Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2	centerN
PTCHD2	57540	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	11561526	11561526	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTCHD2-209	NM_020780	exon2	c.G477A	p.L159L	GCAGCTGCATCTC	.	22	8	38	0	.	0	0	0	0	0	3
VPS13D	55187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12309384	12309384	+	Silent	SNP	T	T	G	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VPS13D-95	NM_015378	exon6	c.T552G	p.A184A	AAATGCTGTGAAT	.	127	48	65	0	.	0	0	0	0	0	5
PHC2	1912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	33820015	33820015	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHC2-227	NM_198040	exon8	c.G1542A	p.P514P	TGGGGACGGCTGG	.	123	55	81	0	.	1	1	0	0	0	5
LCE1B	353132	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	152785074	152785097	+	In_Frame_Del	DEL	GCTGTGGCTCCAGCTCTGGGGGAA	GCTGTGGCTCCAGCTCTGGGGGAA	-	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	GCTGTGGCTCCAGCTCTGGGGGAA	GCTGTGGCTCCAGCTCTGGGGGAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LCE1B-68	NM_178349	exon1	c.152_175del	p.51_59del	GAGGCTGCTGTGG	.	105	22	105	0	.	0	0	0	0	0	3
OPN4	94233	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	88419681	88419681	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OPN4-69	NM_001030015	exon7	c.G863A	p.G288D	GCAAGGGCAATGG	.	174	12	163	0	.	0	0	0	0	0	3
DNAJC4	3338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	64001585	64001585	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAJC4-226	NM_005528	exon7	c.G655T	p.G219W	CGGCTAGGGCAGC	.	54	7	60	0	.	151	125	26	0	0	3
KLRB1	3820	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	9760409	9760409	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLRB1-90	NM_002258	exon1	c.G27C	p.E9D	GTTTAACTCAGCA	.	312	127	214	1	.	0	0	0	0	0	4
SALL2	6297	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21991730	21991730	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SALL2-92	NM_005407	exon2	c.G2132A	p.R711Q	TGCATCCGGACAT	.	114	53	90	1	.	0	0	0	0	0	4
C15orf27	123591	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	76467904	76467904	+	Nonsense_Mutation	DEL	C	C	-	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C15orf27-90	NM_152335	exon8	c.657delC	p.Y219X	AGCCTACGTCCTG	.	192	76	170	0	.	0	0	0	0	0	3
KLHDC4	54758	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	87742934	87742934	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLHDC4-182	NM_017566	exon10	c.G1384A	p.D462N	GCAGGTCGCTGAG	.	201	53	127	1	.	65	49	16	0	0	4
SCARF1	8578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	1543262	1543262	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCARF1-91	NM_145350	exon6	c.G1083A	p.G361G	ACAGGACCCCTGA	.	195	64	133	0	.	1	1	0	0	0	5
NOL11	25926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65734087	65734087	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOL11-90	NM_015462	exon13	c.A1528C	p.S510R	TTCTTGAGGTAAG	.	58	26	52	0	.	1	0	1	0	0	5
LAMA3	3909	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21461949	21461949	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LAMA3-100	NM_001127717	exon40	c.G5162A	p.G1721D	AGGAGGGCTACTA	.	189	82	142	0	.	0	0	0	0	0	4
WDR7	23335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	54348602	54348602	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDR7-93	NM_052834	exon4	c.T325C	p.C109R	TTAGCTTGCACAC	.	196	49	156	0	.	1	1	0	0	0	5
THOP1	7064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2790453	2790453	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	THOP1-92	NM_003249	exon2	c.G51A	p.P17P	ATCTCCGTGCTCT	.	93	50	100	0	.	1	0	1	0	0	5
ANKRD24	170961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4210319	4210319	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD24-68	NM_133475	exon13	c.C1009T	p.L337L	CGCCTCCTGCAGA	.	411	171	426	0	.	1	1	0	0	0	5
LYPD3	27076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43968541	43968541	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LYPD3-91	NM_014400	exon2	c.G147T	p.M49I	TGTCTTCATCTTG	.	207	29	99	0	.	0	0	0	0	0	5
LYPD3	27076	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43968550	43968550	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LYPD3-91	NM_014400	exon2	c.G138A	p.P46P	CTTGTTCGGGGAG	.	219	29	112	1	.	0	0	0	0	0	4
DNMT3A	1788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	25505395	25505395	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNMT3A-1924	NM_175630	exon4	c.A363T	p.A121A	CTCAGCTGCACCC	.	61	27	71	0	.	2	1	1	0	0	5
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179501161	179501161	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_001267550	exon225	c.A41293G	p.K13765E	TTTCTTTGTTTCC	.	105	49	112	0	.	0	0	0	0	0	5
TMEM40	55287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	12779634	12779634	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM40-90	NM_018306	exon8	c.424+1G>C	.	TATTTACCACTTG	.	147	60	127	0	.	0	0	0	0	0	4
TRAK1	22906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42265106	42265106	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRAK1-91	NM_001042646	exon16	c.C2739T	p.G913G	TAGTGGCATCCGG	.	161	72	188	0	.	9	4	5	0	0	5
SCFD2	152579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	54231383	54231383	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCFD2-93	NM_152540	exon1	c.A726C	p.L242F	CTGACTTAAGGAA	.	159	76	144	0	.	5	3	2	0	0	5
FRAS1	80144	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79399070	79399070	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FRAS1-68	NM_025074	exon55	c.G7953A	p.M2651I	CAGCATGCCAGCT	.	267	113	241	2	.	0	0	0	0	0	4
TACR3	6870	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	104640739	104640739	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TACR3-525	NM_001059	exon1	c.94delG	p.A32fs	TGGCCGCCCCGGC	.	40	14	88	0	.	0	0	0	0	0	3
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	114277261	114277261	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANK2-583	NM_001148	exon38	c.C7487G	p.T2496R	CCAAAACAGAACT	.	75	28	70	0	.	0	0	0	0	0	5
TRAM1L1	133022	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	118006510	118006519	+	Frame_Shift_Del	DEL	GAACGGGGGG	GAACGGGGGG	-	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	GAACGGGGGG	GAACGGGGGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRAM1L1-90	NM_152402	exon1	c.31_40del	p.11_14del	GGCTGAGAACGGG	.	109	29	108	0	.	0	0	0	0	0	3
KLHL3	26249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	136973018	136973018	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLHL3-90	NM_017415	exon11	c.C1286T	p.T429M	CGCCGCGTGTTCA	.	178	82	142	0	.	0	0	0	0	0	5
GABRA1	2554	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	161300197	161300197	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GABRA1-93	NM_001127644	exon5	c.C330T	p.V110V	GACAGTCCTCCGG	.	72	8	90	0	.	0	0	0	0	0	3
HIST1H3B	8358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26031919	26031919	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIST1H3B-92	NM_003537	exon1	c.G370C	p.D124H	GGATGTCTTTGGG	.	128	51	111	0	.	0	0	0	0	0	5
MICA	100507436	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31378525	31378525	+	Silent	SNP	C	C	T	rs17206561	byfrequency	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001177519	exon2	c.C276T	p.N92N	AGGGAACGGAAAG	.	232	108	196	1	C|0.765;T|0.235	25	16	9	0	0	3
DDO	8528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	110714258	110714258	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DDO-155	NM_003649	exon5	c.A830C	p.E277A	CTATTTTCTGCAT	.	100	50	98	0	.	13	8	5	0	0	5
RBM28	55131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127954955	127954955	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBM28-92	NM_018077	exon17	c.C1907T	p.P636L	TGCTCTGGGGGCA	.	178	63	153	0	.	15	10	5	0	0	5
KCNH2	3757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150647026	150647026	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNH2-94	NM_172056	exon9	c.G2628C	p.R876S	GCGGATCCTGAAG	.	107	34	152	0	.	23	9	14	0	0	5
NTMT1	28989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	132395087	132395087	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_014064	exon2	c.C105T	p.G35G	GTATGGCCACATC	.	175	71	178	0	.	99	65	34	0	0	5
BEX5	340542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101409174	101409174	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BEX5-86	NM_001012978	exon3	c.G64A	p.A22T	CTAAAGCGGGGGC	.	31	27	52	0	.	7	7	0	0	0	5
F8	2157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	154157135	154157135	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	F8-182	NM_000132	exon14	c.A4930G	p.T1644A	CCCAGGTGACTTC	.	55	5	66	0	.	0	0	0	0	0	3
SNAPC4	6621	broad.mit.edu;bcgsc.ca	37	9	139272547	139272547	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SNAPC4-90	NM_003086	exon21	c.G3732A	p.Q1244Q	CCCAGGCTGGCGC	.	19	5	36	0	.	9	6	3	0	0	2
PTCHD2	57540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11561189	11561189	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTCHD2-209	NM_020780	exon2	c.G140A	p.R47Q	GCTGGCGGCACTG	.	64	57	51	0	.	2	0	2	0	0	5
MRPL37	51253	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	54678298	54678298	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MRPL37-90	NM_016491	exon5	c.C957T	p.G319G	TTTTGGCAGTGCC	.	91	78	95	0	.	45	5	40	0	0	4
IGSF3	3321	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	117150771	117150771	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGSF3-92	NM_001007237	exon5	c.G1015A	p.E339K	CAAATTCGCTGTT	.	162	120	186	0	.	3	0	3	0	0	4
NEK2	4751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	211846871	211846871	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NEK2-765	NM_001204183	exon3	c.C509T	p.T170M	AAACTCGTGTCAT	.	205	43	154	0	.	0	0	0	0	0	5
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	12301919	12301919	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRP6-661	NM_002336	exon14	c.G3163A	p.E1055K	CCTGCTCGCCTTT	.	205	12	150	0	.	12	11	1	0	0	3
KIF5A	3798	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57957244	57957244	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF5A-517	NM_004984	exon2	c.G152A	p.R51H	TTGACCGTGTATT	.	256	32	170	1	.	0	0	0	0	0	3
BBS10	79738	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	76741456	76741459	+	Frame_Shift_Del	DEL	TCTG	TCTG	-	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	TCTG	TCTG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BBS10-92	NM_024685	exon2	c.306_309del	p.102_103del	CTTTTCTCTGTCT	.	110	48	58	0	.	0	0	0	0	0	3
SUGT1	10910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	53237236	53237236	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SUGT1-226	NM_001130912	exon8	c.G484T	p.E162X	GGCTCAGAATCTG	.	45	13	54	0	.	0	0	0	0	0	5
HECTD1	25831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	31598273	31598273	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HECTD1-570	NM_015382	exon25	c.T4304A	p.V1435D	TGAGGGACGTTTT	.	217	167	261	1	.	22	5	17	0	0	5
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	63017231	63017231	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TLN2-573	NM_015059	exon24	c.G3183A	p.T1061T	GCAGACGCTTAAG	.	43	7	45	0	.	3	3	0	0	0	4
ANKS3	124401	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4747041	4747041	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKS3-90	NM_133450	exon17	c.G1959C	p.W653C	CTCCCGCCACTTC	.	69	48	96	1	.	12	1	11	0	0	4
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7578415	7578428	+	Frame_Shift_Del	DEL	ACCTCCGTCATGTG	ACCTCCGTCATGTG	-	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	ACCTCCGTCATGTG	ACCTCCGTCATGTG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TP53-70225	NM_000546	exon5	c.502_515del	p.168_172del	CTCACAACCTCCG	.	55	26	111	0	.	0	0	0	0	0	3
ZNF230	7773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	44515611	44515611	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF230-90	NM_006300	exon5	c.A1420T	p.M474L	AATGATATGTAAG	.	18	6	15	0	.	4	4	0	0	0	3
IZUMO1	284359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49245556	49245556	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IZUMO1-91	NM_182575	exon7	c.G510A	p.V170V	AACTTCCACATTC	.	94	75	99	0	.	5	0	5	0	0	4
LRP1B	53353	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141298589	141298589	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRP1B-311	NM_018557	exon45	c.G7466T	p.C2489F	CAGGAACAATTCA	.	77	62	115	2	.	0	0	0	0	0	4
AGXT	189	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241812461	241812461	+	Missense_Mutation	SNP	G	G	A	rs34664134	byfrequency	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AGXT-90	NM_000030	exon5	c.G590A	p.R197Q	TGGACCGGCAAGG	.	45	37	72	0	G|0.993;A|0.007	0	0	0	0	0	4
COL9A3	1299	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	61470085	61470085	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL9A3-514	NM_001853	exon31	c.C1836T	p.D612D	GCTGGACGGGCCT	.	325	13	205	0	.	20	17	3	0	0	3
RTEL1	51750	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62303930	62303930	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RTEL1-44	NM_032957	exon9	c.G793T	p.D265Y	AACATTGACCTGA	.	143	36	107	1	.	18	12	6	0	0	4
UPK3A	7380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45691450	45691450	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UPK3A-90	NM_006953	exon6	c.G714A	p.G238G	CATGGGGAGTTCT	.	55	45	73	0	.	0	0	0	0	0	5
CDCP1	64866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45135039	45135039	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDCP1-117	NM_022842	exon6	c.C1357T	p.P453S	CCTTGGGCACCAG	.	146	69	94	0	.	0	0	0	0	0	5
CNTN3	5067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	74316498	74316498	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTN3-137	NM_020872	exon20	c.G2736T	p.W912C	GGCATTCCAAACA	.	137	23	94	0	.	0	0	0	0	0	5
PARP14	54625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	122418659	122418659	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PARP14-525	NM_017554	exon6	c.G1258A	p.D420N	AAAGATGACAGGA	.	176	28	88	0	.	4	3	1	0	0	5
CLDN1	9076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	190030751	190030751	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLDN1-91	NM_021101	exon2	c.G298A	p.V100I	TGCCAACGGTGGC	.	235	44	176	0	.	181	160	21	0	0	5
PAPD7	11044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	6753081	6753081	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAPD7-69	NM_001171805	exon12	c.C1365T	p.H455H	CGTCCACCACATG	.	99	81	110	0	.	19	1	18	0	0	5
HIVEP2	3097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	143095218	143095218	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIVEP2-95	NM_006734	exon5	c.A658G	p.I220V	AAGGTATACATGG	.	118	82	139	0	.	1	0	1	0	0	5
SEMA3E	9723	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	83032010	83032010	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEMA3E-93	NM_012431	exon10	c.G1081A	p.E361K	GTCCTTCCTTATG	.	169	25	117	1	.	0	0	0	0	0	3
RELN	5649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	103276868	103276868	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RELN-574	NM_173054	exon18	c.C2117T	p.T706I	GGGAATGTCTGGG	.	276	45	219	0	.	0	0	0	0	0	5
DLGAP2	9228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	1645390	1645390	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DLGAP2-22	NM_004745	exon11	c.C2634T	p.D878D	TGAGGACGTCAGC	.	107	92	152	0	.	0	0	0	0	0	5
FAM9A	171482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	8763159	8763159	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM9A-130	NM_174951	exon7	c.A791T	p.E264V	TCTTCCTCTTCTT	.	48	7	84	0	.	0	0	0	0	0	4
TGIF2LX	90316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	89177681	89177681	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TGIF2LX-92	NM_138960	exon2	c.C597A	p.S199S	CACATCCCCGTCT	.	348	132	354	0	.	0	0	0	0	0	5
TENM1	10178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	123787622	123787622	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001163278	exon7	c.G1180T	p.G394X	CCCGTCCCTTCTG	.	74	33	111	0	.	0	0	0	0	0	5
FLNA	2316	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153577797	153577797	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FLNA-599	NM_001110556	exon47	c.G7689T	p.K2563N	CAGGCCCTTGGCC	.	102	39	129	1	.	102	102	0	0	0	4
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	41266091	41266092	+	Nonsense_Mutation	INS	-	-	A	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTNNB1-24361	NM_001098210	exon3	c.88_89insA	p.Y30_L31delinsX	CAGTCTTACCTGG	.	258	119	170	0	.	0	0	0	0	0	3
ND5	0	broad.mit.edu	37	MT	13480	13480	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361567	exon1	c.G1144A	p.G382R	TTAGCAGGAATAC	.	62	8	21	0	.	7208	6154	1051	0	3	1
DVL1	1855	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	1273448	1273448	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DVL1-658	NM_004421	exon14	c.G1548A	p.Q516Q	CGGGTACTGGTAG	.	31	28	21	0	.	52	0	52	0	0	4
PDE4DIP	9659	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	145075687	145075687	+	Missense_Mutation	SNP	C	C	G	rs78401481	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDE4DIP-663	NM_022359	exon1	c.G176C	p.S59T	GCCCAGCTCCCGG	.	115	20	16	0	C|0.989;G|0.011	0	0	0	0	0	3
RBM20	282996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	112540915	112540915	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001134363	exon2	c.C548T	p.S183F	GACCCTCCATGAA	.	74	61	98	0	.	0	0	0	0	0	5
CNTN5	53942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	100095508	100095508	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTN5-366	NM_001243270	exon15	c.G1969T	p.D657Y	ACAGCAGACAGTG	.	131	119	145	0	.	0	0	0	0	0	5
PPFIA2	8499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	81777846	81777846	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPFIA2-231	NM_001220476	exon8	c.A940G	p.K314E	CTGTTTTAATGAG	.	282	83	170	0	.	0	0	0	0	0	5
ADPRM	56985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10608472	10608472	+	Missense_Mutation	SNP	G	G	A	rs74947284	unknown	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_020233	exon2	c.G229A	p.D77N	ATCATCGATGGAT	.	127	113	166	0	G|0.999;A|0.001	6	1	5	0	0	5
ARID3A	1820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	932572	932572	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARID3A-90	NM_005224	exon3	c.C523G	p.R175G	TTCCCCCGAAAGG	.	105	35	12	0	.	1	1	0	0	0	5
GPR113	165082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	26537397	26537397	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR113-94	NM_001145168	exon7	c.T1017C	p.L339L	GTATGGAAGTCGA	.	317	276	380	2	.	0	0	0	0	0	4
IFNAR2	3455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	34634996	34634996	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IFNAR2-90	NM_000874	exon9	c.G971A	p.R324H	ACAAGCGTGCATC	.	27	13	38	0	.	2	1	1	0	0	4
PI4KA	5297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	21088807	21088807	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PI4KA-454	NM_058004	exon33	c.C3776T	p.T1259M	TCCACCGTCATGT	.	191	10	269	0	.	10	10	0	0	0	3
TLR9	54106	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52255624	52255624	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TLR9-587	NM_017442	exon2	c.C2708A	p.A903E	CGGAGTGCCCAGC	.	141	11	72	0	.	1	1	0	0	0	3
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13870993	13870993	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH5-182	NM_001369	exon24	c.C3717A	p.F1239L	CTTATTGAATTCT	.	177	77	117	0	.	0	0	0	0	0	5
PPWD1	23398	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	64878975	64878975	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPWD1-91	NM_015342	exon8	c.T1461A	p.P487P	AGGACCTAAACGA	.	178	92	140	0	.	16	9	7	0	0	4
PCDHA12	56137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140255099	140255099	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_018903	exon1	c.G42C	p.L14L	GCGTCTGCTGCTC	.	101	37	61	0	.	0	0	0	0	0	5
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51920393	51920393	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKHD1-603	NM_170724	exon19	c.T1828A	p.Y610N	GTGTATACTGATC	.	108	93	121	1	.	0	0	0	0	0	5
GPR174	84636	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	78426661	78426661	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR174-130	NM_032553	exon1	c.C157T	p.R53X	ACAAAACGAGCTG	.	104	86	91	1	.	0	0	0	0	0	4
ABCB9	23457	broad.mit.edu	37	12	123414623	123414623	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCB9-90	NM_019625	exon12	c.G2136T	p.V712V	GTCCAGCACCACA	.	219	9	57	1	.	15	13	2	0	0	1
SLC44A5	204962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	75684227	75684227	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC44A5-95	NM_001130058	exon17	c.C1477T	p.P493S	CATCAGGTTTTTT	.	171	50	177	0	.	0	0	0	0	0	5
DPYD	1806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	97564178	97564178	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DPYD-278	NM_000110	exon21	c.G2633A	p.S878N	CCAAAACTTGGCA	.	64	31	60	0	.	0	0	0	0	0	5
KCND3	3752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	112329612	112329612	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCND3-155	NM_004980	exon3	c.G1223A	p.R408Q	TAAATCCGGCTAA	.	203	44	157	0	.	0	0	0	0	0	5
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158641930	158641930	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPTA1-142	NM_003126	exon11	c.T1407C	p.H469H	CTGACGATGACGC	.	78	25	92	0	.	0	0	0	0	0	5
C1orf226	400793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	162353216	162353216	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C1orf226-1	NM_001135240	exon3	c.A691G	p.K231E	AGAGGCAAAGTTC	.	245	99	293	0	.	0	0	0	0	0	5
GPR161	23432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	168059902	168059902	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR161-90	NM_001267609	exon5	c.G1164C	p.L388L	CAGGCCCAGGTCT	.	69	28	79	0	.	0	0	0	0	0	5
CDC73	79577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	193111054	193111054	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDC73-1009	NM_024529	exon7	c.C587A	p.T196N	GATCTACTATCAA	.	213	80	337	0	.	0	0	0	0	0	5
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216062269	216062269	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USH2A-115	NM_206933	exon41	c.A7722G	p.L2574L	CAAGTATAGACGG	.	62	26	66	0	.	0	0	0	0	0	5
RET	5979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43606665	43606665	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RET-4507	NM_020630	exon7	c.T1274C	p.V425A	GGAAAGTCTGTGT	.	100	28	79	0	.	0	0	0	0	0	5
ZNF503	84858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	77160944	77160944	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF503-91	NM_032772	exon1	c.G234T	p.K78N	CAGCATCTTCAGC	.	42	12	53	0	.	0	0	0	0	0	5
PNLIPRP1	5407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118354303	118354303	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PNLIPRP1-154	NM_006229	exon5	c.C392A	p.A131D	CCCAAGCCACCTA	.	123	45	111	0	.	0	0	0	0	0	5
FANK1	92565	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127693588	127693588	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FANK1-91	NM_145235	exon7	c.G675A	p.V225V	CAGTGTGATTGAG	.	159	49	167	1	.	0	0	0	0	0	4
OR52N1	79473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5809714	5809714	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR52N1-69	NM_001001913	exon1	c.G333C	p.G111G	CTCCATCCCTGTG	.	79	57	197	0	.	0	0	0	0	0	5
EML3	256364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62376216	62376216	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EML3-91	NM_153265	exon8	c.G991A	p.D331N	TTCCATCCTTATC	.	359	69	233	0	.	0	0	0	0	0	5
CCDC88B	283234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64111938	64111938	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC88B-94	NM_032251	exon14	c.G1925C	p.R642T	GGTTGAGACAGGA	.	157	50	76	0	.	0	0	0	0	0	5
DPP3	10072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66272099	66272099	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DPP3-46	NM_130443	exon17	c.G1895A	p.G632E	CCACAGGGGATGT	.	52	21	51	0	.	0	0	0	0	0	5
RBM14	10432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66384417	66384417	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBM14-92	NM_001198837	exon1	c.C226G	p.L76V	AGGCCTCTTAATA	.	122	11	66	0	.	0	0	0	0	0	4
OR2AT4	341152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	74800245	74800245	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2AT4-69	NM_001005285	exon1	c.G514C	p.A172P	TATATGCCATCTG	.	103	43	144	0	.	0	0	0	0	0	5
MLL	4297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118344503	118344503	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLL-1255	NM_001197104	exon3	c.G2629C	p.D877H	GAGAGAGACCGGG	.	49	18	49	0	.	0	0	0	0	0	5
HMBS	3145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	118963200	118963200	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HMBS-90	NM_000190	exon11	c.C738T	p.R246R	GCTTCGCTGCATC	.	75	6	85	0	.	0	0	0	0	0	3
FLI1	2313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	128677078	128677078	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FLI1-1084	NM_002017	exon7	c.C725A	p.P242H	CAGGTCCTCCCCT	.	76	30	88	0	.	0	0	0	0	0	5
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2614015	2614015	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNA1C-34	NM_001129831	exon8	c.A1121G	p.D374G	TCAATGATGCCGT	.	245	47	180	0	.	0	0	0	0	0	5
CLEC4C	170482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7882323	7882323	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLEC4C-93	NM_130441	exon7	c.G511T	p.G171C	GTTCACCTGAGTG	.	127	25	92	0	.	0	0	0	0	0	5
A2ML1	144568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8995922	8995922	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	A2ML1-93	NM_144670	exon12	c.G1441A	p.A481T	GCCGATGCAAGCC	.	151	35	83	0	.	0	0	0	0	0	5
KLRC4-KLRK1	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	10541381	10541381	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001199805	exon7	c.G29C	p.R10P	CTGTGTCGAGACC	.	87	7	58	0	.	0	0	0	0	0	3
BCAT1	586	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	25002802	25002802	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BCAT1-522	NM_001178093	exon6	c.A628C	p.T210P	TAAAGGTTCCACT	.	99	37	97	1	.	0	0	0	0	0	4
ITPR2	3709	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	26809287	26809287	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITPR2-542	NM_002223	exon19	c.T2387G	p.V796G	ACAGGCACCACGG	.	137	40	129	1	.	0	0	0	0	0	4
ANO6	196527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	45833607	45833607	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANO6-516	NM_001142679	exon20	c.C2676G	p.L892L	CTCCCTCTATTAT	.	56	5	29	0	.	0	0	0	0	0	3
AQP2	359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50344855	50344855	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AQP2-92	NM_000486	exon1	c.T242A	p.V81D	GCCACGTCTCCGT	.	131	37	40	0	.	0	0	0	0	0	5
CNPY2	10330	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	56705180	56705180	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNPY2-68	NM_014255	exon4	c.G223C	p.E75Q	GGGCCTCTGAGCG	.	89	26	85	0	.	0	0	0	0	0	4
NAB2	4665	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	57486328	57486329	+	Frame_Shift_Del	DEL	GA	GA	-	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NAB2-92	NM_005967	exon3	c.1055_1056del	p.352_352del	TAGCCCGAGAGAG	.	189	52	168	0	.	0	0	0	0	0	3
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57577207	57577207	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRP1-596	NM_002332	exon35	c.G5708T	p.G1903V	TCAGGGGAATTCC	.	139	26	135	0	.	0	0	0	0	0	5
SLC6A15	55117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85257275	85257275	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC6A15-93	NM_182767	exon11	c.T1761A	p.A587A	AACACTAGCTATT	.	328	153	191	0	.	0	0	0	0	0	5
EEA1	8411	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	93202827	93202827	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EEA1-229	NM_003566	exon18	c.G2305A	p.E769K	TCAATTCTGTGGC	.	62	17	65	1	.	0	0	0	0	0	4
GPR133	283383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	131593280	131593280	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR133-191	NM_198827	exon18	c.A1899T	p.Q633H	CTGCCAAGTGATG	.	85	68	121	0	.	0	0	0	0	0	5
SUPT16H	11198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21840079	21840079	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SUPT16H-90	NM_007192	exon3	c.A284G	p.E95G	GCATTCTCATTGC	.	110	39	122	0	.	0	0	0	0	0	5
MIPOL1	145282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	37736243	37736243	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MIPOL1-91	NM_001195296	exon6	c.G120T	p.R40R	GCATCGGAAATCC	.	208	68	178	0	.	0	0	0	0	0	5
FRMD6	122786	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	52187025	52187025	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FRMD6-524	NM_001267046	exon11	c.C1277G	p.S426X	GCAGCTCAATGAC	.	128	37	146	2	.	0	0	0	0	0	3
TRMT5	57570	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	61446459	61446459	+	Missense_Mutation	SNP	G	G	C	rs188092813	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRMT5-91	NM_020810	exon2	c.C157G	p.Q53E	TTCTTTGACCCAA	.	116	7	74	0	G|0.999;C|0.000	0	0	0	0	0	3
YLPM1	56252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75265522	75265522	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	YLPM1-71	NM_019589	exon5	c.A3522G	p.G1174G	ACCAGGAGATGGT	.	115	31	97	0	.	0	0	0	0	0	5
IFT43	112752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	76452154	76452154	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IFT43-90	NM_001102564	exon1	c.G25C	p.E9Q	TTGGACGAGGAGC	.	109	27	100	0	.	0	0	0	0	0	5
ISM2	145501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77951057	77951057	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ISM2-91	NM_199296	exon2	c.C347T	p.A116V	GTGTTGGCCAATC	.	196	50	177	0	.	0	0	0	0	0	5
SNW1	22938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	78203387	78203387	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SNW1-187	NM_012245	exon6	c.A565T	p.N189Y	CAGAGTTGAATGC	.	55	38	46	0	.	0	0	0	0	0	5
ZNF770	54989	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	35275401	35275401	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF770-91	NM_014106	exon3	c.C235T	p.L79L	AAGGCAGACTATG	.	37	19	48	1	.	0	0	0	0	0	4
AKAP13	11214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86286897	86286897	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AKAP13-258	NM_006738	exon36	c.C8245A	p.H2749N	CCTTTTCACATAC	.	103	40	99	0	.	0	0	0	0	0	5
MAN2A2	4122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91450636	91450636	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAN2A2-136	NM_006122	exon7	c.A1107G	p.Q369Q	CTGCCAATTTGAT	.	61	28	73	0	.	0	0	0	0	0	5
TMC7	79905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19056276	19056276	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMC7-93	NM_024847	exon10	c.G1408C	p.D470H	TCCTGTGATGATG	.	67	27	126	0	.	0	0	0	0	0	5
MC1R	4157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89985902	89985902	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_002386	exon1	c.G236A	p.C79Y	TCTGCTGCCTGGC	.	123	57	113	0	.	0	0	0	0	0	5
FXR2	9513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7499311	7499311	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_004860	exon8	c.C662A	p.T221K	TTGCTTGTCTGAA	.	99	40	103	0	.	0	0	0	0	0	5
MYADML2	255275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79899111	79899111	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYADML2-68	NM_001145113	exon3	c.C507T	p.I169I	CTGGACGATCTTG	.	107	37	62	0	.	0	0	0	0	0	5
MYO1F	4542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8604874	8604874	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO1F-93	NM_012335	exon16	c.G1649A	p.G550E	TTGTCTCCATCCA	.	69	12	52	0	.	0	0	0	0	0	4
SPHK2	56848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49131974	49131974	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPHK2-658	NM_020126	exon7	c.C909G	p.N303K	GCTCAACTGCTCA	.	161	39	102	0	.	0	0	0	0	0	5
KCNA7	3743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49573389	49573389	+	Silent	SNP	G	G	A	rs145070146	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNA7-90	NM_031886	exon2	c.C1302T	p.D434D	CTCCCCGTCCACC	.	192	39	145	0	G|1.000;A|0.000	0	0	0	0	0	4
LILRA1	11024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55105904	55105904	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LILRA1-93	NM_006863	exon3	c.35-2A>G	.	TCTTCCAGGGCTG	.	188	27	111	0	.	0	0	0	0	0	4
LILRB1	10859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55144484	55144484	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LILRB1-137	NM_001081637	exon7	c.G976T	p.V326F	GACAGAGTCTCCC	.	184	41	102	0	.	0	0	0	0	0	5
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	24086377	24086377	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATAD2B-68	NM_001242338	exon12	c.C1353G	p.A451A	TGCTCTGGCAACC	.	99	49	113	0	.	0	0	0	0	0	5
ALK	238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	29445209	29445209	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALK-3833	NM_004304	exon23	c.3515+1G>A	.	GCTTTACCTGATG	.	48	15	69	0	.	0	0	0	0	0	4
POLR1A	25885	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	86315734	86315734	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POLR1A-93	NM_015425	exon6	c.G685A	p.A229T	CCATGGCTGGAAA	.	125	37	95	1	.	0	0	0	0	0	4
GPAT2	150763	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	96697819	96697819	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPAT2-90	NM_207328	exon3	c.G139C	p.V47L	GACCCACAAAGGG	.	692	133	505	1	.	0	0	0	0	0	3
AFF3	3899	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	100210195	100210195	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AFF3-230	NM_001025108	exon14	c.C2003G	p.S668C	ACGGAGGAGCGCA	.	92	18	60	1	.	0	0	0	0	0	4
IL18R1	8809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	103006523	103006523	+	Missense_Mutation	SNP	G	G	T	rs149204147	unknown;alternate_allele	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IL18R1-93	NM_003855	exon8	c.G957T	p.M319I	AGACATGGCTGAT	.	113	34	116	0	G|1.000;A|0.000	0	0	0	0	0	5
FBLN7	129804	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	112944994	112944994	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBLN7-69	NM_153214	exon8	c.G1231C	p.D411H	GAGGTGGACGTCG	.	88	30	56	1	.	0	0	0	0	0	4
CLASP1	23332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	122205879	122205879	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLASP1-91	NM_001207051	exon18	c.A1714T	p.S572C	TAGGACTTCTTTT	.	43	17	59	0	.	0	0	0	0	0	5
MYO7B	4648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128347750	128347750	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO7B-47	NM_001080527	exon16	c.C1938A	p.N646K	GACCAACTGCCAG	.	168	38	141	0	.	0	0	0	0	0	5
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	179621430	179621430	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_001267550	exon46	c.C10773A	p.S3591R	TATTTTGCTCTCC	.	96	7	63	0	.	0	0	0	0	0	3
PIKFYVE	200576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	209216103	209216103	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIKFYVE-583	NM_015040	exon38	c.C5639G	p.P1880R	AAATGCCTCGTCT	.	49	18	79	0	.	0	0	0	0	0	5
TMEM169	92691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	216960742	216960742	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM169-69	NM_001142310	exon3	c.G56A	p.G19D	ACCAGGGCTCTCT	.	72	32	63	0	.	0	0	0	0	0	5
EPB41L1	2036	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34776286	34776286	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPB41L1-93	NM_001258329	exon10	c.C891T	p.D297D	CATCGACATCATG	.	180	43	128	1	.	0	0	0	0	0	4
SLA2	84174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35242711	35242711	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLA2-90	NM_032214	exon7	c.A662G	p.D221G	TACCTGTCCAGCT	.	190	33	114	0	.	0	0	0	0	0	5
KIAA1755	85449	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36869832	36869832	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1755-95	NM_001029864	exon3	c.C701A	p.A234D	CCCTTGGCCAAAC	.	105	35	105	1	.	0	0	0	0	0	4
ETS2	2114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	40188949	40188949	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ETS2-849	NM_001256295	exon7	c.G943T	p.E315X	AAGACAGAAGATC	.	66	24	104	0	.	0	0	0	0	0	5
MCHR1	2847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	41075522	41075522	+	Missense_Mutation	SNP	A	A	G	rs147389509	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MCHR1-90	NM_005297	exon1	c.A73G	p.T25A	CAGGCTACGGAGG	.	145	40	111	0	A|1.000;G|0.000	0	0	0	0	0	4
BRD1	23774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50198009	50198009	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BRD1-91	NM_014577	exon3	c.1368-1G>T	.	TTTAACCTAAAAC	.	150	55	189	0	.	0	0	0	0	0	5
CHKB	1120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	51019907	51019907	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHKB-90	NM_005198	exon4	c.C523A	p.H175N	TGCCATGAAATTG	.	79	42	105	0	.	0	0	0	0	0	5
KCNH8	131096	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	19554465	19554465	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNH8-524	NM_144633	exon13	c.G2083T	p.E695X	TAGTCAGAGCCCA	.	141	51	171	1	.	0	0	0	0	0	4
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38966970	38966970	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCN11A-99	NM_014139	exon5	c.C648G	p.I216M	TAGTTTGATGGTG	.	177	85	240	0	.	0	0	0	0	0	5
CHMP2B	25978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	87294944	87294944	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHMP2B-229	NM_014043	exon3	c.G207A	p.R69R	TCTACGGAAACAG	.	303	109	263	0	.	0	0	0	0	0	5
MYLK	4638	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	123419214	123419214	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYLK-365	NM_053025	exon18	c.C3101A	p.T1034N	TTCAGGGTCTCAG	.	151	33	144	2	.	0	0	0	0	0	4
SMC4	10051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	160148934	160148934	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMC4-291	NM_005496	exon19	c.G3055C	p.E1019Q	AAACTTGAACAAA	.	227	54	192	0	.	0	0	0	0	0	5
FXR1	8087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	180687983	180687983	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FXR1-153	NM_001013438	exon15	c.T1440A	p.L480L	CTTACTTGATAAT	.	232	26	224	0	.	0	0	0	0	0	4
ATP13A5	344905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193032830	193032830	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP13A5-144	NM_198505	exon18	c.T2089C	p.L697L	TTTTCAAGCGATT	.	68	23	41	0	.	0	0	0	0	0	5
PIGG	54872	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	517287	517289	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIGG-92	NM_001127178	exon9	c.1654_1656del	p.552_552del	CTAGACCTTCTTA	.	248	64	212	0	.	0	0	0	0	0	3
SH3D19	152503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	152043252	152043252	+	Missense_Mutation	SNP	C	C	G	rs199694166	unknown;alternate_allele	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SH3D19-92	NM_001009555	exon21	c.G2364C	p.Q788H	GCTGATCTGTAGA	.	49	19	77	0	C|0.999;A|0.001	0	0	0	0	0	5
RAD1	5810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	34913589	34913589	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAD1-227	NM_002853	exon3	c.C293G	p.S98X	GGACTTGATCCAA	.	232	52	195	0	.	0	0	0	0	0	5
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38427121	38427121	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EGFLAM-187	NM_001205301	exon14	c.G1821C	p.L607F	CACCTTGACCATT	.	61	27	46	0	.	0	0	0	0	0	5
ELOVL7	79993	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	60067796	60067796	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ELOVL7-90	NM_001104558	exon3	c.A189G	p.E63E	CTTGAGTTCAAAG	.	219	61	176	0	.	0	0	0	0	0	4
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	71495181	71495181	+	Missense_Mutation	SNP	C	C	A	rs113459978	unknown;alternate_allele	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAP1B-155	NM_005909	exon5	c.C5999A	p.T2000K	GCCACACACTTGG	.	61	21	77	0	C|0.500;T|0.500	0	0	0	0	0	5
HOMER1	9456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	78671991	78671991	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HOMER1-90	NM_004272	exon9	c.C906C	p.L302L	TTGTCCCTCCAGG	.	88	20	93	0	.	0	0	0	0	0	5
HSD17B4	3295	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	118844896	118844896	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HSD17B4-92	NM_001199291	exon17	c.G1469A	p.G490D	TTGTTGGCTCTGG	.	50	4	40	0	.	0	0	0	0	0	3
PCDHB11	56125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140579540	140579540	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB11-96	NM_018931	exon1	c.C193T	p.R65W	GGGGCTCGGGTGG	.	62	17	33	0	.	0	0	0	0	0	5
NEDD9	4739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	11185653	11185653	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NEDD9-226	NM_001142393	exon8	c.C2247A	p.V749V	GAGGATGACAAAC	.	201	71	227	0	.	0	0	0	0	0	5
TRIM39	56658	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30303702	30303702	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRIM39-161	NM_021253	exon5	c.G730C	p.A244P	CACTTGGCTGCCG	.	123	15	98	1	.	0	0	0	0	0	3
FKBPL	63943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32096557	32096557	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FKBPL-204	NM_022110	exon2	c.A1001T	p.K334M	TGGTTCTTCCCCT	.	213	40	130	0	.	0	0	0	0	0	5
LRFN2	57497	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	40399886	40399886	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRFN2-93	NM_020737	exon2	c.G967C	p.V323L	GGGCTACCCAGTG	.	75	6	43	0	.	0	0	0	0	0	3
PGK2	5232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49754247	49754247	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PGK2-91	NM_138733	exon1	c.A654G	p.A218A	CTTGTCTGCCACT	.	356	71	241	0	.	0	0	0	0	0	5
DST	667	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	56434803	56434805	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DST-523	NM_015548	exon35	c.5858_5860del	p.1953_1954del	TTACAGCTTCTTT	.	36	11	39	0	.	0	0	0	0	0	3
FILIP1	27145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	76022190	76022190	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FILIP1-94	NM_015687	exon5	c.C3358G	p.P1120A	CACCAGGCCGTGA	.	435	83	302	0	.	0	0	0	0	0	5
HACE1	57531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	105219214	105219214	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HACE1-663	NM_020771	exon19	c.A2065C	p.K689Q	AATTTTTCGCATA	.	89	36	69	0	.	0	0	0	0	0	5
AHI1	54806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	135726087	135726087	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AHI1-227	NM_001134830	exon21	c.2988+2T>G	.	CTACTTACTTTTG	.	49	14	54	0	.	0	0	0	0	0	4
OGDH	4967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44714133	44714133	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OGDH-228	NM_002541	exon7	c.C912T	p.Y304Y	GGACTACGTGATC	.	172	63	279	0	.	0	0	0	0	0	5
LRRD1	401387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	91793258	91793258	+	Nonsense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001161528	exon1	c.T1259G	p.L420X	TTTCTTAAATTGT	.	61	31	49	0	.	0	0	0	0	0	5
PARP12	64761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139737565	139737565	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PARP12-525	NM_022750	exon7	c.C1274T	p.A425V	AAGGTGGCTGCCT	.	68	49	186	0	.	0	0	0	0	0	5
NOS3	4846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150698393	150698393	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOS3-1011	NM_001160111	exon10	c.G1308T	p.K436N	GCAGAAGGCCAGG	.	19	12	45	0	.	0	0	0	0	0	5
SLC20A2	6575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	42294695	42294695	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC20A2-92	NM_001257181	exon8	c.C1335G	p.I445M	CGCCTCGATCTCC	.	104	17	37	0	.	0	0	0	0	0	4
ZNF704	619279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	81553604	81553604	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF704-90	NM_001033723	exon9	c.C1236T	p.D412D	CTCTCAGTCGAGG	.	118	27	43	0	.	0	0	0	0	0	5
CHMP4C	92421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	82670423	82670423	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHMP4C-92	NM_152284	exon4	c.A530G	p.N177S	AATTAAATAAGAA	.	177	39	114	0	.	0	0	0	0	0	5
MPDZ	8777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	13192144	13192144	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MPDZ-231	NM_003829	exon15	c.G1954T	p.E652X	TTAGCTCAATATC	.	110	21	72	0	.	0	0	0	0	0	5
IFNA8	3445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21409580	21409580	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IFNA8-90	NM_002170	exon1	c.G405A	p.M135I	CCTGATGTACGAG	.	215	47	110	0	.	0	0	0	0	0	5
PIGO	84720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35092629	35092629	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIGO-290	NM_001201484	exon8	c.G1255A	p.A419T	GTGTCGCCTCAGC	.	81	21	88	0	.	0	0	0	0	0	5
PCSK5	5125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	78910311	78910311	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCSK5-93	NM_001190482	exon26	c.G3306A	p.E1102E	TGAAGAGGGCTTC	.	266	82	267	0	.	0	0	0	0	0	5
OR1K1	392392	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	125562456	125562458	+	In_Frame_Del	DEL	ACA	ACA	-	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	ACA	ACA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR1K1-69	NM_080859	exon1	c.55_57del	p.19_19del	GGACTGACAACAA	.	196	42	125	0	.	0	0	0	0	0	3
PRDM12	59335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	133556750	133556750	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRDM12-90	NM_021619	exon5	c.G798A	p.T266T	CCACACGCTGGAC	.	122	27	27	0	.	0	0	0	0	0	4
PAEP	5047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	138453660	138453660	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAEP-68	NM_002571	exon1	c.C13T	p.L5L	TGCCTCCTGCTCA	.	205	45	115	0	.	0	0	0	0	0	5
MAP3K15	389840	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	19425347	19425347	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAP3K15-335	NM_001001671	exon13	c.T1803A	p.D601E	AAAGTCATCAGAA	.	251	21	164	0	.	0	0	0	0	0	3
PHEX	5251	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	22117127	22117127	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHEX-132	NM_000444	exon9	c.G937C	p.D313H	CAGTTCGACTGGC	.	76	21	59	0	.	0	0	0	0	0	3
KLHL15	80311	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	24006591	24006591	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLHL15-131	NM_030624	exon4	c.G1262T	p.G421V	ACTGTCCCCTCAT	.	272	72	228	1	.	0	0	0	0	0	3
FAM47C	442444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	37026574	37026574	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM47C-111	NM_001013736	exon1	c.G91A	p.A31T	TACTTCGCGAAGC	.	423	28	368	0	.	0	0	0	0	0	3
FAM47C	442444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	37028029	37028029	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM47C-111	NM_001013736	exon1	c.G1546C	p.E516Q	CCTTCTGAGACTG	.	80	29	83	0	.	0	0	0	0	0	5
GPR82	27197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	41586498	41586498	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR82-110	NM_080817	exon3	c.C219G	p.I73M	GAGTATCTATTTC	.	130	41	120	0	.	0	0	0	0	0	5
