 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94054536 48272839 2 +- 0.693147 1 0 1 1 408 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94039098 48272989 2 +- 0.693147 1 0 1 1 234 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94053755 48273026 2 +- 0.693147 1 0 1 1 1182 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94038732 48273026 3 +- 1.098612 2 1 1 2 118 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94037548 48273560 6 +- 1.791759 4 1 3 4 200 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94049756 48273560 21 +- 1.706771 18 2 16 18 1888 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94034564 48273560 3 +- 1.098612 3 0 3 3 98 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94038135 48273889 3 +- 1.098612 3 0 3 3 362 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94053755 48273889 4 +- 1.039721 3 0 3 3 726 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94056373 48273889 6 +- 1.56071 2 1 1 2 826 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94034564 48274424 3 +- 1.098612 3 0 3 3 96 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94038118 48275118 3 +- 1.098612 3 1 2 3 240 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL1A1 fusion "COL1A2," "COL1A1," chr7~chr17 94052377 48275118 2 +- 0.693147 1 0 1 1 432 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94047143 189855757 6 ++ 1.56071 5 3 2 5 108 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94039133 189859267 10 ++ 0.639032 9 0 9 9 38 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94047059 189859267 2 ++ 0.693147 1 1 0 1 24 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94038912 189859478 2 ++ 0.693147 2 1 1 2 10 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94047143 189859772 2 ++ 0.693147 2 1 1 2 64 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94043587 189859772 5 ++ 1.332179 3 0 3 3 42 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94047864 189861891 7 ++ 1.153742 5 1 4 5 78 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94053755 189864568 2 ++ 0.693147 2 0 2 2 84 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94049598 189867024 5 ++ 1.332179 3 0 3 3 198 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94055169 189868137 3 ++ 1.098612 3 0 3 3 48 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94049756 189868137 3 ++ 0.636514 2 0 2 2 126 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94047108 189868817 2 ++ 0.693147 2 0 2 2 24 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94049581 189869056 3 ++ 1.098612 3 2 1 3 110 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL3A1 fusion "COL1A2," "COL3A1," chr7~chr2 94049598 189871071 2 ++ 0.693147 2 0 2 2 44 TCGA-Z4-A8JB-01A-23R-A37L-07 COL1A2~COL6A1 fusion "COL1A2," "COL6A1," chr7~chr21 94047143 47411924 6 ++ 1.011404 6 1 5 6 8 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189860516 48262186 2 +- 0.693147 2 0 2 2 6 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189875616 48263009 3 +- 1.098612 3 1 2 3 66 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189872815 48263333 2 +- 0.693147 2 1 1 2 26 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189867788 48264483 2 +- 0.693147 1 0 1 1 106 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189864092 48264879 2 +- 0.693147 1 0 1 1 34 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870985 48265281 2 +- 0.693147 2 2 0 2 136 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189869090 48265317 8 +- 0.37677 8 1 7 8 94 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870985 48265911 2 +- 0.693147 1 0 1 1 146 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870985 48265998 7 +- 1.747868 4 0 4 4 176 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189861222 48266636 3 +- 1.098612 1 1 0 1 102 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870977 48266853 3 +- 1.098612 2 1 1 2 258 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870985 48267957 5 +- 1.332179 4 1 3 4 138 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189861178 48269183 2 +- 0.693147 2 1 1 2 56 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189858808 48270054 6 +- 1.242453 3 1 2 3 130 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189859825 48270211 3 +- 1.098612 3 1 2 3 364 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189863444 48270393 3 +- 1.098612 3 2 1 3 196 