IQSEC2	23096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53284064	53284064	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IQSEC2-178	NM_001111125	exon4	c.C1049G	p.A350G	CTGGCAGCCCTGC	.	182	45	144	0	.	0	0	0	0	0	5
HUWE1	10075	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	53616611	53616611	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HUWE1-280	NM_031407	exon36	c.G4357A	p.E1453K	GCAGCTCATCAAG	.	225	56	217	1	.	0	0	0	0	0	3
COL4A6	1288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107447550	107447550	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL4A6-199	NM_001847	exon12	c.G783T	p.K261N	CACTACCTTGGAT	.	35	16	49	0	.	0	0	0	0	0	5
OCRL	4952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	128722897	128722897	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OCRL-206	NM_000276	exon22	c.C2376A	p.L792L	ACTGCTCATTTTC	.	62	8	73	0	.	0	0	0	0	0	4
RAX	30062	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	56939705	56939706	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAX-90	NM_013435	exon2	c.431_432insA	p.T144fs	TACGTGGTGAAAG	.	151	55	152	0	.	0	0	0	0	0	3
OR6C1	390321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	55714972	55714973	+	Missense_Mutation	DNP	GG	GG	TT	novel	unknown	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR6C1-69	NM_001005182	exon1	c.G590T	p.G197L	TGATGGGATTTTC	.	130	10	118	0	.	0	0	0	0	0	4
RPL22	6146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RPL22-650	NM_000983	exon2	c.44delA	p.K15fs	TGCTTCTTTTTTT	.	22	18	38	0	.	0	0	0	0	0	3
PLEKHG5	57449	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	6534211	6534211	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLEKHG5-652	NM_001265592	exon8	c.T690C	p.P230P	ATCTCCAGGCTTG	.	58	43	52	0	.	5	0	5	0	0	4
PER3	8863	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	7887490	7887490	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PER3-93	NM_016831	exon17	c.G2477T	p.G826V	TGCATGGGCTGCC	.	80	66	53	1	.	0	0	0	0	0	3
UBE4B	10277	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	10197164	10197164	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBE4B-229	NM_001105562	exon17	c.C2264T	p.T755M	TCCCTACGGAGTG	.	66	57	91	1	.	0	0	0	0	0	3
SPEN	23013	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	16254767	16254767	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPEN-298	NM_015001	exon11	c.C2032T	p.R678W	GATCCTCGGGAAT	.	162	149	230	2	.	0	0	0	0	0	3
ARHGEF10L	55160	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	17982377	17982377	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGEF10L-292	NM_018125	exon24	c.2485delG	p.G829fs	CAGGTCGGGGGCG	.	94	83	76	0	.	0	0	0	0	0	3
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	21276548	21276548	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EIF4G3-91	NM_001198803	exon13	c.C636T	p.S212S	ATGAGCGCTCTCC	.	93	44	79	0	.	3	2	1	0	0	5
SRRM1	10250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	24993380	24993380	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SRRM1-93	NM_005839	exon13	c.G1703A	p.R568Q	CTCCTCGACGGCG	.	395	149	509	0	.	34	18	16	0	0	5
C1orf172	126695	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27278436	27278436	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C1orf172-154	NM_152365	exon2	c.C436T	p.R146W	CATCCCGCCGGCT	.	108	8	55	0	.	0	0	0	0	0	3
SLC9A1	6548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27429001	27429001	+	Silent	SNP	G	G	A	rs144261466	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC9A1-91	NM_003047	exon8	c.C1695T	p.G565G	GCGCTCGCCAGCT	.	63	59	58	0	G|1.000;A|0.000	5	1	4	0	0	5
ZSCAN20	7579	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	33954759	33954759	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZSCAN20-93	NM_145238	exon4	c.G649A	p.V217I	GGGAGCGTTGGAG	.	167	82	173	1	.	0	0	0	0	0	3
CSF3R	1441	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	36935323	36935323	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSF3R-515	NM_156039	exon11	c.1404delC	p.P468fs	CGCGCTGGGGGGG	.	56	39	26	0	.	0	0	0	0	0	3
KIAA0754	643314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39876656	39876656	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_015038	exon1	c.T719C	p.V240A	AAGCTGTAGCAAC	.	100	77	147	0	.	0	0	0	0	0	5
KIAA0754	643314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39880128	39880128	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_015038	exon1	c.C4191T	p.T1397T	TGCAACCGCTGGA	.	143	123	127	0	.	0	0	0	0	0	5
SLC5A9	200010	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	48701436	48701436	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC5A9-93	NM_001135181	exon11	c.G1252A	p.A418T	ATGGCCGCTCTCA	.	255	15	313	0	.	0	0	0	0	0	3
C8B	732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	57415368	57415368	+	Missense_Mutation	SNP	G	G	A	rs150146785	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C8B-92	NM_000066	exon6	c.C724T	p.R242C	CATTGCGTTCAAA	.	60	51	98	1	G|0.999;A|0.001	0	0	0	0	0	4
DOCK7	85440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	62940939	62940939	+	Silent	SNP	G	G	A	rs202231787	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DOCK7-92	NM_001271999	exon46	c.C6012T	p.P2004P	GTCTGCGGGATCC	.	108	10	139	0	G|0.999;A|0.001	4	3	1	0	0	4
FNDC7	163479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	109273459	109273459	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FNDC7-92	NM_001144937	exon9	c.C1788T	p.C596C	AGGATGCATCACA	.	134	8	178	0	.	0	0	0	0	0	3
CSF1	1435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110467421	110467421	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSF1-91	NM_000757	exon7	c.G1593A	p.A531A	GAGAGCGGATTCT	.	163	67	248	0	.	0	0	0	0	0	5
MOV10	4343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	113237220	113237220	+	Missense_Mutation	SNP	G	G	A	rs112768939	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MOV10-95	NM_020963	exon9	c.G1441A	p.V481I	CGGGACGTCCCGC	.	107	94	55	0	A|0.000;C|0.000;G|0.999	3	0	3	0	0	4
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	150531111	150531111	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTSL4-92	NM_019032	exon15	c.G2545A	p.D849N	CACAGCGACTGGA	.	62	7	62	0	.	0	0	0	0	0	4
TPM3	7170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154141804	154141804	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TPM3-416	NM_152263	exon9	c.C831T	p.H277H	GAGGGCGTGGTCC	.	161	77	253	0	.	0	0	0	0	0	5
ARHGEF11	9826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156908212	156908212	+	Missense_Mutation	SNP	G	G	A	rs141649554	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGEF11-233	NM_198236	exon38	c.C4190T	p.T1397M	TTACCCGTAGCCT	.	125	110	166	0	G|1.000;A|0.000	0	0	0	0	0	5
ATP1A2	477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160100011	160100011	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP1A2-518	NM_000702	exon12	c.C1581T	p.L527L	CCCGCTCGACAAG	.	66	61	77	0	.	0	0	0	0	0	5
USP21	27005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161130593	161130593	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP21-660	NM_001014443	exon3	c.C163T	p.R55W	CCTCCCCGGCCAG	.	63	57	58	0	.	6	0	6	0	0	5
FAM5B	57795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	177245455	177245455	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM5B-28	NM_021165	exon6	c.C897T	p.C299C	CAAGTGCAGCCCC	.	396	175	427	0	.	0	0	0	0	0	5
KIAA1614	57710	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	180914481	180914481	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1614-26	NM_020950	exon9	c.C3330T	p.D1110D	GGAGGACGTGGGT	.	48	43	8	0	.	0	0	0	0	0	4
ATP2B4	493	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	203682343	203682343	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP2B4-517	NM_001001396	exon14	c.G2262A	p.A754A	CCTGGCGCGATCT	.	119	41	200	1	.	5	5	0	0	0	3
SRGAP2D	100996712	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	206566076	206566076	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001271887	exon2	c.G58A	p.D20N	AATGCCGACAGCA	.	900	131	1069	0	.	10	9	1	0	0	4
RASSF5	83593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	206757996	206757996	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RASSF5-660	NM_182663	exon4	c.G968A	p.R323Q	TTAAGCGGATACA	.	142	124	207	0	.	2	0	2	0	0	5
CR2	1380	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	207642044	207642044	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CR2-232	NM_001006658	exon3	c.618delC	p.V206fs	TGCTGTCCCCCCC	.	61	57	98	0	.	0	0	0	0	0	3
PLXNA2	5362	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	208390432	208390432	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLXNA2-92	NM_025179	exon2	c.G836A	p.R279H	ACGATGCGTGAGG	.	92	81	107	1	.	0	0	0	0	0	3
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	237811912	237811912	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RYR2-158	NM_001035	exon49	c.C7511T	p.T2504M	TAGATACGGTGAG	.	68	4	92	0	.	0	0	0	0	0	3
AKR1C3	8644	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	5139659	5139659	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AKR1C3-515	NM_001253908	exon3	c.C286T	p.R96X	TTGGTCCGACCAG	.	149	9	131	0	.	58	58	0	0	0	3
ITIH2	3698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	7768994	7768994	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITIH2-93	NM_002216	exon10	c.C1066T	p.R356X	AACATTCGAACTT	.	88	53	108	0	.	0	0	0	0	0	5
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	16994285	16994285	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CUBN-166	NM_001081	exon33	c.G4959A	p.A1653A	AGGTTGCGCTTGA	.	189	62	188	0	.	0	0	0	0	0	5
BMS1	9790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	43285924	43285924	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BMS1-93	NM_014753	exon5	c.C601T	p.R201X	AAGAAGCGATTAA	.	76	7	64	0	.	7	7	0	0	0	4
RET	5979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43622076	43622076	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RET-4507	NM_020630	exon19	c.C3093T	p.D1031D	TGACGACGGCCTC	.	90	26	65	0	.	6	3	3	0	0	5
PPYR1	5540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	47087520	47087520	+	Missense_Mutation	SNP	G	G	A	rs115443559	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPYR1-524	NM_005972	exon3	c.G737A	p.R246H	AGGGGCGCGTGTT	.	153	26	111	0	G|0.999;A|0.001	0	0	0	0	0	4
C10orf71	118461	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	10	50533416	50533416	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C10orf71-90	NM_001135196	exon3	c.G2826A	p.S942S	GGGGTCGAGCATG	.	127	83	86	0	.	0	0	0	0	0	3
DRGX	644168	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	50574313	50574313	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	.	.	.	.	GCTCGCGGGCCTT	.	127	79	44	1	.	0	0	0	0	0	3
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	55587306	55587306	+	Missense_Mutation	SNP	C	C	T	rs143538460	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH15-193	NM_001142763	exon33	c.G4229A	p.R1410H	GCTTGACGTCTTG	.	105	29	101	0	C|1.000;T|0.000	2	2	0	0	0	4
FAM13C	220965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61012730	61012730	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM13C-70	NM_198215	exon12	c.G1361A	p.R454H	TGTGGACGGTCTT	.	262	72	238	0	.	4	4	0	0	0	5
USP54	159195	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75290071	75290071	+	Missense_Mutation	SNP	C	C	T	rs150999517	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP54-721	NM_152586	exon12	c.G1658A	p.R553H	CAGTCACGAGAGT	.	160	56	175	1	C|0.999;T|0.000	0	0	0	0	0	4
ZSWIM8	23053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75552240	75552240	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001242488	exon10	c.C1943A	p.P648H	CCTGTCCTCTCCA	.	131	47	84	0	.	17	12	5	0	0	5
GHITM	27069	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	85909926	85909926	+	Silent	SNP	G	G	A	rs201995209	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GHITM-90	NM_014394	exon7	c.G708A	p.A236A	GTGTGCGCCCAGT	.	169	37	136	1	G|0.999;A|0.001	58	46	12	0	0	3
PAPSS2	9060	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	89469057	89469057	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAPSS2-493	NM_001015880	exon2	c.C132T	p.T44T	ATGTACCGTGTGG	.	33	12	44	0	.	1	1	0	0	0	4
LCOR	84458	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	98708916	98708916	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LCOR-189	NM_001170766	exon6	c.G102A	p.P34P	CCTGCCGAAAGCA	.	82	52	81	1	.	0	0	0	0	0	4
RRP12	23223	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	99129265	99129265	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RRP12-92	NM_015179	exon25	c.G2872A	p.V958M	TGACCACGTCACG	.	192	74	155	1	.	6	5	1	0	0	3
RRP12	23223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	99145706	99145706	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RRP12-92	NM_015179	exon9	c.C1062T	p.H354H	CCTGGCGTGGAAG	.	257	157	173	0	.	0	0	0	0	0	5
PDZD7	79955	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	102789754	102789754	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDZD7-136	NM_001195263	exon2	c.G223A	p.E75K	TACCTTCGATGGG	.	30	6	23	0	.	0	0	0	0	0	3
SUFU	51684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	104359294	104359294	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SUFU-2246	NM_001178133	exon8	c.C1015T	p.R339W	CACGACCGGGCCC	.	114	35	88	0	.	0	0	0	0	0	5
PDCD11	22984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105182858	105182858	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDCD11-275	NM_014976	exon18	c.G2611A	p.D871N	GTGCCCGACCTGG	.	294	188	215	0	.	2	0	2	0	0	5
CALHM1	255022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105215444	105215444	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CALHM1-91	NM_001001412	exon2	c.C616T	p.R206W	AGGGCCGCACAGA	.	161	19	76	0	.	0	0	0	0	0	4
INPP5F	22876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	121586489	121586489	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	INPP5F-229	NM_014937	exon20	c.A2596G	p.N866D	CTTACAAATTCTA	.	183	110	143	0	.	0	0	0	0	0	5
ADAM12	8038	ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127755329	127755329	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAM12-716	NM_021641	exon13	c.C1379T	p.P460L	GCGTCCGGCTTCA	.	374	122	339	2	.	0	0	0	0	0	3
PWWP2B	170394	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	134219725	134219725	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PWWP2B-90	NM_138499	exon2	c.C1721T	p.A574V	ATGCCGCAAGACA	.	159	103	121	2	.	60	16	44	0	0	3
RASSF7	8045	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	562158	562158	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RASSF7-91	NM_001143994	exon3	c.C204T	p.G68G	AGTGGGCGCCCAG	.	173	11	77	0	.	16	16	0	0	0	3
PHRF1	57661	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	11	598468	598468	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHRF1-22	NM_020901	exon9	c.G990A	p.T330T	CCTGACGCCGCGC	.	56	47	8	0	.	11	0	11	0	0	3
OR51F2	119694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4843086	4843086	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR51F2-70	NM_001004753	exon1	c.G471T	p.K157N	TGCCAAGATTGGG	.	148	77	198	1	.	0	0	0	0	0	4
MICAL2	9645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	12234878	12234878	+	Silent	SNP	G	G	A	rs138615174	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MICAL2-92	NM_014632	exon7	c.G768A	p.A256A	CACAGCGGAAGCC	.	101	99	107	0	G|1.000;A|0.000	0	0	0	0	0	5
INSC	387755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	15262049	15262049	+	Missense_Mutation	SNP	G	G	A	rs201482506	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	INSC-94	NM_001031853	exon12	c.G1591A	p.A531T	AGTGACGCCGTGC	.	112	51	117	0	G|0.999;A|0.000	0	0	0	0	0	5
HPS5	11234	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	18339355	18339355	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HPS5-133	NM_181507	exon2	c.G51A	p.E17E	TTCAAACTCTGCA	.	117	6	166	0	.	0	0	0	0	0	3
LDHA	3939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18422479	18422479	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LDHA-650	NM_001165414	exon4	c.G427A	p.V143M	CGTAACGTGAACA	.	130	76	191	0	.	2	2	0	0	0	5
NAV2	89797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	20075678	20075678	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NAV2-96	NM_001244963	exon19	c.C4603T	p.R1535W	TGGTTACGGTCCC	.	86	74	96	0	.	1	0	1	0	0	4
LRRC4C	57689	ucsc.edu;bcgsc.ca;mdanderson.org	37	11	40136451	40136451	+	Silent	SNP	C	C	T	rs116285789	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC4C-521	NM_001258419	exon7	c.G1392A	p.P464P	CTGAGACGGTTCC	.	183	88	168	1	C|0.996;T|0.004	6	1	5	0	0	3
SLC35C1	55343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	45832787	45832787	+	Silent	SNP	C	C	T	rs144046143	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC35C1-90	NM_018389	exon2	c.C996T	p.G332G	GCTGGGCGGCTCC	.	47	45	41	0	C|1.000;T|0.000	7	0	7	0	0	5
CRY2	1408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	45892023	45892023	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRY2-90	NM_021117	exon9	c.C1552T	p.R518W	ACCAGCCGGCTTA	.	127	20	169	0	.	5	5	0	0	0	5
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46914637	46914637	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRP4-94	NM_002334	exon13	c.C1584T	p.T528T	TGAGTCGGTCCAG	.	66	33	78	0	.	0	0	0	0	0	5
ZDHHC5	25921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57466653	57466653	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZDHHC5-226	NM_015457	exon11	c.G1745A	p.R582H	CCCCTCGTACTAG	.	57	53	57	0	.	8	0	8	0	0	5
AHNAK	79026	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62298815	62298815	+	Missense_Mutation	SNP	G	G	A	rs201304148	unknown;alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AHNAK-109	NM_001620	exon5	c.C3074T	p.A1025V	ACATTCGCTTTGG	.	107	16	140	1	G|1.000;C|0.000	2	2	0	0	0	3
NXF1	10482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62561845	62561845	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NXF1-228	NM_006362	exon19	c.G1645A	p.A549T	GCATAGCGAAGGC	.	132	64	189	0	.	67	34	33	0	0	5
C11orf84	144097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63594410	63594410	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C11orf84-90	NM_138471	exon6	c.G945A	p.P315P	CCCTCCGGGGCTC	.	58	25	30	0	.	1	1	0	0	0	5
SLC22A12	116085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64368361	64368361	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC22A12-91	NM_144585	exon9	c.G1549A	p.E517K	CTGCCCGAGACCC	.	35	12	20	0	.	0	0	0	0	0	5
POLA2	23649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65034978	65034978	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POLA2-227	NM_002689	exon3	c.C235T	p.H79Y	GCCAGGCATAGTA	.	58	48	100	0	.	1	1	0	0	0	5
PELI3	246330	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	66243098	66243098	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PELI3-91	NM_145065	exon8	c.C870T	p.D290D	GCAGGACGGCTCT	.	238	19	106	0	.	1	1	0	0	0	3
NUMA1	4926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71718457	71718457	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NUMA1-633	NM_006185	exon21	c.C5241T	p.D1747D	GGTGCCGTCTGGC	.	54	52	68	0	.	51	5	46	0	0	5
RPS3	6188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	75115215	75115215	+	Missense_Mutation	SNP	G	G	A	rs11546214	unknown;alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RPS3-90	NM_001260506	exon5	c.G550A	p.V184I	TACTACGTTGACA	.	179	159	175	0	.	925	70	855	0	0	5
KCTD21	283219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	77885166	77885166	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCTD21-69	NM_001029859	exon2	c.C435T	p.N145N	GTTGGCGTTGAAG	.	81	68	131	0	.	0	0	0	0	0	5
SLC36A4	120103	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92881964	92881964	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC36A4-93	NM_152313	exon11	c.C1254T	p.F418F	TCCAACGAAGGAA	.	150	141	207	2	.	1	0	1	0	0	4
HEPHL1	341208	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	93826774	93826774	+	Missense_Mutation	SNP	G	G	A	rs200108606	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HEPHL1-71	NM_001098672	exon13	c.G2402A	p.R801Q	AAGCCCGACCACC	.	175	9	226	0	G|0.999;A|0.000	0	0	0	0	0	3
POU2AF1	5450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111229514	111229514	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POU2AF1-658	NM_006235	exon2	c.C146T	p.A49V	CTCACCGCCGTAG	.	74	35	51	0	.	0	0	0	0	0	5
HTR3A	3359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	113860305	113860305	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HTR3A-90	NM_213621	exon8	c.G1371T	p.L457L	GCTGCTGCAGGAG	.	49	5	27	0	.	0	0	0	0	0	4
NXPE4	54827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	114453402	114453402	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001077639	exon3	c.G438A	p.A146A	CATCAGCGCTGGG	.	237	115	298	0	.	0	0	0	0	0	5
TMPRSS4	56649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	117984057	117984057	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMPRSS4-90	NM_019894	exon9	c.G817A	p.V273M	CTGGCTGTGGCCA	.	174	10	233	0	.	0	0	0	0	0	3
PHLDB1	23187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118495742	118495742	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHLDB1-90	NM_001144758	exon5	c.C448T	p.R150X	GGGGGCCGAGCCC	.	58	24	82	0	.	1	1	0	0	0	5
DDX6	1656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118635947	118635947	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DDX6-659	NM_004397	exon6	c.C616T	p.R206X	CATCTCGTAAATT	.	91	36	126	0	.	2	1	1	0	0	5
CXCR5	643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118764716	118764716	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CXCR5-721	NM_001716	exon2	c.G463A	p.V155I	CACGCCGTCCATG	.	125	62	58	0	.	0	0	0	0	0	5
POU2F3	25833	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	120175859	120175859	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POU2F3-92	NM_001244682	exon7	c.G571A	p.E191K	GACCTCGAGGAGC	.	111	6	117	0	.	0	0	0	0	0	3
VWA5A	4013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123993793	123993793	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VWA5A-92	NM_014622	exon7	c.T887C	p.M296T	GCCCCATGAGTAG	.	36	34	39	0	.	2	0	2	0	0	5
OR8D2	283160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124189576	124189576	+	Missense_Mutation	SNP	G	G	A	rs151287996	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR8D2-113	NM_001002918	exon1	c.C518T	p.T173M	CTGACCGTATGAG	.	74	62	113	0	G|1.000;A|0.000	0	0	0	0	0	5
WNT5B	81029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1742040	1742040	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WNT5B-562	NM_032642	exon3	c.C297T	p.N99N	GGACAACGCATCT	.	154	34	86	0	.	0	0	0	0	0	5
CACNA2D4	93589	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	1988971	1988971	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNA2D4-23	NM_172364	exon14	c.C1562T	p.T521M	CTCACCGTTTCGT	.	151	10	87	0	.	0	0	0	0	0	3
CACNA2D4	93589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2019113	2019113	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNA2D4-23	NM_172364	exon4	c.G445A	p.E149K	CCTCCTCGGCAGC	.	118	60	76	0	.	0	0	0	0	0	5
ANO2	57101	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	5724430	5724430	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANO2-139	NM_020373	exon18	c.G1850A	p.R617H	ATCAGGCGCTCTT	.	187	34	148	1	.	0	0	0	0	0	3
C1R	715	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7187965	7187965	+	Silent	SNP	C	C	T	rs147540938	by1000genomes	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	.	.	.	.	AGTGTTCGGGTCC	.	203	52	157	0	C|0.999;T|0.001	979	701	278	0	0	3
CLEC4A	50856	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	8290774	8290774	+	Missense_Mutation	SNP	G	G	A	rs200191238	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLEC4A-90	NM_016184	exon6	c.G605A	p.R202H	ATGAGCGCTGCGT	.	338	21	266	0	G|0.999;A|0.000	3	3	0	0	0	3
SLC2A13	114134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	40422282	40422282	+	Missense_Mutation	SNP	G	G	A	rs200980396	unknown;alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC2A13-515	NM_052885	exon3	c.C746T	p.A249V	ATAACCGCCGGAA	.	42	26	27	0	.	0	0	0	0	0	5
VDR	7421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48249477	48249477	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VDR-188	NM_001017536	exon7	c.G841A	p.A281T	GGTCAGCCAGGTG	.	454	223	299	0	.	0	0	0	0	0	5
OR8S1	341568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48921823	48921823	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR8S1-69	NM_001005203	exon2	c.G1017A	p.T339T	GGTCACGCCTCAA	.	60	31	20	0	.	0	0	0	0	0	5
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49434492	49434492	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLL2-612	NM_003482	exon31	c.7061delC	p.P2354fs	TGGGCAGGGGGTG	.	109	52	47	0	.	0	0	0	0	0	3
GPR84	53831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54757424	54757424	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR84-523	NM_020370	exon2	c.C212T	p.T71M	AGGAGCGTGCAGT	.	527	258	307	0	.	0	0	0	0	0	5
PA2G4	5036	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56504465	56504465	+	Silent	SNP	G	G	A	rs145895424	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PA2G4-68	NM_006191	exon9	c.G831A	p.P277P	CATGCCGTTTACT	.	162	79	120	1	G|1.000;A|0.000	2	2	0	0	0	4
MYO1A	4640	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57432600	57432600	+	Missense_Mutation	SNP	G	G	A	rs141039063	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO1A-231	NM_005379	exon16	c.C1526T	p.A509V	TTGCCCGCATAGT	.	289	65	170	2	G|1.000;A|0.000	0	0	0	0	0	4
TMTC2	160335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	83290288	83290288	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMTC2-92	NM_152588	exon3	c.G1346A	p.R449Q	AAAAGCGGTTCCT	.	96	42	83	0	.	1	1	0	0	0	5
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85554403	85554403	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRIQ1-95	NM_001079910	exon24	c.G4733A	p.R1578H	CTGTGCGTCTAGC	.	108	42	92	0	.	0	0	0	0	0	5
SCYL2	55681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	100732792	100732792	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCYL2-336	NM_017988	exon18	c.G2632T	p.G878C	ACTATGGGCAGTT	.	266	22	172	0	.	40	36	4	0	0	4
ACACB	32	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109613959	109613959	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACACB-98	NM_001093	exon8	c.C1328T	p.A443V	CCCAGGCAGCAGA	.	276	44	205	0	.	0	0	0	0	0	5
OAS2	4939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	113442751	113442751	+	Missense_Mutation	SNP	G	G	A	rs143746502	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OAS2-91	NM_002535	exon7	c.G1192A	p.A398T	TCAACCGCCAAAG	.	130	66	86	0	G|0.999;A|0.000	0	0	0	0	0	5
MAP1LC3B2	643246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117013775	117013775	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAP1LC3B2-68	NM_001085481	exon2	c.C28T	p.R10W	AAGCAGCGGCGCA	.	247	52	153	0	.	1	0	1	0	0	5
C12orf49	79794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117160928	117160928	+	Missense_Mutation	SNP	G	G	A	rs149801903	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C12orf49-91	NM_024738	exon2	c.C212T	p.P71L	TTGCTCGGACGAC	.	366	85	191	0	G|1.000;A|0.000	0	0	0	0	0	5
RHOF	54509	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	122219074	122219074	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RHOF-660	NM_019034	exon3	c.G251A	p.R84Q	AGGGGCCGCAGCC	.	247	52	109	0	.	27	25	2	0	0	4
SNRNP35	11066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	123950559	123950559	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SNRNP35-68	NM_180699	exon2	c.C487T	p.R163W	GGGGGACGGGACC	.	55	7	35	0	.	50	43	7	0	0	4
TMEM132D	121256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130184571	130184571	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM132D-106	NM_133448	exon2	c.G752T	p.R251L	CCTGTCCGGATCC	.	134	59	88	0	.	0	0	0	0	0	5
POLE	5426	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133249853	133249853	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POLE-233	NM_006231	exon14	c.C1370T	p.T457M	GAATACGTGGCCA	.	278	66	217	1	.	0	0	0	0	0	4
SPATA13	221178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	24825999	24825999	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPATA13-229	NM_001166271	exon4	c.C2163T	p.N721N	ATCCAACGGTGAG	.	63	52	65	0	.	0	0	0	0	0	5
TSC22D1	8848	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	45147753	45147753	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TSC22D1-90	NM_183422	exon1	c.G2458A	p.A820T	TAACTGCAGGCAA	.	103	9	131	0	.	4	4	0	0	0	3
ABCC4	10257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	95840746	95840746	+	Silent	SNP	G	G	A	rs150945397	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCC4-515	NM_005845	exon10	c.C1314T	p.G438G	CAATTCGCCAGGT	.	106	94	138	0	G|1.000;A|0.000	0	0	0	0	0	5
MCF2L	23263	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	113741680	113741680	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MCF2L-228	NM_001112732	exon22	c.C2505T	p.H835H	CCTGCACGAGAAG	.	344	62	114	1	.	1	1	0	0	0	3
TFDP1	7027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	114292172	114292172	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TFDP1-416	NM_007111	exon11	c.C1046T	p.T349M	TCACGACGGCAGG	.	363	44	144	0	.	24	20	4	0	0	5
EFS	10278	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	23828979	23828979	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EFS-153	NM_005864	exon4	c.C708T	p.P236P	TTCCTCGGGTGCT	.	83	13	70	0	.	0	0	0	0	0	3
AKAP6	9472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	33014537	33014537	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AKAP6-733	NM_004274	exon4	c.A678G	p.E226E	ATTCGAACTGTCT	.	420	188	288	1	.	0	0	0	0	0	5
BAZ1A	11177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	35231352	35231352	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BAZ1A-291	NM_013448	exon24	c.G3854A	p.R1285H	TGGCCACGACTTG	.	128	26	89	0	.	11	9	2	0	0	5
NIN	51199	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	51237214	51237215	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NIN-229	NM_020921	exon12	c.1325_1326del	p.442_442del	GATCTGCTCTCTC	.	127	59	89	0	.	0	0	0	0	0	3
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64644168	64644168	+	Silent	SNP	C	C	T	rs202141038	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SYNE2-164	NM_182914	exon96	c.C17523T	p.H5841H	GCTTCACGAGGAC	.	247	116	187	0	C|0.999;T|0.000	3	2	1	0	0	5
ACTN1	87	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	69371417	69371417	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACTN1-514	NM_001102	exon7	c.G631A	p.V211M	CTGCCACGTCAAA	.	245	27	144	0	.	2	1	1	0	0	4
GALNT16	57452	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	69792727	69792727	+	Missense_Mutation	SNP	G	G	A	rs138742665	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001168368	exon5	c.G551A	p.R184H	GCCTGCGCAATGA	.	264	14	149	0	G|1.000;A|0.000	2	2	0	0	0	3
PCNX	22990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	71575457	71575457	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCNX-91	NM_014982	exon34	c.G6438A	p.V2146V	GTTTGTGCCTTGT	.	283	60	173	0	.	18	17	1	0	0	5
ACOT2	10965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74040291	74040291	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACOT2-91	NM_006821	exon2	c.C843T	p.P281P	TCATCCCGAGGTT	.	294	49	185	0	.	0	0	0	0	0	5
SAMD15	161394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77845328	77845328	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SAMD15-90	NM_001010860	exon1	c.C1567T	p.R523W	AAGGAACGGGTCT	.	303	64	250	0	.	1	1	0	0	0	5
ZC3H14	79882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	89069362	89069362	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZC3H14-93	NM_001160104	exon12	c.C1705T	p.L569L	CACTTGCTGAGCA	.	151	62	113	0	.	13	7	6	0	0	5
PSMC1	5700	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	90730133	90730137	+	Frame_Shift_Del	DEL	TTTCA	TTTCA	-	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	TTTCA	TTTCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PSMC1-90	NM_002802	exon5	c.407_411del	p.136_137del	GCATTCTTTCATT	.	285	62	194	0	.	0	0	0	0	0	3
SYNE3	161176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95884311	95884311	+	Missense_Mutation	SNP	G	G	A	rs142276866	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_152592	exon17	c.C2780T	p.A927V	GGGAGCGCCACAC	.	182	81	41	0	G|1.000;A|0.000	0	0	0	0	0	5
ZNF839	55778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102793112	102793112	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF839-91	NM_018335	exon2	c.C1079T	p.T360M	GGTGCACGGAGGA	.	145	68	62	0	.	3	1	2	0	0	5
PPP1R13B	23368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104205313	104205313	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPP1R13B-227	NM_015316	exon13	c.C2640T	p.H880H	CAGCCCGTGCCCC	.	160	82	103	0	.	21	6	15	0	0	5
LACTB	114294	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	63433897	63433897	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LACTB-90	NM_032857	exon6	c.1537delC	p.P513fs	AAGGTTCCCCCAA	.	76	32	93	0	.	0	0	0	0	0	3
ACSBG1	23205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	78466041	78466041	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACSBG1-91	NM_015162	exon13	c.C1983T	p.I661I	CTCTTCGATGGCC	.	78	35	105	0	.	0	0	0	0	0	5
CRTC3	64784	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	91184391	91184391	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRTC3-393	NM_022769	exon14	c.G1611A	p.P537P	AAGCCCGTATTCC	.	110	45	130	0	.	7	4	3	0	0	4
PRSS27	83886	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2763556	2763556	+	Missense_Mutation	SNP	C	C	T	rs149957191	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRSS27-91	NM_031948	exon5	c.G652A	p.E218K	CCTCCTCGAAGCC	.	358	134	211	1	C|0.999;T|0.001	4	4	0	0	0	4
HMOX2	3163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	4558130	4558130	+	Silent	SNP	C	C	T	rs186971432	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HMOX2-90	NM_001127205	exon4	c.C621T	p.N207N	GATGAACGCCCTG	.	724	294	497	2	C|0.999;T|0.000	64	36	28	0	0	4
SYT17	51760	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	19194969	19194969	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SYT17-69	NM_016524	exon5	c.G451A	p.D151N	AACCCCGACGACT	.	299	144	146	2	.	6	0	6	0	0	3
LCMT1	51451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	25151548	25151548	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LCMT1-22	NM_016309	exon4	c.G384A	p.T128T	TGTCACGAGAAAG	.	142	62	130	0	.	16	11	5	0	0	5
PRSS8	5652	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	31144689	31144689	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_002773	exon3	c.124delC	p.Q42fs	GTGCTTGGGGGGC	.	240	130	59	0	.	0	0	0	0	0	3
ABCC12	94160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	48155704	48155704	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCC12-93	NM_033226	exon11	c.C1635T	p.Y545Y	TGAAACGTAGGCC	.	176	93	132	0	.	0	0	0	0	0	5
NOD2	64127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	50744753	50744753	+	Missense_Mutation	SNP	C	C	T	rs104895427	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOD2-231	NM_022162	exon4	c.C931T	p.R311W	CTGCAGCGGCTGC	.	104	54	46	0	C|0.999;T|0.001	0	0	0	0	0	5
RANBP10	57610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67765468	67765468	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RANBP10-227	NM_020850	exon7	c.G796A	p.V266M	GATGCACGAGGTA	.	275	29	136	0	.	2	2	0	0	0	4
PDPR	55066	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	70190402	70190402	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDPR-135	NM_017990	exon19	c.G2260A	p.A754T	CGCGACGCCCTCC	.	230	30	128	0	.	0	0	0	0	0	4
DHODH	1723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	72057466	72057466	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DHODH-227	NM_001361	exon8	c.C1067T	p.T356M	TGTACACGGCCCT	.	62	24	37	0	.	12	6	6	0	0	5
MBTPS1	8720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84129260	84129260	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MBTPS1-92	NM_003791	exon4	c.G572A	p.R191H	ACCTGGCGCGGGA	.	131	22	77	0	.	1	1	0	0	0	5
IL17C	27189	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	88706308	88706308	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IL17C-90	NM_013278	exon3	c.G422A	p.R141H	CGGGCCGCGAGAC	.	47	25	9	0	.	1	0	1	0	0	3
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89352532	89352532	+	Silent	SNP	C	C	T	rs149525788	unknown;alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD11-139	NM_001256183	exon8	c.G807A	p.T269T	CAGCGGCGTCTCG	.	158	41	104	0	C|1.000;G|0.000	16	8	8	0	0	5
RPH3AL	9501	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	169309	169309	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RPH3AL-91	NM_001190413	exon4	c.C253T	p.R85W	CATTCCGCCTCAT	.	79	65	86	1	.	0	0	0	0	0	3
MYO1C	4641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	1371412	1371412	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO1C-90	NM_001080779	exon28	c.G2766A	p.A922A	AGGCACCGCATAC	.	88	43	60	0	.	0	0	0	0	0	5
VMO1	284013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4688850	4688850	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VMO1-69	NM_182566	exon3	c.C416T	p.A139V	TTGTTCGCTGCTG	.	106	47	43	0	.	2	2	0	0	0	5
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343	bycluster	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TP53-70225	NM_000546	exon8	c.C817T	p.R273C	AAACACGCACCTC	.	79	74	119	0	.	2	0	2	0	0	5
MYH10	4628	ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8424545	8424545	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYH10-92	NM_001256012	exon18	c.C2016T	p.S672S	ATATGCGGAGCCA	.	155	75	201	2	.	0	0	0	0	0	3
ADPRM	56985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10614312	10614312	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_020233	exon4	c.G880A	p.V294I	TACCACGTCAACC	.	132	18	171	0	.	3	3	0	0	0	4
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	11778483	11778483	+	Missense_Mutation	SNP	C	C	T	rs145738103	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH9-168	NM_001372	exon53	c.C10460T	p.T3487M	GGGTCACGCAGAT	.	77	5	95	0	C|0.999;T|0.001	0	0	0	0	0	3
LHX1	3975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	35298051	35298051	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LHX1-92	NM_005568	exon3	c.G542A	p.R181Q	AGCGGCGGGGACC	.	194	172	79	0	.	0	0	0	0	0	5
IKZF3	22806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37934013	37934013	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IKZF3-971	NM_012481	exon7	c.G717T	p.A239A	TGCCTCCGCACTT	.	105	42	95	0	.	0	0	0	0	0	5
RAPGEFL1	51195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38345578	38345578	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAPGEFL1-229	NM_016339	exon6	c.C447T	p.P149P	GGAGCCCGCGGGG	.	58	39	110	0	.	3	1	2	0	0	5
SMARCE1	6605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38786977	38786977	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMARCE1-227	NM_003079	exon10	c.C1016T	p.P339L	TCCATCGGAATGT	.	71	63	121	0	.	0	0	0	0	0	5
KRT33B	3884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39521212	39521212	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRT33B-90	NM_002279	exon6	c.C916T	p.R306C	TGTAGCGGGCCTC	.	107	104	83	0	.	0	0	0	0	0	5
KRT32	3882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39623234	39623234	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRT32-90	NM_002278	exon1	c.G344A	p.R115Q	AGCTGCCGCACCC	.	86	38	89	0	.	0	0	0	0	0	4
CNTNAP1	8506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40838076	40838076	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTNAP1-525	NM_003632	exon6	c.C817T	p.R273C	TTTGGCCGCGATG	.	164	76	187	0	.	1	0	1	0	0	5
WNK4	65266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40948205	40948205	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WNK4-336	NM_032387	exon17	c.C3496T	p.R1166W	TACAGCCGGCTGG	.	52	47	21	0	.	2	0	2	0	0	5
AOC3	8639	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	41004636	41004636	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AOC3-516	NM_003734	exon1	c.C1276T	p.R426C	ACAATACGTGATG	.	168	9	196	0	.	3	3	0	0	0	3
HDAC5	10014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42170066	42170066	+	Silent	SNP	G	G	A	rs199980075	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HDAC5-227	NM_001015053	exon7	c.C753T	p.D251D	GAAGTCGTCTCGA	.	69	60	81	0	G|0.999;A|0.000	8	0	8	0	0	5
TTLL6	284076	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	46878650	46878650	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTLL6-90	NM_001130918	exon5	c.G578A	p.R193H	AAAAAGCGGAAAT	.	122	46	183	1	.	1	0	1	0	0	4
ZNF652	22834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47395005	47395005	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF652-91	NM_001145365	exon2	c.G83A	p.R28H	CCACGACGGCTAT	.	218	120	254	0	.	0	0	0	0	0	5
YPEL2	388403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	57430826	57430826	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	YPEL2-90	NM_001005404	exon2	c.G56A	p.R19Q	GCCACCGGACCTA	.	123	112	149	0	.	0	0	0	0	0	5
STRADA	92335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	61780974	61780974	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STRADA-547	NM_001003787	exon13	c.C1281T	p.D427D	CCAATCGTCCACC	.	86	23	132	0	.	15	11	4	0	0	4
GRIN2C	2905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72843589	72843589	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRIN2C-228	NM_000835	exon9	c.C1859T	p.P620L	CCCCGCGGGTTCT	.	114	43	138	0	.	22	7	15	0	0	5
ITGB4	3691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73750779	73750779	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITGB4-227	NM_000213	exon34	c.G4441A	p.V1481M	CACCGCGTGCTAA	.	164	151	178	1	.	1	0	1	0	0	4
ZACN	353174	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	74077421	74077421	+	Missense_Mutation	SNP	G	G	A	rs143316623	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZACN-90	NM_180990	exon6	c.G607A	p.V203I	GAATACGTAGTTT	.	195	14	221	0	G|0.998;A|0.002	84	73	11	0	0	3
TMC6	11322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76118720	76118720	+	Missense_Mutation	SNP	C	C	T	rs150505551	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMC6-90	NM_001127198	exon10	c.G1193A	p.R398H	TGGAGGCGGGAGG	.	120	38	61	0	C|1.000;T|0.000	1	1	0	0	0	5
CYTH1	9267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76695039	76695039	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CYTH1-228	NM_017456	exon8	c.G562A	p.V188I	AGAGGACGTAACA	.	104	48	144	0	.	0	0	0	0	0	5
BAIAP2	10458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79031712	79031712	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BAIAP2-90	NM_001144888	exon3	c.C162T	p.D54D	CTTTGACGCCCTG	.	23	20	30	0	.	5	2	3	0	0	5
EMILIN2	84034	ucsc.edu;bcgsc.ca;mdanderson.org	37	18	2891551	2891551	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EMILIN2-93	NM_032048	exon4	c.C1426T	p.R476W	ACCCTTCGGGGCG	.	117	48	152	2	.	0	0	0	0	0	3
DSG2	1829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	29104699	29104699	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DSG2-563	NM_001943	exon8	c.G862A	p.V288I	GTCAACGTAGAAG	.	173	137	250	0	.	0	0	0	0	0	5
EPG5	57724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	43529494	43529494	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPG5-580	NM_020964	exon5	c.C1453T	p.R485X	GGCATCGAAGAAT	.	61	24	104	0	.	0	0	0	0	0	5
MBD1	4152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	47796100	47796100	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MBD1-228	NM_001204136	exon16	c.C1867A	p.P623T	CTCGTGGGTTCCA	.	144	51	177	0	.	46	17	29	0	0	5
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1043419	1043419	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCA7-98	NM_019112	exon9	c.G877A	p.G293R	ATCCTCGGGAAGC	.	330	65	148	0	.	2	2	0	0	0	5
C19orf24	55009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1277286	1277286	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C19orf24-90	NM_017914	exon2	c.G386A	p.R129Q	AGTCCCGGAATCT	.	304	122	121	0	.	0	0	0	0	0	5
REEP6	92840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1496349	1496349	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	REEP6-90	NM_138393	exon4	c.C414T	p.R138R	TCAGCGCGTCGTG	.	160	33	26	0	.	181	143	37	1	0	5
PTPRS	5802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	5206812	5206812	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPRS-357	NM_002850	exon38	c.C5820T	p.L1940L	GCTTCCGAGGTAC	.	221	51	114	0	.	103	77	26	0	0	5
VAV1	7409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6833562	6833562	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VAV1-1276	NM_005428	exon17	c.G1634A	p.R545H	GCTACCGCTGCCA	.	63	27	52	0	.	0	0	0	0	0	5
CAMSAP3	57662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7682925	7682925	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001080429	exon19	c.C3813T	p.G1271G	GAAGGGCGGCGGC	.	80	9	31	0	.	120	112	8	0	0	4
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9049154	9049154	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUC16-566	NM_024690	exon5	c.C32477T	p.T10826M	GGATGCGTGACCA	.	418	94	280	0	.	0	0	0	0	0	5
TYK2	7297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10476463	10476463	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TYK2-1009	NM_003331	exon7	c.G741A	p.P247P	TCGGCCCGGCTGG	.	262	146	36	0	.	16	10	6	0	0	5
FBXW9	84261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12805414	12805414	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXW9-227	NM_032301	exon3	c.C672T	p.T224T	CTCATGGGTACTA	.	254	126	143	0	.	0	0	0	0	0	5
CACNA1A	773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13356010	13356010	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNA1A-67	NM_001127221	exon31	c.G4939A	p.V1647M	CAGTCACGAGGAT	.	176	83	111	0	.	0	0	0	0	0	5
CACNA1A	773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13370425	13370425	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNA1A-67	NM_001127221	exon27	c.G4344T	p.W1448C	CAGAGCCCACAGC	.	221	115	175	0	.	0	0	0	0	0	5
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15276714	15276714	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOTCH3-855	NM_000435	exon30	c.C5551T	p.R1851C	CAGCACGGGCATA	.	239	32	68	0	.	2	2	0	0	0	5
C19orf44	84167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16611814	16611814	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C19orf44-90	NM_032207	exon2	c.G211A	p.G71R	GTGCTCGGGAGTG	.	109	59	77	0	.	0	0	0	0	0	5
SIN3B	23309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16986968	16986968	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SIN3B-228	NM_015260	exon16	c.G2791A	p.V931I	CGCTGCGTCCGCG	.	265	137	55	0	.	45	21	24	0	0	5
MYO9B	4650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17283599	17283599	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO9B-67	NM_001130065	exon13	c.G1967A	p.R656Q	ACATGCGGCCAGA	.	144	29	56	0	.	3	3	0	0	0	5
COLGALT1	79709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17679361	17679361	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_024656	exon5	c.G668A	p.R223Q	GCAAGCGAGACCG	.	240	50	144	0	.	1	0	1	0	0	5
PIK3R2	5296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18279340	18279340	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIK3R2-1311	NM_005027	exon14	c.A1792G	p.K598E	GGGATTAAAAATG	.	62	31	55	0	.	48	27	20	0	1	5
FKBP8	23770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18650417	18650417	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FKBP8-227	NM_012181	exon3	c.C406T	p.R136W	GCACCCGTGTGCC	.	173	80	19	0	.	144	85	59	0	0	5
NCAN	1463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19360612	19360612	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NCAN-94	NM_004386	exon15	c.C3858A	p.H1286Q	CCACCACCACCAA	.	365	102	259	0	.	0	0	0	0	0	5
ZNF429	353088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21720662	21720662	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF429-516	NM_001001415	exon4	c.A1807C	p.N603H	GCTTTTAATCGGT	.	49	13	47	0	.	2	1	1	0	0	5
GPATCH1	55094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	33616095	33616095	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPATCH1-91	NM_018025	exon18	c.G2606A	p.R869Q	ACAGGCGGAAGAA	.	183	39	101	0	.	0	0	0	0	0	5
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36222925	36222925	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLL4-697	NM_014727	exon27	c.G5554A	p.A1852T	GGCAGCGCCCCTC	.	73	18	35	0	.	30	18	12	0	0	5
ZNF781	163115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38160733	38160733	+	Missense_Mutation	SNP	C	C	T	rs12460961	byhapmap	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF781-90	NM_152605	exon4	c.G317A	p.R106Q	TGATGTCGAATAA	.	66	34	46	0	C|1.000;|0.000	4	1	3	0	0	5
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38591715	38591715	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SIPA1L3-91	NM_015073	exon6	c.C1878T	p.G626G	GGTGGGCATCCTC	.	177	32	103	0	.	0	0	0	0	0	5
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	40412003	40412003	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FCGBP-98	NM_003890	exon7	c.G3625A	p.G1209R	CACATCCGGGGCC	.	169	21	14	0	.	0	0	0	0	0	3
B3GNT8	374907	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	41931793	41931793	+	Silent	SNP	G	G	A	rs147647792	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	B3GNT8-90	NM_198540	exon3	c.C891T	p.F297F	ACCTTCGAAGAAG	.	166	56	59	1	G|1.000;A|0.000	1	1	0	0	0	3
KLC3	147700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	45852157	45852157	+	Missense_Mutation	SNP	G	G	A	rs190310418	by1000genomes	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLC3-91	NM_177417	exon7	c.G947A	p.R316H	GCCAGCGCGCTTT	.	122	29	47	0	G|0.999;A|0.000	7	5	2	0	0	4
EML2	24139	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	46129994	46129994	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EML2-154	NM_001193268	exon11	c.1313delG	p.G438fs	AAGCTGCCCCCCT	.	130	50	77	0	.	0	0	0	0	0	3
FKRP	79147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47259950	47259950	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FKRP-91	NM_024301	exon4	c.G1243A	p.V415M	TTGCACGTGGACC	.	123	55	34	0	.	15	4	11	0	0	5
ZC3H4	23211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47571027	47571027	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZC3H4-74	NM_015168	exon15	c.C2498T	p.P833L	GAAGCCGGGGGTC	.	83	42	25	0	.	7	3	4	0	0	5
GLTSCR1	29998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48204610	48204610	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GLTSCR1-48	NM_015711	exon15	c.G3621A	p.S1207S	CCGCTCGCTCGGC	.	98	36	27	0	.	33	14	19	0	0	5
ZNF473	25888	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50548675	50548675	+	Silent	SNP	C	C	T	rs146105171	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF473-91	NM_015428	exon5	c.C975T	p.C325C	CGAATGCGGCAAG	.	235	113	144	1	C|1.000;T|0.000	5	1	4	0	0	4
ZNF836	162962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52658977	52658977	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF836-46	NM_001102657	exon5	c.A1959G	p.L653L	ACGTGCTAGGCAT	.	177	18	122	0	.	44	35	9	0	0	4
ZNF701	55762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53086056	53086056	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF701-90	NM_001172655	exon5	c.C942T	p.C314C	TGTATGCGGCAAG	.	375	184	293	0	.	1	1	0	0	0	5
ZNF665	79788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53668192	53668192	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF665-70	NM_024733	exon4	c.T1551C	p.N517N	ACACTCATTACAC	.	149	85	90	0	.	4	4	0	0	0	5
NLRP12	91662	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54314363	54314363	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRP12-211	NM_144687	exon3	c.G550A	p.V184M	TCCTCGCGTGTCC	.	234	98	92	1	.	0	0	0	0	0	3
LILRB2	10288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54782326	54782326	+	Missense_Mutation	SNP	C	C	T	rs202223934	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LILRB2-91	NM_005874	exon7	c.G1046A	p.R349Q	AACTGCCGCCATG	.	589	282	424	1	C|0.999;T|0.001	0	0	0	0	0	5
LILRB1	10859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55144512	55144512	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LILRB1-137	NM_001081637	exon7	c.C1004T	p.T335M	GCCCCACGGTGGC	.	356	67	185	0	.	0	0	0	0	0	5
FAM71E2	284418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55872251	55872251	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145402	exon7	c.G781A	p.D261N	TTCTGTCGGGGCG	.	119	27	84	0	.	0	0	0	0	0	5
SBK2	646643	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56042650	56042650	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SBK2-68	NM_001101401	exon3	c.G316A	p.E106K	AGAACTCGTACAG	.	173	43	20	1	.	0	0	0	0	0	4
FIZ1	84922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56105009	56105009	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FIZ1-90	NM_032836	exon3	c.G298A	p.V100I	TGTGGACGACCTA	.	295	133	119	0	.	0	0	0	0	0	5
ZFP28	140612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57066397	57066397	+	Missense_Mutation	SNP	G	G	A	rs139300625	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFP28-91	NM_020828	exon8	c.G2243A	p.R748H	GTCATCGCAGAAG	.	120	26	72	0	G|1.000;A|0.000	6	5	1	0	0	4
ZNF264	9422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57723746	57723746	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF264-92	NM_003417	exon4	c.C1281T	p.F427F	GCCCTTCGTGTGC	.	157	25	98	0	.	2	2	0	0	0	5
ZNF805	390980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57765484	57765484	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001023563	exon4	c.G1297A	p.G433R	GAATGCGGAAAGG	.	125	52	81	0	.	2	2	0	0	0	5
ZNF419	79744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58004983	58004983	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF419-90	NM_001098491	exon5	c.G1061A	p.S354N	TCTATAGCCACAA	.	150	26	113	0	.	10	8	2	0	0	5
TSSC1	7260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	3196229	3196229	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TSSC1-90	NM_003310	exon8	c.C945T	p.D315D	ATCGTCGTCTACC	.	190	18	200	0	.	19	16	3	0	0	4
TRIM54	57159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27505759	27505759	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRIM54-227	NM_187841	exon1	c.G160A	p.V54I	AACGACGTCTTCC	.	133	119	170	1	.	0	0	0	0	0	5
FOXN2	3344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	48602109	48602109	+	Missense_Mutation	SNP	G	G	A	rs200645756	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FOXN2-226	NM_002158	exon7	c.G823A	p.G275S	AGTTACGGCAATG	.	184	153	269	1	G|0.999;A|0.001	0	0	0	0	0	5
FSHR	2492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	49244660	49244660	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FSHR-527	NM_181446	exon4	c.G342T	p.E114D	GAAGGCCTCAGGG	.	99	87	166	0	.	0	0	0	0	0	5
NRXN1	9378	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	50149257	50149257	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NRXN1-92	NM_001135659	exon24	c.A4469T	p.Y1490F	ATGGCATAGAGGA	.	163	143	208	2	.	0	0	0	0	0	3
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	61571010	61571010	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP34-579	NM_014709	exon16	c.T2440C	p.S814P	GGTGAGATGTCAG	.	232	201	278	0	.	0	0	0	0	0	5
TET3	200424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74273495	74273495	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_144993	exon1	c.G46A	p.A16T	CTAAGCGCCTCAG	.	90	17	98	0	.	0	0	0	0	0	4
GLI2	2736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	121744055	121744055	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GLI2-954	NM_005270	exon12	c.C2158T	p.R720C	CAGCTGCGCAAAC	.	248	216	167	1	.	4	0	4	0	0	4
PROC	5624	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	128185950	128185950	+	Missense_Mutation	SNP	C	C	T	rs121918154	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PROC-90	NM_000312	exon9	c.C814T	p.R272C	CTGCGGCGCTGGG	.	125	7	99	0	.	0	0	0	0	0	3
NR4A2	4929	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	157186454	157186454	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NR4A2-189	NM_006186	exon3	c.C245T	p.P82L	GACAGGGGCATTT	.	234	15	309	0	.	0	0	0	0	0	3
COL5A2	1290	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	189898939	189898939	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL5A2-92	NM_000393	exon54	c.C4357T	p.R1453W	CATTCCGCTTCTG	.	77	12	91	0	.	0	0	0	0	0	3
SDPR	8436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	192700699	192700699	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SDPR-92	NM_004657	exon2	c.G1228A	p.D410N	CCCCATCGGAGCG	.	53	46	31	0	.	2	2	0	0	0	5
SPATS2L	26010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201342532	201342532	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPATS2L-48	NM_001100423	exon13	c.C1455T	p.G485G	CAAAGGCGGTGCC	.	47	21	80	0	.	7	5	2	0	0	5
MDH1B	130752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207615686	207615686	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MDH1B-94	NM_001039845	exon6	c.C1024T	p.R342C	CAGGGCGTGAATA	.	28	16	66	0	.	0	0	0	0	0	5
SMARCAL1	50485	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	217300105	217300105	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMARCAL1-293	NM_014140	exon9	c.C1530T	p.N510N	CATCAACGTCGTG	.	190	167	194	2	.	3	0	3	0	0	3
PLCD4	84812	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219498432	219498432	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLCD4-661	NM_032726	exon11	c.C1554T	p.Y518Y	CTTCTACGAGATA	.	67	58	89	1	.	3	0	3	0	0	4
PDYN	5173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1961122	1961122	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDYN-92	NM_001190898	exon4	c.C612A	p.Y204X	GCGTTTGTACAGG	.	88	83	154	0	.	0	0	0	0	0	5
FASTKD5	60493	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	3127458	3127458	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FASTKD5-90	NM_021826	exon2	c.G2259A	p.A753A	AAGAAACGCCAAC	.	133	119	168	2	.	25	0	25	0	0	3
C20orf27	54976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3734755	3734755	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C20orf27-90	NM_001039140	exon6	c.G550A	p.A184T	GCTCGGCGCCCAC	.	211	55	44	0	.	23	19	4	0	0	5
ESF1	51575	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	13695562	13695563	+	Frame_Shift_Del	DEL	TT	TT	-	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ESF1-91	NM_001276380	exon14	c.2514_2515del	p.838_839del	GCTCTGTTTTGGT	.	46	40	75	0	.	0	0	0	0	0	3
DZANK1	55184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	18424085	18424085	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001099407	exon8	c.G653A	p.R218Q	GATGGCCGGGGGG	.	215	199	233	0	.	0	0	0	0	0	5
PLAGL2	5326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	30785207	30785207	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLAGL2-651	NM_002657	exon3	c.G539A	p.R180H	ACCCGGCGTGAGT	.	95	14	71	0	.	0	0	0	0	0	4
EPB41L1	2036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34778675	34778675	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPB41L1-93	NM_001258329	exon12	c.G1256A	p.R419H	TTGAGCGTTCTTC	.	56	47	59	0	.	24	1	23	0	0	5
PLCG1	5335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	39793679	39793679	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLCG1-911	NM_182811	exon13	c.G1324A	p.V442M	AAGCCCGTGGAGA	.	124	57	169	0	.	14	5	9	0	0	5
MYBL2	4605	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	42328526	42328526	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYBL2-415	NM_002466	exon7	c.C793T	p.R265X	GCAGTGCGAACAC	.	141	135	191	2	.	0	0	0	0	0	4
DIDO1	11083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	61522425	61522425	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DIDO1-96	NM_080797	exon15	c.G3428A	p.R1143H	CGGCCACGGCTGC	.	167	9	186	0	.	2	2	0	0	0	3
SCAF4	57466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33065781	33065781	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCAF4-90	NM_020706	exon12	c.C1339T	p.R447X	TAGATCGCCTCCT	.	72	17	88	0	.	5	5	0	0	0	5
ITSN1	6453	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	35208767	35208767	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITSN1-94	NM_001001132	exon29	c.C3492T	p.Y1164Y	GATGTACGACTAC	.	170	76	216	1	.	5	3	2	0	0	4
SIM2	6493	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	38098480	38098480	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SIM2-90	NM_005069	exon6	c.G604A	p.D202N	CTGTACGACTCCT	.	117	9	112	0	.	0	0	0	0	0	3
BRWD1	54014	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	40667746	40667746	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BRWD1-94	NM_018963	exon7	c.532delA	p.M178fs	TGTGCATTTTTAT	.	93	83	104	0	.	0	0	0	0	0	3
PFKL	5211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45736189	45736189	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PFKL-251	NM_002626	exon8	c.C810T	p.N270N	CCGCAACGGGAAG	.	189	65	97	0	.	12	9	3	0	0	5
PFKL	5211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45744758	45744758	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PFKL-251	NM_002626	exon18	c.C1835T	p.T612M	ACATGACGGAGAA	.	143	83	76	0	.	46	30	16	0	0	5
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	46900432	46900432	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL18A1-90	NM_030582	exon11	c.C1990T	p.R664W	GCCCTGCGGGTGA	.	50	5	70	0	.	0	0	0	0	0	4
PRODH	5625	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	18900804	18900804	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRODH-289	NM_016335	exon15	c.C1687T	p.R563C	CACGGCGGGACAA	.	187	10	81	0	.	1	1	0	0	0	3
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29444383	29444383	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNRF3-69	NM_001206998	exon7	c.C919T	p.R307W	GAGCTGCGGGTCA	.	161	145	169	1	.	0	0	0	0	0	5
TMPRSS6	164656	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	37466579	37466579	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMPRSS6-292	NM_153609	exon15	c.1813delG	p.A605fs	TGAGGGCCCCCCC	.	135	112	92	0	.	0	0	0	0	0	3
CACNA1I	8911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	39966861	39966861	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNA1I-135	NM_001003406	exon1	c.C104T	p.P35L	CCTCCCCGCCAGG	.	74	7	33	0	.	1	1	0	0	0	4
TNRC6B	23112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	40661638	40661638	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNRC6B-22	NM_001162501	exon5	c.1404delA	p.S468fs	TGGGTCAAAAAAT	.	55	45	67	0	.	0	0	0	0	0	3
NR2C2	7182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	15071882	15071882	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NR2C2-226	NM_003298	exon10	c.G1090A	p.V364I	ATCCACGTCATCA	.	183	164	207	0	.	5	2	3	0	0	5
TTC21A	199223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	39180220	39180220	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTC21A-91	NM_145755	exon29	c.G3904A	p.D1302N	CACCCCGACTACC	.	106	93	146	1	.	7	0	7	0	0	5
CCDC13	152206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42771959	42771959	+	Missense_Mutation	SNP	C	C	T	rs141485184	by1000genomes;alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC13-91	NM_144719	exon13	c.G1718A	p.R573Q	TGTTACCGTTTCT	.	131	115	181	0	C|0.999;G|0.000	0	0	0	0	0	5
NBEAL2	23218	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	47036641	47036641	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NBEAL2-69	NM_015175	exon13	c.G1416A	p.A472A	CCTAGCGCAACGC	.	109	99	8	0	.	2	1	1	0	0	4
KIF9	64147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47312930	47312930	+	Missense_Mutation	SNP	G	G	A	rs201201745	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF9-91	NM_182902	exon5	c.C388T	p.R130C	TGGGGCGTTCTTC	.	80	8	126	0	G|1.000;A|0.000	0	0	0	0	0	4
SCAP	22937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47465429	47465429	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCAP-91	NM_012235	exon9	c.G1144A	p.A382T	CTTGGGCGATCCG	.	88	75	116	0	.	0	0	0	0	0	5
BSN	8927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49694175	49694175	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BSN-97	NM_003458	exon5	c.C7186T	p.R2396W	CTAGAGCGGGAAC	.	337	123	250	0	.	0	0	0	0	0	5
SEMA3G	56920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52475300	52475300	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEMA3G-70	NM_020163	exon7	c.C793T	p.R265C	CCACGCGGCTGAC	.	160	152	123	1	.	0	0	0	0	0	4
MAGI1	9223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	65365023	65365023	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAGI1-661	NM_015520	exon18	c.G2992A	p.D998N	CCACGTCGTAGGG	.	74	73	32	0	.	3	1	2	0	0	5
PLCXD2	257068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111432936	111432936	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLCXD2-227	NM_001185106	exon3	c.G827A	p.R276Q	TTGCCCGGGGCTT	.	33	33	18	0	.	0	0	0	0	0	5
FBXO40	51725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121341510	121341510	+	Missense_Mutation	SNP	G	G	A	rs143415272	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXO40-273	NM_016298	exon3	c.G1234A	p.V412I	GGCCACGTCATCT	.	103	83	129	0	G|1.000;A|0.000	0	0	0	0	0	5
TMCC1	23023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129370538	129370538	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMCC1-91	NM_001017395	exon6	c.G1748A	p.R583Q	AGGTTCCGGGCAG	.	149	134	161	0	.	2	0	2	0	0	5
NPHP3	27031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	132407633	132407633	+	Missense_Mutation	SNP	C	C	T	rs150867534	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NPHP3-91	NM_153240	exon21	c.G2986A	p.V996M	ACTGCACGTATAC	.	87	10	79	0	C|0.999;T|0.000	4	4	0	0	0	4
KY	339855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	134322975	134322975	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KY-24	NM_178554	exon11	c.G1432A	p.G478R	AGCGCCCGTCGCT	.	65	7	72	0	.	0	0	0	0	0	4
IL20RB	53833	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	136701009	136701009	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IL20RB-91	NM_144717	exon3	c.G223A	p.E75K	GAGTACGAGAGCC	.	140	47	188	0	.	0	0	0	0	0	4
SLC9A9	285195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142987727	142987727	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC9A9-229	NM_173653	exon15	c.A1700G	p.Q567R	TAGGCTTGAGGAC	.	172	73	233	0	.	0	0	0	0	0	5
IGSF10	285313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151164728	151164728	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGSF10-102	NM_178822	exon4	c.G3041T	p.R1014M	ATTTTCCTCTGCC	.	72	62	112	0	.	0	0	0	0	0	5
SLITRK3	22865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	164907802	164907802	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLITRK3-100	NM_014926	exon2	c.C817T	p.R273X	TTTCTCGTAGGTC	.	55	50	91	0	.	0	0	0	0	0	5
CHRD	8646	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	184100913	184100913	+	Missense_Mutation	SNP	G	G	A	rs201032668	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHRD-93	NM_003741	exon10	c.G1175A	p.R392H	GGCTGCGCATCAG	.	74	31	39	1	G|0.999;A|0.000	1	1	0	0	0	3
ETV5	2119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	185766567	185766567	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ETV5-706	NM_004454	exon13	c.C1394T	p.P465L	AGGAACGGACGCT	.	194	171	232	0	.	4	1	3	0	0	5
UVSSA	57654	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	4	1374002	1374002	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_020894	exon11	c.G1736A	p.R579H	GTGAGCGCCAAGA	.	161	81	10	0	.	2	0	2	0	0	3
MFSD10	10227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	2933798	2933798	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MFSD10-68	NM_001120	exon6	c.G776A	p.R259H	TGGCCACGAGCGA	.	133	20	20	0	.	47	37	10	0	0	4
ADRA2C	152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3768709	3768709	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADRA2C-522	NM_000683	exon1	c.G376A	p.V126M	TGCGGCGTGTACC	.	178	45	25	0	.	3	3	0	0	0	5
CRMP1	1400	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	5844857	5844857	+	Missense_Mutation	SNP	G	G	A	rs142255876	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRMP1-92	NM_001014809	exon7	c.C995T	p.T332M	GGACCCGTGATGC	.	359	31	216	0	G|1.000;A|0.000	6	5	1	0	0	3
SORCS2	57537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	7738821	7738821	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SORCS2-91	NM_020777	exon26	c.G3337A	p.A1113T	GTGTACGCCCAAA	.	273	110	125	0	.	3	3	0	0	0	5
WDR1	9948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	10086077	10086077	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDR1-48	NM_017491	exon9	c.C1029T	p.D343D	GTGTCCGTCGTGG	.	324	54	220	0	.	0	0	0	0	0	5
FAM184B	27146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	17636715	17636715	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM184B-23	NM_015688	exon16	c.G2806A	p.A936T	ATGCTGCGTAGTG	.	95	29	71	0	.	1	1	0	0	0	5
PPARGC1A	10891	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	23803958	23803958	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPARGC1A-230	NM_013261	exon11	c.G2030A	p.R677H	ATCACACGGCGCT	.	177	77	109	1	.	0	0	0	0	0	3
CCDC149	91050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	24821571	24821571	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC149-68	NM_173463	exon12	c.G1069A	p.D357N	TGGGGTCGCTGAA	.	253	113	150	0	.	17	4	13	0	0	5
KDR	3791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55973911	55973911	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KDR-2298	NM_002253	exon10	c.G1405A	p.E469K	TGGGCTCGTTGGC	.	282	147	190	0	.	0	0	0	0	0	5
HNRPDL	9987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	83347682	83347682	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HNRPDL-91	NM_031372	exon6	c.G1126A	p.G376R	CATATCCGCCATA	.	156	70	116	0	.	119	79	39	1	0	5
PKD2	5311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	88996108	88996108	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKD2-91	NM_000297	exon14	c.C2667T	p.A889A	GGTGGCCGAGGTC	.	295	78	231	0	.	0	0	0	0	0	5
FAM13A	10144	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	89670963	89670963	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM13A-70	NM_014883	exon16	c.C2038T	p.R680W	ACTTCCGGATCTT	.	133	37	68	2	.	3	3	0	0	0	3
PCDH18	54510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	138442414	138442414	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH18-185	NM_019035	exon4	c.T3177C	p.S1059S	ATGCGTACTGGCT	.	267	104	170	0	.	11	5	6	0	0	5
CLPTM1L	81037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1339097	1339097	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLPTM1L-153	NM_030782	exon4	c.G477A	p.P159P	ACTCGTCGGCTTC	.	322	160	133	0	.	1	1	0	0	0	5
ADAMTS16	170690	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	5146290	5146290	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS16-275	NM_139056	exon3	c.G223A	p.V75M	GATTACGTGTCCC	.	221	80	150	1	.	0	0	0	0	0	4
MYO10	4651	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	16701081	16701081	+	Silent	SNP	C	C	T	rs150139256	by1000genomes	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO10-3	NM_012334	exon25	c.G3423A	p.A1141A	GGACTGCGCCCCC	.	278	124	129	2	C|0.999;T|0.000	1	0	1	0	0	3
DROSHA	29102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	31526976	31526976	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DROSHA-227	NM_013235	exon4	c.C64T	p.R22X	CTCCTCGTCCTCG	.	60	12	65	0	.	3	3	0	0	0	4
C1QTNF3	114899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	34043081	34043081	+	Silent	SNP	G	G	A	rs143587337	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C1QTNF3-90	NM_181435	exon1	c.C150T	p.S50S	GGAGCCGCTACGG	.	167	85	98	0	G|1.000;A|0.000	0	0	0	0	0	5
MAP3K1	4214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	56189493	56189493	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAP3K1-956	NM_005921	exon20	c.C4525T	p.R1509C	GTCTTTCGTACTA	.	233	111	186	0	.	2	1	1	0	0	5
ELOVL7	79993	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	60062450	60062450	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ELOVL7-90	NM_001104558	exon5	c.G344A	p.R115H	CAGGTACGTGCCA	.	240	103	221	1	.	0	0	0	0	0	3
ELOVL7	79993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	60067887	60067887	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ELOVL7-90	NM_001104558	exon3	c.C98T	p.S33L	AGAGGCGAGGACA	.	262	56	162	0	.	2	2	0	0	0	5
ZSWIM6	57688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	60839386	60839386	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_020928	exon14	c.G2890A	p.V964I	ACCATCGTCCGCC	.	230	55	141	0	.	2	1	1	0	0	5
NLN	57486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	65118697	65118697	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLN-90	NM_020726	exon13	c.C2069A	p.P690Q	GTGAGCCAAACCA	.	168	41	108	0	.	1	1	0	0	0	5
GFM2	84340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	74028894	74028894	+	Missense_Mutation	SNP	G	G	A	rs139234343	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GFM2-90	NM_032380	exon16	c.C1540T	p.R514C	CTTCACGCTGAAG	.	97	18	77	0	G|1.000;A|0.000	12	11	1	0	0	4
FNIP1	96459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	131014837	131014837	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FNIP1-92	NM_133372	exon12	c.C1234T	p.R412X	CAATTCGTGGCAT	.	413	220	327	0	.	0	0	0	0	0	5
PHF15	23338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	133896521	133896521	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHF15-90	NM_015288	exon6	c.T558C	p.I186I	GGCCATTGAGACG	.	437	60	283	0	.	4	4	0	0	0	5
PHF15	23338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	133896569	133896569	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHF15-90	NM_015288	exon6	c.C606T	p.C202C	TGTCTGCGACGTG	.	491	248	314	0	.	12	2	10	0	0	4
TRPC7	57113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	135692634	135692634	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001167576	exon2	c.G442A	p.D148N	CGTCGTCGCGCAG	.	162	79	11	0	.	0	0	0	0	0	4
PCDHA3	56145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140181912	140181912	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHA3-98	NM_031497	exon1	c.G1130A	p.R377H	CCGACCGCGACTC	.	451	97	221	0	.	1	1	0	0	0	5
PCDHB5	26167	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140515676	140515676	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB5-95	NM_015669	exon1	c.G660A	p.P220P	GGCTCCGCCCAGG	.	201	56	112	2	.	1	1	0	0	0	3
PCDHB12	56124	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140589396	140589396	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB12-93	NM_018932	exon1	c.C917A	p.P306H	CAGCACCTTTGGA	.	92	19	88	1	.	1	0	1	0	0	4
PCDHGC4	56098	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140865109	140865109	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHGC4-72	NM_018928	exon1	c.C369T	p.I123I	AGAGATCGTAGAT	.	167	10	127	0	.	0	0	0	0	0	3
ARAP3	64411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141051181	141051181	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARAP3-291	NM_022481	exon12	c.C1810T	p.R604W	GCTTCCGGAAGAG	.	195	86	129	0	.	1	1	0	0	0	5
CSF1R	1436	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	149435889	149435889	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSF1R-2640	NM_005211	exon18	c.G2335A	p.V779M	CTGCCACGTCCCG	.	416	114	227	2	.	0	0	0	0	0	3
C1QTNF2	114898	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	159781908	159781908	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C1QTNF2-91	NM_031908	exon2	c.C246G	p.S82R	AGGCAGGCTGCAG	.	33	27	14	0	.	0	0	0	0	0	4
FGFR4	2264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176520335	176520335	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FGFR4-1460	NM_022963	exon8	c.A1060G	p.T354A	ACAGGTACTGGGC	.	151	56	68	0	.	0	0	0	0	0	5
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176638620	176638620	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NSD1-188	NM_022455	exon5	c.C3220T	p.R1074C	CGAGAACGTGGAG	.	456	35	314	0	.	0	0	0	0	0	3
COL23A1	91522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	177669111	177669111	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL23A1-91	NM_173465	exon27	c.G1513A	p.G505S	TCCGGCCGGGGAC	.	156	32	36	0	.	1	1	0	0	0	5
RNF130	55819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179394008	179394008	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RNF130-227	NM_018434	exon7	c.G948A	p.P316P	CAAATTCGGCTGC	.	126	59	90	0	.	0	0	0	0	0	5
PXDC1	221749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	3738356	3738356	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_183373	exon2	c.G283A	p.D95N	CTATGTCGTGGGC	.	88	82	90	0	.	1	0	1	0	0	5
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	12120284	12120284	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIVEP1-139	NM_002114	exon4	c.G256A	p.V86I	TTCGCCGTTCTTC	.	47	28	40	0	.	0	0	0	0	0	5
VARS	7407	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	31759412	31759412	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VARS-93	NM_006295	exon8	c.G1075A	p.A359T	GGATGGCGTTGGT	.	144	123	179	0	.	2	0	2	0	0	4
C6orf106	64771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	34558353	34558353	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C6orf106-93	NM_024294	exon5	c.G886A	p.G296S	ACTGGCCGAAGGG	.	76	43	65	0	.	2	2	0	0	0	5
SRPK1	6732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35837637	35837637	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SRPK1-359	NM_003137	exon11	c.C1033T	p.R345C	TATCACGTTCCAT	.	89	75	153	0	.	1	0	1	0	0	5
MDGA1	266727	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	37619964	37619964	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MDGA1-91	NM_153487	exon7	c.C1135T	p.R379C	ACATGCGTGCCGG	.	115	55	140	1	.	0	0	0	0	0	3
DAAM2	23500	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	39835483	39835483	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DAAM2-228	NM_015345	exon6	c.G626A	p.R209H	GCCTACGCACAGA	.	71	62	106	1	.	1	1	0	0	0	3
CRISP2	7180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49660590	49660590	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRISP2-91	NM_001142408	exon10	c.C628A	p.L210I	TTAGGAGATCTTG	.	168	156	203	0	.	0	0	0	0	0	5
LMBRD1	55788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	70423650	70423650	+	Missense_Mutation	SNP	C	C	T	rs143758103	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LMBRD1-91	NM_018368	exon9	c.G802A	p.A268T	TTAAGGCGCGTTT	.	46	44	105	0	A|0.000;C|1.000;T|0.000	0	0	0	0	0	5
DPPA5	340168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	74063857	74063857	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DPPA5-90	NM_001025290	exon1	c.G92A	p.R31Q	AGCAGCCGCGTCT	.	75	32	79	0	.	0	0	0	0	0	5
PLAGL1	5325	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	144269186	144269186	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLAGL1-91	NM_001080953	exon6	c.C88T	p.R30W	ACGGCCGCTCCCT	.	274	253	278	2	.	0	0	0	0	0	4
AKAP12	9590	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	151672365	151672365	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AKAP12-293	NM_005100	exon4	c.2839delC	p.P947fs	GAAGAACCCCCCA	.	33	27	56	0	.	0	0	0	0	0	3
ELFN1	392617	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	1784620	1784620	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001128636	exon2	c.G388A	p.G130S	CTGCGCGGCCTGG	.	168	14	33	0	.	0	0	0	0	0	3
FOXK1	221937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4799094	4799094	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FOXK1-516	NM_001037165	exon7	c.G1564A	p.V522I	CCCACCGTCACCA	.	109	37	17	0	.	4	3	1	0	0	5
TNRC18	84629	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	5352513	5352515	+	In_Frame_Del	DEL	GAA	GAA	-	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	GAA	GAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNRC18-46	NM_001080495	exon27	c.8007_8009del	p.2669_2670del	GTGGAGGAAGAAG	.	55	13	51	0	.	0	0	0	0	0	3
DNAH11	8701	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	21646323	21646323	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH11-146	.	.	.	.	TTAATGCAGAAAA	.	49	10	38	0	.	2	2	0	0	0	3
BLVRA	644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	43827548	43827548	+	Missense_Mutation	SNP	G	G	A	rs138715080	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BLVRA-91	NM_001253823	exon4	c.G58A	p.G20S	CGAGCCGGCTCCG	.	264	76	221	0	G|1.000;A|0.000	26	18	8	0	0	5
POLM	27434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44114081	44114081	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POLM-229	NM_013284	exon7	c.T884C	p.V295A	GCATCTACATCGG	.	241	142	21	0	.	0	0	0	0	0	5
OGDH	4967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44747186	44747186	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OGDH-228	NM_002541	exon22	c.G2802A	p.S934S	GCTGTCGCCATTC	.	108	66	99	0	.	0	0	0	0	0	5
PION	54103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	76942815	76942815	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PION-514	NM_017439	exon28	c.G2261A	p.R754Q	GGAAGCCGCACAA	.	50	21	51	0	.	0	0	0	0	0	5
CACNA2D1	781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	81637024	81637024	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNA2D1-96	NM_000722	exon16	c.G1411A	p.G471S	ATTGGCCGGTTAT	.	95	34	121	0	.	0	0	0	0	0	5
GRM3	2913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86415919	86415919	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRM3-528	NM_000840	exon3	c.G811A	p.V271I	GCGCGCGTCGTGG	.	94	35	16	0	.	0	0	0	0	0	5
TECPR1	25851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	97854151	97854151	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TECPR1-91	NM_015395	exon19	c.G2652A	p.T884T	CTGGTCCGTGCCC	.	150	47	99	0	.	5	5	0	0	0	5
TRRAP	8295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	98609726	98609726	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRRAP-923	NM_001244580	exon72	c.C11328T	p.D3776D	CCGGGACGAGATC	.	232	79	183	0	.	29	22	7	0	0	5
SERPINE1	5054	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	100778833	100778833	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SERPINE1-652	NM_000602	exon6	c.G958A	p.D320N	ATGACCGACATGT	.	88	5	104	0	.	0	0	0	0	0	3
LRGUK	136332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	133932369	133932369	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRGUK-227	NM_144648	exon17	c.G2045A	p.R682H	GGATACGCCCTGA	.	140	80	126	0	.	1	1	0	0	0	5
NUP205	23165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135323345	135323345	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NUP205-207	NM_015135	exon38	c.T5306C	p.L1769S	TCATGTTACAGAG	.	185	36	158	0	.	18	12	6	0	0	5
ATP6V0A4	50617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138417706	138417706	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP6V0A4-91	NM_130841	exon16	c.C1824T	p.H608H	GGGGGCGTGCTGA	.	183	65	107	0	.	0	0	0	0	0	5
JHDM1D	80853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139818942	139818942	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	JHDM1D-91	NM_030647	exon9	c.T1217C	p.V406A	TTGGCTACAAACC	.	69	25	61	0	.	0	0	0	0	0	5
GSTK1	373156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142965205	142965205	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GSTK1-90	NM_001143679	exon6	c.G727A	p.V243M	ATCACCGTGGCCC	.	108	74	119	0	.	199	79	120	0	0	5
ZNF425	155054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	148801944	148801944	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF425-136	NM_001001661	exon4	c.G1019A	p.R340H	TTCAGGCGGAAGC	.	48	14	31	0	.	0	0	0	0	0	5
SMARCD3	6604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150938652	150938652	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMARCD3-228	NM_001003801	exon8	c.C865T	p.Q289X	CATACTGCCACAG	.	202	47	114	0	.	124	109	15	0	0	5
HTR5A	3361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	154863297	154863297	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HTR5A-155	NM_024012	exon1	c.C688T	p.R230C	AAGTTCCGCGTGG	.	261	64	110	0	.	0	0	0	0	0	5
RBM33	155435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	155534695	155534695	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBM33-23	NM_053043	exon13	c.G2232A	p.S744S	ACCCTCGCGGGCC	.	336	81	139	0	.	1	1	0	0	0	5
UBE3C	9690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	157013470	157013470	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBE3C-704	NM_014671	exon15	c.G2002A	p.V668M	CTGGACGGTGAGT	.	125	15	52	0	.	0	0	0	0	0	4
CSMD1	64478	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	3047597	3047597	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSMD1-86	NM_033225	exon34	c.C5235T	p.P1745P	GGGCTCGGGGACA	.	126	43	126	0	.	0	0	0	0	0	4
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10466464	10466464	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RP1L1-139	NM_178857	exon4	c.C5144T	p.T1715M	GGGTCCGTGTGGG	.	76	23	44	0	.	0	0	0	0	0	5
SORBS3	10174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22421834	22421834	+	Silent	SNP	G	G	A	rs201952170	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SORBS3-90	NM_005775	exon9	c.G714A	p.T238T	CTGGACGGAAGAG	.	162	104	128	0	G|0.999;A|0.000	0	0	0	0	0	5
UNC5D	137970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	35579761	35579761	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UNC5D-96	NM_080872	exon9	c.C1151T	p.S384L	TGTACTCGGGCTT	.	222	148	167	0	.	0	0	0	0	0	5
UNC5D	137970	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	35588557	35588557	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UNC5D-96	NM_080872	exon11	c.C1709G	p.A570G	ACGGTGCCATCCC	.	111	73	143	1	.	2	0	2	0	0	4
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	41561586	41561586	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANK1-716	NM_001142446	exon20	c.C2367T	p.N789N	AGCACCGTTTTTC	.	99	59	114	0	.	0	0	0	0	0	5
OPRK1	4986	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	54147371	54147371	+	Silent	SNP	C	C	T	rs200269505	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OPRK1-70	NM_000912	exon3	c.G558A	p.S186S	AGATGACGACAGC	.	216	69	185	1	.	0	0	0	0	0	4
ZFPM2	23414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	106814998	106814998	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFPM2-139	NM_012082	exon8	c.G2688A	p.P896P	GTTTCCGAATCCA	.	55	10	46	0	.	0	0	0	0	0	4
SYBU	55638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110587864	110587864	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SYBU-227	NM_001099752	exon8	c.G1263A	p.T421T	TTCCCCCGTGACC	.	109	34	129	0	.	32	26	6	0	0	5
PHF20L1	51105	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	133823330	133823330	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHF20L1-92	NM_016018	exon9	c.887delA	p.E296fs	GTGCTGAAAAAAA	.	71	43	82	0	.	0	0	0	0	0	3
FAM135B	51059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	139278014	139278014	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM135B-31	NM_015912	exon4	c.C229T	p.R77W	CATTCCGGTATAA	.	135	9	104	0	.	0	0	0	0	0	3
MROH6	642475	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	144653155	144653155	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001100878	exon4	c.C612T	p.A204A	GAGCTCGGCTGCT	.	97	9	69	0	.	1	0	1	0	0	3
SPATC1	375686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145094825	145094825	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPATC1-91	NM_001134374	exon2	c.C227T	p.P76L	TGCCCCCGTCCCC	.	107	26	70	0	.	0	0	0	0	0	5
CPSF1	29894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145620718	145620718	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CPSF1-91	NM_013291	exon27	c.C3028A	p.P1010T	GCCATGGGGCATC	.	222	75	108	0	.	78	66	12	0	0	5
RECQL4	9401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145736909	145736909	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RECQL4-1083	NM_004260	exon22	c.G3532A	p.G1178R	CCTGCCCGTACAC	.	182	40	86	0	.	89	64	24	0	1	5
KANK1	23189	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	712006	712006	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KANK1-517	NM_001256876	exon7	c.G1240A	p.V414M	ATCGTCGTGTACC	.	321	24	205	0	.	1	1	0	0	0	3
KANK1	23189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	738458	738458	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KANK1-517	NM_001256876	exon12	c.C3507T	p.S1169S	TTACAGCGTGTCC	.	274	58	206	0	.	3	2	1	0	0	5
VLDLR	7436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	2643347	2643347	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VLDLR-516	NM_003383	exon5	c.C636T	p.C212C	GGTATGCGACGAT	.	293	75	165	0	.	4	4	0	0	0	5
BNC2	54796	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	16419579	16419579	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BNC2-92	NM_017637	exon7	c.C2708T	p.S903L	TGCGACGAGTCCA	.	70	67	67	1	.	0	0	0	0	0	4
ANKRD18B	441459	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	9	33572324	33572324	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001244752	exon16	c.G2999A	p.R1000H	TGCTGCGTTGGGC	.	266	51	238	0	.	0	0	0	0	0	3
KIF24	347240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34306372	34306372	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF24-22	NM_194313	exon3	c.C691T	p.R231C	GGGGGCGTTTTCG	.	93	85	114	1	.	0	0	0	0	0	5
TMEM8B	51754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35853771	35853771	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM8B-91	NM_001042590	exon13	c.C1353T	p.N451N	CATCAACGAGCAG	.	43	37	13	0	.	16	0	16	0	0	5
GRHPR	9380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	37428531	37428531	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRHPR-90	NM_012203	exon5	c.C455T	p.T152M	GACTCACGCAGAG	.	123	115	30	0	.	75	0	75	0	0	5
TJP2	9414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	71861604	71861604	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TJP2-115	NM_001170414	exon19	c.2498-2A>G	.	TTCTATAGCTACA	.	94	94	80	0	.	0	0	0	0	0	4
VPS13A	23230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79933230	79933230	+	Missense_Mutation	SNP	C	C	T	rs144009026	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VPS13A-161	NM_001018038	exon41	c.C5036T	p.T1679M	AAGAAACGGCTTC	.	123	113	104	0	C|1.000;T|0.000	0	0	0	0	0	5
WNK2	65268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	96021245	96021245	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WNK2-765	NM_006648	exon11	c.G2415A	p.T805T	CATCACGCCCCTG	.	288	37	83	0	.	3	3	0	0	0	5
EPB41L4B	54566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	112042162	112042162	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPB41L4B-92	NM_019114	exon2	c.T346C	p.Y116H	AGTGGTACACAAT	.	134	32	94	0	.	2	1	1	0	0	5
C9orf43	257169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116176059	116176059	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C9orf43-90	NM_152786	exon3	c.G172A	p.V58M	CTCACCGTGGTAG	.	164	155	119	0	.	0	0	0	0	0	5
RABGAP1	23637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125861009	125861009	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RABGAP1-500	NM_012197	exon23	c.C2749T	p.R917C	ATGTGCCGTCGGG	.	97	30	70	0	.	21	18	3	0	0	5
FIBCD1	84929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	133799257	133799257	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FIBCD1-90	NM_001145106	exon5	c.C723T	p.P241P	GTCTCGGGGCCGG	.	331	308	34	0	.	0	0	0	0	0	5
SDCCAG3	10807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139299638	139299638	+	Missense_Mutation	SNP	G	G	A	rs200655256	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SDCCAG3-90	NM_001039707	exon7	c.C910T	p.R304W	ACTTCCGCTCAAG	.	118	112	80	0	G|0.999;A|0.000	25	0	25	0	0	5
PNPLA7	375775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140373513	140373513	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PNPLA7-91	NM_001098537	exon24	c.A2758G	p.K920E	CCAGCTTGGGCAG	.	308	49	47	0	.	0	0	0	0	0	5
ASMTL	8623	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	1522202	1522202	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASMTL-62	NM_004192	exon13	c.1826delG	p.G609fs	AGGACACCCCCCA	.	292	125	176	0	.	0	0	0	0	0	3
UBQLN2	29978	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	56591874	56591874	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBQLN2-131	NM_013444	exon1	c.1568delC	p.A523fs	CTGCAGCCCCCCC	.	57	48	21	0	.	0	0	0	0	0	3
TEX11	56159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	69902635	69902635	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TEX11-178	NM_001003811	exon15	c.C1090T	p.R364C	TAAAACGTTCATG	.	111	46	88	0	.	0	0	0	0	0	5
KIAA2022	340533	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	73961524	73961524	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA2022-183	NM_001008537	exon3	c.C2868T	p.T956T	GAGTTGGGTATCT	.	137	13	92	0	.	0	0	0	0	0	3
PRPS1	5631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	106890920	106890920	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRPS1-289	NM_002764	exon6	c.C789T	p.N263N	CAACAACGCATGC	.	216	103	167	0	.	30	14	16	0	0	5
HTR2C	3358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	114141204	114141204	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HTR2C-133	NM_001256761	exon6	c.C508T	p.R170C	GGTGTTCGTGAAC	.	251	90	186	0	.	0	0	0	0	0	5
NKAP	79576	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	119059239	119059239	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NKAP-132	NM_024528	exon9	c.1192delC	p.L398fs	TGGCCAGAATCTT	.	87	82	60	0	.	0	0	0	0	0	3
ATP1B4	23439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	119512613	119512613	+	Silent	SNP	C	C	T	rs148650396	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP1B4-131	NM_001142447	exon7	c.C897T	p.Y299Y	TTACTACGGCAAA	.	95	11	59	0	C|1.000;T|0.000	0	0	0	0	0	4
MAP7D3	79649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135323411	135323411	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAP7D3-110	NM_024597	exon5	c.G443A	p.R148H	AAAGTACGATAAA	.	105	41	72	0	.	0	0	0	0	0	5
ATP2B3	492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152807870	152807870	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP2B3-109	NM_001001344	exon4	c.C754T	p.R252C	CACGTGCGCAAGT	.	208	84	38	0	.	11	7	4	0	0	5
PLXNB3	5365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	153042767	153042767	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLXNB3-130	NM_001163257	exon31	c.C5101T	p.R1701W	AGCCTGCGGGAGC	.	198	85	15	0	.	97	54	43	0	0	4
PDZD4	57595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153073942	153073942	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDZD4-193	NM_032512	exon2	c.C169T	p.R57W	CCCCCCGGAGGCG	.	218	112	53	0	.	6	4	2	0	0	5