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189858808 48271402 4 +- 1.386294 4 0 4 4 96 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189861222 48272691 2 +- 0.693147 2 1 1 2 36 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189866176 48273026 4 +- 1.386294 2 2 0 2 650 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189861222 48273560 2 +- 0.693147 2 1 1 2 200 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870985 48273889 5 +- 0.950271 5 2 3 5 738 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189855086 48274031 5 +- 1.609438 3 2 1 3 16 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189870985 48274424 3 +- 1.098612 3 1 2 3 426 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189864083 48275344 3 +- 1.098612 1 1 0 1 238 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189867077 48275363 4 +- 1.039721 3 2 1 3 118 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A1 fusion "COL3A1," "COL1A1," chr2~chr17 189858808 48275566 3 +- 1.098612 2 0 2 2 176 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189870985 94034985 2 ++ 0.693147 1 1 0 1 22 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189859058 94039554 7 ++ 0.796312 7 6 1 7 44 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189858177 94039751 2 ++ 0.693147 2 2 0 2 22 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189871708 94039751 5 ++ 1.609438 5 2 3 5 74 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189861222 94043002 2 ++ 0.693147 2 2 0 2 22 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189864586 94043012 3 ++ 0.636514 3 3 0 3 86 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189859557 94044538 394 ++ 0.756265 382 0 382 382 140 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189867077 94048810 2 ++ 0.693147 2 1 1 2 200 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189858123 94048829 2 ++ 0.693147 1 1 0 1 28 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189868190 94049853 8 ++ 1.732868 4 4 0 4 126 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189861222 94049853 6 ++ 0.867563 4 4 0 4 42 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189867788 94053648 3 ++ 1.098612 2 1 1 2 92 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189867735 94053721 2 ++ 0.693147 1 0 1 1 104 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189864303 94054429 5 ++ 1.332179 2 2 0 2 50 TCGA-Z4-A8JB-01A-23R-A37L-07 COL3A1~COL1A2 fusion "COL3A1," "COL1A2," chr2~chr7 189853369 94055735 4 ++ 1.039721 3 2 1 3 6 TCGA-Z4-A8JB-01A-23R-A37L-07 COL5A1~COL1A1 fusion "COL5A1," "COL1A1," chr9~chr17 137715315 48271402 5 +- 1.332179 1 0 1 1 4 TCGA-Z4-A8JB-01A-23R-A37L-07 COL5A2~COL1A1 fusion "COL5A2," "COL1A1," chr2~chr17 189922046 48268752 7 -- 1.549826 4 0 4 4 10 TCGA-Z4-A8JB-01A-23R-A37L-07 COL6A1~COL1A2 fusion "COL6A1," "COL1A2," chr21~chr7 47418044 94055062 4 ++ 1.039721 3 2 1 3 6 TCGA-Z4-A8JB-01A-23R-A37L-07 COL6A2~COL1A2 fusion "COL6A2," "COL1A2," chr21~chr7 47544627 94055762 2 ++ 0.693147 2 2 0 2 12 TCGA-Z4-A8JB-01A-23R-A37L-07 HN1~Nchr2~174296244 intergenic "HN1," "-," chr17~chr2 73143651 174296244 13 -- 1.204793 3 3 0 3 2 TCGA-Z4-A8JB-01A-23R-A37L-07 MMP14~COL1A1 fusion "MMP14," "COL1A1," chr14~chr17 23316504 48266763 2 +- 0.693147 1 1 0 1 4 TCGA-Z4-A8JB-01A-23R-A37L-07 Nchr11~85646957~SLC25A1 intergenic "-," "SLC25A1," chr11~chr22 85646957 19163403 18 -+ 2.187033 8 0 8 8 4 TCGA-Z4-A8JB-01A-23R-A37L-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85667520 3 ++ 1.098612 2 0 2 2 8 TCGA-Z4-A8JB-01A-23R-A37L-07 Nchr16~85391249~KIAA0182 intergenic "-," "KIAA0182," chr16~chr16 85391249 85682158 6 ++ 1.56071 5 4 1 5 4 TCGA-Z4-A8JB-01A-23R-A37L-07 Nchr1~143743240~PDE4DIP intergenic "-," "PDE4DIP," chr1~chr1 143743240 145004783 7 -+ 1.747868 6 3 3 6 60 TCGA-Z4-A8JB-01A-23R-A37L-07 NchrX~36982319~NchrX~36698022 intergenic "-," "-," chrX~chrX 36982319 36698022 3 -- 1.098612 1 0 1 1 2 TCGA-Z4-A8JB-01A-23R-A37L-07 NchrX~8196446~NchrX~8407869 intergenic "-," "-," chrX~chrX 8196446 8407869 3 ++ 1.098612 3 1 2 3 2 TCGA-Z4-A8JB-01A-23R-A37L-07 RP1-34H18.1~NAV3 fusion "RP1-34H18.1," "NAV3," chr12~chr12 77966046 78334099 2 ++ 0.693147 2 1 1 2 8 TCGA-Z4-A8JB-01A-23R-A37L-07 SPARC~COL1A1 fusion "SPARC," "COL1A1," chr5~chr17 151042331 48266594 2 -- 0.693147 1 1 0 1 4 TCGA-Z4-A8JB-01A-23R-A37L-07 VIM~COL1A2 fusion "VIM," "COL1A2," chr10~chr7 17271432 94029518 2 ++ 0.693147 2 0 2 2 2