HIP1R	9026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	123339931	123339932	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIP1R-91	NM_003959	exon11	c.972_973insC	p.G324fs	CACAGGGCCCCCC	.	171	60	40	0	.	0	0	0	0	0	3
AMTN	401138	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	71394929	71394930	+	Splice_Site	INS	-	-	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AMTN-153	NM_212557	exon7	c.357+2->A	.	AATTGGTAAAAAA	.	194	63	180	0	.	0	0	0	0	0	3
BOP1	23246	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	145512978	145512979	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BOP1-90	NM_015201	exon2	c.107_108insC	p.L36fs	CAGAGGAGGGGGG	.	118	31	94	0	.	0	0	0	0	0	3
CAPN6	827	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	110496401	110496402	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CAPN6-195	NM_014289	exon4	c.341_342insA	p.T114fs	TTTTCTGTTTTTT	.	54	49	63	0	.	0	0	0	0	0	3
ING1	3621	bcgsc.ca	37	13	111371922	111371922	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ING1-515	NM_005537	exon2	c.C912T	p.N304N	TGAGAACGCGTCC	.	282	255	82	2	.	16	1	15	0	0	1
SMG1	23049	broad.mit.edu	37	16	18887699	18887699	+	Missense_Mutation	SNP	T	T	C	rs1136817	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMG1-1160	NM_015092	exon13	c.A1637G	p.H546R	ACAGCATGGGCTA	.	96	10	76	1	T|0.640;C|0.360	15	12	3	0	0	1
ANKRD11	29123	broad.mit.edu	37	16	89345709	89345709	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD11-139	NM_001256183	exon9	c.C7241T	p.T2414M	GCCAGCGTCTGCT	.	301	153	58	2	.	34	16	18	0	0	1
ZSCAN18	65982	broad.mit.edu	37	19	58600183	58600183	+	Missense_Mutation	SNP	G	G	A	rs73058515	unknown;alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZSCAN18-90	NM_001145542	exon3	c.C593T	p.A198V	GAGCCCGCAGGGG	.	89	45	43	2	G|1.000;T|0.000	6	3	3	0	0	1
FOSL2	2355	ucsc.edu;bcgsc.ca	37	2	28627094	28627094	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FOSL2-712	NM_005253	exon2	c.C223A	p.P75T	TCCAACCCATACC	.	190	166	190	2	.	5	1	4	0	0	2
SCG2	7857	ucsc.edu	37	2	224462285	224462285	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCG2-69	NM_003469	exon2	c.G1716C	p.G572G	CGGGGGCCCCACA	.	15	1	30	0	.	20	16	4	0	0	1
CTSA	5476	broad.mit.edu	37	20	44526395	44526395	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTSA-91	NM_000308	exon13	c.G1258A	p.A420T	GACATGGCCTGCA	.	122	5	154	0	.	431	417	14	0	0	1
PRMT2	3275	broad.mit.edu;bcgsc.ca	37	21	48068519	48068519	+	Silent	SNP	G	G	A	rs150978784	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRMT2-91	NM_001242864	exon5	c.G477A	p.A159A	CTATGCGCGGCCT	.	90	5	112	0	G|0.999;A|0.001	18	16	2	0	0	2
NR2F1	7025	bcgsc.ca	37	5	92924033	92924033	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NR2F1-227	NM_005654	exon2	c.G874A	p.V292I	GACCGCGTCGTGG	.	207	101	53	2	.	2	0	2	0	0	1
SYNGAP1	8831	broad.mit.edu;bcgsc.ca	37	6	33415649	33415649	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SYNGAP1-48	NM_006772	exon18	c.G3824A	p.R1275Q	TGCGCCGGGACCA	.	161	71	70	2	.	3	1	2	0	0	2
KIFC2	90990	hgsc.bcm.edu	37	8	145697835	145697835	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIFC2-92	NM_145754	exon15	c.T1699C	p.W567R	ACCCACTGGGACG	.	135	82	7	0	.	70	21	49	0	0	1
MAMDC4	158056	hgsc.bcm.edu;bcgsc.ca	37	9	139748110	139748110	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAMDC4-156	NM_206920	exon4	c.G442A	p.A148T	TACCACGCGGCCT	.	136	131	7	0	.	3	0	3	0	0	2
FLNA	2316	bcgsc.ca	37	X	153595114	153595114	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FLNA-599	NM_001456	exon6	c.G973A	p.G325R	GGTGTCCGGCCGG	.	126	117	43	2	.	4	0	4	0	0	1
TRIM58	25893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248039251	248039251	+	Silent	SNP	C	C	T	rs201527424	unknown;alternate_allele	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRIM58-96	NM_015431	exon6	c.C921T	p.T307T	CTTGACCGCCGAC	.	126	35	94	0	C|1.000;G|0.000	0	0	0	0	0	5
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	55582281	55582281	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH15-193	NM_001142763	exon35	c.C5226T	p.A1742A	TGGATGGGCAAAA	.	45	10	49	0	.	0	0	0	0	0	4
PTPRE	5791	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	129839226	129839226	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPRE-227	NM_006504	exon3	c.C81T	p.A27A	CACTGCCGACAGC	.	168	9	183	0	.	0	0	0	0	0	3
CTSD	1509	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1778638	1778638	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTSD-90	NM_001909	exon5	c.C620T	p.S207F	TTGACGGAGATGC	.	251	25	146	0	.	1982	1770	210	0	2	3
EFCAB4B	84766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	3805999	3805999	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EFCAB4B-92	NM_001144958	exon4	c.A167T	p.Q56L	AACTCCTGTGCCT	.	138	33	103	0	.	0	0	0	0	0	5
BCAT1	586	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	24989464	24989464	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BCAT1-522	NM_001178093	exon8	c.T920C	p.L307P	AGGTCCAGAATGC	.	88	15	66	0	.	2	2	0	0	0	3
GTSF1	121355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54854183	54854183	+	Silent	SNP	C	C	A	rs148431190	unknown;alternate_allele	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GTSF1-90	NM_144594	exon7	c.G465T	p.P155P	AACATACGGCAGA	.	146	29	83	0	C|1.000;T|0.000	0	0	0	0	0	5
NAP1L1	4673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	76447086	76447086	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NAP1L1-92	NM_004537	exon10	c.C815G	p.T272S	TTAATAGTTTTCA	.	189	11	135	0	.	486	428	58	0	0	4
AHNAK2	113146	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105417098	105417098	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AHNAK2-47	NM_138420	exon7	c.G4690A	p.G1564S	CAGGGCCCTCTGG	.	159	48	157	0	.	0	0	0	0	0	4
PKD1L2	114780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	81232405	81232405	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKD1L2-92	NM_001076780	exon7	c.T1405C	p.L469L	TGATCAATAGGTC	.	174	50	147	0	.	0	0	0	0	0	5
G6PC3	92579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42153148	42153148	+	Missense_Mutation	SNP	G	G	A	rs200478425	unknown;alternate_allele	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	G6PC3-91	NM_138387	exon6	c.G778A	p.G260S	GCCCTGGGCCTGG	.	80	18	51	0	.	139	100	39	0	0	5
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42841342	42841342	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MEGF8-23	NM_001271938	exon8	c.G1497A	p.P499P	TGCCCCGCCAGGA	.	122	27	82	0	.	2	2	0	0	0	5
ZNF813	126017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53994970	53994970	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF813-67	NM_001004301	exon4	c.A1484G	p.Y495C	AACCTTACAAGTG	.	230	42	184	0	.	51	51	0	0	0	5
SH3RF3	344558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	110053528	110053528	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SH3RF3-24	NM_001099289	exon7	c.C1754G	p.S585W	CAGCCTCGCCCCC	.	259	53	26	0	.	3	2	1	0	0	5
TMEM177	80775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	120439176	120439176	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM177-91	NM_001105198	exon2	c.C747G	p.F249L	GGAGTTCTATGAG	.	170	30	132	0	.	7	5	2	0	0	5
MUC13	56667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	124629329	124629329	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUC13-90	NM_033049	exon10	c.A1267G	p.T423A	CAATAGTGAGGAT	.	143	35	226	0	.	0	0	0	0	0	5
ADAMTS3	9508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	73280551	73280551	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS3-651	NM_014243	exon4	c.C642G	p.S214S	GTCTTTGGACATG	.	97	17	98	0	.	0	0	0	0	0	5
ANAPC10	10393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	145916557	145916557	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANAPC10-650	NM_001256709	exon7	c.A559G	p.I187V	AATCTATAGTTGT	.	47	12	59	0	.	14	8	6	0	0	5
OTP	23440	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	76932656	76932656	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OTP-69	NM_032109	exon2	c.C437G	p.S146C	ACTCGGGACTCGG	.	218	45	149	2	.	0	0	0	0	0	4
ADAMTS19	171019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	128864313	128864313	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS19-295	NM_133638	exon6	c.T1253A	p.M418K	TAGAGATGTCAAC	.	173	30	143	0	.	0	0	0	0	0	5
GLRA1	2741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	151231120	151231120	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GLRA1-91	NM_000171	exon7	c.T743A	p.M248K	TAACCCATCTGCC	.	264	60	173	0	.	0	0	0	0	0	5
HIST1H1E	3008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	26157045	26157045	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIST1H1E-154	NM_005321	exon1	c.G427T	p.G143W	GCGACGGGGGCGG	.	138	37	51	0	.	0	0	0	0	0	4
POLR1C	9533	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	43485110	43485110	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POLR1C-90	NM_203290	exon2	c.G136A	p.E46K	CGCTTCGAGAAGG	.	154	8	87	0	.	0	0	0	0	0	3
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	160453715	160453715	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGF2R-118	NM_000876	exon8	c.A1015G	p.I339V	GTCTCCATAGACC	.	119	18	52	0	.	17	8	9	0	0	4
LRRN3	54674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	110764308	110764308	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRN3-154	NM_018334	exon2	c.T1480C	p.Y494H	GGTTTATATACTT	.	196	35	162	0	.	1	1	0	0	0	5
CAPZA2	830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116557779	116557779	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CAPZA2-514	NM_006136	exon10	c.721-2A>G	.	TTTCATAGACTGC	.	116	26	75	0	.	0	0	0	0	0	4
ASPH	444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	62596612	62596612	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASPH-93	NM_001164754	exon2	c.A239G	p.Y80C	TCCTCATAGTCAA	.	54	10	37	0	.	35	27	8	0	0	4
CNBD1	168975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87917323	87917323	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNBD1-3	NM_173538	exon3	c.A173G	p.N58S	TGAGCAATATCTT	.	69	17	68	0	.	0	0	0	0	0	5
C9orf171	389799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135447854	135447854	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C9orf171-157	NM_207417	exon7	c.T920C	p.V307A	GTGCCGTGCGCCA	.	43	15	33	0	.	0	0	0	0	0	5
CDKL5	6792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	18631388	18631388	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDKL5-838	NM_003159	exon15	c.G2269T	p.D757Y	GCATTCGATCCAT	.	253	43	259	0	.	0	0	0	0	0	5
SH3KBP1	30011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	19587243	19587243	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SH3KBP1-130	NM_031892	exon13	c.C1362T	p.L454L	GTCCGAGAGATCT	.	142	33	109	0	.	7	3	4	0	0	5
NCOR2	9612	hgsc.bcm.edu;broad.mit.edu	37	12	124887093	124887093	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NCOR2-229	NM_006312	exon16	c.G1497A	p.Q499Q	CTGCTGCTGTTGT	.	52	4	28	0	.	21	5	16	0	0	2
CARS2	79587	ucsc.edu	37	13	111340101	111340101	+	Missense_Mutation	SNP	T	T	C	rs72661692	byfrequency;alternate_allele	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CARS2-90	NM_024537	exon5	c.A538G	p.I180V	GAGCAATGATTCC	.	84	13	75	1	T|0.929;A|0.071	48	36	12	0	0	1
TPST2	8459	broad.mit.edu	37	22	26937214	26937214	+	Missense_Mutation	SNP	A	A	C	rs200758682	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TPST2-90	NM_001008566	exon3	c.T383G	p.V128G	TCCGTCACCCCCG	.	73	21	16	1	.	22	19	3	0	0	1
PCDHB6	56130	broad.mit.edu	37	5	140531248	140531248	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB6-91	NM_018939	exon1	c.C1410T	p.S470S	CGGCAGCGTCAGC	.	303	17	67	0	.	14	7	7	0	0	1
COX1	5742	broad.mit.edu	37	MT	6103	6103	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361624	exon1	c.T200C	p.F67S	TAATCTTCTTCAT	.	38	18	10	0	.	20690	15077	5609	2	2	1
CTBS	1486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	85036384	85036384	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTBS-90	NM_004388	exon2	c.G197A	p.G66E	TTCTGTCCAACAT	.	76	11	104	0	.	13	11	2	0	0	4
PDE4DIP	9659	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	144930794	144930794	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDE4DIP-663	NM_001002811	exon1	c.C915G	p.S305R	TCGGGGGCTCTGG	.	256	48	229	1	.	4	4	0	0	0	3
ATF6	22926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161761234	161761234	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATF6-93	NM_007348	exon5	c.C391G	p.P131A	ATGTCTCCCCTTT	.	59	29	64	0	.	16	4	12	0	0	5
SLC35F3	148641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	234444906	234444906	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC35F3-92	NM_173508	exon4	c.C668A	p.A223E	CCAAGGCAGCACC	.	110	24	106	0	.	0	0	0	0	0	5
ITIH5	80760	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	7618777	7618777	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITIH5-92	NM_001001851	exon10	c.C1617G	p.I539M	CAGGATGATGAAT	.	205	23	194	1	.	4	4	0	0	0	3
HNRNPF	3185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43882457	43882457	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HNRNPF-22	NM_001098204	exon4	c.C876G	p.H292Q	CCTCATGTGGACA	.	83	17	127	0	.	150	118	31	0	1	5
SFXN4	119559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	120923681	120923681	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SFXN4-91	NM_213649	exon2	c.A139T	p.T47S	ATTCTGTCCATTG	.	358	108	224	0	.	54	33	21	0	0	5
PRDX3	10935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	120931958	120931958	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRDX3-90	NM_006793	exon5	c.G487C	p.D163H	TTAAGTCTGACAA	.	198	64	213	0	.	1294	824	470	0	0	5
CCDC73	493860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	32635661	32635661	+	Silent	SNP	T	T	G	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC73-91	NM_001008391	exon16	c.C2203C	p.L735L	CCAACATAGACAT	.	51	17	40	0	.	0	0	0	0	0	5
NR1H3	10062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47282859	47282859	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NR1H3-228	NM_001251934	exon5	c.C585T	p.A195A	TCATGCCACATCC	.	204	128	210	0	.	10	6	4	0	0	5
PAN2	9924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56712211	56712211	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAN2-702	NM_001127460	exon25	c.G3384T	p.K1128N	TTGAATCTTCAGG	.	371	59	281	0	.	2	2	0	0	0	5
GAS2L3	283431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	101017613	101017613	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GAS2L3-227	NM_174942	exon10	c.G1030C	p.E344Q	AGCAAAGAAAAAC	.	154	45	86	0	.	9	6	3	0	0	5
WBP4	11193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	41642838	41642838	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WBP4-289	NM_007187	exon5	c.A404C	p.E135A	CCTCTGAGGGTTA	.	16	11	69	0	.	3	1	2	0	0	5
SERPINA1	5265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	94845822	94845822	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SERPINA1-226	NM_001127701	exon6	c.G1044A	p.E348E	GGGTGCCTCCTCT	.	92	37	131	0	.	2	2	0	0	0	5
MAGEL2	54551	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	23890728	23890728	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_019066	exon1	c.G2162A	p.C721Y	GCCCTGCATTCTC	.	93	35	97	1	.	0	0	0	0	0	3
DECR2	26063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	455024	455024	+	Missense_Mutation	SNP	G	G	A	rs201409624	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DECR2-90	NM_020664	exon2	c.G149A	p.R50Q	TCATGCGGTGAGA	.	105	18	127	0	G|0.999;A|0.000	6	1	5	0	0	4
DSG1	1828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	28918353	28918353	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DSG1-519	NM_001942	exon10	c.A1341G	p.K447K	AAATAAAGTTACC	.	273	112	311	1	.	0	0	0	0	0	4
MEX3C	51320	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	18	48723211	48723211	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MEX3C-659	NM_016626	exon1	c.G480C	p.G160G	CAGGGACCCGCCC	.	32	16	21	0	.	0	0	0	0	0	3
FBN3	84467	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8156470	8156470	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBN3-100	NM_032447	exon47	c.C5910T	p.I1970I	CTCGTCGATATCT	.	97	24	106	1	.	0	0	0	0	0	4
C19orf44	84167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16611629	16611629	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C19orf44-90	NM_032207	exon2	c.G26A	p.R9H	CCAGCCGTCCCAT	.	164	33	117	0	.	0	0	0	0	0	5
SCGB2B2	284402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35085180	35085180	+	Missense_Mutation	SNP	C	C	T	rs142177025	byfrequency;alternate_allele	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001025591	exon2	c.G146A	p.R49H	TTGTAACGAGCAA	.	188	41	218	0	C|1.000;A|0.000	0	0	0	0	0	5
WDR87	83889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38375577	38375577	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_031951	exon6	c.C8617T	p.L2873F	ATTAGAGAGTGGG	.	252	48	224	0	.	0	0	0	0	0	5
SULT2B1	6820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49079309	49079309	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SULT2B1-91	NM_177973	exon2	c.C183T	p.D61D	GGACGACGACATC	.	75	13	78	0	.	0	0	0	0	0	4
TARM1	441864	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54578299	54578299	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001135686	exon3	c.G138A	p.T46T	TCGCAGCGTCACA	.	126	29	91	1	.	0	0	0	0	0	4
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179569656	179569656	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_001267550	exon104	c.A29642T	p.K9881M	AATTCCTTTTCGT	.	84	29	93	0	.	0	0	0	0	0	5
SP140	11262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	231103027	231103027	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SP140-90	NM_007237	exon3	c.G337A	p.A113T	CTGGAAGCATTGT	.	363	87	257	0	.	1	1	0	0	0	5
MYEOV2	150678	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	241075689	241075689	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYEOV2-68	NM_138336	exon1	c.76delG	p.V26fs	CGTCCACCGCCGG	.	87	30	24	0	.	0	0	0	0	0	3
SLC24A3	57419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	19665891	19665891	+	Missense_Mutation	SNP	G	G	T	rs140841773	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC24A3-91	NM_020689	exon12	c.G1210T	p.V404L	GATGTTGTGGCTG	.	108	40	187	0	G|1.000;T|0.000	5	4	1	0	0	5
URB1	9875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33717002	33717002	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_014825	exon24	c.G4134C	p.W1378C	CCTTCTCCAGGCA	.	57	19	70	0	.	2	1	1	0	0	5
CECR2	27443	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	17983977	17983977	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CECR2-70	.	.	.	.	TCCCTTCGAGAAC	.	46	38	103	0	.	0	0	0	0	0	4
MICALL1	85377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38307969	38307969	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MICALL1-153	NM_033386	exon2	c.T157A	p.S53T	TTTGATTCGCTTT	.	253	65	248	0	.	0	0	0	0	0	5
MICALL1	85377	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38307970	38307970	+	Missense_Mutation	SNP	C	C	T	rs201864925	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MICALL1-153	NM_033386	exon2	c.C158T	p.S53L	TTGATTCGCTTTC	.	259	68	252	2	C|0.999;T|0.001	0	0	0	0	0	4
SCO2	9997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50962186	50962186	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCO2-226	NM_001169111	exon2	c.G655T	p.D219Y	TGTAGTCCTGGTC	.	83	14	253	0	.	26	21	5	0	0	4
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	4715039	4715039	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITPR1-710	NM_001099952	exon21	c.G2424C	p.W808C	CCTCTGGTCGGAG	.	74	30	122	0	.	1	0	1	0	0	5
BRPF1	7862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9780990	9780990	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BRPF1-92	NM_001003694	exon3	c.G907C	p.E303Q	CACCAGGAGTGCT	.	202	65	260	0	.	8	6	2	0	0	5
BRPF1	7862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9787330	9787330	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BRPF1-92	NM_001003694	exon11	c.G3142C	p.D1048H	AGTGAGGATACCT	.	173	50	191	0	.	22	9	13	0	0	5
OGG1	4968	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9792837	9792837	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OGG1-660	NM_016819	exon2	c.G346A	p.V116M	GGTTCCGTGGACT	.	196	55	232	1	.	16	8	8	0	0	4
GOLGA4	2803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	37368506	37368506	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GOLGA4-93	NM_001172713	exon15	c.G5195T	p.R1732I	TACCCAGATCAGC	.	146	56	80	0	.	98	82	15	1	0	5
XIRP1	165904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	39227962	39227962	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	XIRP1-158	NM_001198621	exon2	c.C2975T	p.P992L	GGGCAAGGGGTGG	.	44	19	81	0	.	0	0	0	0	0	5
HRG	3273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	186386808	186386808	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HRG-91	NM_000412	exon2	c.G268C	p.E90Q	GACTGTGAGCCAC	.	122	19	169	0	.	0	0	0	0	0	4
PRMT10	90826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	148605040	148605040	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRMT10-91	NM_138364	exon1	c.G99A	p.E33E	ACAGTGCTCTGCG	.	108	35	161	0	.	2	2	0	0	0	5
FBXO8	26269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	175184113	175184113	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXO8-290	NM_012180	exon2	c.G131A	p.R44H	TGTTTACGATGAT	.	195	73	311	1	.	34	18	16	0	0	5
SLC6A19	340024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1214090	1214090	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC6A19-90	NM_001003841	exon6	c.A797G	p.D266G	AGCCGGACACCTG	.	58	14	73	0	.	0	0	0	0	0	4
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13753560	13753560	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH5-182	NM_001369	exon63	c.G10654T	p.A3552S	TCCGGGCTTTCAT	.	140	37	78	0	.	1	1	0	0	0	5
ANKRD55	79722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	55439737	55439737	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD55-91	NM_024669	exon7	c.G503A	p.W168X	GCCGCCCAGTGGA	.	108	23	117	0	.	0	0	0	0	0	5
HMMR	3161	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	162911139	162911139	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HMMR-90	NM_001142556	exon16	c.A1850G	p.E617G	CTCAGGAACAGCT	.	257	87	159	1	.	10	9	1	0	0	4
MDC1	9656	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	30670918	30670918	+	Missense_Mutation	SNP	C	C	T	rs148600920	byfrequency	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MDC1-273	NM_014641	exon12	c.G5828A	p.R1943Q	ATTCCCCGCCCCA	.	224	20	234	0	C|0.999;T|0.001	31	27	4	0	0	3
BAI3	577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	69665933	69665933	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BAI3-1148	NM_001704	exon7	c.G1213C	p.E405Q	TGGCAAGAGTGGA	.	69	16	102	0	.	0	0	0	0	0	5
HTR5A	3361	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	154862761	154862761	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HTR5A-155	NM_024012	exon1	c.152delT	p.V51fs	TTCTGGTGGCGGC	.	66	19	94	0	.	0	0	0	0	0	3
PKHD1L1	93035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110520019	110520019	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKHD1L1-145	NM_177531	exon69	c.G11122T	p.D3708Y	GAATGGGACGGAA	.	189	73	257	1	.	0	0	0	0	0	4
WDR44	54521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	117570692	117570692	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDR44-133	NM_001184965	exon14	c.G1879C	p.D627H	TCAATGGATAAAA	.	157	70	159	0	.	2	1	1	0	0	5
PIK3C3	5289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	39637866	39637867	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIK3C3-1312	NM_002647	exon22	c.2283_2284insT	p.D761fs	CATAGACTTTGGA	.	47	12	76	0	.	0	0	0	0	0	3
HADHA	3030	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	26418025	26418026	+	In_Frame_Ins	INS	-	-	TGGAAA	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HADHA-91	NM_000182	exon15	c.1556_1557insTTTCCA	p.K519delinsISK	GTGTCTTTGGAAG	.	151	23	211	0	.	0	0	0	0	0	3
NBPF10	100132406	bcgsc.ca	37	1	145296403	145296403	+	Silent	SNP	C	C	T	rs4996269	byfrequency	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001039703	exon3	c.C325T	p.L109L	ACCCAGCTAAGGG	.	197	13	216	0	C|0.959;T|0.041	99	1	98	0	0	1
NBPF10	100132406	broad.mit.edu	37	1	145296448	145296448	+	Missense_Mutation	SNP	T	T	A	rs78828650	byfrequency	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001039703	exon3	c.T370A	p.Y124N	TCATTGTATGAGC	.	231	18	244	1	T|0.750;A|0.250	71	1	70	0	0	1
FBXW10	10517	ucsc.edu	37	17	18682505	18682505	+	Missense_Mutation	SNP	T	T	C	rs117160613	byfrequency	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXW10-91	NM_001267585	exon14	c.T3053C	p.V1018A	GAAAAGTCAGCAA	.	75	11	407	0	T|0.777;C|0.223	5	0	5	0	0	1
LTBP1	4052	ucsc.edu	37	2	33500091	33500091	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LTBP1-230	NM_206943	exon17	c.G2803A	p.E935K	AACACCGAGGGAA	.	83	12	113	2	.	17	14	3	0	0	1
KCNQ4	9132	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	41296756	41296756	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNQ4-90	NM_004700	exon10	c.C1293G	p.S431R	TGCCAGCAGCCGG	.	137	77	133	0	.	0	0	0	0	0	4
ATP5F1	515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	111999313	111999313	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP5F1-90	NM_001688	exon5	c.T449C	p.I150T	ATGCAATTGATAC	.	342	208	355	2	.	207	52	155	0	0	4
TRIM33	51592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114948141	114948141	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRIM33-1351	NM_033020	exon15	c.G2659T	p.E887X	AGTCTTCATTTGG	.	116	77	120	0	.	0	0	0	0	0	5
HHIPL2	79802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	222713605	222713605	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HHIPL2-69	NM_024746	exon4	c.G1197T	p.S399S	ATTGTCCGAGGGG	.	100	11	118	0	.	0	0	0	0	0	4
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228505189	228505189	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OBSCN-403	NM_001271223	exon63	c.C16457G	p.A5486G	AGGATGCTGAGGT	.	107	19	114	0	.	0	0	0	0	0	5
SIPA1L2	57568	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	232615375	232615375	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SIPA1L2-95	NM_020808	exon5	c.C2083A	p.Q695K	ATACCTGTTGTCT	.	176	14	156	0	.	0	0	0	0	0	3
NRAP	4892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	115364490	115364490	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NRAP-522	NM_001261463	exon35	c.G4105T	p.A1369S	TCTTGGCATGGAC	.	102	14	113	0	.	0	0	0	0	0	4
JAKMIP3	282973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	133930934	133930934	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	JAKMIP3-23	NM_001105521	exon2	c.C489T	p.G163G	CAAGGGCGCCAAA	.	206	127	198	1	.	0	0	0	0	0	4
LDHC	3948	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	18451364	18451364	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LDHC-226	NM_002301	exon4	c.C325T	p.L109L	CTTGCCCTGGTCC	.	87	7	97	0	.	0	0	0	0	0	3
OR1S2	219958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57970736	57970736	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR1S2-69	NM_001004459	exon1	c.G918T	p.R306S	CTTATTCCTCAAG	.	184	51	201	0	.	0	0	0	0	0	5
DHCR7	1717	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	71149950	71149950	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DHCR7-228	NM_001163817	exon7	c.C806T	p.A269V	ACCATGGCATTGG	.	60	9	116	1	.	2	2	0	0	0	3
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	92532969	92532969	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAT3-73	NM_001008781	exon9	c.C6790A	p.L2264I	GACGCCCTTACTG	.	136	19	158	0	.	0	0	0	0	0	4
KDM2B	84678	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	121882310	121882310	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KDM2B-638	NM_032590	exon15	c.C2133G	p.D711E	AAGCTCGTCGTTG	.	154	30	118	1	.	6	2	4	0	0	4
TMEM132D	121256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	129558465	129558465	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM132D-106	NM_133448	exon9	c.C3255A	p.C1085X	CTCTTTGCAGTCC	.	188	77	134	0	.	0	0	0	0	0	5
SSTR1	6751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	38679240	38679240	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SSTR1-947	NM_001049	exon3	c.G646A	p.A216T	GAGCCCGCTCAAC	.	97	11	116	0	.	0	0	0	0	0	4
FOXN3	1112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	89817135	89817135	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FOXN3-229	NM_005197	exon3	c.G561C	p.S187S	CCACAACGACCCT	.	85	32	90	0	.	1	1	0	0	0	5
CCDC88C	440193	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	91739504	91739504	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC88C-25	NM_001080414	exon30	c.C5552T	p.P1851L	GAGCTGGGGGGTG	.	44	7	40	0	.	4	4	0	0	0	3
BEGAIN	57596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	101011366	101011366	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BEGAIN-68	NM_020836	exon4	c.C214T	p.Q72X	GCTCCTGGTTGAT	.	58	12	60	0	.	2	2	0	0	0	4
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	33962729	33962729	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RYR3-520	NM_001243996	exon38	c.G5832T	p.Q1944H	GGAGCAGCCGACG	.	77	12	79	0	.	0	0	0	0	0	4
PLA2G4E	123745	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	42297141	42297141	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001206670	exon5	c.G561T	p.E187D	CCTCTCCTCCAGC	.	149	12	159	0	.	0	0	0	0	0	3
SLC30A4	7782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	45814279	45814279	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC30A4-90	NM_013309	exon2	c.G274C	p.V92L	AGTCCACCTTCAA	.	175	106	166	1	.	3	0	3	0	0	4
DMXL2	23312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	51755647	51755647	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DMXL2-99	NM_001174116	exon33	c.C7855T	p.L2619F	TAACAAGGAAATG	.	153	101	124	0	.	5	2	3	0	0	5
CHD2	1106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	93522377	93522377	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHD2-229	NM_001271	exon22	c.C2740T	p.R914C	ATTTACCGCTTAG	.	57	6	57	0	.	0	0	0	0	0	4
DNAH3	55567	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	20974923	20974923	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH3-167	NM_017539	exon53	c.C10283A	p.A3428D	GGTAAGGCAGATG	.	101	17	107	1	.	1	0	1	0	0	3
CHD9	80205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	53326859	53326859	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHD9-272	NM_025134	exon29	c.A5405G	p.Q1802R	AAATTCAGCAGAT	.	152	20	170	0	.	2	2	0	0	0	4
TANGO6	79613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	69007975	69007975	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_024562	exon15	c.G2746T	p.D916Y	TTGCCGGACTTGT	.	181	116	181	1	.	6	1	5	0	0	4
CMC2	56942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	81015457	81015457	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_020188	exon3	c.A107G	p.Y36C	TTACAATAACCAA	.	86	14	80	0	.	113	87	26	0	0	4
SGSM2	9905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	2280076	2280076	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SGSM2-68	NM_014853	exon20	c.C2659A	p.L887M	TGCGATCTGCTGG	.	101	10	78	0	.	16	16	0	0	0	4
SGSM2	9905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	2280078	2280078	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SGSM2-68	NM_014853	exon20	c.G2661T	p.L887L	CGATCTGCTGGCG	.	101	10	76	0	.	17	17	0	0	0	4
SPNS2	124976	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4436414	4436414	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPNS2-68	NM_001124758	exon7	c.G1078T	p.A360S	TGTGGGGCCAAGG	.	75	8	60	1	.	0	0	0	0	0	3
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7579312	7579312	+	Silent	SNP	C	C	A	rs55863639	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TP53-70225	NM_000546	exon4	c.G375T	p.T125T	ACTGACCGTGCAA	.	193	118	141	0	.	10	0	10	0	0	5
WDR16	146845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	9542007	9542007	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDR16-71	NM_145054	exon12	c.C1554A	p.I518I	GATCATCACCAGC	.	111	69	106	0	.	0	0	0	0	0	5
KRT17	3872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39780559	39780559	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRT17-92	NM_000422	exon1	c.G203T	p.G68V	CCATAGCCACCAC	.	343	39	215	0	.	0	0	0	0	0	4
ABCC3	8714	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	48746781	48746781	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCC3-93	NM_003786	exon17	c.C2133A	p.F711L	GCTTTTCGGCAAA	.	141	12	105	0	.	0	0	0	0	0	3
APPBP2	10513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	58525008	58525008	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	APPBP2-226	NM_006380	exon13	c.C1692T	p.P564P	GGACTGGGGGCTG	.	150	18	102	0	.	24	23	1	0	0	4
EVPL	2125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74003739	74003739	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EVPL-93	NM_001988	exon22	c.G5547T	p.M1849I	GTCCAGCATGTTC	.	81	22	79	0	.	0	0	0	0	0	5
GREB1L	80000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	19053018	19053018	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001142966	exon16	c.G2209T	p.E737X	CTGGAGGAAAATG	.	184	50	143	0	.	0	0	0	0	0	5
ZNF236	7776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	74637402	74637402	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF236-94	NM_007345	exon22	c.G3913C	p.D1305H	TCTACTGACCCAA	.	160	19	143	0	.	0	0	0	0	0	4
HSPBP1	23640	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	55785775	55785775	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HSPBP1-90	NM_012267	exon4	c.G631T	p.A211S	AGATGGCGAAGAG	.	37	20	13	0	.	0	0	0	0	0	3
ALK	238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	29754831	29754831	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALK-3833	NM_004304	exon4	c.C1104T	p.H368H	CTCGTTGTGGGGC	.	158	19	160	0	.	0	0	0	0	0	4
AMER3	205147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	131519854	131519854	+	Missense_Mutation	SNP	C	C	T	rs200636300	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_152698	exon2	c.C209T	p.A70V	AAGGGGCGCAGCT	.	75	45	84	0	.	0	0	0	0	0	5
NEB	4703	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	152484133	152484133	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NEB-145	NM_001271208	exon69	c.C10047A	p.S3349R	CACATCGCTGACT	.	373	32	304	0	.	0	0	0	0	0	3
KCNH7	90134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	163693261	163693261	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNH7-95	NM_033272	exon2	c.T93G	p.I31M	ATTTGCAATGATA	.	61	41	64	0	.	0	0	0	0	0	5
HECW2	57520	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	197122592	197122592	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HECW2-668	NM_020760	exon18	c.G3374T	p.G1125V	ACCAATCCTGGAG	.	116	9	93	0	.	0	0	0	0	0	3
SF3B1	23451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198281581	198281581	+	Missense_Mutation	SNP	C	C	A	rs139823279	unknown;alternate_allele	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SF3B1-140	NM_012433	exon6	c.G550T	p.V184F	CATTGACGACTTT	.	60	35	81	0	C|1.000;T|0.000	19	2	17	0	0	5
ADAM23	8745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207454139	207454139	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAM23-228	NM_003812	exon21	c.C1859A	p.A620E	AGGCTGCAGGGTC	.	66	47	73	0	.	0	0	0	0	0	5
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	215866333	215866333	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCA12-99	NM_173076	exon21	c.G2812T	p.E938X	CCATTTCATCTAT	.	116	7	125	0	.	0	0	0	0	0	3
SMARCAL1	50485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	217332761	217332761	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMARCAL1-293	NM_014140	exon14	c.G2236T	p.E746X	GAGCTTGAGAGAA	.	70	49	69	0	.	0	0	0	0	0	5
PPP1R7	5510	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	242092956	242092956	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPP1R7-660	NM_002712	exon2	c.G118A	p.V40M	GGCATCGTGGCCG	.	185	10	125	0	.	78	69	9	0	0	3
SMOX	54498	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	4168035	4168035	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMOX-153	NM_001270691	exon8	c.T1739C	p.L580P	GAGACCTCTTCCA	.	172	13	166	1	.	53	42	11	0	0	3
RBM12	10137	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	34241123	34241123	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBM12-93	NM_001198840	exon2	c.C2122A	p.L708M	CAGTCAGGAAGGC	.	83	7	83	0	.	20	20	0	0	0	3
LAMA5	3911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60900600	60900600	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LAMA5-93	NM_005560	exon41	c.G5301T	p.G1767G	GAAGTTCCCCTGT	.	197	42	166	0	.	0	0	0	0	0	5
BTD	686	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	15683552	15683552	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BTD-90	NM_000060	exon3	c.C447A	p.F149L	CCGCTTCAATGAC	.	115	26	105	1	.	14	11	3	0	0	3
DLEC1	9940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38105387	38105387	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DLEC1-161	NM_007337	exon6	c.T1150C	p.Y384H	ACAGATTATGAAA	.	110	17	102	0	.	0	0	0	0	0	4
RUVBL1	8607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	127842496	127842496	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RUVBL1-227	NM_003707	exon1	c.G72T	p.L24L	CAGCCCCAGCCCT	.	104	12	66	0	.	20	19	1	0	0	4
HLTF	6596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	148763946	148763946	+	Missense_Mutation	SNP	T	T	A	rs137866464	unknown;alternate_allele	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HLTF-659	NM_139048	exon18	c.A1993T	p.I665F	GCTGAATAAATAC	.	121	83	119	0	T|1.000;C|0.000	4	0	4	0	0	5
CLDN1	9076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	190039777	190039777	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLDN1-91	NM_021101	exon1	c.G219T	p.L73L	ACTGCTCAGATTC	.	130	72	113	0	.	0	0	0	0	0	5
NUDT9	53343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	88372877	88372877	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NUDT9-90	NM_024047	exon6	c.A779T	p.D260V	GCCAAGACCACCT	.	48	35	58	0	.	0	0	0	0	0	5
GSTCD	79807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	106746955	106746955	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GSTCD-92	NM_001031720	exon8	c.G1528T	p.G510X	AATATTGGAGTAA	.	81	48	121	0	.	0	0	0	0	0	5
ENPEP	2028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	111470691	111470691	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ENPEP-157	NM_001977	exon16	c.C2233A	p.R745S	TTACTCCGTTCCT	.	108	33	120	0	.	0	0	0	0	0	5
ANP32C	23520	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	165118218	165118218	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANP32C-90	NM_012403	exon1	c.G646T	p.D216Y	CGCCATCTACCTC	.	142	21	148	0	.	0	0	0	0	0	3
EXOC3	11336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	446342	446342	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EXOC3-90	NM_007277	exon2	c.G22C	p.A8P	CGGGAGGCCGTTG	.	165	12	101	0	.	4	4	0	0	0	3
SPEF2	79925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	35644627	35644627	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPEF2-26	NM_024867	exon4	c.G585T	p.K195N	TGAAAAGGTTCTA	.	173	50	122	0	.	0	0	0	0	0	5
ZSWIM6	57688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	60831349	60831349	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_020928	exon10	c.G2284C	p.E762Q	CATCGGGAGAGCG	.	212	102	206	0	.	3	2	1	0	0	5
SLCO6A1	133482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	101755672	101755672	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLCO6A1-96	NM_173488	exon8	c.G1330T	p.V444F	TGGAAACAATGAC	.	126	53	139	0	.	0	0	0	0	0	5
KCTD16	57528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	143586513	143586513	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCTD16-137	NM_020768	exon3	c.G236T	p.G79V	GAGATGGATTCTT	.	127	20	135	0	.	0	0	0	0	0	4
KIAA0319	9856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	24581184	24581184	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA0319-92	NM_001168377	exon7	c.G1249T	p.E417X	ATCCTTCTCCAAA	.	50	9	72	0	.	0	0	0	0	0	4
TTBK1	84630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43230667	43230667	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTBK1-353	NM_032538	exon13	c.C1565T	p.A522V	AGGAGGCCCTGAG	.	423	72	351	0	.	0	0	0	0	0	5
SENP6	26054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	76423518	76423518	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SENP6-660	NM_015571	exon23	c.C3106T	p.Q1036X	GTATTGCAGTATG	.	75	7	56	0	.	16	12	4	0	0	4
TSPYL4	23270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	116574092	116574092	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_021648	exon1	c.C1080G	p.D360E	GCTGTGGTCTGAA	.	124	12	115	0	.	2	2	0	0	0	4
GPR126	57211	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	142729367	142729367	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR126-91	NM_198569	exon16	c.G2349T	p.K783N	TCTGAAGGATCCT	.	257	15	198	0	.	0	0	0	0	0	3
TULP4	56995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	158900810	158900810	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TULP4-91	NM_020245	exon7	c.C1054A	p.H352N	TGGGGTCACCGGG	.	103	37	69	0	.	0	0	0	0	0	5
TWISTNB	221830	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	19738103	19738103	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TWISTNB-91	NM_001002926	exon4	c.C853A	p.Q285K	CTTCCTGGTGCTT	.	94	5	46	0	.	8	6	2	0	0	3
GPNMB	10457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	23296587	23296587	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPNMB-580	NM_002510	exon4	c.C444T	p.T148T	TGGCACCGGCCAA	.	317	135	225	0	.	239	124	115	0	0	5
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	47930172	47930172	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKD1L1-145	NM_138295	exon16	c.G2643T	p.V881V	CAGGAACACCCGG	.	139	11	88	0	.	0	0	0	0	0	3
PHTF2	57157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	77579101	77579101	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHTF2-23	NM_001127357	exon15	c.C1964A	p.S655X	TTGGATCAGAAAC	.	167	9	114	0	.	1	1	0	0	0	3
NPTX2	4885	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	98256610	98256610	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NPTX2-515	NM_002523	exon4	c.G1022A	p.W341X	CCCCCTGGCACCC	.	178	17	105	0	.	6	5	1	0	0	3
ZNF277	11179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	111982631	111982631	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF277-155	NM_021994	exon12	c.C1200A	p.T400T	TCCAACCTATGAA	.	93	37	67	0	.	27	21	6	0	0	5
EXOC4	60412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	133692487	133692487	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EXOC4-159	NM_021807	exon17	c.C2586A	p.I862I	GCGCATCAGTGAG	.	151	44	108	0	.	10	5	5	0	0	5
TAS2R40	259286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	142919418	142919418	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAS2R40-23	NM_176882	exon1	c.C247A	p.L83I	AGTCTGCTATTCC	.	70	6	61	0	.	0	0	0	0	0	3
OR2A14	135941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143826247	143826247	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2A14-90	NM_001001659	exon1	c.G42A	p.P14P	CTTGCCGCGATTC	.	187	57	165	0	.	0	0	0	0	0	5
OR2A14	135941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	143826338	143826338	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2A14-90	NM_001001659	exon1	c.T133G	p.F45V	GTCATCTTTGGGA	.	276	27	197	0	.	0	0	0	0	0	4
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	139609190	139609190	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL22A1-103	NM_152888	exon62	c.C4389A	p.T1463T	ACGCAGGGTTTCC	.	101	20	100	0	.	0	0	0	0	0	5
ZCCHC6	79670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	88918065	88918065	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZCCHC6-92	NM_024617	exon25	c.G4030T	p.D1344Y	ATCTATCATTTGG	.	125	11	111	0	.	10	9	1	0	0	3
WNK2	65268	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	96025908	96025908	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WNK2-765	NM_006648	exon14	c.T3471C	p.F1157F	CGCCTTTGGAGGG	.	74	9	51	0	.	0	0	0	0	0	3
DBH	1621	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	136518101	136518101	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DBH-516	NM_000787	exon9	c.G1414T	p.D472Y	ACAGAAGACCGGG	.	264	23	249	0	.	0	0	0	0	0	3
GLT6D1	360203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	138517976	138517976	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GLT6D1-91	NM_182974	exon4	c.C196A	p.L66M	TTTCCAGGACCCG	.	144	51	123	0	.	0	0	0	0	0	5
FAM157B	100132403	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	141109762	141109762	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145249	exon3	c.C391T	p.P131S	AGGCGGCCCTCAT	.	373	51	345	0	.	0	0	0	0	0	4
MAP7D2	256714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	20044071	20044071	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAP7D2-195	NM_001168467	exon9	c.729-1G>T	.	GCTGTCCTGGAAA	.	87	21	48	0	.	0	0	0	0	0	5
CXorf22	170063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	35993875	35993875	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CXorf22-131	NM_152632	exon15	c.C2558A	p.S853Y	TATCTTCTAATGA	.	140	18	90	0	.	0	0	0	0	0	4
AJAP1	55966	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	4772335	4772335	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AJAP1-515	NM_018836	exon2	c.G405A	p.S135S	GTCCTCGTCCTCG	.	21	11	12	0	.	2	0	2	0	0	3
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	176525604	176525604	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAPPA2-548	NM_020318	exon2	c.G146A	p.R49H	GAGAACGTTGTTG	.	194	66	246	0	.	0	0	0	0	0	5
METTL7B	196410	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	56075586	56075586	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	METTL7B-514	NM_152637	exon1	c.C48T	p.T16T	TCTTACCCTGCCC	.	99	7	78	0	.	0	0	0	0	0	3
NUDT4	11163	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	93792979	93792979	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NUDT4-90	NM_199040	exon5	c.G370C	p.E124Q	AAAGTAGAAGATG	.	275	69	217	0	.	76	63	13	0	0	4
CCDC168	643677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	103382007	103382007	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001146197	exon4	c.C21040G	p.P7014A	AAAAGGGCCGGTT	.	106	16	80	0	.	0	0	0	0	0	4
NDUFAF1	51103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41680715	41680715	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NDUFAF1-91	NM_016013	exon4	c.T765A	p.P255P	GGAAAAAGGAATC	.	98	18	109	0	.	1	1	0	0	0	4
C15orf48	84419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45724279	45724279	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C15orf48-91	NM_197955	exon4	c.A132G	p.R44R	TGATCGAAAAAAA	.	54	16	60	0	.	0	0	0	0	0	5
ZNF319	57567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	58031921	58031921	+	Silent	SNP	G	G	A	rs144999714	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF319-90	NM_020807	exon2	c.C249T	p.H83H	CAGGTCGTGACCA	.	92	29	70	0	G|1.000;A|0.000	12	10	2	0	0	4
HYDIN	54768	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	70891677	70891677	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HYDIN-92	NM_001270974	exon72	c.G12226C	p.V4076L	TGCCTACCAGCAG	.	270	39	291	1	.	2	2	0	0	0	3
GRIN2C	2905	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	72846371	72846371	+	Missense_Mutation	SNP	C	C	T	rs140384270	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRIN2C-228	NM_000835	exon6	c.G1465A	p.G489S	ATACGCCGCGCAC	.	94	5	163	0	C|0.999;T|0.001	8	8	0	0	0	3
RANBP3	8498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	5951537	5951537	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RANBP3-272	NM_007322	exon3	c.A149T	p.H50L	GTGCCATGGTGGG	.	103	18	60	0	.	18	16	2	0	0	4
UBA2	10054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34929551	34929551	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBA2-227	NM_005499	exon6	c.G461C	p.G154A	CATAGGGTGTGAC	.	189	47	113	0	.	0	0	0	0	0	5
HPN	3249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35551399	35551399	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HPN-515	NM_182983	exon8	c.C603T	p.A201A	GACAGCCGCCCAC	.	136	28	72	0	.	0	0	0	0	0	5
ZNF585B	92285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37677163	37677163	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF585B-91	NM_152279	exon5	c.A1276T	p.I426F	GTGTAATCAAGTG	.	156	42	103	0	.	6	4	2	0	0	5
SCAF1	58506	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50156834	50156834	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCAF1-68	NM_021228	exon7	c.C3188G	p.S1063C	CGGGGTCCACAGC	.	93	17	20	0	.	164	129	35	0	0	3
VN1R2	317701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53761677	53761677	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VN1R2-90	NM_173856	exon1	c.A49G	p.I17V	ATAAATATCAGCG	.	120	28	79	0	.	5	5	0	0	0	5
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	21224859	21224859	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	APOB-175	NM_000384	exon29	c.13435delA	p.S4479fs	CCTGGCTTTTAAT	.	53	19	62	0	.	0	0	0	0	0	3
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	215914356	215914356	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCA12-99	NM_173076	exon6	c.C687G	p.F229L	CTGGGAGAACTGT	.	78	29	127	0	.	0	0	0	0	0	5
RBM44	375316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	238729832	238729832	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBM44-26	NM_001080504	exon6	c.G2035A	p.E679K	CCACTGGAAGAGC	.	82	37	80	0	.	0	0	0	0	0	5
DNMT3B	1789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	31372582	31372582	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNMT3B-660	NM_175850	exon4	c.G259T	p.D87Y	GATGGCGACGGGG	.	128	36	123	0	.	0	0	0	0	0	5
STK4	6789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43623747	43623747	+	Missense_Mutation	SNP	G	G	A	rs202070040	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STK4-767	NM_006282	exon6	c.G542A	p.R181Q	CCAAGCGGAATAC	.	169	56	149	0	G|0.999;A|0.000	3	0	3	0	0	5
CCDC54	84692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	107096799	107096799	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC54-90	NM_032600	exon1	c.C365T	p.T122M	GCACAACGACTAA	.	118	52	137	0	.	0	0	0	0	0	5
ZBBX	79740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	167051700	167051700	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZBBX-92	NM_024687	exon10	c.C602A	p.P201H	TCTTTGGGTTCAT	.	62	32	55	0	.	0	0	0	0	0	5
USP38	84640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	144135926	144135926	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP38-660	NM_032557	exon9	c.A2797G	p.T933A	AAAATTACGAGCA	.	231	48	218	0	.	37	23	14	0	0	5
PRDM9	56979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	23509687	23509687	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRDM9-139	NM_020227	exon3	c.G178A	p.A60T	TATAATGCACTGA	.	249	69	145	0	.	0	0	0	0	0	5
SPEF2	79925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	35667294	35667294	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPEF2-26	NM_024867	exon9	c.G1288A	p.A430T	GTATGTGCAGAAA	.	337	74	303	0	.	2	2	0	0	0	5
ENC1	8507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	73931914	73931914	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ENC1-228	NM_003633	exon2	c.C397T	p.R133W	CATCCCGGATGTC	.	112	25	121	0	.	17	9	8	0	0	5
PGK2	5232	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49753750	49753750	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PGK2-91	NM_138733	exon1	c.A1151C	p.N384T	TCAGTGTTCCATT	.	146	70	180	1	.	0	0	0	0	0	4
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2946306	2946306	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CARD11-870	NM_032415	exon25	c.G3431A	p.R1144H	GTCTTGCGCTGCT	.	187	79	222	0	.	1	1	0	0	0	5
CFTR	1080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	117149172	117149172	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CFTR-518	NM_000492	exon3	c.C249G	p.F83L	TATGTTCTATGGA	.	57	22	34	0	.	0	0	0	0	0	5
ENPP2	5168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	120594822	120594822	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ENPP2-292	NM_006209	exon19	c.G1720C	p.A574P	TAGGAGCTGGCTT	.	162	44	90	0	.	365	365	0	0	0	5
JAK2	3717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5055714	5055714	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	JAK2-75307	NM_004972	exon8	c.A982G	p.I328V	GTCAGTATTAAGC	.	21	10	51	0	.	1	1	0	0	0	5
FRMPD4	9758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12736016	12736016	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FRMPD4-263	NM_014728	exon16	c.C3071A	p.T1024N	CCTGCACTAGCAA	.	203	123	382	1	.	0	0	0	0	0	5
WDR81	124997	ucsc.edu;bcgsc.ca	37	17	1640812	1640812	+	Missense_Mutation	SNP	G	G	A	rs200284291	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDR81-91	NM_001163809	exon10	c.G5659A	p.V1887M	GGCACCGTGTCCA	.	140	55	194	2	.	35	16	19	0	0	2
ZNF444	55311	hgsc.bcm.edu	37	19	56671359	56671359	+	Missense_Mutation	SNP	C	C	G	rs145075834	unknown	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF444-90	NM_018337	exon5	c.C773G	p.T258S	GCAAGACCTTCTA	.	41	9	6	0	C|0.987;G|0.013	8	4	4	0	0	1
PCDHB2	56133	bcgsc.ca	37	5	140476000	140476000	+	Silent	SNP	G	G	T	rs141231979	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB2-96	NM_018936	exon1	c.G1626T	p.A542A	CCCGGCGTTGAGC	.	486	44	41	0	G|0.994;T|0.006	47	3	44	0	0	1
FAM104B	90736	broad.mit.edu;ucsc.edu	37	X	55172537	55172537	+	Nonsense_Mutation	SNP	G	G	A	rs1047054	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM104B-130	NM_001166700	exon3	c.C331T	p.R111X	GCCCTCGCTGCTG	.	27	5	64	1	G|0.500;A|0.500	38	26	12	0	0	2
RERE	473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	8557547	8557547	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RERE-515	NM_012102	exon10	c.G922T	p.D308Y	CTGTATCACCATC	.	177	73	258	1	.	3	2	1	0	0	4
ANGPTL7	10218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11249964	11249964	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANGPTL7-90	NM_021146	exon1	c.G328T	p.D110Y	CAAATTGACATCA	.	96	36	114	0	.	0	0	0	0	0	5
KAZN	23254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15390118	15390118	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KAZN-91	NM_015209	exon7	c.G1098T	p.Q366H	TGTACAGGTAGGT	.	87	35	98	0	.	0	0	0	0	0	5
IFI6	2537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27995817	27995817	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IFI6-91	NM_002038	exon2	c.G9T	p.Q3H	CGCCTTCTGCCGC	.	96	13	70	0	.	260	204	56	0	0	4
CCDC30	728621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43055014	43055014	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC30-90	NM_001080850	exon9	c.G1243T	p.D415Y	AACGTAGATGAGT	.	86	42	125	0	.	7	6	1	0	0	5
DMAP1	55929	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	44685801	44685801	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DMAP1-226	NM_001034024	exon10	c.G1164T	p.L388L	TGAGCTGCAGATG	.	200	13	153	0	.	80	76	4	0	0	3
ELAVL4	1996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	50659584	50659584	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ELAVL4-516	NM_001144775	exon4	c.G553T	p.V185F	GATCAAGTCACAG	.	170	68	181	0	.	0	0	0	0	0	5
IL23R	149233	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67724387	67724387	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IL23R-90	NM_144701	exon11	c.C1466A	p.S489X	AAATTTCAAATTT	.	118	25	168	1	.	0	0	0	0	0	4
LPHN2	23266	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	82409449	82409449	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LPHN2-525	NM_012302	exon5	c.C1194A	p.A398A	TCCTGCCCAAGGT	.	124	25	106	1	.	0	0	0	0	0	4
WDR63	126820	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	85592293	85592293	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDR63-95	NM_145172	exon20	c.G2212A	p.G738R	GAAGATGGATACA	.	111	7	89	0	.	4	4	0	0	0	3
TGFBR3	7049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	92187701	92187701	+	Missense_Mutation	SNP	C	C	A	rs140100898	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TGFBR3-93	NM_001195683	exon8	c.G886T	p.A296S	TAGGAGCCTGAAG	.	57	8	40	0	C|0.999;A|0.001	0	0	0	0	0	4
AHCYL1	10768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110561730	110561730	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AHCYL1-91	NM_006621	exon14	c.G1375T	p.A459S	ATCACAGCCACAA	.	57	18	57	0	.	0	0	0	0	0	5
CHIA	27159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	111862838	111862838	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHIA-91	NM_201653	exon12	c.G1181T	p.C394F	CAGGTTGCACGGC	.	80	9	103	0	.	0	0	0	0	0	4
TBX15	6913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	119427957	119427957	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBX15-136	NM_152380	exon8	c.G889T	p.A297S	TTCGGGCACATGG	.	42	13	54	0	.	1	1	0	0	0	5
RORC	6097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151787731	151787731	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RORC-227	NM_005060	exon5	c.C469A	p.Q157K	GCAGCTGCCCGTC	.	49	9	66	0	.	2	1	1	0	0	4
KCNN3	3782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154841756	154841756	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNN3-91	NM_001204087	exon1	c.G685T	p.A229S	GGTGGGCATGGTT	.	87	14	120	0	.	0	0	0	0	0	4
NTRK1	4914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156841476	156841476	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NTRK1-1393	NM_001012331	exon7	c.G779T	p.R260M	TCAACAGGAAGAA	.	161	21	138	0	.	0	0	0	0	0	4
HMCN1	83872	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186050464	186050464	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HMCN1-113	NM_031935	exon56	c.G8725T	p.D2909Y	CAGAAAGATGGAC	.	77	24	72	1	.	0	0	0	0	0	4
PLA2G4A	5321	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	186909138	186909138	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLA2G4A-721	NM_024420	exon10	c.G945T	p.L315F	CAGTTTGAAGGAA	.	70	7	53	0	.	2	2	0	0	0	3
IGFN1	91156	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201193916	201193916	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGFN1-71	NM_001164586	exon21	c.G10400T	p.G3467V	TGGCTGGACTCTC	.	200	76	154	1	.	0	0	0	0	0	3
LRRN2	10446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	204588338	204588338	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRN2-514	NM_006338	exon3	c.C783T	p.P261P	GAGCCCGGGCACC	.	50	7	46	0	.	0	0	0	0	0	4
DSTYK	25778	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205156626	205156626	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DSTYK-333	NM_199462	exon2	c.C574A	p.L192M	CCTCCAGATCCTC	.	128	53	148	1	.	1	1	0	0	0	4
ACBD3	64746	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	226347014	226347014	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACBD3-226	NM_022735	exon5	c.C774A	p.F258L	CTGCTGGAACTGC	.	153	23	182	1	.	9	6	3	0	0	3
DISC1	27185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	232144789	232144789	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DISC1-91	NM_001164537	exon12	c.G2397T	p.Q799H	TGAACAGAAAGAG	.	43	19	55	0	.	0	0	0	0	0	5
SFMBT2	57713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	7214601	7214601	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SFMBT2-141	NM_001029880	exon18	c.G2007T	p.K669N	GATCTTCTTTCTC	.	22	9	21	0	.	0	0	0	0	0	5
GATA3	2625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	8115981	8115981	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GATA3-1004	NM_001002295	exon6	c.G1330T	p.G444C	GCCATGGGTTAGA	.	64	26	61	0	.	1	1	0	0	0	5
DHTKD1	55526	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	12148305	12148305	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DHTKD1-515	NM_018706	exon11	c.G1957T	p.E653X	AGCATTGAGAGCC	.	120	55	189	1	.	2	2	0	0	0	4
MLLT10	8028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	21962834	21962834	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLLT10-658	NM_001195626	exon10	c.C1607A	p.S536Y	GCTCATCTCCAGT	.	43	7	73	0	.	0	0	0	0	0	4
COMMD3-BMI1	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	22618192	22618192	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001204062	exon14	c.G1131T	p.M377I	AAGAATGAAGATC	.	29	8	37	0	.	12	5	7	0	0	4
SVIL	6840	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	29818653	29818653	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SVIL-96	NM_021738	exon12	c.G2227T	p.E743X	CCACCTCTTCAGT	.	44	17	50	1	.	0	0	0	0	0	3
GJD4	219770	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	35897531	35897531	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GJD4-155	NM_153368	exon2	c.G1090T	p.A364S	CTGAGAGCCAGGA	.	158	10	128	0	.	0	0	0	0	0	3
C10orf71	118461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50531426	50531426	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C10orf71-90	NM_001135196	exon3	c.C836A	p.S279X	TTGAGTCATGGAA	.	136	38	161	0	.	0	0	0	0	0	5
ARID5B	84159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	63845627	63845627	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARID5B-94	NM_032199	exon9	c.G1366T	p.E456X	GAAAAAGAAAATG	.	18	10	29	0	.	3	1	2	0	0	5
SEC24C	9632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75528805	75528805	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEC24C-92	NM_198597	exon17	c.C2319A	p.S773R	CATGAGCAACACG	.	97	46	153	0	.	22	17	5	0	0	5
KCNMA1	3778	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	78761184	78761184	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNMA1-93	NM_001161352	exon19	c.C2247A	p.C749X	GGTGGAGCAATCA	.	152	19	208	2	.	0	0	0	0	0	3
RRP12	23223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	99126277	99126277	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RRP12-92	NM_015179	exon28	c.G3317T	p.R1106L	CATGCCCGGCTCC	.	58	10	75	0	.	60	56	4	0	0	4
AS3MT	57412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104638614	104638614	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AS3MT-44	NM_020682	exon9	c.C751A	p.R251S	GACTGTCGTTTTG	.	96	17	128	0	.	20	15	5	0	0	4
CCDC172	374355	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	118101581	118101581	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_198515	exon5	c.G316T	p.D106Y	GAGGAAGACAAAT	.	92	7	88	0	.	0	0	0	0	0	3
TACC2	10579	ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123846988	123846988	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TACC2-296	NM_206862	exon4	c.G4973T	p.G1658V	TTGGGGGTGAAAG	.	165	35	216	2	.	0	0	0	0	0	3
MKI67	4288	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	129903482	129903482	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MKI67-519	NM_002417	exon13	c.G6622T	p.D2208Y	GCTTGTCAGTGCA	.	158	68	149	1	.	6	2	4	0	0	4
OR51G1	79324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4945010	4945010	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR51G1-70	NM_001005237	exon1	c.T560C	p.M187T	AGCTTCATGATCT	.	89	15	85	0	.	0	0	0	0	0	4
OR51I2	390064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	5475467	5475467	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR51I2-72	NM_001004754	exon1	c.C749A	p.A250E	TACTTGCATTTTA	.	129	20	175	0	.	0	0	0	0	0	4
SPTY2D1	144108	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	18636678	18636678	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPTY2D1-90	NM_194285	exon3	c.G1143T	p.Q381H	GCTGGGCTGCCCA	.	76	14	110	1	.	4	4	0	0	0	3
NELL1	4745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	20907034	20907034	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NELL1-155	NM_006157	exon5	c.C551A	p.P184Q	TTCCCCCAGGAAT	.	77	35	81	0	.	1	1	0	0	0	5
LUZP2	338645	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	24784833	24784833	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LUZP2-92	NM_001252010	exon5	c.G375A	p.M125I	CAAAATGATCCGA	.	134	24	186	1	.	0	0	0	0	0	4
DCDC5	100506627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	30930510	30930510	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DCDC5-23	NM_020869	exon10	c.G1222T	p.E408X	TGTTTTCTTCTTT	.	88	11	66	0	.	0	0	0	0	0	4
CCDC73	493860	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	32739646	32739646	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC73-91	NM_001008391	exon3	c.G183T	p.M61I	CTGTGTCTCCACA	.	10	7	11	0	.	0	0	0	0	0	3
RAG1	5896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	36597790	36597790	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAG1-230	NM_000448	exon2	c.C2936A	p.A979D	TGAATGCCAGGCA	.	41	37	57	0	.	0	0	0	0	0	5
DGKZ	8525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	46397072	46397072	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DGKZ-676	NM_001105540	exon21	c.G2365T	p.D789Y	CAGGTGGATGGCG	.	93	48	25	0	.	6	2	4	0	0	4
OR4X2	119764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	48267186	48267186	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4X2-68	NM_001004727	exon1	c.C531A	p.L177L	CCTTCTCAAACTT	.	70	37	121	0	.	0	0	0	0	0	5
OR4A16	81327	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55110948	55110948	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4A16-69	NM_001005274	exon1	c.C272T	p.S91F	CTATTTCCTTGTC	.	85	13	138	1	.	0	0	0	0	0	3
TNKS1BP1	85456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57087809	57087809	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNKS1BP1-91	NM_033396	exon3	c.G472T	p.A158S	TGGTGGCCGCGAA	.	60	28	59	0	.	17	9	8	0	0	5
OR5B12	390191	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	58206901	58206901	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR5B12-68	NM_001004733	exon1	c.C724A	p.H242N	TAAGGTGGGAAGC	.	204	82	237	1	.	0	0	0	0	0	3
MEN1	4221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64574692	64574692	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MEN1-3017	NM_130804	exon7	c.799-1G>T	.	CAGCTTCTAGGAG	.	26	10	34	0	.	2	0	2	0	0	5
PACS1	55690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66001334	66001334	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PACS1-74	NM_018026	exon16	c.C1917A	p.L639L	CATCCTCAGGTTC	.	132	70	143	0	.	8	4	4	0	0	5
CD248	57124	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	66083700	66083700	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CD248-154	NM_020404	exon1	c.G799T	p.D267Y	GCCCGTCTGCTGC	.	124	9	74	0	.	9	9	0	0	0	3
PPP1CA	5499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	67167109	67167110	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPP1CA-659	NM_001008709	exon4	c.478_479del	p.160_160del	GTTTTCCACAGTT	.	120	20	182	0	.	0	0	0	0	0	3
NADSYN1	55191	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	71184625	71184625	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NADSYN1-92	NM_018161	exon8	c.G559T	p.D187Y	CACATCGACATGG	.	131	65	139	1	.	0	0	0	0	0	3
RNF169	254225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	74546991	74546991	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RNF169-69	NM_001098638	exon6	c.C1343A	p.S448X	CCCTTTCAAAAGC	.	46	10	57	0	.	3	3	0	0	0	4
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108380726	108380726	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EXPH5-95	NM_015065	exon6	c.G5508T	p.G1836G	TTCATTCCCAAGG	.	70	35	92	0	.	0	0	0	0	0	5
OR10G4	390264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	123886949	123886949	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR10G4-93	NM_001004462	exon1	c.C668A	p.S223Y	TCTGTTCCATCCT	.	221	97	285	1	.	0	0	0	0	0	4
ADAMTS8	11095	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	130275863	130275863	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS8-226	NM_007037	exon9	c.G2260T	p.E754X	CCTGCTCTATGGC	.	94	46	99	1	.	0	0	0	0	0	3
ANO2	57101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	5685071	5685071	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANO2-139	NM_020373	exon24	c.C2550A	p.F850L	GACGTTGAAAAAG	.	186	18	145	0	.	0	0	0	0	0	3
STYK1	55359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10777358	10777358	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STYK1-1379	NM_018423	exon8	c.C818A	p.A273D	TCATAAGCCAGGC	.	258	63	164	0	.	0	0	0	0	0	5
GPRC5D	55507	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	13102863	13102863	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPRC5D-90	NM_018654	exon1	c.G456T	p.M152I	TCTGGTCATGATG	.	271	38	171	1	.	0	0	0	0	0	4
ASUN	55726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	27066421	27066421	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_018164	exon14	c.G1774T	p.E592X	CCTGTTCATAATC	.	100	28	93	0	.	50	46	4	0	0	5
KLHL42	57542	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	27933962	27933962	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_020782	exon1	c.C699A	p.A233A	GCTGGCCAACAAC	.	165	40	124	1	.	9	5	4	0	0	3
ASIC1	41	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	50471033	50471033	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001256830	exon2	c.C698A	p.S233X	TCAACTCGGGCCG	.	148	19	134	1	.	0	0	0	0	0	3
KRT72	140807	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52992834	52992834	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRT72-96	NM_001146225	exon2	c.G489T	p.L163L	CAAGTCCAGCTGC	.	119	31	103	1	.	0	0	0	0	0	4
KRT3	3850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53189266	53189266	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRT3-90	NM_057088	exon1	c.C561A	p.I187I	GGGGTCGATCTCC	.	204	23	129	0	.	0	0	0	0	0	4
LACRT	90070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	55025610	55025610	+	Missense_Mutation	SNP	C	C	A	rs201410599	unknown;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LACRT-90	NM_033277	exon4	c.G267T	p.E89D	ACTTTTCTCCACT	.	108	13	73	0	C|0.999;T|0.001	0	0	0	0	0	4
ESYT1	23344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56522216	56522216	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ESYT1-95	NM_015292	exon1	c.C113A	p.S38Y	CAGGTTCTGGGGG	.	91	22	39	0	.	26	18	8	0	0	5
ZFC3H1	196441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	72017939	72017939	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFC3H1-138	NM_144982	exon23	c.G4451T	p.R1484I	TGAACTCTAAACA	.	78	28	52	0	.	6	2	4	0	0	5
GLIPR1L2	144321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	75804245	75804245	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GLIPR1L2-91	NM_152436	exon2	c.G266T	p.R89I	CTGCTAGAGCATG	.	210	49	131	0	.	0	0	0	0	0	5
ZDHHC17	23390	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	77209691	77209691	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_015336	exon7	c.C663A	p.D221E	TGGTGACAAGTAT	.	417	41	276	1	.	2	2	0	0	0	3
DCN	1634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	91545457	91545457	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DCN-555	NM_001920	exon7	c.G859T	p.G287W	CCAGCCCACCAGG	.	160	17	114	0	.	8	8	0	0	0	4
PLEKHG7	440107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	93149662	93149662	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLEKHG7-23	NM_001004330	exon7	c.G552T	p.E184D	ACAGGAGATTATA	.	142	45	84	0	.	0	0	0	0	0	5
NR2C1	7181	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	95434275	95434275	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NR2C1-187	NM_001032287	exon10	c.G1230T	p.S410S	AGGAATCGAAAGT	.	241	21	221	0	.	13	12	1	0	0	3
USP44	84101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	95911959	95911959	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP44-658	NM_032147	exon6	c.G2110A	p.D704N	AGGTATCAGCGTC	.	106	17	103	0	.	0	0	0	0	0	4
SART3	9733	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	108931880	108931880	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SART3-91	NM_014706	exon8	c.G1162C	p.A388P	CCATGGCCAAGAG	.	183	41	85	1	.	18	8	10	0	0	3
ACACB	32	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	109660636	109660636	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACACB-98	NM_001093	exon25	c.G3711T	p.E1237D	CTACGAGCTGCGG	.	135	47	142	1	.	11	6	5	0	0	3
TRPV4	59341	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	110230204	110230204	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPV4-94	NM_021625	exon12	c.C1855A	p.L619I	AGACGAGCAGGAA	.	118	28	107	2	.	1	1	0	0	0	3
HVCN1	84329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	111098996	111098996	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HVCN1-91	NM_032369	exon4	c.G279T	p.R93S	CAGTTTCCTCAAC	.	301	76	253	0	.	2	2	0	0	0	5
MAP1LC3B2	643246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117013934	117013934	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAP1LC3B2-68	NM_001085481	exon2	c.C187A	p.L63I	AGTGAGCTCATCA	.	424	124	373	0	.	248	247	1	0	0	5
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	120567240	120567240	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GCN1L1-94	NM_006836	exon57	c.C7730A	p.A2577E	TTATTTGCCCACC	.	112	14	131	0	.	68	54	14	0	0	4
DNAH10	196385	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124317840	124317840	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH10-95	NM_207437	exon26	c.G4371T	p.L1457L	TTTTCTGCAAACT	.	191	40	180	1	.	0	0	0	0	0	4
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	124399087	124399087	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH10-95	NM_207437	exon60	c.G10210T	p.E3404X	GATGTTGAGATCA	.	77	13	64	0	.	0	0	0	0	0	4
TMEM132C	92293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	129028583	129028583	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM132C-68	NM_001136103	exon3	c.C1056A	p.G352G	GGTGGGCAGCGGC	.	258	108	131	0	.	0	0	0	0	0	5
TMEM132D	121256	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	129559056	129559056	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM132D-106	NM_133448	exon9	c.C2664A	p.F888L	GGCTGGGAAGCTG	.	66	26	78	1	.	0	0	0	0	0	3
PDS5B	23047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	33316808	33316808	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDS5B-94	NM_015032	exon23	c.G2555T	p.R852I	CCTTAAGATTGCT	.	73	32	104	0	.	3	2	1	0	0	5
GPR183	1880	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99947317	99947317	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR183-522	NM_004951	exon2	c.G1083C	p.K361N	ATTTCACTTTCCA	.	102	35	140	1	.	5	5	0	0	0	3
CCDC168	643677	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	13	103399003	103399003	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001146197	exon4	c.G4044T	p.V1348V	TTTCATCACTTTA	.	81	15	59	0	.	0	0	0	0	0	3
CUL4A	8451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	113909353	113909353	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CUL4A-651	NM_001008895	exon18	c.G1945T	p.E649X	GAAGTGGAAGATG	.	270	94	230	0	.	14	13	1	0	0	5
CDH24	64403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23521682	23521682	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH24-90	NM_022478	exon8	c.G1363T	p.G455C	CCTCACCGAGCTC	.	120	12	62	0	.	3	0	3	0	0	4
BCL2L2-PABPN1	100529063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23791464	23791464	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001199864	exon4	c.G507A	p.E169E	GAACGAGGTAGAG	.	240	51	168	0	.	135	91	44	0	0	5
TGM1	7051	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24731331	24731331	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TGM1-91	NM_000359	exon2	c.C228A	p.G76G	TCGAGTGCCAGAG	.	153	42	120	1	.	0	0	0	0	0	3
KHNYN	23351	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	24901482	24901482	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KHNYN-93	NM_015299	exon3	c.C1015A	p.R339R	CAGTCCCGAGGAG	.	162	11	131	0	.	15	15	0	0	0	3
AKAP6	9472	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	33291762	33291762	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AKAP6-733	NM_004274	exon13	c.C4743A	p.G1581G	ATTGGGCATCTTT	.	103	28	99	0	.	0	0	0	0	0	4
RALGAPA1	253959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	36191028	36191028	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RALGAPA1-138	NM_194301	exon16	c.C2132A	p.S711X	TCAACTGAAACTT	.	94	18	65	0	.	1	1	0	0	0	5
ERO1L	30001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	53110333	53110333	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ERO1L-90	NM_014584	exon16	c.G1362T	p.V454V	TTCTTTCACACTT	.	43	10	48	0	.	77	66	11	0	0	5
FERMT2	10979	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	53386013	53386013	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FERMT2-68	NM_001135000	exon3	c.G219T	p.L73L	TGTCTTCAGAAGC	.	158	54	138	1	.	0	0	0	0	0	3
PELI2	57161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	56755230	56755230	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PELI2-91	NM_021255	exon4	c.G385T	p.A129S	GACGAAGCCCAGA	.	175	29	160	0	.	0	0	0	0	0	5
TMEM260	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	57103241	57103241	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_017799	exon15	c.C1794A	p.F598L	ACCGTTCTTCATC	.	217	22	186	2	.	10	10	0	0	0	3
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64580141	64580141	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SYNE2-164	NM_182914	exon66	c.G12692T	p.R4231M	AAACTAGGCCGGA	.	83	24	66	0	.	1	1	0	0	0	5
DLST	1743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	75359678	75359678	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DLST-227	NM_001933	exon8	c.C584A	p.S195Y	CTCCTTCTGGCAA	.	103	15	103	0	.	0	0	0	0	0	4
BEGAIN	57596	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	101011394	101011394	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BEGAIN-68	NM_020836	exon4	c.C186A	p.S62R	GTAGTTGCTCTGA	.	72	7	50	0	.	0	0	0	0	0	3
HSP90AA1	3320	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102551693	102551693	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HSP90AA1-949	NM_001017963	exon5	c.G971T	p.R324I	TTTATTCTTCGTT	.	192	58	154	1	.	194	137	57	0	0	3
SIVA1	10572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105222044	105222044	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SIVA1-514	NM_006427	exon2	c.C196A	p.H66N	GTCGTTCACCTGC	.	117	33	95	0	.	185	127	58	0	0	5
HERC2	8924	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	28441707	28441707	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HERC2-234	NM_004667	exon51	c.G8020T	p.A2674S	CATTGGCACTGAA	.	394	94	285	1	.	0	0	0	0	0	3
FAN1	22909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	31217483	31217483	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAN1-90	NM_014967	exon9	c.G2326T	p.D776Y	GTGCAAGATGTGA	.	69	15	46	0	.	4	2	2	0	0	5
TRPM1	4308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	31342674	31342674	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPM1-94	NM_001252020	exon11	c.G1426T	p.G476W	CTTTCCCTTTCTT	.	151	31	126	0	.	0	0	0	0	0	5
EMC4	51234	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	34517318	34517318	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_016454	exon1	c.G3T	p.M1I	TGCCATGACGGCC	.	147	10	86	0	.	129	113	16	0	0	3
RASGRP1	10125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	38808534	38808534	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RASGRP1-697	NM_001128602	exon6	c.C539A	p.S180Y	TTCCTGGACCAGT	.	150	23	84	0	.	0	0	0	0	0	5
CHP1	11261	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41523643	41523643	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_007236	exon1	c.C63A	p.T21T	GGAGACCGGCTGT	.	203	56	118	1	.	0	0	0	0	0	3
TYRO3	7301	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	41861213	41861213	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TYRO3-1388	NM_006293	exon9	c.C1245A	p.D415E	TCATGACCGTGCA	.	112	10	60	0	.	0	0	0	0	0	3
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	54825158	54825158	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UNC13C-51	NM_001080534	exon24	c.G5590T	p.E1864X	AGTTTCGAACTAA	.	116	33	142	0	.	0	0	0	0	0	5
CGNL1	84952	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	57731629	57731629	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CGNL1-100	NM_001252335	exon3	c.G1432T	p.E478X	AGTCAGGAAAGTA	.	171	24	137	1	.	0	0	0	0	0	3
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63017258	63017258	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TLN2-573	NM_015059	exon24	c.G3210T	p.K1070N	TGCCAAGATGGCA	.	56	20	35	0	.	0	0	0	0	0	5
CLPX	10845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65443246	65443246	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLPX-90	NM_006660	exon14	c.C1817A	p.P606Q	TTTGTTGGAGCCC	.	37	16	40	0	.	0	0	0	0	0	5
SNAPC5	10302	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	66787699	66787699	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SNAPC5-90	NM_006049	exon2	c.C149A	p.S50Y	TGAGAAGACAGCA	.	149	44	137	1	.	20	17	3	0	0	3
CSK	1445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75091628	75091628	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSK-510	NM_001127190	exon6	c.G258T	p.K86N	CGGCAAGATCACA	.	92	31	78	0	.	31	27	4	0	0	5
SNUPN	10073	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75890858	75890858	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SNUPN-91	NM_001042581	exon9	c.G924T	p.Q308H	CATAATCTGCTGG	.	98	9	109	1	.	43	33	10	0	0	3
IREB2	3658	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	78732221	78732221	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IREB2-90	NM_004136	exon2	c.A104G	p.Y35C	CCAAGTATGGTAA	.	52	4	52	0	.	0	0	0	0	0	3
MESDC1	59274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81295513	81295513	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MESDC1-90	NM_022566	exon1	c.C901A	p.L301I	TGCGTGCTCCTGA	.	72	25	27	0	.	28	15	13	0	0	5
AGBL1	123624	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86806035	86806035	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_152336	exon9	c.C858A	p.N286K	CGTGAACAAGCTG	.	195	29	163	1	.	0	0	0	0	0	4
KIF7	374654	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	90190829	90190829	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF7-523	NM_198525	exon6	c.C1558A	p.Q520K	GCACCTGCAGTTT	.	60	27	67	1	.	0	0	0	0	0	3
PTX4	390667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1537885	1537885	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTX4-90	NM_001013658	exon2	c.C213A	p.F71L	GCTCCGGAACCGG	.	192	25	141	0	.	0	0	0	0	0	4
CREBBP	1387	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3843582	3843582	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CREBBP-1807	NM_001079846	exon4	c.G1021T	p.A341S	CTGTTGCAATTGC	.	116	34	130	1	.	3	2	1	0	0	4
RSL1D1	26156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	11940360	11940360	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RSL1D1-90	NM_015659	exon5	c.C633A	p.C211X	CTACCTGCAAGAA	.	113	27	65	0	.	0	0	0	0	0	5
ACSM3	6296	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	20787314	20787314	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACSM3-91	NM_005622	exon3	c.C373A	p.L125M	GTAATTCTGATTC	.	134	12	100	0	.	125	121	4	0	0	3
GGA2	23062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23491135	23491135	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GGA2-91	NM_015044	exon11	c.G1080T	p.Q360H	CCCCATCTGCGCA	.	117	26	97	0	.	60	43	17	0	0	5
IL21R	50615	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27454345	27454345	+	Missense_Mutation	SNP	C	C	A	rs146177564	unknown;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IL21R-660	NM_181079	exon6	c.C481A	p.R161S	TCCTGGCGCTCAG	.	221	50	175	2	C|1.000;T|0.000	1	0	1	0	0	3
KCTD13	253980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	29918291	29918291	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCTD13-90	NM_178863	exon6	c.G892T	p.E298X	TCTCTTCATCCTC	.	147	21	110	0	.	51	45	6	0	0	4
ZNF768	79724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30535865	30535865	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF768-90	NM_024671	exon2	c.G1596T	p.Q532H	GGTCCGCTGGTGG	.	134	47	15	0	.	139	90	49	0	0	5
CCDC135	84229	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57732903	57732903	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC135-90	NM_032269	exon3	c.C345A	p.L115L	GCCCCTCTTCCTG	.	125	12	115	1	.	0	0	0	0	0	3
CNGB1	1258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57935280	57935280	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNGB1-137	NM_001297	exon29	c.G2952T	p.L984L	GTTGGGCAGGTAG	.	143	16	88	0	.	0	0	0	0	0	4
LRRC29	26231	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67241849	67241849	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC29-226	NM_001004055	exon5	c.T430A	p.W144R	GGGCCCAGCCCTT	.	108	15	89	1	.	4	4	0	0	0	3
KCTD19	146212	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67333415	67333415	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCTD19-69	NM_001100915	exon6	c.C837A	p.S279R	CTCCAGGCTGGCT	.	86	9	57	1	.	0	0	0	0	0	3
HYDIN	54768	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	71209570	71209570	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HYDIN-92	NM_001198542	exon5	c.C537A	p.H179Q	CACTTTGTGGCCA	.	124	8	97	0	.	1	0	1	0	0	3
FOXC2	2303	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	86601196	86601196	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FOXC2-226	NM_005251	exon1	c.C255A	p.I85I	GGCCATCCAGAAC	.	415	124	312	1	.	1	1	0	0	0	4
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	7579722	7579722	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TP53-70225	NM_000546	exon4	c.75-1G>T	.	GGAAGTCTGAAAG	.	57	21	42	0	.	4	0	4	0	0	4
MAP2K3	5606	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	21215491	21215491	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAP2K3-790	NM_145109	exon10	c.G812T	p.W271L	AGTCCTGGGGGAC	.	81	8	102	0	.	50	48	2	0	0	3
BLMH	642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	28601155	28601155	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BLMH-91	NM_000386	exon7	c.C706T	p.R236X	TGTCTCGATATTC	.	55	12	75	0	.	9	9	0	0	0	4
RAB11FIP4	84440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	29848225	29848225	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAB11FIP4-91	NM_032932	exon5	c.C605A	p.S202Y	ACCTTTCTACACA	.	112	12	141	0	.	1	1	0	0	0	4
RAB11FIP4	84440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29848320	29848320	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAB11FIP4-91	NM_032932	exon5	c.C700A	p.P234T	CCTTGCCCCGATG	.	177	79	205	0	.	1	0	1	0	0	5
ACACA	31	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	35468526	35468526	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACACA-154	NM_198834	exon52	c.G6505T	p.D2169Y	CCAGATCCTTTCT	.	65	8	92	0	.	15	15	0	0	0	4
KRT40	125115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39140279	39140279	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_182497	exon3	c.G247T	p.G83W	ACACCCCATCCTC	.	125	54	155	0	.	0	0	0	0	0	5
KRTAP1-3	81850	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39190809	39190809	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_030966	exon1	c.G265T	p.G89C	TGCCACCACCAAT	.	91	27	121	1	.	0	0	0	0	0	4
RND2	8153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	41180515	41180515	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RND2-227	NM_005440	exon5	c.C502A	p.R168S	TCTGAGCGCAGCG	.	107	9	152	0	.	5	5	0	0	0	3
FMNL1	752	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	43322367	43322367	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FMNL1-91	NM_005892	exon21	c.G2620T	p.D874Y	TCGACTGATCGCA	.	97	41	105	2	.	2	1	1	0	0	3
SNF8	11267	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	47007866	47007866	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SNF8-90	NM_007241	exon8	c.G748T	p.A250S	CCTCAGCTGTAAT	.	20	6	21	0	.	42	38	4	0	0	3
PRKAR1A	5573	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	66526420	66526420	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRKAR1A-1141	NM_212472	exon11	c.G976T	p.E326X	CCAGGTGAAATTG	.	112	29	139	1	.	0	0	0	0	0	3
KCNJ2	3759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	68171641	68171641	+	Missense_Mutation	SNP	G	G	T	rs199473380	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNJ2-90	NM_000891	exon2	c.G461T	p.C154F	ATGAATGCCCAAT	.	87	36	105	0	.	0	0	0	0	0	5
MRPS7	51081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73258729	73258729	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MRPS7-90	NM_015971	exon2	c.G235T	p.A79S	GCTCCAGCAGGGA	.	50	19	82	0	.	43	24	19	0	0	5
AFMID	125061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76202078	76202078	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AFMID-136	NM_001145526	exon10	c.G847T	p.D283Y	GATGTGGACCACT	.	83	21	106	0	.	14	12	2	0	0	5
TBC1D16	125058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	77984098	77984098	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBC1D16-90	NM_019020	exon3	c.G640T	p.E214X	ACAGTTCCAAAGA	.	152	75	174	0	.	1	0	1	0	0	5
ANKRD30B	374860	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	14748544	14748544	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD30B-24	NM_001145029	exon1	c.C126A	p.I42I	GAAGATCCATACA	.	79	51	100	1	.	0	0	0	0	0	4
FHOD3	80206	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	34320707	34320707	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FHOD3-139	NM_025135	exon18	c.C3140A	p.A1047E	GCAGTGCAGAGCA	.	160	35	167	2	.	27	24	3	0	0	3
SLC14A2	8170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	43221304	43221304	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC14A2-93	NM_001242692	exon9	c.C1122A	p.I374I	CCTCATCTGTGGT	.	79	30	102	0	.	0	0	0	0	0	5
TNFRSF11A	8792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	60036497	60036497	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNFRSF11A-659	NM_003839	exon9	c.C1347G	p.C449W	AGGCTGCCGGAAC	.	42	35	48	0	.	0	0	0	0	0	5
NFATC1	4772	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	77246918	77246918	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NFATC1-290	NM_172387	exon9	c.C2724A	p.D908E	GTTGGACCAGTTG	.	98	6	61	0	.	0	0	0	0	0	3
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1047284	1047284	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCA7-98	NM_019112	exon15	c.C1974A	p.A658A	TGCGGCCTGCGGC	.	60	9	34	0	.	1	1	0	0	0	4
LMNB2	84823	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	2434856	2434856	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LMNB2-290	NM_032737	exon6	c.G911A	p.R304H	TCCTCGCGAGCCG	.	105	26	41	0	.	12	10	2	0	0	4
CDC37	11140	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	10503780	10503780	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDC37-522	NM_007065	exon7	c.C963A	p.I321I	CTTGCTGATGGCG	.	70	18	56	1	.	375	297	78	0	0	3
CNN1	1264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11657510	11657510	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNN1-90	NM_001299	exon3	c.C206A	p.P69Q	TGCAGCCAGGCTC	.	138	45	69	0	.	10	10	0	0	0	5
PALM3	342979	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	14169968	14169968	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PALM3-24	NM_001145028	exon1	c.G4T	p.A2S	TCTCCGCCATGGG	.	111	7	84	0	.	0	0	0	0	0	3
ZNF333	84449	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	14815966	14815966	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF333-92	NM_032433	exon6	c.G407T	p.W136L	CGCCTTGGTCTCT	.	94	28	53	2	.	2	1	1	0	0	3
AKAP8	10270	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15482785	15482785	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AKAP8-290	NM_005858	exon7	c.C1016A	p.S339X	TCTCCTGAGCGGA	.	149	18	110	1	.	13	12	1	0	0	3
AKAP8L	26993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15507978	15507978	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AKAP8L-1	NM_014371	exon12	c.C1519A	p.H507N	GGTTGTGATCCAT	.	188	22	141	0	.	203	174	29	0	0	4
ANKLE1	126549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17394631	17394631	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_152363	exon5	c.G1058T	p.C353F	GCCCTTGCCGGCA	.	86	10	81	0	.	0	0	0	0	0	4
MAST3	23031	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	18241370	18241370	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAST3-502	NM_015016	exon13	c.G1203T	p.Q401H	CAAACAGAACTTG	.	232	25	196	1	.	2	2	0	0	0	3
ZNF254	9534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	24309378	24309378	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF254-90	NM_203282	exon4	c.C576A	p.C192X	ATTTTGCATGCTT	.	111	10	66	0	.	8	7	1	0	0	4
ZFP14	57677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36831144	36831144	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFP14-91	NM_020917	exon5	c.G1584T	p.K528N	ATGAATCTTCTGA	.	102	16	83	0	.	4	4	0	0	0	4
WDR87	83889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38378662	38378662	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_031951	exon6	c.G5532T	p.K1844N	CAGATTCTTCTTT	.	104	23	81	0	.	0	0	0	0	0	5
ARHGEF1	9138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42410903	42410903	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGEF1-293	NM_199002	exon28	c.G2749T	p.G917W	CAGCTTGGGGGGA	.	137	31	79	0	.	37	30	7	0	0	5
CKM	1158	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45822926	45822926	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CKM-91	NM_001824	exon2	c.C46A	p.P16T	CCTCAGGCTTGTA	.	372	106	283	1	.	0	0	0	0	0	4
RASIP1	54922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49227597	49227597	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RASIP1-228	NM_017805	exon10	c.C2541A	p.L847L	CACCTTGAGCAGG	.	189	51	137	0	.	1	0	1	0	0	5
ZNF880	400713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52888417	52888417	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145434	exon4	c.C1584A	p.V528V	CAAGGTCTTCAGC	.	180	17	146	0	.	23	21	2	0	0	4
LILRA3	11026	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54803031	54803031	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LILRA3-91	NM_006865	exon4	c.G646T	p.G216W	GGAGCCCCAGGAG	.	228	29	174	1	.	2	2	0	0	0	3
ZNF667	63934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56952598	56952598	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF667-91	NM_022103	exon5	c.G1766T	p.G589V	GCCTTCCCACATT	.	111	27	65	0	.	13	7	6	0	0	5
ZNF419	79744	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	58004403	58004403	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF419-90	NM_001098491	exon5	c.C481A	p.Q161K	TCCTTGCAAAGCA	.	448	43	291	0	.	8	6	2	0	0	3
ZNF814	730051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58384936	58384936	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001144989	exon3	c.G1822T	p.E608X	CACATTCTCCACA	.	116	31	100	0	.	5	2	3	0	0	5
C19orf18	147685	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58485719	58485719	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C19orf18-91	NM_152474	exon1	c.G82T	p.D28Y	GTCCATCTGCATA	.	138	32	102	1	.	0	0	0	0	0	4
AGBL5	60509	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27290394	27290394	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AGBL5-154	NM_021831	exon12	c.C2122A	p.Q708K	CAGCAGCAGCCCC	.	102	32	118	1	.	5	2	3	0	0	4
SLC8A1	6546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	40657111	40657111	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC8A1-93	NM_001252624	exon1	c.G310T	p.E104X	TGACTTCTATAGA	.	60	32	60	0	.	0	0	0	0	0	5
SNRNP200	23020	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96948949	96948949	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SNRNP200-162	NM_014014	exon34	c.C4905A	p.L1635L	GCTGAAGAGCTGC	.	68	22	74	0	.	0	0	0	0	0	4
IL1RL1	9173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	102964457	102964457	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IL1RL1-517	NM_016232	exon9	c.G1023T	p.M341I	TTTAATGCTAATC	.	73	12	81	0	.	0	0	0	0	0	4
TGFBRAP1	9392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	105886085	105886085	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TGFBRAP1-91	NM_004257	exon11	c.C2050A	p.H684N	GGATATGCAGCGC	.	58	30	56	0	.	7	2	5	0	0	5
GCC2	9648	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	109087646	109087646	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GCC2-91	NM_181453	exon6	c.G1861T	p.E621X	AGGGAAGAAAGAT	.	150	18	188	1	.	2	2	0	0	0	3
AMMECR1L	83607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128631584	128631584	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AMMECR1L-90	NM_031445	exon3	c.C225A	p.P75P	TGTGATGGGAGAG	.	122	24	144	0	.	4	2	2	0	0	5
CCDC74B	91409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	130898834	130898834	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC74B-90	NM_207310	exon4	c.C580A	p.Q194K	AATCTTGCTTGTT	.	83	32	103	0	.	99	99	0	0	0	5
SCN9A	6335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	167129186	167129186	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCN9A-181	NM_002977	exon17	c.G3041T	p.R1014I	GCTTGTCTTATCT	.	37	6	38	0	.	0	0	0	0	0	4
ITGA6	3655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	173338941	173338941	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITGA6-227	NM_000210	exon6	c.C934A	p.L312M	GAAGGTCTGGCCT	.	117	62	152	0	.	1	1	0	0	0	5
WIPF1	7456	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	175427307	175427307	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WIPF1-92	NM_003387	exon8	c.G1480T	p.G494C	GAGCACCCCTTTC	.	147	84	173	0	.	1	1	0	0	0	4
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179477034	179477034	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_001267550	exon266	c.G50218T	p.E16740X	AGTCCTCAATTTC	.	89	20	133	0	.	0	0	0	0	0	5
ZNF804A	91752	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	185803043	185803043	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF804A-163	NM_194250	exon4	c.G2920T	p.E974X	CATTATGAACTGG	.	103	24	112	1	.	0	0	0	0	0	3
CALCRL	10203	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	188250272	188250272	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CALCRL-523	NM_001271751	exon3	c.G51T	p.M17I	GCTTACCATAAAA	.	95	45	137	2	.	0	0	0	0	0	3
COL5A2	1290	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	189917495	189917495	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL5A2-92	NM_000393	exon40	c.C2695A	p.R899R	TTCCTCGACCACC	.	163	80	202	1	.	3	3	0	0	0	4
CCDC150	284992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197541324	197541324	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001080539	exon12	c.G1309T	p.D437Y	GCACAGGATGCTG	.	172	74	211	0	.	0	0	0	0	0	5
SGOL2	151246	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201397779	201397779	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SGOL2-94	NM_001160046	exon2	c.G81T	p.K27N	TTCAAAGACTACT	.	120	49	191	1	.	0	0	0	0	0	4
INO80D	54891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	206869265	206869265	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	INO80D-91	NM_017759	exon11	c.C2911A	p.Q971K	GGAGTTGCTGCTT	.	99	10	131	0	.	0	0	0	0	0	4
ACSL3	2181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	223773830	223773830	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACSL3-228	NM_203372	exon3	c.G340T	p.E114X	AATGAGGAAGATG	.	45	11	66	0	.	13	13	0	0	0	5
DAW1	164781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	228770995	228770995	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_178821	exon9	c.G799A	p.A267T	AGCAGTGCCTCAT	.	36	5	65	0	.	0	0	0	0	0	4
EIF4E2	9470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	233431658	233431658	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EIF4E2-90	NM_004846	exon5	c.G495T	p.E165D	GGAGGAGATCTGT	.	65	36	82	0	.	51	22	29	0	0	5
DGKD	8527	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234344974	234344974	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DGKD-676	NM_152879	exon7	c.C706A	p.H236N	ATGCCCCACCAGT	.	126	47	123	1	.	0	0	0	0	0	3
UGT1A3	54659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234638397	234638397	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UGT1A3-24	NM_019093	exon1	c.C625A	p.Q209K	TTCATGCAAAGGG	.	215	50	284	0	.	0	0	0	0	0	5
COL6A3	1293	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	238275811	238275811	+	Silent	SNP	G	G	A	rs140516220	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL6A3-526	NM_004369	exon11	c.C5019T	p.G1673G	GGAGTCGCCATCT	.	109	19	145	1	G|1.000;A|0.000	1	1	0	0	0	3
CST9	128822	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	23584241	23584241	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CST9-91	NM_001008693	exon2	c.G386T	p.S129I	GGAAAGCTGATGC	.	170	34	205	1	.	0	0	0	0	0	3
NCOA6	23054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33328359	33328359	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NCOA6-292	NM_014071	exon11	c.G5701T	p.A1901S	GTCCTGCTGAGGC	.	38	22	41	0	.	22	10	12	0	0	5
PLCG1	5335	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	39794149	39794149	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLCG1-911	NM_182811	exon15	c.C1569A	p.T523T	GGAGACCAGCAGT	.	115	50	165	1	.	8	1	7	0	0	4
SDC4	6385	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	43956014	43956014	+	Missense_Mutation	SNP	A	A	G	rs149518436	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SDC4-90	NM_002999	exon5	c.T487C	p.F163L	TCAGGAAGACGGC	.	80	42	83	1	A|1.000;G|0.000	71	26	45	0	0	3
AURKA	6790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	54961553	54961553	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AURKA-1601	NM_198437	exon3	c.G79A	p.V27M	GAGTCACGAGAAC	.	106	54	90	0	.	8	2	6	0	0	5
PRPF6	24148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62616311	62616311	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRPF6-70	NM_012469	exon3	c.G292T	p.D98Y	AAAGATGATGAGG	.	55	10	78	0	.	25	17	8	0	0	4
NPBWR2	2832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62737957	62737957	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NPBWR2-153	NM_005286	exon1	c.G228T	p.M76I	CGTCTTCATCTTG	.	67	10	75	1	.	0	0	0	0	0	3
SAMSN1	64092	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	15893519	15893519	+	Missense_Mutation	SNP	G	G	T	rs192978628	unknown;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SAMSN1-94	NM_001256370	exon3	c.C285A	p.F95L	ACGATCGAAATTC	.	112	27	147	2	G|0.999;A|0.000	0	0	0	0	0	3
MAP3K7CL	56911	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	30464777	30464777	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_020152	exon6	c.C245G	p.S82C	TATGCTCTGCAAC	.	73	14	79	1	.	1	1	0	0	0	3
SCAF4	57466	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	33043911	33043911	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCAF4-90	NM_020706	exon20	c.A3245T	p.E1082V	GTCACCTCAGGCT	.	38	17	58	1	.	35	12	23	0	0	3
SYNJ1	8867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	34011381	34011381	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SYNJ1-232	NM_203446	exon31	c.C3869A	p.S1290Y	AAAGAAGACTGCG	.	37	7	49	0	.	2	2	0	0	0	4
CLDN5	7122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19511638	19511638	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLDN5-492	NM_001130861	exon1	c.G396T	p.W132C	CCCCTTCCAGGTG	.	67	56	56	0	.	2	2	0	0	0	5
SERPIND1	3053	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21140341	21140341	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SERPIND1-414	NM_000185	exon4	c.C1213A	p.L405I	TACAATCTAGTGG	.	112	60	123	2	.	0	0	0	0	0	3
IGLL1	3543	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	23915564	23915564	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGLL1-90	NM_020070	exon3	c.C531A	p.S177R	CAGGTAGCTGCTG	.	139	8	126	0	.	12	12	0	0	0	3
MYO18B	84700	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26423258	26423258	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO18B-142	NM_032608	exon43	c.G7318T	p.D2440Y	AAAGTGGACTTCG	.	154	73	203	1	.	0	0	0	0	0	4
TEX33	339669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37397950	37397950	+	Silent	SNP	G	G	T	rs200772582	unknown;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001163857	exon3	c.C417A	p.G139G	GATGCTGCCCTTC	.	112	25	171	0	G|0.999;A|0.001	0	0	0	0	0	5
TAB1	10454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	39811035	39811035	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAB1-522	NM_153497	exon2	c.G58T	p.D20Y	ACAGATGACCTGC	.	69	11	86	0	.	6	6	0	0	0	4
MOV10L1	54456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50552817	50552817	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MOV10L1-93	NM_018995	exon7	c.G892T	p.G298X	AATAAAGGAGACA	.	36	21	65	0	.	0	0	0	0	0	5
GADL1	339896	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	30875737	30875737	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GADL1-90	NM_207359	exon10	c.C940A	p.H314N	TGCGGTGCTTCCT	.	115	13	153	2	.	0	0	0	0	0	3
LARS2	23395	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	45589017	45589017	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LARS2-92	NM_015340	exon22	c.G2707T	p.D903Y	GTGCAAGATTGAC	.	94	18	84	1	.	15	12	3	0	0	3
PTPN23	25930	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	47454406	47454406	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPN23-227	NM_015466	exon25	c.C4642A	p.L1548I	CCCCCCCTTTCCT	.	30	16	27	0	.	1	0	1	0	0	4
USP19	10869	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49147976	49147976	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP19-663	NM_001199161	exon25	c.C3760A	p.L1254I	CATATAGATCGTA	.	100	18	127	1	.	27	24	3	0	0	3
SLC38A3	10991	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50256024	50256024	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC38A3-67	NM_006841	exon13	c.1037-1G>T	.	GCCACAGACGGGG	.	81	16	76	1	.	0	0	0	0	0	3
PBRM1	55193	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52643651	52643651	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PBRM1-575	NM_018313	exon17	c.G2245T	p.A749S	CAAGAGCATCTTT	.	103	14	109	1	.	3	3	0	0	0	3
ITIH3	3699	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52841088	52841088	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITIH3-93	NM_002217	exon19	c.G2228T	p.S743I	CTTTCAGCTGGCT	.	134	24	153	1	.	3	2	1	0	0	3
FAM208A	23272	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	56702515	56702515	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001112736	exon6	c.G807T	p.L269F	GGGGTCCAAAGCA	.	97	52	123	1	.	2	0	2	0	0	4
DENND6A	201627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	57616535	57616535	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_152678	exon17	c.G1424T	p.R475I	AACTGTCTTAATT	.	29	6	26	0	.	0	0	0	0	0	4
ATG3	64422	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	112257000	112257000	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATG3-93	NM_022488	exon8	c.C503A	p.T168K	TCATCTGTTTCCA	.	119	21	183	2	.	0	0	0	0	0	3
PIK3CB	5291	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	138478043	138478043	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIK3CB-1311	NM_006219	exon1	c.G143T	p.R48L	GCTTCCCGAGGTA	.	170	22	239	1	.	0	0	0	0	0	3
CPB1	1360	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	148575243	148575243	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CPB1-92	NM_001871	exon10	c.982-1G>T	.	TTTGCAGAATGCC	.	83	7	93	0	.	3	3	0	0	0	3
TSC22D2	9819	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	150128968	150128968	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TSC22D2-91	NM_014779	exon1	c.G1831T	p.E611X	ATTGCTGAAAATA	.	98	35	122	1	.	8	1	7	0	0	4
IQCJ-SCHIP1	100505385	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	159605617	159605617	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001197113	exon8	c.G1345T	p.A449S	GCCCTTGCCATGG	.	153	16	187	2	.	2	2	0	0	0	3
B3GALNT1	8706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	160804280	160804280	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	B3GALNT1-91	NM_001038628	exon8	c.C263A	p.P88H	TCTGAAGGGTGGG	.	46	22	36	0	.	0	0	0	0	0	5
LRRC34	151827	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	169514567	169514567	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC34-90	NM_001172779	exon8	c.C874A	p.L292M	TGTTCAGATACAG	.	105	19	161	2	.	0	0	0	0	0	3
TTC14	151613	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	180324359	180324359	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTC14-91	NM_001042601	exon9	c.C1140A	p.Y380X	AAAATACCTCTGC	.	91	9	100	0	.	3	3	0	0	0	3
EHHADH	1962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184910464	184910464	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EHHADH-93	NM_001966	exon7	c.G1722T	p.K574N	ACCTGTCTTCTGG	.	89	30	93	0	.	3	3	0	0	0	5
CEP19	84984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	196434499	196434499	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CEP19-69	NM_032898	exon3	c.G427T	p.D143Y	CAATGTCATAAAC	.	47	17	83	0	.	5	3	2	0	0	5
GAK	2580	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	882712	882712	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GAK-568	NM_005255	exon11	c.C1128A	p.D376E	CAGAATGTCCAGG	.	116	35	86	1	.	30	23	7	0	0	4
TACC3	10460	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	1742615	1742615	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TACC3-91	NM_006342	exon13	c.G2125T	p.D709Y	GAAAAAGACCAAC	.	126	20	88	1	.	90	82	8	0	0	3
HTRA3	94031	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	8293280	8293280	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HTRA3-91	NM_053044	exon4	c.G892T	p.A298S	ACGGATGCCATCA	.	133	17	110	1	.	0	0	0	0	0	3
DEFB131	644414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	9452101	9452101	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DEFB131-68	NM_001040448	exon2	c.C74A	p.S25Y	TCATTTCTAATGA	.	224	40	252	0	.	0	0	0	0	0	5
ZCCHC4	29063	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	25351214	25351214	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZCCHC4-70	NM_024936	exon7	c.C860A	p.A287D	CTCTGGCTATTAC	.	156	57	154	1	.	1	1	0	0	0	4
TBC1D1	23216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	37903767	37903767	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBC1D1-91	NM_015173	exon2	c.C51A	p.V17V	CGAGGTCTCGGTG	.	177	47	111	0	.	0	0	0	0	0	5
CORIN	10699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	47746504	47746504	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CORIN-91	NM_006587	exon5	c.C714A	p.L238L	GCATCTGAGGAAA	.	117	12	85	0	.	0	0	0	0	0	4
SCFD2	152579	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	54011642	54011642	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCFD2-93	NM_152540	exon5	c.C1419A	p.I473I	GAGAAGGATCAGC	.	127	22	106	1	.	23	21	2	0	0	3
SLC4A4	8671	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	72363343	72363343	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC4A4-95	NM_001098484	exon16	c.C2100A	p.F700L	CCTCTTCTTGGGA	.	131	11	92	0	.	0	0	0	0	0	3
ANKRD17	26057	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	73941997	73941997	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD17-234	NM_032217	exon34	c.G7763C	p.G2588A	CAGGGTCCAGTCC	.	200	11	142	0	.	0	0	0	0	0	3
CXCL1	2919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74735403	74735403	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CXCL1-204	NM_001511	exon2	c.G118T	p.E40X	GCCACTGAACTGC	.	221	71	164	0	.	0	0	0	0	0	5
CDKL2	8999	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	76522169	76522169	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDKL2-454	NM_003948	exon9	c.C1272A	p.P424P	AATGCTGGGAGCA	.	222	58	183	2	.	0	0	0	0	0	3
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	104082566	104082566	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CENPE-277	NM_001813	exon19	c.G1891T	p.E631X	CAGTTTCAGCATC	.	138	15	125	0	.	2	2	0	0	0	4
ARHGEF38	54848	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	106534599	106534599	+	Nonsense_Mutation	SNP	C	C	A	rs61751053	byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGEF38-292	NM_001242729	exon3	c.C443A	p.S148X	AGATATCAGCCAA	.	98	15	111	0	C|0.995;T|0.005	0	0	0	0	0	3
CYP2U1	113612	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	108866353	108866353	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CYP2U1-90	NM_183075	exon2	c.C718A	p.R240S	GGCCAGCGCTTTG	.	136	23	102	1	.	1	1	0	0	0	4
HADH	3033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	108944697	108944697	+	Missense_Mutation	SNP	G	G	T	rs144699575	byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HADH-91	NM_005327	exon5	c.G614T	p.G205V	CCCTAGGAAAGCA	.	131	17	108	0	G|0.999;C|0.001	86	74	12	0	0	4
ENPEP	2028	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	111441505	111441505	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ENPEP-157	NM_001977	exon10	c.G1710T	p.Q570H	TTCTCAGCCCCCT	.	165	14	141	0	.	3	3	0	0	0	3
USP53	54532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	120182880	120182880	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP53-660	NM_019050	exon11	c.G833T	p.R278I	TTTATAGAGTTAC	.	97	19	92	0	.	0	0	0	0	0	5
ANXA5	308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	122607510	122607510	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANXA5-91	NM_001154	exon3	c.G27T	p.V9V	GTCAGTCACAGTG	.	68	9	65	0	.	716	629	87	0	0	4
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	126329878	126329878	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAT4-108	NM_024582	exon4	c.G5849T	p.S1950I	CATACAGCACATC	.	105	22	84	0	.	0	0	0	0	0	5
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	126329907	126329907	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAT4-108	NM_024582	exon4	c.G5878T	p.G1960X	CCTGTGGGATCTA	.	86	33	76	0	.	0	0	0	0	0	5
HHIP	64399	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	145628246	145628246	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HHIP-283	NM_022475	exon6	c.C991A	p.P331T	AAAAATCCACACC	.	72	27	64	2	.	0	0	0	0	0	3
TTC29	83894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	147830262	147830262	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTC29-90	NM_031956	exon5	c.C316A	p.L106M	TCTGCAGCCAGAA	.	53	15	55	0	.	0	0	0	0	0	5
TENM3	55714	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	183696223	183696223	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001080477	exon23	c.G5221T	p.E1741X	CCTGGCGAGAACG	.	178	71	204	2	.	0	0	0	0	0	3
PDLIM3	27295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	186427748	186427748	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDLIM3-92	NM_014476	exon6	c.C721A	p.R241R	CATTCCGATTGTC	.	61	13	47	0	.	7	7	0	0	0	4
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	187534440	187534440	+	Missense_Mutation	SNP	G	G	T	rs200812915	unknown;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAT1-34	NM_005245	exon13	c.C9286A	p.L3096I	TGACGAGAAGATG	.	109	37	97	0	G|0.999;C|0.000	10	5	5	0	0	5
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	187629193	187629193	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAT1-34	NM_005245	exon2	c.G1789T	p.D597Y	GTTCATCTGCATC	.	43	27	42	0	.	0	0	0	0	0	5
SLC9A3	6550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	480044	480044	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC9A3-90	NM_004174	exon10	c.C1554A	p.V518V	CATGAGGACCCTG	.	124	15	80	0	.	25	20	5	0	0	4
CCT5	22948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	10258587	10258587	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCT5-92	NM_012073	exon6	c.C813A	p.V271V	CTCTGTCGAAGAT	.	244	34	206	0	.	160	125	35	0	0	5
RICTOR	253260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	38966809	38966809	+	Silent	SNP	C	C	A	rs149142099	byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RICTOR-849	NM_152756	exon15	c.G1233T	p.V411V	TGTTATCACTTCA	.	170	17	102	0	C|1.000;T|0.000	1	0	1	0	0	4
SKIV2L2	23517	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54619984	54619984	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SKIV2L2-92	NM_015360	exon3	c.C297A	p.V99V	CAGAGTCAAGGTA	.	167	49	168	1	.	8	6	2	0	0	4
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	89923239	89923239	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR98-103	NM_032119	exon7	c.G884T	p.G295V	TGATTGGATCTGA	.	168	23	173	0	.	0	0	0	0	0	4
CCNI2	645121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	132087879	132087879	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCNI2-68	NM_001039780	exon5	c.G996T	p.K332N	GCTAAAGAAAGCA	.	157	18	111	0	.	0	0	0	0	0	4
AFF4	27125	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	132272803	132272803	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AFF4-229	NM_014423	exon2	c.G79A	p.A27T	GGAAGGCGTCTTC	.	150	10	129	0	.	3	3	0	0	0	3
PCDHA6	56142	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140207893	140207893	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHA6-92	NM_031849	exon1	c.G217T	p.D73Y	CGCGAGGACCTTC	.	162	12	114	0	.	1	1	0	0	0	3
PCDHGA7	56108	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140763290	140763290	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_032087	exon1	c.G824T	p.G275V	TCAATGGGGAAGT	.	182	44	127	2	.	0	0	0	0	0	3
ARHGAP26	23092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	142264925	142264925	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGAP26-660	NM_015071	exon5	c.G447T	p.L149F	ACACTTGAATTTG	.	296	75	239	0	.	0	0	0	0	0	5
ITK	3702	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156671402	156671402	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITK-1427	NM_005546	exon13	c.G1363T	p.A455S	CTTTTTGCTGCAG	.	123	43	149	1	.	0	0	0	0	0	4
CYFIP2	26999	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	156753261	156753261	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CYFIP2-22	NM_001037332	exon18	c.G2065T	p.E689X	TACGATGAGATAG	.	129	21	153	1	.	4	4	0	0	0	3
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170668124	170668124	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RANBP17-524	NM_022897	exon23	c.C2615A	p.S872X	TGCTGTCAGTGTC	.	110	29	84	0	.	6	6	0	0	0	5
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	12121200	12121200	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIVEP1-139	NM_002114	exon4	c.G1172T	p.C391F	AAATGTGCAATCT	.	82	19	77	0	.	0	0	0	0	0	5
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	12163624	12163624	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIVEP1-139	NM_002114	exon9	c.C7087A	p.Q2363K	CAGAAGCAGCAAA	.	93	20	79	0	.	10	7	3	0	0	5
ABCF1	23	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30552279	30552279	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCF1-92	NM_001025091	exon14	c.G1327T	p.E443X	GACCCTGAAATGC	.	79	9	79	0	.	36	36	0	0	0	4
PSMB9	5698	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32825820	32825820	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PSMB9-90	NM_002800	exon4	c.C299A	p.A100E	CTGCTGCAAATGT	.	193	50	132	1	.	47	36	11	0	0	3
ITPR3	3710	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	33630346	33630346	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITPR3-1085	NM_002224	exon8	c.C753A	p.F251L	GAAGTTCCTGACG	.	107	50	73	1	.	1	1	0	0	0	3
BTBD9	114781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38561778	38561778	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BTBD9-226	NM_052893	exon4	c.G511T	p.E171X	GGACTTCCTGAGC	.	187	34	134	0	.	1	1	0	0	0	5
KCNK17	89822	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	39271826	39271826	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNK17-227	NM_001135111	exon4	c.C595A	p.L199I	AGAAGAGCAGCGG	.	153	42	122	2	.	0	0	0	0	0	3
PPP2R5D	5528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	42957364	42957364	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPP2R5D-1082	NM_180976	exon2	c.G43T	p.A15S	AAGGTTGCCAAAT	.	81	12	57	0	.	10	8	2	0	0	4
CYP39A1	51302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46607338	46607338	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CYP39A1-91	NM_016593	exon3	c.G381T	p.M127I	AGTCCCCATTTTC	.	121	35	109	0	.	0	0	0	0	0	5
OPN5	221391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	47754293	47754293	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OPN5-69	NM_181744	exon2	c.C173A	p.S58Y	ACATGTCTTCTAG	.	119	15	98	0	.	0	0	0	0	0	4
GLYATL3	389396	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	49485158	49485158	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001010904	exon4	c.C202A	p.L68I	GATAACCTTGATC	.	149	12	118	0	.	0	0	0	0	0	3
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	51612798	51612798	+	Missense_Mutation	SNP	C	C	A	rs141507554	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKHD1-603	NM_170724	exon58	c.G9616T	p.V3206L	TGGCCACAATGAC	.	178	22	127	0	C|1.000;A|0.000	0	0	0	0	0	4
ELOVL5	60481	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	53139932	53139932	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ELOVL5-90	NM_001242828	exon6	c.T533A	p.L178Q	ATGTTCAGCATCG	.	234	32	187	2	.	92	82	10	0	0	3
COL21A1	81578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	56033011	56033011	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL21A1-24	NM_030820	exon6	c.G1111T	p.E371X	TGTTTTCAATTTG	.	78	12	58	0	.	0	0	0	0	0	4
LGSN	51557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	63991038	63991038	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LGSN-227	NM_016571	exon4	c.G418T	p.A140S	ATGTGGCTCTTAT	.	126	42	111	0	.	0	0	0	0	0	5
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	65301109	65301109	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EYS-660	NM_001142800	exon26	c.G4651T	p.E1551X	TTAATTCTCTTAA	.	117	19	85	0	.	0	0	0	0	0	4
MB21D1	115004	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	74161347	74161347	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MB21D1-90	NM_138441	exon1	c.G558T	p.V186V	CCCTTTCACCATC	.	299	19	211	0	.	0	0	0	0	0	3
SNAP91	9892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	84292059	84292059	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SNAP91-23	NM_001242792	exon22	c.C2031A	p.F677L	CGCCATGAAAGAA	.	47	12	59	0	.	1	0	1	0	0	5
NT5E	4907	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	86195053	86195053	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NT5E-93	NM_001204813	exon4	c.C852A	p.G284G	TTTTGGCAAATAC	.	186	43	139	1	.	2	1	1	0	0	3
GRIK2	2898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	102503296	102503296	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRIK2-157	NM_021956	exon15	c.C2403A	p.G801G	GAGGGGCAATGGT	.	145	45	94	0	.	0	0	0	0	0	5
AIM1	202	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	106975232	106975232	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AIM1-139	NM_001624	exon5	c.G3241T	p.E1081X	TTAGAAGAAGGAG	.	238	27	185	1	.	0	0	0	0	0	3
AKD1	221264	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	109850273	109850273	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AKD1-91	NM_001145128	exon29	c.G3574T	p.D1192Y	TCGTATCAACCTG	.	24	6	19	0	.	0	0	0	0	0	3
GOPC	57120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	117923266	117923266	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GOPC-676	NM_001017408	exon1	c.C186A	p.I62I	ATAAGTGATGTCC	.	114	20	95	0	.	3	3	0	0	0	5
FAM184A	79632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	119285913	119285913	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM184A-519	NM_024581	exon16	c.G3057T	p.L1019L	TAATTCCAGCTGA	.	66	12	62	0	.	1	1	0	0	0	4
MED23	9439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	131927695	131927695	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MED23-24	NM_015979	exon14	c.C1309A	p.H437N	TGAGATGAATCCA	.	166	33	160	0	.	5	1	4	0	0	5
MYB	4602	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	135513461	135513461	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYB-838	NM_001161660	exon6	c.528-1G>T	.	TGTGCAGAACTGA	.	83	8	56	0	.	0	0	0	0	0	3
HIVEP2	3097	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	143094923	143094923	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIVEP2-95	NM_006734	exon5	c.C953A	p.S318X	CCCAATGATTCTT	.	65	14	41	1	.	0	0	0	0	0	3
GRM1	2911	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	146708064	146708064	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRM1-1080	NM_000838	exon7	c.C1641A	p.C547X	GATTTGCACGGCC	.	109	26	91	2	.	0	0	0	0	0	3
GRM1	2911	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146708146	146708146	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRM1-1080	NM_000838	exon7	c.C1723A	p.L575I	GCAGATCTAACAG	.	121	35	91	1	.	0	0	0	0	0	4
AKAP12	9590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	151647016	151647016	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AKAP12-293	NM_144497	exon1	c.C21A	p.I7I	CACCATCACAGGT	.	70	12	50	0	.	0	0	0	0	0	4
TIAM2	26230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155566830	155566830	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TIAM2-93	NM_012454	exon18	c.C3617A	p.A1206D	TCTGTGCTAACCA	.	70	16	46	0	.	8	5	3	0	0	5
AMZ1	155185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	2752257	2752257	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AMZ1-90	NM_133463	exon7	c.C1242A	p.C414X	CATGTGCATCCAG	.	194	20	81	0	.	1	1	0	0	0	4
MACC1	346389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20180669	20180669	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MACC1-93	NM_182762	exon7	c.C2459G	p.P820R	GTCACAGGGTTTT	.	78	16	39	0	.	0	0	0	0	0	5
NUPL2	11097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	23240027	23240027	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NUPL2-228	NM_007342	exon7	c.G935T	p.G312V	GTTTTGGATCACC	.	167	16	82	0	.	32	29	3	0	0	4
BBS9	27241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	33423320	33423320	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BBS9-230	NM_198428	exon18	c.T1832C	p.L611P	TTTGGCTCATAAC	.	104	15	54	0	.	9	8	1	0	0	4
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	70255405	70255405	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AUTS2-92	NM_015570	exon19	c.G3203T	p.W1068L	TCCACTGGGACCC	.	76	7	51	0	.	0	0	0	0	0	3
RHBDD2	57414	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	75508485	75508485	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RHBDD2-90	NM_001040456	exon1	c.C85A	p.L29M	CTCTCGCTGCTGG	.	170	44	65	1	.	211	149	62	0	0	3
MAGI2	9863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	77764344	77764344	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAGI2-461	NM_012301	exon17	c.C3025A	p.Q1009K	CCTCCTGAGGAAT	.	189	45	132	0	.	0	0	0	0	0	5
MAGI2	9863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	77814971	77814971	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAGI2-461	NM_012301	exon13	c.G2286T	p.R762S	ACTGGTCCTGGGT	.	177	18	148	0	.	0	0	0	0	0	3
GRM3	2913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	86394717	86394717	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRM3-528	NM_000840	exon2	c.C256A	p.L86I	TACTTGCTACCAG	.	153	17	107	0	.	0	0	0	0	0	4
GTPBP10	85865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	90003657	90003657	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GTPBP10-68	NM_033107	exon6	c.G580T	p.D194Y	TACAGTGATTTCA	.	69	15	57	0	.	0	0	0	0	0	5
LRRD1	401387	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	91792948	91792948	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001161528	exon1	c.C1569T	p.L523L	AAATATGAGGAGT	.	92	7	41	0	.	0	0	0	0	0	3
KRIT1	889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	91864777	91864777	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRIT1-132	NM_194456	exon9	c.G669T	p.E223D	TGCTTTCTCTAGG	.	99	13	74	0	.	8	6	2	0	0	4
ATP5J2-PTCD1	100526740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99023158	99023158	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001198879	exon7	c.G1144T	p.G382C	CTAGGCCACAGTC	.	94	25	78	0	.	5	4	1	0	0	5
PVRIG	79037	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99817600	99817600	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PVRIG-24	NM_024070	exon2	c.C67A	p.H23N	ATGGGGCACCGGA	.	309	76	231	1	.	3	2	1	0	0	4
MUC17	140453	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100674469	100674469	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUC17-95	NM_001040105	exon2	c.C151A	p.Q51K	AACCGTCAGTGCC	.	265	72	196	1	.	0	0	0	0	0	4
RELN	5649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	103180836	103180836	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RELN-574	NM_173054	exon44	c.G6738T	p.V2246V	TAGGAGCACGGGT	.	107	37	55	0	.	0	0	0	0	0	5
RELN	5649	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	103243894	103243894	+	Missense_Mutation	SNP	C	C	G	rs114389730	unknown;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RELN-574	NM_173054	exon24	c.G3190C	p.A1064P	GAAGGGCAGCTTC	.	137	43	115	1	C|0.998;T|0.002	0	0	0	0	0	3
IFRD1	3475	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	112090794	112090794	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IFRD1-91	NM_001007245	exon2	c.C51A	p.G17G	TGCTGGCGGCGGC	.	283	42	97	0	.	13	8	5	0	0	4
POT1	25913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	124491967	124491967	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POT1-227	NM_015450	exon11	c.C908A	p.S303X	ACATCTGAATGCT	.	185	47	151	0	.	5	4	1	0	0	5
SND1	27044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127631020	127631020	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SND1-92	NM_014390	exon16	c.G1690T	p.A564S	AGAGGAGCCCGAA	.	109	33	80	0	.	94	64	30	0	0	5
PLXNA4	91584	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	131872275	131872275	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLXNA4-91	NM_020911	exon15	c.G2948T	p.S983I	ACGTTGCTTCCGG	.	116	26	91	2	.	0	0	0	0	0	3
PARP12	64761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139727101	139727101	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PARP12-525	NM_022750	exon10	c.C1603A	p.L535M	GGGCCAGGTTCTG	.	184	46	169	0	.	17	10	7	0	0	5
TAS2R4	50832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141478815	141478815	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAS2R4-90	NM_016944	exon1	c.C527A	p.S176Y	TCTTGTCTTTAGT	.	202	23	135	1	.	0	0	0	0	0	3
EPHA1	2041	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	143098540	143098540	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPHA1-1436	NM_005232	exon3	c.G309T	p.V103V	GTCCCGCACGGTG	.	170	20	134	1	.	0	0	0	0	0	3
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151879463	151879463	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLL3-1398	NM_170606	exon36	c.G5482T	p.E1828X	ACAGTTCTTTATG	.	158	41	142	0	.	2	1	1	0	0	5
EFHA2	286097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	16944544	16944544	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EFHA2-91	NM_181723	exon7	c.G849T	p.L283L	AATGCTGGTAAGA	.	28	5	57	0	.	0	0	0	0	0	4
ENTPD4	9583	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	23294562	23294562	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ENTPD4-92	NM_004901	exon10	c.C1259A	p.P420Q	TGAATTGGGGGCT	.	116	33	149	1	.	10	6	4	0	0	4
NEFM	4741	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	24774959	24774959	+	Nonsense_Mutation	SNP	G	G	T	rs138461187	by1000genomes;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NEFM-577	NM_005382	exon3	c.G1591T	p.E531X	GAAGAAGAAGGCC	.	63	11	88	1	G|0.999;A|0.001	11	10	1	0	0	3
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48790325	48790325	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRKDC-1515	.	.	.	.	ATTCTTCCATGAC	.	79	39	96	0	.	2	0	2	0	0	4
PCMTD1	115294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	52744112	52744112	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCMTD1-68	NM_052937	exon5	c.C598A	p.R200R	CAGTTCGCATAAT	.	38	7	40	0	.	7	7	0	0	0	4
SLCO5A1	81796	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	70591644	70591644	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLCO5A1-94	NM_001146008	exon7	c.G1993T	p.A665S	GTTGGGCACATGC	.	185	78	207	1	.	0	0	0	0	0	4
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	72973992	72973992	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPA1-230	NM_007332	exon7	c.G812T	p.G271V	CACCTTCCCTTCT	.	93	7	118	0	.	0	0	0	0	0	3
PI15	51050	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	75737605	75737605	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PI15-515	NM_015886	exon2	c.G121C	p.E41Q	GATATTGAAGCAG	.	109	18	102	1	.	0	0	0	0	0	3
SLC10A5	347051	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	82607084	82607084	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC10A5-90	NM_001010893	exon1	c.G124T	p.E42X	TGGTTTCTTCAGT	.	69	50	95	1	.	0	0	0	0	0	4
RMDN1	51115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87519275	87519275	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_016033	exon2	c.G196T	p.E66X	AAGTTTCAAAACC	.	78	34	92	0	.	7	7	0	0	0	5
KIAA1429	25962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	95538629	95538629	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1429-92	NM_015496	exon8	c.G1843T	p.E615X	AGGATTCCAAAAG	.	59	8	66	0	.	3	1	2	0	0	4
GDF6	392255	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	97157039	97157039	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GDF6-228	NM_001001557	exon2	c.G1120A	p.A374T	GGGGCGCGATAAT	.	159	10	140	0	.	0	0	0	0	0	3
VPS13B	157680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	100733234	100733234	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VPS13B-301	NM_017890	exon39	c.G7084T	p.D2362Y	ACAGAGGATCCAG	.	84	35	71	0	.	2	2	0	0	0	5
UBR5	51366	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	103284937	103284937	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBR5-761	NM_015902	exon48	c.C6793A	p.R2265R	ATCTTCGACCAAA	.	112	60	147	1	.	2	1	1	0	0	3
TRPS1	7227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	116632191	116632191	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPS1-229	NM_014112	exon3	c.G134T	p.G45V	TTCTTTCCAGATA	.	85	36	109	0	.	0	0	0	0	0	5
SQLE	6713	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	126030309	126030309	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SQLE-523	NM_003129	exon8	c.C1213A	p.L405I	GTTCTTCTTTTGG	.	36	32	50	1	.	1	0	1	0	0	4
SLC1A1	6505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	4583052	4583052	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC1A1-514	NM_004170	exon11	c.C1208A	p.S403Y	CCACATCTGCCAG	.	103	17	102	0	.	3	3	0	0	0	4
RANBP6	26953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	6013222	6013222	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RANBP6-229	NM_012416	exon1	c.G2386T	p.E796X	AGTGTTCATCATT	.	83	24	64	0	.	14	6	8	0	0	5
MPDZ	8777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	13176296	13176296	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MPDZ-231	NM_003829	exon20	c.G2770T	p.G924W	CAGGCCCCATACT	.	137	11	108	0	.	0	0	0	0	0	3
MPDZ	8777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	13188983	13188983	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MPDZ-231	NM_003829	exon17	c.G2164T	p.D722Y	CTGGATCAATTGG	.	74	16	54	0	.	0	0	0	0	0	5
MLLT3	4300	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	20414048	20414048	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLLT3-660	NM_004529	exon5	c.G796T	p.D266Y	TACTATCTGGTTT	.	243	31	155	1	.	8	5	3	0	0	4
ACO1	48	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	32430444	32430444	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACO1-226	NM_002197	exon14	c.C1598A	p.S533Y	TACTATCTGGAAA	.	180	20	125	0	.	27	24	3	0	0	4
TPM2	7169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35682151	35682151	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TPM2-515	NM_213674	exon9	c.C782A	p.A261D	GCACTGGCCAAGG	.	115	23	75	0	.	9	8	1	0	0	5
SPAG8	26206	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35810505	35810505	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPAG8-91	NM_001039592	exon5	c.G1131T	p.E377D	CTCAACCTCGAAG	.	148	34	102	1	.	1	1	0	0	0	3
SPATA31A3	727830	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	40705691	40705691	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001083124	exon4	c.C3348A	p.P1116P	GAAGCCCAACTTA	.	429	61	321	0	.	0	0	0	0	0	3
MAMDC2	256691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	72741314	72741314	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAMDC2-91	NM_153267	exon6	c.G883T	p.A295S	TTCAGTGCTCCTT	.	131	25	86	0	.	1	1	0	0	0	5
TRPM6	140803	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	77411734	77411734	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPM6-335	NM_017662	exon18	c.C2314A	p.P772T	ACTGGGGAACATG	.	170	56	140	1	.	0	0	0	0	0	4
ERCC6L2	375748	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	98728916	98728916	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001010895	exon14	c.C2053A	p.H685N	AAAGAGCATCAAG	.	139	37	144	1	.	1	0	1	0	0	4
GALNT12	79695	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	101606450	101606450	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GALNT12-92	NM_024642	exon8	c.C1417A	p.Q473K	GGACACCAGGTCA	.	122	8	103	0	.	0	0	0	0	0	3
OR13C5	138799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107361140	107361140	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR13C5-72	NM_001004482	exon1	c.G555T	p.M185I	CAGTTTCATGACA	.	451	51	376	0	.	0	0	0	0	0	5
C9orf84	158401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114508596	114508596	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C9orf84-92	NM_173521	exon8	c.C805A	p.L269I	GGAATAGAGGAGT	.	75	15	58	0	.	1	1	0	0	0	5
PAPPA	5069	ucsc.edu;bcgsc.ca;mdanderson.org	37	9	118950037	118950037	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAPPA-77	NM_002581	exon2	c.C1020A	p.S340R	TGCCAGCTACAAT	.	160	36	130	2	.	0	0	0	0	0	3
PHF19	26147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	123624881	123624881	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHF19-136	NM_015651	exon11	c.G1115T	p.G372V	CTCTTTCCTCTCT	.	105	24	91	0	.	4	4	0	0	0	4
STXBP1	6812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	130427557	130427557	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STXBP1-91	NM_001032221	exon8	c.C610A	p.L204I	GCTCAGCTAATCC	.	133	22	140	0	.	15	13	2	0	0	4
TBC1D13	54662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131559410	131559410	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBC1D13-90	NM_018201	exon7	c.G460T	p.E154X	CAGAATGAGTTTG	.	133	39	98	0	.	23	20	3	0	0	5
RAPGEF1	2889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	134501621	134501621	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAPGEF1-849	NM_198679	exon10	c.G1393T	p.G465W	GCTGCCCTGGGGC	.	172	51	128	0	.	22	18	4	0	0	5
ARSH	347527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	2942061	2942061	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARSH-130	NM_001011719	exon6	c.902-1G>T	.	TCTCCAGGTAAAA	.	272	59	205	0	.	0	0	0	0	0	4
WWC3	55841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	10106875	10106875	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WWC3-134	NM_015691	exon21	c.C2983A	p.Q995K	CTGCGGCAGCGGT	.	239	60	119	0	.	7	7	0	0	0	5
DDX53	168400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	23019100	23019100	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DDX53-228	NM_182699	exon1	c.C926A	p.A309D	AGTTGGCTCTTCA	.	257	57	187	0	.	0	0	0	0	0	5
MAGEB10	139422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	27840275	27840275	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAGEB10-130	NM_182506	exon3	c.C852A	p.S284R	AACCAGCAAGATG	.	116	15	80	0	.	0	0	0	0	0	4
MED14	9282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	40568698	40568698	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MED14-289	NM_004229	exon10	c.C1187A	p.S396X	TCTATTGATAAGT	.	141	16	98	0	.	8	8	0	0	0	4
ZNF182	7569	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	47836739	47836739	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF182-132	NM_006962	exon7	c.C747A	p.L249L	TACAATGAGGTGT	.	85	20	53	1	.	6	3	3	0	0	3
TBC1D25	4943	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	48417292	48417292	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBC1D25-131	NM_002536	exon4	c.G396T	p.L132F	CCCATTGCTAGAA	.	232	16	184	1	.	1	1	0	0	0	3
WDR45	11152	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	48934319	48934319	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDR45-131	NM_007075	exon6	c.G329A	p.R110H	CGCATGCGCACAG	.	445	92	287	2	.	114	114	0	0	0	3
USP27X	389856	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49646192	49646192	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP27X-472	NM_001145073	exon1	c.G1282T	p.E428X	GAGTCAGAAAAAG	.	336	68	243	1	.	17	17	0	0	0	4
CCNB3	85417	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	50052072	50052072	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCNB3-482	NM_033031	exon5	c.G903T	p.K301N	TAGGAAGCCACCA	.	144	26	86	1	.	1	1	0	0	0	4
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53607986	53607986	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HUWE1-280	NM_031407	exon43	c.G5521T	p.V1841F	GAACAACCTAGTA	.	129	21	87	0	.	0	0	0	0	0	5
YIPF6	286451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	67741213	67741213	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	YIPF6-130	NM_001195214	exon4	c.180-1G>T	.	TTCTCAGAATGCT	.	153	82	84	0	.	0	0	0	0	0	4
MED12	9968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	70352313	70352313	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MED12-272	NM_005120	exon31	c.C4340A	p.A1447D	AGGCTGCTGGGGA	.	301	29	219	0	.	26	24	2	0	0	4
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70596893	70596893	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAF1-900	NM_004606	exon5	c.C626A	p.S209X	CTGACTCAGAATC	.	211	43	139	0	.	0	0	0	0	0	5
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	70598293	70598293	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAF1-900	NM_004606	exon7	c.G1202T	p.R401I	AATCTAGAATGAT	.	202	12	169	0	.	0	0	0	0	0	3
ATRX	546	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	76918898	76918898	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATRX-248	NM_000489	exon12	c.G4093T	p.E1365X	TGACTTCTTTATG	.	128	26	108	1	.	1	1	0	0	0	3
XKRX	402415	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	100169962	100169962	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	XKRX-130	NM_212559	exon3	c.G715T	p.E239X	GGACTTCTAGTGG	.	358	64	296	2	.	0	0	0	0	0	3
DRP2	1821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100500030	100500030	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DRP2-132	NM_001939	exon10	c.G1079T	p.R360I	GGGAAAGAGCAAT	.	314	41	218	0	.	0	0	0	0	0	5
VSIG1	340547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107320376	107320376	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VSIG1-132	NM_001170553	exon8	c.C1037A	p.T346N	ATGAGACTGGCCC	.	296	62	157	0	.	0	0	0	0	0	5
IGSF1	3547	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	130411109	130411109	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGSF1-133	NM_001170961	exon14	c.G2427T	p.Q809H	CATATGCTGGTGG	.	136	10	84	0	.	1	1	0	0	0	3
TFDP3	51270	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	132352122	132352122	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TFDP3-131	NM_016521	exon1	c.C166A	p.Q56K	CCACTTGCTGGTC	.	234	23	170	0	.	0	0	0	0	0	3
PNMA3	29944	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	152226031	152226031	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PNMA3-600	NM_013364	exon2	c.G619A	p.E207K	CTGATGGAATGCT	.	102	12	64	1	.	5	5	0	0	0	3
ATP2B3	492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152827696	152827696	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP2B3-109	NM_001001344	exon18	c.G3155T	p.G1052V	TCTGGGGACAGGT	.	124	32	79	0	.	0	0	0	0	0	5
LIPE	3991	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	42907077	42907078	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LIPE-154	NM_005357	exon9	c.2649_2650insG	p.G883fs	GGAGTTTCCCCTC	.	39	20	29	0	.	0	0	0	0	0	3
SLC44A3	126969	broad.mit.edu;bcgsc.ca	37	1	95310885	95310885	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC44A3-91	NM_001114106	exon9	c.G937T	p.V313F	TTGACAGTTGAGC	.	55	29	61	2	.	4	1	3	0	0	2
MRPL9	65005	bcgsc.ca	37	1	151735532	151735532	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MRPL9-91	NM_031420	exon2	c.C244A	p.L82M	CCACCAGCTTATA	.	192	73	156	2	.	25	20	5	0	0	1
YY1AP1	55249	broad.mit.edu;bcgsc.ca	37	1	155630075	155630075	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	YY1AP1-93	NM_001198903	exon10	c.C2040A	p.I680I	AGGTTTGATACAG	.	257	25	270	1	.	32	27	5	0	0	2
FH	2271	ucsc.edu	37	1	241667408	241667408	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FH-416	NM_000143	exon7	c.G1042T	p.G348C	GAGGACCAGAACC	.	79	14	144	2	.	116	95	21	0	0	1
EXO1	9156	broad.mit.edu	37	1	242042620	242042620	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EXO1-661	NM_130398	exon13	c.G2084T	p.C695F	CTCAGTGCTCTAG	.	28	6	28	0	.	4	2	2	0	0	1
AGAP7	653268	bcgsc.ca	37	10	51464918	51464918	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001077685	exon7	c.G1538T	p.G513V	TCATTGCCAATAG	.	116	16	137	0	.	17	9	8	0	0	1
GABARAPL1	23710	broad.mit.edu;bcgsc.ca	37	12	10365807	10365807	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GABARAPL1-90	NM_031412	exon1	c.G79T	p.D27Y	TATCCGGACAGGG	.	258	71	123	2	.	121	68	53	0	0	2
LRRK2	120892	broad.mit.edu	37	12	40689345	40689345	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRK2-533	NM_198578	exon23	c.G2995T	p.A999S	ATTGATGCCCTAA	.	93	7	97	2	.	2	0	2	0	0	1
PAN2	9924	ucsc.edu;bcgsc.ca	37	12	56716450	56716450	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAN2-702	NM_001127460	exon18	c.C2598A	p.G866G	CAGGCTGCCCCCT	.	178	44	124	2	.	12	8	4	0	0	2
PRDM4	11108	broad.mit.edu;bcgsc.ca	37	12	108133237	108133237	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRDM4-154	NM_012406	exon11	c.G2016T	p.K672N	AAGATTCTTCTCC	.	173	20	142	1	.	34	32	2	0	0	2
BRF1	2972	broad.mit.edu;ucsc.edu	37	14	105688210	105688210	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BRF1-155	NM_001519	exon11	c.G1090T	p.D364Y	CTGTGTCCTCCTC	.	83	4	77	0	.	17	14	3	0	0	2
CD276	80381	broad.mit.edu	37	15	73994904	73994904	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CD276-91	NM_025240	exon3	c.G388T	p.G130C	GATTTCGGCAGCG	.	149	17	70	2	.	112	107	5	0	0	1
BCKDK	10295	broad.mit.edu;bcgsc.ca	37	16	31121421	31121421	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BCKDK-765	NM_005881	exon5	c.C399A	p.F133L	TGCCTTCCAGAAG	.	196	8	168	0	.	137	134	3	0	0	2
ITGAM	3684	ucsc.edu;bcgsc.ca	37	16	31336693	31336693	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITGAM-226	NM_001145808	exon20	c.G2476T	p.D826Y	CCGCTTGACCTGT	.	190	85	162	2	.	3	1	2	0	0	2
NPEPPS	9520	broad.mit.edu;bcgsc.ca	37	17	45668234	45668234	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NPEPPS-90	NM_006310	exon10	c.G1247T	p.S416I	ATAACAGCCATCC	.	217	17	287	0	.	45	39	6	0	0	2
MRPL38	64978	broad.mit.edu;bcgsc.ca	37	17	73898152	73898152	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MRPL38-46	NM_032478	exon3	c.C331A	p.Q111K	GCTCCTGGATGGC	.	110	22	165	2	.	45	42	3	0	0	2
ROCK1	6093	broad.mit.edu	37	18	18586509	18586509	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ROCK1-1026	NM_005406	exon16	c.G1688T	p.R563I	CTCAATCTTACAG	.	60	9	61	2	.	6	3	3	0	0	1
STXBP2	6813	broad.mit.edu;bcgsc.ca	37	19	7708095	7708095	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STXBP2-91	NM_001272034	exon13	c.C1104T	p.F368F	GCACTTCAAGGGC	.	86	26	52	1	.	44	36	8	0	0	2
LPPR2	0	broad.mit.edu	37	19	11472132	11472132	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LPPR2-153	NM_022737	exon6	c.G631T	p.A211S	GATGCGGCCCTCT	.	118	7	15	0	.	17	15	2	0	0	1
LRP3	4037	hgsc.bcm.edu;broad.mit.edu	37	19	33696766	33696766	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRP3-92	NM_002333	exon5	c.G1090T	p.V364L	TACCAGGTGAAGG	.	83	6	35	0	.	27	19	8	0	0	2
SCAF1	58506	broad.mit.edu;bcgsc.ca	37	19	50157655	50157655	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCAF1-68	NM_021228	exon8	c.G3366T	p.A1122A	CCGAGCGAAGGCC	.	230	10	176	0	.	110	104	5	1	0	2
ZNF584	201514	bcgsc.ca	37	19	58929136	58929136	+	Missense_Mutation	SNP	G	G	T	rs3764534	byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF584-90	NM_173548	exon4	c.G1251T	p.K417N	TGGGAAGGTCGTT	.	258	24	188	1	G|0.453;A|0.547	44	39	5	0	0	1
MRPS9	64965	broad.mit.edu	37	2	105654631	105654631	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MRPS9-90	NM_182640	exon1	c.G81T	p.K27N	CCGGAAGCAAGGC	.	113	23	108	2	.	9	6	3	0	0	1
MERTK	10461	ucsc.edu;bcgsc.ca	37	2	112740485	112740485	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MERTK-1463	NM_006343	exon8	c.G1211T	p.R404I	ACATCAGATGGAT	.	140	69	191	2	.	17	4	13	0	0	2
UBOX5	22888	broad.mit.edu;bcgsc.ca	37	20	3090889	3090889	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBOX5-227	NM_014948	exon5	c.G1489T	p.E497X	CCGGCTCCTTTTT	.	106	40	84	2	.	21	14	7	0	0	2
NECAB3	63941	broad.mit.edu	37	20	32248098	32248098	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NECAB3-91	NM_031232	exon6	c.C491A	p.S164X	GTATCTGACGCCC	.	40	8	51	1	.	38	28	10	0	0	1
SETD2	29072	broad.mit.edu;bcgsc.ca	37	3	47161746	47161746	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SETD2-1273	NM_014159	exon3	c.G4380T	p.W1460C	TTCCTTCCATCGC	.	60	24	90	2	.	5	3	2	0	0	2
FLNB	2317	broad.mit.edu	37	3	58145372	58145372	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FLNB-593	NM_001164317	exon43	c.C7073A	p.S2358Y	GCCCCTCTGGAGC	.	36	8	52	2	.	100	78	22	0	0	1
NMNAT3	349565	ucsc.edu;bcgsc.ca	37	3	139292460	139292460	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NMNAT3-90	NM_178177	exon4	c.C245A	p.A82E	AAGAGTGCCTTGC	.	115	51	159	2	.	7	0	7	0	0	2
USP13	8975	ucsc.edu	37	3	179483602	179483602	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP13-659	NM_003940	exon19	c.G2379T	p.K793N	GGCCAAGCCCGAA	.	76	11	123	2	.	7	5	2	0	0	1
TMEM175	84286	broad.mit.edu;ucsc.edu	37	4	947039	947039	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM175-90	NM_032326	exon8	c.C524A	p.S175Y	AGCGCTCTGCCCA	.	105	16	84	1	.	98	92	6	0	0	2
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	113	15	8	0	C|0.960;G|0.040	55	18	37	0	0	1
C1GALT1	56913	broad.mit.edu;bcgsc.ca	37	7	7283285	7283285	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C1GALT1-90	NM_020156	exon4	c.C1019T	p.P340L	CCTTACCTGAACG	.	140	53	86	1	.	46	25	21	0	0	2
THEM6	51337	broad.mit.edu;bcgsc.ca	37	8	143816819	143816819	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_016647	exon2	c.A589G	p.M197V	CTCCGCATGGAGA	.	45	16	79	2	.	16	7	9	0	0	2
PYCRL	65263	bcgsc.ca	37	8	144687947	144687947	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PYCRL-90	NM_023078	exon6	c.C784A	p.Q262K	CGCCCTGCTCCAG	.	96	44	53	2	.	20	4	16	0	0	1
LURAP1L	286343	broad.mit.edu	37	9	12821687	12821687	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_203403	exon2	c.C615A	p.S205R	TGACAGCTCCCTC	.	110	7	116	2	.	12	8	4	0	0	1
YIPF6	286451	broad.mit.edu	37	X	67751770	67751770	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	YIPF6-130	NM_173834	exon7	c.C640G	p.L214V	AGAGCCCTAGCTG	.	91	11	75	2	.	21	8	13	0	0	1
VPS13D	55187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12294377	12294377	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VPS13D-95	NM_015378	exon2	c.C54G	p.V18V	ATATGTCAATAAC	.	172	56	122	0	.	1	1	0	0	0	5
PRAMEF4	400735	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	12939472	12939472	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRAMEF4-45	NM_001009611	exon4	c.G1330A	p.V444M	CCCTCACTCTGTT	.	1237	116	776	0	.	0	0	0	0	0	3
MYOM3	127294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	24385424	24385424	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYOM3-93	NM_152372	exon36	c.T4040A	p.M1347K	TCTTCCATGATAG	.	123	34	99	0	.	0	0	0	0	0	5
NIPAL3	57185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	24786973	24786973	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NIPAL3-90	NM_020448	exon10	c.G865C	p.A289P	GCAGGTGCAATAT	.	129	51	86	0	.	0	0	0	0	0	5
BAI2	576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32209956	32209956	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BAI2-526	NM_001703	exon6	c.G925A	p.D309N	CCGGGTCGCCTAC	.	86	30	32	0	.	0	0	0	0	0	5
EPHA10	284656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	38230726	38230726	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPHA10-1246	NM_001099439	exon1	c.G13C	p.A5P	GACCGGCGCAGGT	.	71	28	28	0	.	0	0	0	0	0	5
EXO5	64789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	40981323	40981323	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_022774	exon3	c.C1107G	p.V369V	CCAAGTCAAAAAA	.	119	31	71	0	.	16	10	6	0	0	5
TTC4	7268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	55188440	55188440	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTC4-90	NM_004623	exon5	c.C562G	p.L188V	AAGCTTCTGGAAA	.	244	51	107	0	.	16	9	7	0	0	5
SGIP1	84251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67098763	67098763	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SGIP1-93	NM_032291	exon3	c.G85A	p.D29N	TCACCAGATAGAG	.	87	39	45	0	.	0	0	0	0	0	5
ZRANB2	9406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	71538205	71538205	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZRANB2-92	NM_005455	exon5	c.G328A	p.E110K	CATTTTCTCTTTC	.	161	32	165	0	.	14	11	3	0	0	5
FPGT-TNNI3K	100526835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	74929142	74929142	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001199327	exon23	c.A2332T	p.M778L	GCAGACATGGCTT	.	191	98	107	0	.	0	0	0	0	0	5
C1orf173	127254	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	75038013	75038013	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C1orf173-94	NM_001002912	exon14	c.G3381C	p.E1127D	TTCGTTCTCAGCA	.	18	6	24	0	.	0	0	0	0	0	3
SLC44A5	204962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	75805310	75805310	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC44A5-95	NM_001130058	exon4	c.C58A	p.P20T	TCCTTGGATCACC	.	57	37	30	0	.	0	0	0	0	0	5
WDR47	22911	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	109544988	109544988	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDR47-91	NM_001142550	exon7	c.A1315G	p.R439G	TTTGCCTATAATA	.	28	13	36	0	.	0	0	0	0	0	4
CEPT1	10390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	111725483	111725483	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CEPT1-90	NM_001007794	exon7	c.C909A	p.I303I	AATGATCTACAAG	.	212	104	152	0	.	15	4	11	0	0	5
HSD3B1	3283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	120056635	120056635	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HSD3B1-92	NM_000862	exon4	c.G489A	p.E163E	TGCTGAGAAGGCT	.	76	32	87	0	.	0	0	0	0	0	5
NBPF7	343505	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	120385066	120385066	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NBPF7-24	NM_001047980	exon2	c.G328C	p.E110Q	GCTCCTCAGCTTG	.	69	37	96	0	.	1	1	0	0	0	4
ADAM30	11085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	120438173	120438173	+	Missense_Mutation	SNP	G	G	A	rs200088734	unknown;alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAM30-228	NM_021794	exon1	c.C787T	p.R263C	CAACGCGTATTTT	.	30	12	63	0	.	0	0	0	0	0	5
C1orf54	79630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150248174	150248174	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C1orf54-90	NM_024579	exon3	c.T155C	p.I52T	TCACCATTGATTA	.	199	85	124	0	.	54	53	1	0	0	5
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152286710	152286710	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FLG-106	NM_002016	exon3	c.G652A	p.E218K	TATTTTCATAATC	.	123	25	97	0	.	0	0	0	0	0	5
LCE4A	199834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152681610	152681610	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LCE4A-90	NM_178356	exon1	c.A59G	p.K20R	TCCCCAAGTATCC	.	356	66	142	0	.	0	0	0	0	0	5
SPRR4	163778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152944424	152944424	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPRR4-68	NM_173080	exon2	c.C58A	p.Q20K	GCCCAGCAGCAGC	.	423	73	164	0	.	0	0	0	0	0	5
ADAM15	8751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155028275	155028275	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAM15-651	NM_001261464	exon7	c.G652A	p.V218M	CGGGATGTGGTAA	.	473	183	195	0	.	0	0	0	0	0	5
BCAN	63827	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156628418	156628418	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BCAN-516	NM_021948	exon13	c.C2521T	p.R841C	GTGCTTCGCTACC	.	594	118	169	1	.	0	0	0	0	0	3
ATP1A4	480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160141399	160141399	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP1A4-94	NM_144699	exon12	c.G1706T	p.S569I	TGCCTAGCAGCTT	.	30	25	36	0	.	0	0	0	0	0	5
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	176852120	176852120	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASTN1-319	NM_207108	exon20	c.G3237A	p.L1079L	AAAGCTCAGCACT	.	218	82	169	0	.	0	0	0	0	0	5
ACBD6	84320	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	180471345	180471345	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACBD6-91	NM_032360	exon1	c.G57C	p.L19L	TGAGCTCAGCTCT	.	313	122	240	2	.	39	19	20	0	0	4
RNF2	6045	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	185069018	185069018	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RNF2-658	NM_007212	exon6	c.C833G	p.S278X	GTGAATCAAACCA	.	334	121	254	2	.	15	13	2	0	0	3
GPATCH2	55105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	217793701	217793701	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPATCH2-91	NM_018040	exon2	c.G197T	p.R66M	CTTTTCCTTGCCT	.	85	60	58	0	.	2	0	2	0	0	5
MARK1	4139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	220835222	220835222	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MARK1-802	NM_018650	exon18	c.G2102T	p.R701L	CTTTGCGGTTCAC	.	191	147	163	1	.	9	0	9	0	0	4
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228471220	228471220	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OBSCN-403	NM_001271223	exon38	c.C10041T	p.F3347F	CTGCTTCACAGAG	.	318	102	181	0	.	0	0	0	0	0	5
OR2W5	441932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247654468	247654468	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2W5-115	NM_001004698	exon1	c.C39T	p.I13I	ATTCATCCTGGTG	.	143	106	88	0	.	0	0	0	0	0	5
FBXO18	84893	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	5979171	5979172	+	Frame_Shift_Del	DEL	GC	GC	-	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXO18-228	NM_032807	exon22	c.3213_3214del	p.1071_1072del	GCAGGTGCGCGCC	.	239	76	181	0	.	0	0	0	0	0	3
ITGA8	8516	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	15761654	15761654	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITGA8-230	NM_003638	exon1	c.C117T	p.F39F	CAGGTTGAACGCC	.	44	14	16	0	.	0	0	0	0	0	4
WDFY4	57705	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	50184861	50184861	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDFY4-22	NM_020945	exon59	c.C9128A	p.A3043E	CCTGTGCGGGAGC	.	208	80	135	1	.	1	1	0	0	0	3
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	61847904	61847904	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANK3-107	NM_001149	exon8	c.942+1G>T	.	ACATTACCTGGAG	.	58	24	47	0	.	0	0	0	0	0	4
HKDC1	80201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71018532	71018532	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HKDC1-95	NM_025130	exon15	c.G2033A	p.G678E	TTCTAGGAACAGG	.	99	30	79	0	.	0	0	0	0	0	5
NRG3	10718	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	84733611	84733611	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NRG3-522	NM_001010848	exon7	c.C1352A	p.P451H	TCGGCCCCCAGTC	.	298	129	159	1	.	0	0	0	0	0	4
LRIT2	340745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	85982398	85982398	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRIT2-92	NM_001017924	exon3	c.G931T	p.E311X	CCAGCTCTGACAG	.	364	137	247	0	.	0	0	0	0	0	5
PLCE1	51196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	96084321	96084321	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLCE1-229	NM_016341	exon31	c.G6717A	p.V2239V	GCAGGTGCAGGTA	.	90	33	72	0	.	0	0	0	0	0	5
HSPA12A	259217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118451896	118451896	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HSPA12A-206	NM_025015	exon6	c.C629G	p.P210R	TTGGCCGGCTGCT	.	141	57	75	0	.	1	1	0	0	0	5
C10orf120	399814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124457937	124457937	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C10orf120-91	NM_001010912	exon3	c.G320C	p.R107T	AGCATTCTGCATT	.	184	68	106	0	.	0	0	0	0	0	5
MKI67	4288	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	129903549	129903549	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MKI67-519	NM_002417	exon13	c.G6555A	p.K2185K	TTTTCCCTTAGGA	.	164	52	167	1	.	8	2	6	0	0	4
BRSK2	9024	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1472024	1472024	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BRSK2-333	NM_001256630	exon14	c.G1633T	p.V545F	CTGCAAGGTGAGT	.	361	155	186	1	.	0	0	0	0	0	3
NUP98	4928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	3752722	3752722	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NUP98-703	NM_005387	exon14	c.C1680A	p.V560V	TGGCCGGACTCTA	.	133	56	108	0	.	2	1	1	0	0	5
OR51E1	143503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4674519	4674519	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR51E1-114	NM_152430	exon2	c.G763T	p.V255L	TTCTATGTACCTT	.	147	41	107	0	.	0	0	0	0	0	5
OR52N2	390077	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	5842285	5842285	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR52N2-70	NM_001005174	exon1	c.C720T	p.F240F	AGCCTTCAGCACC	.	294	101	205	1	.	0	0	0	0	0	3
OR52E6	390078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5862980	5862980	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR52E6-68	NM_001005167	exon1	c.G148T	p.V50L	GGATCACAAAGAA	.	257	61	157	0	.	0	0	0	0	0	5
OR52L1	338751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6007764	6007764	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR52L1-91	NM_001005173	exon1	c.C397A	p.L133I	CCACAAGTACCCC	.	242	75	154	0	.	0	0	0	0	0	5
DNHD1	144132	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6554962	6554962	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNHD1-24	NM_144666	exon14	c.G2557C	p.V853L	GAATACGTACGGG	.	329	122	245	1	.	0	0	0	0	0	3
CALCA	796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	14991506	14991506	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CALCA-514	NM_001033953	exon3	c.C202G	p.Q68E	GCTCCTGCTCCAG	.	346	105	252	0	.	0	0	0	0	0	5
LUZP2	338645	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	25071584	25071584	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LUZP2-92	NM_001009909	exon10	c.766delC	p.P256fs	TTTAAGCCTCAAC	.	52	21	49	0	.	0	0	0	0	0	3
FIBIN	387758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	27016195	27016195	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FIBIN-68	NM_203371	exon1	c.G122T	p.G41V	CCGATGGGGACTA	.	165	66	92	0	.	0	0	0	0	0	5
HIPK3	10114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	33363182	33363182	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIPK3-336	NM_001048200	exon8	c.G1847T	p.C616F	TTGGTTGTGGTGA	.	120	40	87	0	.	1	1	0	0	0	5
PAMR1	25891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	35547114	35547114	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAMR1-70	NM_001001991	exon1	c.C20A	p.T7K	AACTGCGTCCAGC	.	112	26	72	0	.	0	0	0	0	0	5
LRRC4C	57689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	40136500	40136500	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC4C-521	NM_001258419	exon7	c.C1343T	p.T448I	GGAGTAGTGGTTG	.	227	77	171	0	.	0	0	0	0	0	5
OR4P4	81300	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55405833	55405833	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4P4-68	.	.	.	.	CTGGACCATGGAA	.	19	11	30	0	.	0	0	0	0	0	3
OR10W1	81341	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58035112	58035112	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR10W1-69	NM_207374	exon1	c.G219T	p.L73L	GTTGGCCAGGATA	.	130	49	100	1	.	0	0	0	0	0	4
OR5B12	390191	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	58206694	58206694	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR5B12-68	NM_001004733	exon1	c.G931T	p.G311X	TGAATCCTATAGA	.	25	10	33	0	.	0	0	0	0	0	4
TMEM138	51524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61133533	61133533	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM138-90	NM_016464	exon3	c.G145A	p.V49I	ATTGCAGTCCTCT	.	152	47	107	0	.	55	25	30	0	0	5
SCGB2A1	4246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61978049	61978049	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCGB2A1-90	NM_002407	exon2	c.C220G	p.L74V	AGAACTCTGAAAA	.	104	39	59	0	.	0	0	0	0	0	5
MUS81	80198	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65631183	65631183	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUS81-227	NM_025128	exon9	c.A952G	p.R318G	AATCCTAGAGACC	.	340	114	208	1	.	4	1	3	0	0	3
XRRA1	143570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	74563036	74563036	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	XRRA1-68	NM_182969	exon13	c.G1238A	p.R413Q	ATACCTCGTGTAT	.	164	68	104	0	.	0	0	0	0	0	5
SLC36A4	120103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92881943	92881943	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC36A4-93	NM_152313	exon11	c.C1275T	p.S425S	CAATGTGCTGCTG	.	201	81	168	0	.	33	22	11	0	0	5
KIAA1731	85459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	93457488	93457488	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1731-22	NM_033395	exon22	c.G6265C	p.D2089H	GATTTTGACTTAT	.	66	16	49	0	.	6	4	2	0	0	5
VSTM5	387804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	93554296	93554296	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001144871	exon2	c.C285A	p.D95E	GACTCTGTCCTTG	.	362	125	265	0	.	0	0	0	0	0	5
AASDHPPT	60496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105950341	105950341	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AASDHPPT-90	NM_015423	exon2	c.C331A	p.H111N	ATCTCTCATCAAG	.	134	44	118	0	.	17	12	5	0	0	5
C11orf87	399947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	109294764	109294764	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C11orf87-92	NM_207645	exon2	c.C405G	p.P135P	GCAGCCCCGGGAC	.	67	31	18	0	.	0	0	0	0	0	4
CBL	867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	119149280	119149280	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CBL-4020	NM_005188	exon9	c.G1288T	p.V430L	CCCATCGTGGTAG	.	206	58	197	0	.	1	0	1	0	0	5
PVRL1	5818	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	119510594	119510594	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PVRL1-90	NM_203285	exon6	c.C1132A	p.P378T	TCTCCGGTGGGCT	.	119	35	97	0	.	0	0	0	0	0	4
PVRL1	5818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	119548456	119548456	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PVRL1-90	NM_002855	exon3	c.G542T	p.S181I	ACCACACTGGGAG	.	280	98	246	0	.	3	1	2	0	0	5
TMEM225	338661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123754008	123754008	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM225-93	NM_001013743	exon4	c.T515C	p.L172P	ATGTTCAGGCAGG	.	111	35	91	0	.	0	0	0	0	0	5
NCAPD2	9918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6639952	6639952	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NCAPD2-660	NM_014865	exon30	c.G3933A	p.Q1311Q	TAGCCAGAGAGCG	.	112	48	88	0	.	137	60	77	0	0	5
FAM90A1	55138	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8375115	8375115	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM90A1-91	NM_018088	exon7	c.C698A	p.P233H	CCCGCAGGGCTGC	.	126	25	71	0	.	0	0	0	0	0	4
GPR19	2842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	12814767	12814767	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR19-91	NM_006143	exon4	c.T616A	p.W206R	TGTCCCAGTTGGA	.	82	36	93	0	.	0	0	0	0	0	5
PIK3C2G	5288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	18435177	18435177	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIK3C2G-1312	NM_004570	exon2	c.C162T	p.Y54Y	ACACTACGAGAGT	.	80	21	92	0	.	0	0	0	0	0	5
TMTC1	83857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	29786206	29786206	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMTC1-90	NM_001193451	exon6	c.G1002T	p.L334L	ATAGCACAGGGTC	.	233	86	131	0	.	0	0	0	0	0	5
RAPGEF3	10411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	48131974	48131974	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAPGEF3-660	NM_006105	exon27	c.2455+2T>A	.	CCTCTCACCAGGG	.	204	70	141	0	.	0	0	0	0	0	4
SCN8A	6334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52163733	52163733	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCN8A-29	NM_014191	exon18	c.G3454C	p.E1152Q	CAGCCTGAGGAAT	.	200	63	124	0	.	0	0	0	0	0	5
KRT75	9119	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52827680	52827680	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRT75-90	NM_004693	exon1	c.C409A	p.Q137K	CGATTTGCAGGTG	.	302	84	205	1	.	0	0	0	0	0	4
KRT2	3849	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53044230	53044230	+	Silent	SNP	C	C	A	rs141066050	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRT2-92	NM_000423	exon2	c.G693T	p.G231G	GATATACCCCTGG	.	163	54	113	2	C|1.000;A|0.000	0	0	0	0	0	3
SPRYD3	84926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53470946	53470946	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPRYD3-90	NM_032840	exon2	c.A123T	p.R41R	CTGATATCGGAAA	.	53	13	68	0	.	3	0	3	0	0	5
GRIP1	23426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	66773061	66773061	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRIP1-494	NM_001178074	exon19	c.G2464T	p.G822C	CTTACCCACTGGC	.	152	88	155	0	.	0	0	0	0	0	5
C12orf50	160419	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	88381692	88381692	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C12orf50-93	NM_152589	exon9	c.C752A	p.P251H	GTTGTAGGTACTA	.	111	6	117	0	.	0	0	0	0	0	3
TMPO	7112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	98940140	98940140	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMPO-93	NM_001032283	exon8	c.G994T	p.G332X	TAGGTGGGAGAAA	.	102	31	108	0	.	0	0	0	0	0	5
UTP20	27340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	101723173	101723173	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UTP20-155	NM_014503	exon27	c.G3363A	p.Q1121Q	TTTGCAGATACTG	.	123	45	88	0	.	0	0	0	0	0	5
CHPT1	56994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	102117036	102117036	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHPT1-90	NM_020244	exon6	c.G871C	p.E291Q	GTGTTTGAAAAGC	.	79	37	79	0	.	83	18	65	0	0	5
STAB2	55576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	104107546	104107546	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STAB2-104	NM_017564	exon42	c.G4537T	p.E1513X	TGCCTGGGTAGGT	.	120	36	97	0	.	0	0	0	0	0	5
OAS1	4938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	113348875	113348875	+	Nonsense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OAS1-70	NM_001032409	exon3	c.T489G	p.Y163X	CGGCTATAAACCT	.	202	74	167	0	.	0	0	0	0	0	5
PIWIL1	9271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130830339	130830339	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIWIL1-92	NM_004764	exon4	c.G232A	p.E78K	TTAGCAGAGAGAG	.	142	51	103	0	.	0	0	0	0	0	5
TPTE2	93492	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	20024411	20024411	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TPTE2-92	NM_199254	exon13	c.C876T	p.P292P	TAGAGTGGGGACA	.	249	137	337	0	.	0	0	0	0	0	4
DCLK1	9201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36384973	36384973	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DCLK1-826	NM_004734	exon12	c.G1687T	p.G563X	TTTACCCAGTCTC	.	40	22	43	0	.	0	0	0	0	0	5
MED4	29079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	48655799	48655799	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MED4-187	NM_014166	exon5	c.C490A	p.P164T	TCAGTGGAGCACA	.	58	32	54	0	.	82	8	74	0	0	5
OLFM4	10562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	53624435	53624435	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OLFM4-69	NM_006418	exon5	c.C1062A	p.T354T	CCTGACCACCAAC	.	210	120	196	0	.	0	0	0	0	0	5
DIAPH3	81624	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	60545177	60545177	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DIAPH3-516	NM_001042517	exon16	c.C1768G	p.P590A	GAGGTGGAGGCGG	.	93	64	72	0	.	1	0	1	0	0	4
KLHL1	57626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	70413106	70413106	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLHL1-90	NM_020866	exon7	c.1414+2T>A	.	TTAAATACCTTTG	.	27	17	39	0	.	0	0	0	0	0	4
DCAF11	80344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24584856	24584856	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_181357	exon2	c.A53T	p.E18V	CCTCCGAGGGCTT	.	69	20	57	0	.	6	1	5	0	0	4
FOXG1	2290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	29237443	29237443	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FOXG1-660	NM_005249	exon1	c.C958A	p.R320S	CACCCCCGCGCCA	.	130	46	43	0	.	0	0	0	0	0	5
LRFN5	145581	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	42356008	42356008	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRFN5-97	NM_152447	exon3	c.C180G	p.D60E	GGCAGACAATTTT	.	93	30	129	1	.	0	0	0	0	0	3
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	45645661	45645661	+	Missense_Mutation	SNP	G	G	T	rs146490925	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FANCM-569	NM_020937	exon14	c.G3704T	p.G1235V	ATTTAGGATTCTG	.	23	7	41	0	G|1.000;T|0.000	0	0	0	0	0	4
TXNDC16	57544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	52923853	52923853	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TXNDC16-22	NM_020784	exon17	c.G1658C	p.G553A	ACATATCCTTTTA	.	61	23	61	0	.	0	0	0	0	0	5
TXNDC16	57544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	53004373	53004373	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TXNDC16-22	NM_020784	exon5	c.A261G	p.E87E	TATTTCTTCTTTG	.	29	5	19	0	.	0	0	0	0	0	4
DACT1	51339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	59113119	59113119	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DACT1-291	NM_016651	exon4	c.G1778T	p.G593V	TCCAGGGGCTGGA	.	83	26	52	0	.	0	0	0	0	0	4
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	68251818	68251818	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFYVE26-162	NM_015346	exon19	c.A3481T	p.T1161S	CAAGGGTGCTGCA	.	162	53	124	0	.	2	2	0	0	0	5
ACTN1	87	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	69349604	69349604	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACTN1-514	NM_001102	exon15	c.G1804A	p.G602S	ATTTGCCATTGAT	.	117	32	81	1	.	195	96	99	0	0	4
TTLL5	23093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	76349181	76349181	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTLL5-92	NM_015072	exon30	c.G3676A	p.V1226I	TCCCTGGTTCCCA	.	124	40	77	0	.	36	20	16	0	0	5
ASB2	51676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	94420823	94420823	+	Silent	SNP	C	C	T	rs201823942	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASB2-228	NM_001202429	exon4	c.G318A	p.A106A	GGGGTCCGCAGGC	.	137	53	95	0	C|0.999;T|0.001	0	0	0	0	0	5
SERPINA12	145264	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	94955965	94955965	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SERPINA12-310	NM_173850	exon5	c.G1045T	p.V349L	CGCCCACTTTCAG	.	182	71	131	1	.	0	0	0	0	0	3
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	101347633	101347633	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RTL1-46	NM_001134888	exon1	c.G3493T	p.E1165X	ACAGCTCAGCCAG	.	174	62	80	0	.	0	0	0	0	0	5
CDC42BPB	9578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	103430940	103430940	+	Silent	SNP	C	C	A	rs45512495	byfrequency;alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDC42BPB-581	NM_006035	exon19	c.G2625T	p.A875A	CAGCCGCGCGGAC	.	147	47	56	0	C|0.998;T|0.002	3	2	1	0	0	5
ADSSL1	122622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105208191	105208191	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADSSL1-515	NM_199165	exon9	c.A929C	p.Y310S	GGACCTACCCCTT	.	213	70	152	0	.	0	0	0	0	0	5
NDN	4692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	23931489	23931489	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NDN-90	NM_002487	exon1	c.C876A	p.S292S	GTATCGGGAGGGC	.	26	13	29	0	.	2	2	0	0	0	5
GABRB3	2562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	26806226	26806226	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GABRB3-518	NM_021912	exon8	c.G933T	p.M311I	GCAGCCCATAAGG	.	134	56	122	0	.	0	0	0	0	0	5
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	28422657	28422657	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HERC2-234	NM_004667	exon61	c.9164-2A>G	.	GCCACCTGCAACA	.	120	52	93	0	.	0	0	0	0	0	4
FAM189A1	23359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	29416896	29416896	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM189A1-22	NM_015307	exon10	c.G1297T	p.G433W	CGCTCCCAGGCAC	.	114	57	64	0	.	0	0	0	0	0	5
FMN1	342184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	33192240	33192240	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FMN1-23	NM_001103184	exon10	c.G2925T	p.R975R	TTGTCCCCGAGTC	.	64	19	50	0	.	0	0	0	0	0	4
INO80	54617	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41313297	41313297	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	INO80-72	NM_017553	exon26	c.C3075G	p.Y1025X	ATTGCAGTAAGAA	.	97	35	90	0	.	7	4	3	0	0	4
FBN1	2200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	48714179	48714179	+	Nonsense_Mutation	SNP	C	C	A	rs363811	bycluster;byfrequency;alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBN1-92	NM_000138	exon61	c.G7540T	p.G2514X	TAAATCCGGGAGG	.	253	117	166	1	C|0.994;T|0.006	13	12	1	0	0	3
TRPM7	54822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	50888468	50888468	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPM7-392	NM_017672	exon23	c.C3274G	p.L1092V	CAATAAGAAGATT	.	152	52	160	0	.	0	0	0	0	0	5
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63054564	63054564	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TLN2-573	NM_015059	exon36	c.A4873T	p.N1625Y	GCCATCAACCCCA	.	234	86	106	0	.	1	1	0	0	0	5
IGDCC4	57722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65687496	65687496	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGDCC4-93	NM_020962	exon8	c.G1512T	p.V504V	GTAGGCCACCACG	.	175	65	104	0	.	0	0	0	0	0	5
C15orf60	283677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	73766261	73766261	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C15orf60-46	NM_001042367	exon2	c.T248A	p.L83Q	CACTACTGGTAGG	.	48	10	46	0	.	0	0	0	0	0	4
TBC1D21	161514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74180025	74180025	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBC1D21-92	NM_153356	exon9	c.T842C	p.M281T	TGCAGATGGTGCG	.	164	41	91	0	.	0	0	0	0	0	5
CSPG4	1464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	75969502	75969502	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSPG4-229	NM_001897	exon10	c.T5358A	p.Y1786X	GTGGGCATACACT	.	18	4	14	0	.	2	2	0	0	0	3
ADAMTS7	11173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79063945	79063945	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS7-226	NM_014272	exon15	c.G2358A	p.K786K	AGGCTCCTTGGTG	.	36	13	30	0	.	0	0	0	0	0	5
TMC3	342125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81624991	81624991	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMC3-70	NM_001080532	exon22	c.C3072A	p.P1024P	CAGAGGGGGCTGT	.	276	78	115	0	.	1	1	0	0	0	5
ZNF592	9640	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	85327349	85327349	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF592-96	NM_014630	exon4	c.G1443C	p.K481N	AGGCAAGAAGCAA	.	93	37	68	1	.	1	1	0	0	0	4
AGBL1	123624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86791011	86791011	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_152336	exon6	c.G498T	p.R166R	CCGACGGGGCTTG	.	172	58	80	0	.	0	0	0	0	0	5
FES	2242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91436336	91436336	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FES-546	NM_002005	exon15	c.G1833A	p.L611L	GATCCTGAAGCAG	.	148	58	77	0	.	0	0	0	0	0	5
CHD2	1106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	93499776	93499776	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHD2-229	NM_001271	exon16	c.C1897G	p.L633V	AAAACTCTGATTG	.	72	25	52	0	.	0	0	0	0	0	5
ADAMTS17	170691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	100636657	100636657	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS17-228	NM_139057	exon15	c.G2041T	p.G681W	CAGACCCGATGAT	.	115	29	70	0	.	0	0	0	0	0	5
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2815642	2815642	+	Missense_Mutation	SNP	C	C	A	rs146437403	unknown;alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SRRM2-93	NM_016333	exon11	c.C5113A	p.R1705S	CTGTCCCGTAGAA	.	52	29	75	0	C|1.000;T|0.000	15	0	15	0	0	4
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27523098	27523098	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GTF3C1-94	NM_001520	exon7	c.G1098T	p.R366R	CATATCCCGCTCG	.	236	162	209	1	.	2	0	2	0	0	5
SLC12A3	6559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	56899349	56899349	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC12A3-155	NM_001126108	exon1	c.G202C	p.E68Q	ACATATGAGCACT	.	162	64	105	0	.	0	0	0	0	0	5
CCDC135	84229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57736008	57736008	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC135-90	NM_032269	exon5	c.G665T	p.R222L	TGACGCGGGAGGT	.	263	112	174	0	.	0	0	0	0	0	5
DDX28	55794	broad.mit.edu;ucsc.edu;mdanderson.org	37	16	68056823	68056823	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DDX28-226	NM_018380	exon1	c.C283G	p.Q95E	AGCCTTGAGAGGC	.	26	12	11	0	.	9	3	6	0	0	3
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	72829226	72829226	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFHX3-72	NM_006885	exon9	c.7355delC	p.P2452fs	AGCTCTGGCTTTG	.	70	14	48	0	.	0	0	0	0	0	3
CDH13	1012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	83378568	83378568	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH13-67	NM_001220488	exon7	c.G879T	p.R293R	CTTTCGGGAAGGC	.	116	48	77	0	.	1	0	1	0	0	5
GAS8	2622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	90099238	90099238	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GAS8-227	NM_001481	exon4	c.A401T	p.Q134L	GCATACAGGAGAG	.	383	93	190	0	.	11	11	0	0	0	5
GAS8	2622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	90099240	90099240	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GAS8-227	NM_001481	exon4	c.G403T	p.E135X	ATACAGGAGAGTG	.	384	94	184	0	.	11	11	0	0	0	5
CLUH	23277	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	2601707	2601707	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_015229	exon10	c.G1330T	p.A444S	AGGCCGCCACGTC	.	275	137	175	1	.	4	0	4	0	0	3
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7577580	7577580	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TP53-70225	NM_000546	exon7	c.A701G	p.Y234C	TAGTTGTAGTGGA	.	203	94	204	2	.	6	0	6	0	0	4
RCVRN	5957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	9801437	9801437	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RCVRN-90	NM_002903	exon3	c.T578A	p.V193E	TCCTTCACTTTTT	.	115	64	114	0	.	0	0	0	0	0	5
KCNJ18	100134444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	21319469	21319469	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001194958	exon3	c.A815T	p.H272L	TCTTGCATGAGAT	.	390	89	383	0	.	0	0	0	0	0	4
TAOK1	57551	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27807461	27807461	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAOK1-521	NM_025142	exon7	c.G525T	p.M175I	TTCCATGGCATCA	.	66	37	103	1	.	1	0	1	0	0	4
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29560226	29560226	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NF1-3353	NM_000267	exon27	c.C3703T	p.Q1235X	TGTTCTCAGTGGG	.	100	66	93	0	.	0	0	0	0	0	5
PSMC5	5705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	61905533	61905533	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PSMC5-178	NM_002805	exon2	c.C60A	p.L20L	CGGACTCCGCCAA	.	125	97	81	0	.	136	5	131	0	0	4
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	31158619	31158619	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASXL3-49	NM_030632	exon1	c.G24T	p.K8N	GAAGAAGGACCGC	.	105	61	43	0	.	0	0	0	0	0	4
SETBP1	26040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	42531994	42531994	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SETBP1-155	NM_015559	exon4	c.T2689A	p.C897S	GATTTCTGCTCCC	.	47	26	72	0	.	0	0	0	0	0	5
SETBP1	26040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	42532100	42532100	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SETBP1-155	NM_015559	exon4	c.G2795T	p.S932I	ACGAAAGCCTCAA	.	18	10	64	0	.	0	0	0	0	0	5
STK11	6794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1220640	1220640	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STK11-5227	NM_000455	exon5	c.C658T	p.Q220X	GCTTTCCAGCCGC	.	73	48	28	0	.	14	8	6	0	0	5
S1PR4	8698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3179663	3179663	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	S1PR4-591	NM_003775	exon1	c.G873T	p.W291C	GGACTGGATCCTG	.	121	68	103	0	.	3	3	0	0	0	5
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9059570	9059570	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUC16-566	NM_024690	exon3	c.G27876C	p.E9292D	GCTGGTCTCCATC	.	78	39	120	1	.	0	0	0	0	0	4
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	9060440	9060440	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUC16-566	NM_024690	exon3	c.27006delC	p.P9002fs	TGGTGTGGGGGTC	.	135	73	169	0	.	0	0	0	0	0	3
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9071377	9071377	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUC16-566	NM_024690	exon3	c.A16069T	p.S5357C	GGATGCTCTGTGG	.	158	101	191	0	.	0	0	0	0	0	5
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9080534	9080534	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUC16-566	NM_024690	exon2	c.C9497A	p.T3166N	ATGGTGGTCACTA	.	124	74	123	0	.	0	0	0	0	0	5
EMR3	84658	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	14749012	14749012	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EMR3-528	NM_032571	exon11	c.G1389T	p.M463I	CCACTTCATGAGT	.	220	15	274	0	.	0	0	0	0	0	3
SLC27A1	376497	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	17598000	17598000	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC27A1-226	NM_198580	exon3	c.G580T	p.G194W	GTGAGCGGGCATC	.	48	38	38	0	.	0	0	0	0	0	4
SLC5A5	6528	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	17994715	17994715	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC5A5-93	NM_000453	exon12	c.C1386A	p.G462G	CTTGGGCGCCACG	.	44	27	10	0	.	0	0	0	0	0	3
ZNF536	9745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	30935331	30935331	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF536-144	NM_014717	exon2	c.G862T	p.E288X	CGCGAGGAGCTGG	.	55	26	17	0	.	0	0	0	0	0	4
PDCD5	9141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	33078192	33078192	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDCD5-228	NM_004708	exon6	c.G364C	p.D122H	GATGAAGATGACG	.	317	150	304	1	.	348	183	165	0	0	5
HAUS5	23354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36110596	36110596	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HAUS5-68	NM_015302	exon15	c.G1342A	p.E448K	TGTCTGGAGGAGG	.	235	68	145	0	.	5	2	3	0	0	5
LRFN3	79414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36435463	36435463	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRFN3-90	NM_024509	exon3	c.G1429A	p.E477K	CCGGCGGAGAGCC	.	78	26	18	0	.	5	3	2	0	0	5
ZNF383	163087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37734341	37734341	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF383-92	NM_152604	exon5	c.G1203T	p.K401N	TGGGAAGGCCTTT	.	55	25	74	0	.	8	3	5	0	0	5
ZNF793	390927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38027960	38027960	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF793-68	NM_001013659	exon8	c.C400T	p.Q134X	TCAATCCAGAGCC	.	39	16	73	0	.	0	0	0	0	0	5
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39019290	39019290	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RYR1-100	NM_000540	exon75	c.G10989A	p.L3663L	GATCCTGACTGAA	.	483	153	358	0	.	0	0	0	0	0	5
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39038919	39038919	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RYR1-100	NM_000540	exon89	c.C12141A	p.L4047L	CATGCTCGTGGAA	.	398	153	261	1	.	0	0	0	0	0	4
PRX	57716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40901699	40901699	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRX-92	NM_181882	exon7	c.C2560G	p.L854V	AAGGCAGAGTGAG	.	82	28	69	0	.	0	0	0	0	0	5
GRIK5	2901	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	42507538	42507538	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRIK5-90	NM_002088	exon18	c.C2460T	p.F820F	CGCCACGAAGACA	.	215	13	99	0	.	0	0	0	0	0	3
DHX34	9704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	47878770	47878770	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DHX34-231	NM_014681	exon10	c.G2112T	p.Q704H	CGCGCAGGTAGGG	.	26	10	11	0	.	10	7	3	0	0	3
POLD1	5424	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	50918779	50918779	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POLD1-840	NM_002691	exon21	c.C2649T	p.I883I	GGTCATCACCAAG	.	445	142	157	1	.	44	24	20	0	0	3
FPR1	2357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52249798	52249798	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FPR1-524	NM_001193306	exon3	c.G450T	p.W150C	CATCACCCAGGGC	.	242	93	197	0	.	10	8	2	0	0	5
VN1R2	317701	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53762456	53762456	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VN1R2-90	NM_173856	exon1	c.C828T	p.L276L	GGGGCTCATGCTC	.	181	63	138	2	.	0	0	0	0	0	3
LILRB5	10990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54756391	54756391	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LILRB5-92	NM_001081442	exon10	c.G1496T	p.G499V	GCAGCCCCTGCAG	.	55	32	39	0	.	19	19	0	0	0	5
RFPL4A	342931	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	56274485	56274485	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RFPL4A-68	NM_001145014	exon3	c.T808C	p.C270R	AGTATCTGTTCTG	.	282	36	223	0	.	0	0	0	0	0	4
NLRP5	126206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56511131	56511131	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRP5-162	NM_153447	exon1	c.C40G	p.L14V	GCTGCTCTGCTCT	.	104	41	77	0	.	0	0	0	0	0	5
ZNF548	147694	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	57911240	57911240	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF548-67	NM_001172773	exon4	c.G1621T	p.E541X	ACAATGGAGAAAG	.	28	14	27	0	.	8	5	3	0	0	3
PXDN	7837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1652055	1652055	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PXDN-166	NM_012293	exon17	c.G3497T	p.G1166V	GGGATCCCGTGGT	.	192	91	104	0	.	1	0	1	0	0	5
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21231248	21231248	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	APOB-175	NM_000384	exon26	c.C8492A	p.S2831Y	TTGCTGGAGAACT	.	66	29	46	0	.	0	0	0	0	0	5
FAM98A	25940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	33811716	33811716	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM98A-91	NM_015475	exon6	c.A633T	p.I211I	ATTGGCTATGGCT	.	44	17	40	0	.	5	4	1	0	0	5
MSH2	4436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	47641427	47641427	+	Missense_Mutation	SNP	C	C	T	rs139891783	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MSH2-2445	NM_000251	exon5	c.C812T	p.S271F	CACTGTCTGCGGT	.	45	22	83	0	.	12	4	8	0	0	5
UGP2	7360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	64111157	64111157	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UGP2-90	NM_006759	exon5	c.G505A	p.E169K	ACGGATGAAGATA	.	47	18	78	0	.	34	19	15	0	0	5
CLEC4F	165530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71039579	71039579	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLEC4F-95	NM_173535	exon5	c.G1539T	p.Q513H	TCTGACCTGCTCC	.	162	55	135	0	.	0	0	0	0	0	5
TBC1D8	11138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	101656658	101656658	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBC1D8-25	NM_001102426	exon6	c.C1017T	p.I339I	CAGGATGATCTTA	.	220	68	132	0	.	2	0	2	0	0	5
IL18R1	8809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	102998142	102998142	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IL18R1-93	NM_003855	exon5	c.G688A	p.G230R	GAATTAGGTATAT	.	77	28	94	0	.	0	0	0	0	0	5
SULT1C3	442038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	108872131	108872131	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SULT1C3-91	NM_001008743	exon4	c.A503T	p.Y168F	AATTTTATGAGAA	.	99	18	79	0	.	0	0	0	0	0	5
CNTNAP5	129684	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	125262066	125262066	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTNAP5-524	NM_130773	exon8	c.C1257A	p.S419R	GCTGAGCCTGGAG	.	172	71	127	1	.	0	0	0	0	0	3
CNTNAP5	129684	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	125547619	125547619	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTNAP5-524	NM_130773	exon18	c.G2890T	p.G964C	AGCTACGGCAGCA	.	304	100	204	1	.	0	0	0	0	0	4
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	125660460	125660460	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTNAP5-524	NM_130773	exon22	c.G3435A	p.E1145E	TGCAGAGAATCTT	.	85	32	71	0	.	0	0	0	0	0	5
POTEF	728378	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	130877801	130877801	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POTEF-27	NM_001099771	exon3	c.C288A	p.N96K	CATCTTGTTCCTG	.	536	67	343	1	.	0	0	0	0	0	3
IMP4	92856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	131103419	131103419	+	Missense_Mutation	SNP	G	G	T	rs200939050	unknown;alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IMP4-90	NM_033416	exon6	c.G507T	p.M169I	GGTCATGCGGCAT	.	134	55	79	0	.	89	50	39	0	0	5
RAB3GAP1	22930	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	135922249	135922249	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAB3GAP1-92	NM_001172435	exon23	c.2692delT	p.F898fs	AAGCTGTTTGTGA	.	135	17	84	0	.	0	0	0	0	0	3
ZEB2	9839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	145153988	145153988	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZEB2-297	NM_014795	exon9	c.G3058T	p.E1020X	TGTGTTCGTATTT	.	315	88	199	0	.	0	0	0	0	0	5
ACVR1	90	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	158626945	158626945	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACVR1-980	NM_001105	exon7	c.A725T	p.E242V	GACTTCTCATCAC	.	161	53	99	0	.	4	3	1	0	0	5
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166152582	166152582	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCN2A-142	NM_001040143	exon1	c.C249A	p.P83P	GGACCCCTACTAT	.	157	62	146	0	.	0	0	0	0	0	5
ITGA4	3676	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	182374441	182374441	+	Silent	SNP	T	T	A	rs201546110	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITGA4-230	NM_000885	exon16	c.T1752A	p.G584G	CCTTGGTCCTCAT	.	81	14	76	1	.	3	2	1	0	0	3
PDE1A	5136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	183088596	183088596	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDE1A-93	NM_001258312	exon8	c.G831A	p.Q277Q	CCTTGTCTGAATG	.	118	34	126	0	.	0	0	0	0	0	5
PDE1A	5136	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	183088641	183088641	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDE1A-93	NM_001258312	exon8	c.T786G	p.I262M	ATCATGAATGGCA	.	190	59	172	1	.	0	0	0	0	0	4
SF3B1	23451	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198257760	198257760	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SF3B1-140	NM_012433	exon24	c.T3692C	p.M1231T	GCTCCCATAACTG	.	279	96	261	1	.	362	199	163	0	0	4
NBEAL1	65065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	203972654	203972654	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NBEAL1-92	NM_001114132	exon13	c.G1605A	p.L535L	ATTGCTGAGAGTG	.	109	34	77	0	.	0	0	0	0	0	5
NBEAL1	65065	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	204075696	204075696	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NBEAL1-92	NM_001114132	exon53	c.C7714T	p.H2572Y	GCATTACATCTGT	.	70	13	113	1	.	1	1	0	0	0	3
CRYGA	1418	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	209028275	209028275	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRYGA-90	NM_014617	exon1	c.G6T	p.G2G	CACCTTCCCCATG	.	317	129	203	1	.	0	0	0	0	0	4
CPS1	1373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	211456582	211456582	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CPS1-162	NM_001122633	exon11	c.C993T	p.I331I	GAATATCACAAAC	.	56	21	31	0	.	0	0	0	0	0	5
PECR	55825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	216930060	216930060	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PECR-90	NM_018441	exon3	c.G399T	p.T133T	GGTACCCGTCAGG	.	160	51	110	0	.	27	13	14	0	0	5
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220332029	220332029	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPEG-383	NM_005876	exon10	c.C3015T	p.G1005G	CCGTGGCCGCCTG	.	105	34	47	0	.	0	0	0	0	0	5
CUL3	8452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	225379488	225379488	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CUL3-229	NM_001257198	exon4	c.A398T	p.D133V	ACACGGTCCTACA	.	128	48	107	0	.	0	0	0	0	0	5
NYAP2	57624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	226447396	226447396	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_020864	exon4	c.C1263G	p.Y421X	GCTGTACCGAACC	.	210	65	97	0	.	0	0	0	0	0	5
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228883966	228883966	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPHKAP-167	NM_030623	exon7	c.C1604A	p.A535E	TGCAGTGCACCAC	.	60	17	41	0	.	0	0	0	0	0	5
TRPM8	79054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234878408	234878408	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPM8-94	NM_024080	exon16	c.C2095G	p.L699V	CTGTGTCTGTTTA	.	257	106	230	0	.	0	0	0	0	0	5
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9360778	9360778	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLCB4-274	NM_182797	exon11	c.G822T	p.M274I	TGAGATGTATGAA	.	223	67	251	0	.	0	0	0	0	0	5
CEP250	11190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34063418	34063418	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CEP250-27	NM_007186	exon15	c.G1663T	p.E555X	CACCTGGAAGGGG	.	146	58	101	0	.	0	0	0	0	0	5
ACTR5	79913	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	37383613	37383613	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACTR5-90	NM_024855	exon4	c.G789T	p.W263C	CAAATGGCGGTGT	.	193	60	213	1	.	5	1	4	0	0	4
SEMG2	6407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43850726	43850726	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEMG2-91	NM_003008	exon2	c.T453A	p.S151S	CCCATCTGGAAAG	.	264	104	238	0	.	0	0	0	0	0	5
ARFGEF2	10564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47630130	47630130	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARFGEF2-358	NM_006420	exon29	c.G3948A	p.M1316I	TGACATGAATGTA	.	151	50	89	0	.	1	1	0	0	0	5
KCNB1	3745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47990374	47990374	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNB1-92	NM_004975	exon2	c.C1723G	p.R575G	CTGTGCGAGTGGG	.	117	34	96	0	.	0	0	0	0	0	5
TSHZ2	128553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	51872153	51872153	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TSHZ2-232	NM_173485	exon2	c.C2156A	p.S719Y	CCTGCTCCAGCCC	.	163	55	72	0	.	0	0	0	0	0	5
MC3R	4159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	54824215	54824215	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MC3R-660	NM_019888	exon1	c.C316A	p.L106M	GACTACCTGACCT	.	492	178	281	0	.	0	0	0	0	0	5
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57430199	57430199	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GNAS-4767	NM_080425	exon1	c.C1879T	p.Q627X	AGTCCCCAGCCCA	.	112	34	108	0	.	0	0	0	0	0	5
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57768876	57768876	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF831-126	NM_178457	exon1	c.T2802A	p.D934E	GGCAGATAATGCC	.	60	20	49	0	.	0	0	0	0	0	5
GRIK1	2897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	30959761	30959761	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRIK1-137	NM_000830	exon12	c.C1718A	p.P573H	GACAGGGGGTTGA	.	221	72	159	0	.	0	0	0	0	0	5
KRTAP24-1	643803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	31654682	31654682	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRTAP24-1-68	NM_001085455	exon1	c.C569A	p.P190Q	CATAATGGTGAGA	.	143	60	132	0	.	0	0	0	0	0	5
ERG	2078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	39817408	39817408	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ERG-848	NM_004449	exon4	c.C176G	p.P59R	TGCTGAGGGACGC	.	342	120	238	0	.	2	2	0	0	0	5
KRTAP10-8	386681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46032129	46032129	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRTAP10-8-153	NM_198695	exon1	c.G112A	p.G38S	TGCACTGGCTCCT	.	140	48	57	0	.	0	0	0	0	0	5
TBX1	6899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19752531	19752531	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBX1-154	NM_080647	exon6	c.T735C	p.Y245Y	GGTCTATGTGGAC	.	147	97	170	0	.	1	0	1	0	0	5
SGSM1	129049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	25240890	25240890	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SGSM1-27	NM_001098497	exon3	c.G90A	p.V30V	GGCTGTGACACGC	.	145	102	103	0	.	0	0	0	0	0	5
MICALL1	85377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38323452	38323452	+	Silent	SNP	G	G	A	rs201808090	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MICALL1-153	NM_033386	exon9	c.G1500A	p.P500P	GGAGCCGCCCTCG	.	44	29	18	0	.	5	0	5	0	0	4
ANKRD28	23243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	15778712	15778712	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD28-135	NM_015199	exon5	c.C290G	p.S97C	TCTGCAGAATGCT	.	46	24	68	0	.	3	0	3	0	0	5
HHATL	57467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42739085	42739085	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HHATL-93	NM_020707	exon7	c.C780A	p.A260A	GTCGACGGCCATG	.	230	122	214	0	.	0	0	0	0	0	5
BSN	8927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49692898	49692898	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BSN-97	NM_003458	exon5	c.G5909T	p.R1970M	AGCAGAGGCCCTA	.	18	10	30	0	.	0	0	0	0	0	5
RBM15B	29890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	51430916	51430916	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBM15B-90	NM_013286	exon1	c.A2086T	p.K696X	GAGCCCAAGCCTC	.	206	123	222	0	.	46	5	41	0	0	5
DNAH1	25981	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52430932	52430932	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH1-67	NM_015512	exon73	c.G11659T	p.D3887Y	GTCACTGATGACT	.	114	68	150	1	.	2	1	1	0	0	3
ARHGEF3	50650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	56992915	56992915	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGEF3-228	NM_001128615	exon3	c.C65G	p.P22R	CGTTTAGGCCTAG	.	130	78	125	0	.	0	0	0	0	0	5
PSMD6	9861	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	64008128	64008128	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PSMD6-91	NM_001271779	exon3	c.A376T	p.M126L	TCTTCATTTTATT	.	149	81	171	2	.	30	8	22	0	0	3
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	77666782	77666782	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ROBO2-328	NM_002942	exon22	c.G3412T	p.A1138S	GGCGTGGCTTCTT	.	164	93	148	0	.	0	0	0	0	0	5
P2RY14	9934	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	150931660	150931660	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	P2RY14-563	NM_014879	exon3	c.A445G	p.M149V	GGAGCATGAGCAT	.	168	13	88	0	.	0	0	0	0	0	3
FAM200B	285550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	15689683	15689683	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145191	exon2	c.G1083A	p.L361L	CTCATTGAATAGC	.	47	23	105	0	.	0	0	0	0	0	5
KCNIP4	80333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	20884247	20884247	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNIP4-91	NM_025221	exon1	c.G87T	p.S29S	AGGAGACGACGTT	.	34	18	50	0	.	0	0	0	0	0	5
GABRA2	2555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	46252425	46252425	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GABRA2-94	NM_000807	exon10	c.G1256C	p.R419T	GACATTCTGTCAA	.	58	31	80	0	.	0	0	0	0	0	5
CORIN	10699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	47765548	47765548	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CORIN-91	NM_006587	exon4	c.G465C	p.T155T	TGTCAGCGTGGCG	.	156	85	142	0	.	0	0	0	0	0	5
TMPRSS11B	132724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	69094576	69094576	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMPRSS11B-91	NM_182502	exon9	c.G973T	p.D325Y	AAAAGTCTTCTTG	.	140	76	149	0	.	0	0	0	0	0	5
UGT2A3	79799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	69817028	69817028	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UGT2A3-92	NM_024743	exon1	c.G451T	p.V151L	GAATCACAGGGTC	.	146	72	234	0	.	0	0	0	0	0	5
CCSER1	401145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	91389426	91389426	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145065	exon5	c.G1645T	p.A549S	TGTGCCGCAGTAG	.	100	60	153	0	.	0	0	0	0	0	5
PDHA2	5161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	96762414	96762414	+	Silent	SNP	A	A	G	rs150761581	byfrequency;alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDHA2-90	NM_005390	exon1	c.A1113G	p.S371S	TGATTCATCTTTT	.	184	125	172	0	A|0.998;C|0.002	0	0	0	0	0	5
SEC24B	10427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	110448529	110448529	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEC24B-137	NM_006323	exon18	c.T3017C	p.L1006P	GTTCACTAGCAGA	.	69	41	98	0	.	11	0	11	0	0	5
PITX2	5308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	111542464	111542464	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PITX2-650	NM_000325	exon2	c.G267C	p.K89N	CCGCTTCTTCTTA	.	50	23	62	0	.	1	0	1	0	0	5
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	114163347	114163347	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANK2-583	NM_001148	exon9	c.G873T	p.Q291H	CGGTCAGATCGAT	.	142	73	166	0	.	0	0	0	0	0	4
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123268929	123268929	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1109-80	NM_015312	exon74	c.G13124A	p.R4375Q	TTCCTCGAAGAGG	.	165	103	119	0	.	0	0	0	0	0	5
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	126238731	126238731	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAT4-108	NM_024582	exon1	c.G1165T	p.A389S	TCTCCCGCGGCCA	.	275	157	223	0	.	0	0	0	0	0	5
FSTL5	56884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	162954783	162954783	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FSTL5-158	NM_020116	exon3	c.G154T	p.V52F	CTTTGACTCTTGA	.	16	9	44	0	.	0	0	0	0	0	5
ACSL1	2180	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	185687098	185687098	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACSL1-92	NM_001995	exon14	c.G1306T	p.A436S	CCGGGGCGGCTCC	.	155	89	158	1	.	0	0	0	0	0	3
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	7802377	7802377	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADCY2-97	NM_020546	exon21	c.C2675T	p.S892F	TTGCCTCCATTCC	.	126	42	97	0	.	0	0	0	0	0	5
C5orf49	134121	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	7832052	7832052	+	Missense_Mutation	SNP	G	G	A	rs202097565	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C5orf49-22	NM_001089584	exon3	c.C355T	p.R119C	TGGCACGGCCAAA	.	157	51	98	1	.	0	0	0	0	0	4
PRDM9	56979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	23527817	23527817	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRDM9-139	NM_020227	exon11	c.A2620T	p.S874C	AGGTCAAGCCTCT	.	284	115	194	0	.	0	0	0	0	0	5
OSMR	9180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38869147	38869147	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OSMR-496	NM_001168355	exon2	c.A1G	p.M1V	GAACTGATGGCTC	.	98	25	104	0	.	0	0	0	0	0	5
FYB	2533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	39118988	39118988	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FYB-24	NM_001243093	exon16	c.G2419A	p.E807K	CTTCTTCATTTCT	.	88	15	80	0	.	0	0	0	0	0	5
ENC1	8507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	73930600	73930600	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ENC1-228	NM_003633	exon2	c.G1711T	p.V571F	ACGGGACAGTGGT	.	413	134	312	0	.	7	6	1	0	0	5
COL4A3BP	10087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74681788	74681788	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL4A3BP-226	NM_001130105	exon14	c.C1740A	p.G580G	TGTGACGCCTTTA	.	73	24	60	0	.	0	0	0	0	0	5
FAM81B	153643	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	94764306	94764306	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM81B-92	NM_152548	exon6	c.657-1G>C	.	CCATTAGATGTGA	.	199	85	161	2	.	0	0	0	0	0	3
SLCO4C1	353189	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	101576467	101576467	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLCO4C1-93	NM_180991	exon11	c.C1831T	p.R611W	GGGACCGTTGTCT	.	179	66	206	1	.	0	0	0	0	0	4
PCDHB13	56123	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140595249	140595249	+	Silent	SNP	T	T	G	rs144959109	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB13-93	NM_018933	exon1	c.T1554G	p.S518S	CAGGTCTCTGGAC	.	548	214	172	2	T|0.999;G|0.001	2	0	2	0	0	4
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140723866	140723866	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHGA3-68	NM_032011	exon1	c.G266T	p.R89M	CGGAGAGGATAGA	.	116	42	122	0	.	0	0	0	0	0	5
GLRA1	2741	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	151231112	151231112	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GLRA1-91	NM_000171	exon7	c.751delT	p.Y251fs	TCAGGTAGTAACC	.	313	130	224	0	.	0	0	0	0	0	3
HAVCR1	26762	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	156482398	156482398	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HAVCR1-92	NM_001099414	exon3	c.A193G	p.N65D	TTCCATTGGTCCA	.	235	95	171	1	.	0	0	0	0	0	3
CDHR2	54825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176016115	176016115	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDHR2-70	NM_017675	exon22	c.C2940A	p.T980T	GGCCACCATCCCT	.	191	62	163	0	.	2	0	2	0	0	5
HK3	3101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176314086	176314086	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HK3-294	NM_002115	exon13	c.C1774A	p.Q592K	TCTGCTGGAAGTC	.	266	98	144	0	.	2	2	0	0	0	5
GRM6	2916	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	178413936	178413936	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRM6-588	NM_000843	exon7	c.G1403T	p.G468V	TACCGCCCGGGCG	.	168	67	90	1	.	0	0	0	0	0	3
ALDH5A1	7915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	24523089	24523089	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALDH5A1-90	NM_170740	exon8	c.T1148C	p.V383A	TGCGCGTAGGTAA	.	111	35	99	0	.	6	3	3	0	0	5
HIST1H3A	8350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26020915	26020915	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIST1H3A-92	NM_003529	exon1	c.A198G	p.L66L	TAAACTACCTTTC	.	148	56	75	0	.	0	0	0	0	0	5
HIST1H3F	8968	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	26250440	26250440	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIST1H3F-68	NM_021018	exon1	c.C394G	p.R132G	CTCCGCGAATGCG	.	216	82	152	1	.	0	0	0	0	0	3
HIST1H2BN	8341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27806779	27806779	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIST1H2BN-68	NM_003520	exon1	c.G340A	p.E114K	GTGTCGGAGGGCA	.	211	74	84	0	.	5	0	5	0	0	5
ZKSCAN3	80317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28331530	28331530	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZKSCAN3-92	NM_024493	exon5	c.C695T	p.S232L	AGGATTCATCTCA	.	190	63	149	0	.	1	0	1	0	0	5
HLA-F	3134	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	29692009	29692009	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HLA-F-22	NM_001098478	exon3	c.C394T	p.R132C	CTCCTCCGCGGGT	.	237	81	130	0	.	420	285	135	0	0	4
PRRC2A	7916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31590581	31590581	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRRC2A-156	NM_004638	exon2	c.G15T	p.S5S	TCGCTCGGGGCCG	.	132	48	84	0	.	2	1	1	0	0	5
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32017977	32017977	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNXB-90	NM_019105	exon27	c.C9231T	p.S3077S	CATCCAGGACAGG	.	309	103	219	0	.	0	0	0	0	0	5
HLA-DQA1	3117	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	32610520	32610520	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HLA-DQA1-90	NM_002122	exon4	c.C747A	p.S249S	TGCTTCCAGACAC	.	341	140	179	1	.	57	57	0	0	0	3
GUCA1B	2979	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42156332	42156332	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GUCA1B-92	NM_002098	exon2	c.C345G	p.L115L	AATGTTGAGTAGC	.	117	43	79	1	.	0	0	0	0	0	4
SLC25A27	9481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46623682	46623682	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC25A27-90	NM_001204051	exon2	c.G209A	p.G70E	ATAGGGGAATGGT	.	156	72	100	0	.	0	0	0	0	0	5
CRISP1	167	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49806196	49806196	+	Silent	SNP	G	G	A	rs35289289	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRISP1-90	NM_001205220	exon7	c.C576T	p.G192G	TGGGACGCCTGTC	.	58	24	43	0	G|0.960;A|0.040	0	0	0	0	0	4
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51920477	51920477	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKHD1-603	NM_170724	exon19	c.T1744C	p.F582L	CACAGAAGGGCTC	.	139	49	63	0	.	0	0	0	0	0	5
IL17A	3605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	52052591	52052591	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IL17A-90	NM_002190	exon2	c.C218T	p.P73L	CCTCACCTTGGAA	.	161	44	102	0	.	0	0	0	0	0	5
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56336950	56336950	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DST-523	NM_015548	exon75	c.G14196T	p.R4732S	GTTTACCCTAGGA	.	235	84	138	0	.	32	11	21	0	0	5
KPNA5	3841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	117013269	117013269	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KPNA5-290	NM_002269	exon3	c.G190C	p.E64Q	ATGCTTGAAAGTC	.	76	42	148	0	.	2	0	2	0	0	5
CCDC170	80129	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	151936589	151936589	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_025059	exon10	c.G1722T	p.L574F	AACTTTGGAACAG	.	47	18	82	1	.	0	0	0	0	0	4
SYNE1	23345	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	152763327	152763327	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SYNE1-607	NM_033071	exon31	c.G3912T	p.A1304A	CGCCTGCGCGATC	.	57	39	43	1	.	0	0	0	0	0	3
PMS2	5395	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	6022454	6022454	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PMS2-1083	NM_000535	exon13	c.2174+1G>A	.	CACTCACGCTATG	.	624	157	506	1	.	1	0	1	0	0	3
GRID2IP	392862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	6565891	6565891	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145118	exon4	c.G883A	p.G295S	CGTGGCCGCGAAG	.	87	30	70	0	.	0	0	0	0	0	5
ETV1	2115	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	13971174	13971174	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ETV1-659	NM_004956	exon9	c.755delC	p.P252fs	AGAGGAGGGGGAA	.	176	58	149	0	.	0	0	0	0	0	3
ETV1	2115	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	7	13971177	13971177	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ETV1-659	NM_004956	exon9	c.C752T	p.P251L	GGAGGGGGAAAGC	.	178	59	149	0	.	0	0	0	0	0	3
FERD3L	222894	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	19184760	19184760	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FERD3L-153	NM_152898	exon1	c.G226T	p.E76X	CCTCCTCTTCTCC	.	65	22	73	0	.	0	0	0	0	0	4
CDK13	8621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	40085455	40085455	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDK13-548	NM_003718	exon6	c.G2374A	p.E792K	GTGTTTGAATATA	.	53	21	47	0	.	9	5	4	0	0	5
SUN3	256979	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	48068434	48068434	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SUN3-514	NM_152782	exon2	c.C102T	p.D34D	ATTTTCGTCCTCT	.	218	18	176	0	.	0	0	0	0	0	3
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48314045	48314045	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCA13-521	NM_152701	exon17	c.C4782G	p.G1594G	TGTAGGCAATTCC	.	69	28	91	0	.	0	0	0	0	0	5
IKZF1	10320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	50444361	50444361	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IKZF1-1242	NM_006060	exon4	c.G291T	p.R97S	CCACAGGGACCAA	.	197	80	143	0	.	0	0	0	0	0	5
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82784132	82784132	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCLO-29	NM_014510	exon2	c.A1825T	p.T609S	TGCATGTGTTAAA	.	272	90	180	0	.	0	0	0	0	0	5
SEMA3D	223117	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	84685101	84685101	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEMA3D-138	NM_152754	exon7	c.C793A	p.R265S	ATTCACGAAAGAA	.	26	12	45	0	.	0	0	0	0	0	4
ABCB1	5243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	87178755	87178755	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCB1-582	NM_000927	exon15	c.T1634A	p.L545Q	CGAACCAGGGCAC	.	191	51	123	0	.	0	0	0	0	0	5
RUNDC3B	154661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	87400049	87400049	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RUNDC3B-69	NM_138290	exon8	c.T833A	p.L278H	ATCAGCTTACCCT	.	155	68	123	0	.	0	0	0	0	0	5
STEAP2	261729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	89854425	89854425	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STEAP2-92	NM_001040665	exon3	c.C29T	p.P10L	GAAGCCCTAAGAG	.	172	54	121	0	.	2	2	0	0	0	5
FOXP2	93986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	114268677	114268677	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FOXP2-295	NM_001172767	exon4	c.C416A	p.S139Y	TCCTGTCTCCTCA	.	140	39	98	0	.	0	0	0	0	0	5
CFTR	1080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	117232327	117232327	+	Silent	SNP	C	C	G	rs1800102	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CFTR-518	NM_000492	exon14	c.C2106G	p.L702L	TATTCTCAATCCA	.	16	6	30	0	.	0	0	0	0	0	4
FEZF1	389549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	121942939	121942939	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FEZF1-91	NM_001024613	exon3	c.G983T	p.S328I	GTGGAACTTCTAT	.	89	30	105	0	.	0	0	0	0	0	5
SLC13A1	6561	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	122759235	122759235	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC13A1-92	NM_022444	exon13	c.G1412T	p.W471L	ATTAGCCATGCTG	.	74	28	71	1	.	0	0	0	0	0	4
POT1	25913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	124503540	124503540	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POT1-227	NM_015450	exon8	c.G410T	p.R137L	CAAACACGTAAGG	.	267	96	191	0	.	1	0	1	0	0	5
BRAF	673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	140453154	140453154	+	Missense_Mutation	SNP	T	T	C	rs121913338	bycluster	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BRAF-92146	NM_004333	exon15	c.A1781G	p.D594G	CCAAAATCACCTA	.	77	25	54	0	.	1	0	1	0	0	4
CLEC5A	23601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141635690	141635690	+	Missense_Mutation	SNP	G	G	A	rs117965702	unknown;alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLEC5A-90	NM_013252	exon5	c.C269T	p.S90L	CAAGATGATTCAG	.	76	27	60	0	G|0.998;T|0.002	0	0	0	0	0	5
OR6V1	346517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142750104	142750104	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR6V1-23	NM_001001667	exon1	c.G667C	p.V223L	ACCACTGTGCTGC	.	264	102	208	0	.	0	0	0	0	0	5
UNC5D	137970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	35579843	35579843	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UNC5D-96	NM_080872	exon9	c.C1233G	p.G411G	CTATGGCGTGGAC	.	207	120	166	0	.	0	0	0	0	0	5
PXDNL	137902	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	52321329	52321329	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PXDNL-70	NM_144651	exon17	c.C2855A	p.P952H	AAACAGGGGCTCT	.	144	82	111	1	.	0	0	0	0	0	3
ST18	9705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	53071652	53071652	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ST18-95	NM_014682	exon15	c.C1612G	p.P538A	TCACTGGATTTGG	.	34	17	24	0	.	0	0	0	0	0	5
HEY1	23462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	80677603	80677603	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HEY1-658	NM_001040708	exon5	c.C747T	p.T249T	GGCGGAGGTGACC	.	283	30	115	0	.	3	3	0	0	0	4
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	114449052	114449052	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSMD3-1132	NM_052900	exon1	c.C32A	p.A11E	TCCTTTGCTCGGC	.	44	32	43	0	.	0	0	0	0	0	5
LRRC24	441381	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	145747994	145747994	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC24-90	NM_001024678	exon5	c.G1407A	p.E469E	GAACATCTCGTGG	.	301	57	66	0	.	16	13	3	0	0	4
SLC1A1	6505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	4573909	4573909	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC1A1-514	NM_004170	exon8	c.A770T	p.Y257F	CCAGTTATATGCC	.	137	21	104	0	.	0	0	0	0	0	4
CNTLN	54875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	17462995	17462995	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTLN-91	NM_017738	exon20	c.A3388T	p.K1130X	CACATAAAGGAAA	.	335	104	283	0	.	4	4	0	0	0	5
DENND4C	55667	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	19300261	19300261	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DENND4C-92	NM_017925	exon9	c.G1243T	p.E415X	TTACTTGAGAGTA	.	80	31	70	0	.	0	0	0	0	0	4
ELAVL2	1993	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	23701604	23701604	+	Splice_Site	SNP	T	T	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ELAVL2-516	NM_004432	exon6	c.488-2A>T	.	TATGCCTATGGTA	.	99	41	103	1	.	0	0	0	0	0	3
UNC13B	10497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35366986	35366986	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UNC13B-157	NM_006377	exon11	c.G1210A	p.E404K	CTCCCGGAAGGGT	.	80	18	60	0	.	0	0	0	0	0	5
TPM2	7169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35684309	35684309	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TPM2-515	NM_213674	exon8	c.G706A	p.E236K	GGGTCTCAGCCTG	.	116	35	98	0	.	0	0	0	0	0	5
FRMPD1	22844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	37733737	37733737	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FRMPD1-159	NM_014907	exon12	c.C1133T	p.S378F	TTATTTCTGCTGC	.	27	11	34	0	.	0	0	0	0	0	5
SPATA31A6	389730	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	43627291	43627291	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145196	exon4	c.C1396T	p.L466F	GGAAAAGCAGTGG	.	27	19	14	0	.	0	0	0	0	0	4
APBA1	320	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	9	72132096	72132096	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	APBA1-91	NM_001163	exon2	c.G31C	p.E11Q	TCACCTCCACCTC	.	41	16	10	0	.	0	0	0	0	0	3
MURC	347273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	103348271	103348271	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MURC-69	NM_001018116	exon2	c.G633A	p.R211R	GACACGGCAGAAT	.	128	26	94	0	.	0	0	0	0	0	5
OR13C3	138803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107298061	107298061	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR13C3-69	NM_001001961	exon1	c.C1034A	p.P345Q	TGAATTGGTTTTT	.	103	29	83	0	.	0	0	0	0	0	5
OR13D1	286365	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	107457687	107457687	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR13D1-70	NM_001004484	exon1	c.G985T	p.V329F	AAAGAGGTCAAAG	.	71	20	43	0	.	0	0	0	0	0	4
IKBKAP	8518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	111679945	111679945	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IKBKAP-318	NM_003640	exon9	c.C746T	p.S249L	CTGCCTGAGGGTC	.	92	46	88	0	.	0	0	0	0	0	5
KIAA1958	158405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	115336645	115336645	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1958-91	NM_133465	exon2	c.G285A	p.Q95Q	GACACAGACTAGC	.	176	67	141	0	.	0	0	0	0	0	5
TLR4	7099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	120475158	120475158	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TLR4-577	NM_138554	exon3	c.C752A	p.A251D	GTCTGGCTGGTTT	.	28	13	35	0	.	0	0	0	0	0	5
LHX6	26468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	124979518	124979518	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LHX6-90	NM_014368	exon5	c.G511T	p.D171Y	CCCAGTCGCTGGC	.	163	19	51	0	.	0	0	0	0	0	4
OR1J4	26219	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	125281773	125281773	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR1J4-90	NM_001004452	exon1	c.G354T	p.M118I	TTCAATGGCATAC	.	161	63	125	1	.	0	0	0	0	0	3
RC3H2	54542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125645584	125645584	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RC3H2-523	NM_018835	exon5	c.G658T	p.V220L	AAAGTACCAGAAC	.	138	49	132	0	.	2	0	2	0	0	5
DENND1A	57706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	126439003	126439003	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DENND1A-92	NM_024820	exon6	c.G368C	p.R123T	ACCTGTCTTTTTG	.	36	16	33	0	.	0	0	0	0	0	5
PTGDS	5730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139874677	139874677	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTGDS-91	NM_000954	exon5	c.C491A	p.T164N	AATTCACCGCCTT	.	157	48	122	0	.	2	2	0	0	0	5
NELFB	25920	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	140150001	140150001	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_015456	exon1	c.G40A	p.E14K	AACGGCGAGGACC	.	120	47	31	0	.	21	9	12	0	0	4
CACNA1F	778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49083514	49083514	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNA1F-176	NM_001256789	exon9	c.G1194T	p.E398D	GTCTTCCTCCATC	.	67	45	54	0	.	0	0	0	0	0	5
KIAA2022	340533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	73962657	73962657	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA2022-183	NM_001008537	exon3	c.G1735T	p.A579S	GCTTGGCATATTT	.	49	39	54	0	.	0	0	0	0	0	5
CYLC1	1538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	83124906	83124906	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CYLC1-112	NM_021118	exon2	c.C51T	p.S17S	TAATTCCATTCCA	.	67	37	89	0	.	0	0	0	0	0	5
SEPT6	23157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	118774715	118774715	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEPT6-969	NM_145802	exon6	c.G727C	p.E243Q	TCAGTTCTTCTGT	.	79	61	51	0	.	6	3	3	0	0	5
GPR112	139378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135431107	135431107	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR112-183	NM_153834	exon6	c.G5242A	p.E1748K	GTTCCTGAAAATA	.	28	19	30	0	.	0	0	0	0	0	5
ELAVL2	1993	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	23693475	23693476	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ELAVL2-516	NM_004432	exon6	c.723_724insA	p.N241fs	GAGCAGATTGTCC	.	122	42	107	0	.	0	0	0	0	0	3
ELTD1	64123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	79385979	79385980	+	Missense_Mutation	DNP	CC	CC	AA	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ELTD1-24	NM_022159	exon10	c.G1349T	p.W450F	AAGAACCAGAAGG	.	45	6	45	0	.	0	0	0	0	0	4
LIM2	3982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51890472	51890473	+	Missense_Mutation	DNP	CC	CC	AA	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LIM2-90	NM_030657	exon2	c.G225T	p.D76Y	GAGGTCCGCCCTG	.	79	5	67	0	C|0.999;T|0.001	0	0	0	0	0	4
UBE3B	89910	broad.mit.edu;bcgsc.ca	37	12	109940954	109940954	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBE3B-660	NM_130466	exon14	c.C1409T	p.S470L	AGACCTCGCTGAC	.	125	49	99	2	.	3	0	3	0	0	2
POLD1	5424	mdanderson.org	37	19	50905080	50905080	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POLD1-840	NM_002691	exon4	c.C362T	p.S121F	GCGGCTCCGTGCC	.	88	40	25	1	.	5	1	4	0	0	1
MYO3A	53904	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	26357698	26357698	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO3A-1007	NM_017433	exon12	c.A1055G	p.N352S	TGCAGAATACAGT	.	30	9	24	0	.	0	0	0	0	0	4
LGI1	9211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	95537350	95537350	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LGI1-517	NM_005097	exon4	c.G407T	p.R136L	CTTTCCGGGGACT	.	96	32	65	0	.	0	0	0	0	0	5
CCDC62	84660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123273380	123273380	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC62-157	NM_201435	exon5	c.C574T	p.R192C	GCCCTACGTGATG	.	176	46	131	0	.	0	0	0	0	0	5
OR4N2	390429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20295677	20295677	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4N2-71	NM_001004723	exon1	c.C70G	p.Q24E	GATATTCAGCTCC	.	356	37	239	0	.	0	0	0	0	0	4
OR4N2	390429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20295722	20295722	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4N2-71	NM_001004723	exon1	c.C115G	p.L39V	ATCATCCTCCCTG	.	260	30	210	0	.	0	0	0	0	0	4
OR4N2	390429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20295790	20295790	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4N2-71	NM_001004723	exon1	c.C183G	p.F61L	CTATTTCTTTCTG	.	213	30	191	0	.	0	0	0	0	0	5
OR4N2	390429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20295819	20295819	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4N2-71	NM_001004723	exon1	c.C212G	p.A71G	TGGATGCATCCTA	.	240	26	183	0	.	0	0	0	0	0	4
C14orf93	60686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23456429	23456429	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C14orf93-91	NM_021944	exon7	c.G1612A	p.E538K	TTTATTCATCCTT	.	111	14	83	0	.	2	2	0	0	0	4
ADCY4	196883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24799400	24799400	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADCY4-93	NM_001198592	exon8	c.G1032T	p.M344I	CAGGCCCATGCGC	.	127	22	113	0	.	2	2	0	0	0	5
PRPF39	55015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45564512	45564512	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRPF39-70	NM_017922	exon2	c.G70C	p.V24L	GAGGTAGTGGTAG	.	239	50	226	0	.	0	0	0	0	0	5
PRKCH	5583	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	61917623	61917623	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRKCH-1063	NM_006255	exon6	c.C766G	p.P256A	AAAGTGCCAACAT	.	150	24	139	1	.	0	0	0	0	0	4
WDR16	146845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	9501596	9501596	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDR16-71	NM_145054	exon5	c.C582G	p.I194M	AAAAATCTGGCCA	.	39	16	41	0	.	0	0	0	0	0	5
CIDEA	1149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	12274230	12274230	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CIDEA-91	NM_001279	exon4	c.G469A	p.V157M	TACTCCGTGTCCT	.	83	12	114	0	.	0	0	0	0	0	4
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	50976874	50976874	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DCC-225	NM_005215	exon23	c.G3234A	p.P1078P	AGAGCCGCCAATT	.	65	39	78	0	.	0	0	0	0	0	5
PRKD3	23683	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	37543587	37543587	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRKD3-543	NM_005813	exon1	c.T81A	p.S27S	ACACGGAGAAGCA	.	124	10	126	0	.	0	0	0	0	0	3
PLCB4	5332	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	9353694	9353694	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLCB4-274	NM_182797	exon10	c.C687T	p.I229I	TTTCAGCAATGGA	.	98	13	79	1	.	0	0	0	0	0	3
COL20A1	57642	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	61957493	61957493	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL20A1-90	NM_020882	exon30	c.G3448A	p.G1150S	CCCCCTGGCCCCA	.	116	27	74	1	.	0	0	0	0	0	3
DPPA2	151871	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	109027035	109027035	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DPPA2-93	NM_138815	exon6	c.A502T	p.R168X	CTGCTCTCTCATT	.	151	37	117	1	.	0	0	0	0	0	3
MAATS1	89876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119462961	119462961	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_033364	exon14	c.G1820A	p.R607Q	GCCAGCGGCGGGT	.	134	23	114	0	.	3	3	0	0	0	5
UTRN	7402	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	144878365	144878365	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UTRN-95	NM_007124	exon49	c.G7207C	p.E2403Q	CTCCTGGAGGAAT	.	153	11	120	0	.	0	0	0	0	0	3
FBXO5	26271	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	153296478	153296481	+	Frame_Shift_Del	DEL	TAAG	TAAG	-	novel	unknown	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	TAAG	TAAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXO5-658	NM_012177	exon2	c.379_382del	p.127_128del	TACTATTAAGTGT	.	133	18	114	0	.	0	0	0	0	0	3
OR2AE1	81392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99473846	99473846	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2AE1-90	NM_001005276	exon1	c.A811G	p.K271E	CAACTTTGTTCTG	.	69	8	93	0	.	0	0	0	0	0	4
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	3216707	3216707	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSMD1-86	NM_033225	exon21	c.C3271T	p.R1091C	ACACACGGCGGCC	.	134	23	68	0	.	0	0	0	0	0	5
EGR3	1960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22548147	22548147	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EGR3-90	NM_004430	exon2	c.T1003A	p.C335S	ACTCGCAGGCAAA	.	313	123	90	0	.	0	0	0	0	0	5
KIAA1045	23349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34976195	34976195	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1045-69	NM_015297	exon4	c.C611T	p.T204M	GCCTCACGGAGAC	.	79	22	71	0	.	0	0	0	0	0	5
PDK3	5165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24517001	24517001	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDK3-377	NM_005391	exon3	c.C304T	p.P102S	GAGGATCCACAGG	.	133	46	100	0	.	0	0	0	0	0	5
PA2G4	5036	broad.mit.edu;bcgsc.ca	37	12	56504205	56504205	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PA2G4-68	NM_006191	exon8	c.T652A	p.F218I	GCTGAATTTGAGG	.	251	11	153	0	.	178	175	3	0	0	2
ANKRD17	26057	ucsc.edu;bcgsc.ca	37	4	73956553	73956553	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD17-234	NM_032217	exon29	c.T6792C	p.S2264S	ATGAGCAGAAGTA	.	224	64	152	2	.	17	14	3	0	0	2
RRAGC	64121	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	39321479	39321479	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RRAGC-91	NM_022157	exon3	c.A542T	p.D181V	AGACCATCAACTT	.	95	6	115	0	.	7	7	0	0	0	3
ZCCHC11	23318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	52943488	52943488	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZCCHC11-93	NM_001009881	exon12	c.T1915C	p.F639L	TGTAGAATTTAAG	.	112	18	111	0	.	1	1	0	0	0	4
STOX1	219736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70644430	70644430	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STOX1-92	NM_152709	exon3	c.G878A	p.C293Y	ACATTTGTGAGAG	.	138	63	113	0	.	0	0	0	0	0	5
OR10W1	81341	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	58034971	58034971	+	Silent	SNP	C	C	T	rs200368241	unknown	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR10W1-69	NM_207374	exon1	c.G360A	p.P120P	CTGCAACGGGTGG	.	95	8	100	0	C|0.999;T|0.001	0	0	0	0	0	3
FRY	10129	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	32810275	32810275	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FRY-142	NM_023037	exon43	c.T5776C	p.L1926L	GACTGCTTGAAGA	.	98	7	116	0	.	5	5	0	0	0	3
UGGT2	55757	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	96579505	96579505	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UGGT2-92	NM_020121	exon18	c.G2063T	p.R688L	TTAGTACGCAAAA	.	137	6	225	0	.	0	0	0	0	0	3
ARMC5	79798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	31477224	31477224	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARMC5-24	NM_001105247	exon5	c.1918delG	p.G640fs	GGGGTTGGGGCCC	.	55	24	49	0	.	0	0	0	0	0	3
KIFC3	3801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	57793684	57793684	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIFC3-91	NM_001130100	exon18	c.C2432T	p.T811I	CTACTGGTCCCAG	.	130	7	105	0	.	20	20	0	0	0	3
CSNK2A2	1459	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	58200519	58200519	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSNK2A2-790	NM_001896	exon9	c.C796T	p.L266L	GATCTAGGTCTAT	.	130	58	121	1	.	23	16	7	0	0	3
KCNG4	93107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84271024	84271024	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNG4-93	NM_172347	exon2	c.G68C	p.W23S	TGACTCCAAGGGC	.	86	26	70	0	.	0	0	0	0	0	5
BTBD17	388419	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72356326	72356326	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BTBD17-22	NM_001080466	exon2	c.G144A	p.A48A	GAGCACCGCCTGG	.	228	96	163	1	.	0	0	0	0	0	3
HOXD4	3233	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	177016766	177016766	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HOXD4-91	NM_014621	exon1	c.C405A	p.P135P	CTACCCCTGGATG	.	81	12	135	0	.	0	0	0	0	0	3
MARCH4	57574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	217124357	217124357	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MARCH4-69	NM_020814	exon4	c.G911A	p.R304Q	TGCCACCGTTTAA	.	87	52	87	0	.	0	0	0	0	0	5
MYEOV2	150678	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	241066032	241066032	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYEOV2-68	NM_138336	exon5	c.C707A	p.A236D	CCACCAGCAACGG	.	156	9	195	0	.	0	0	0	0	0	3
ATF4	468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	39918189	39918189	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATF4-90	NM_001675	exon2	c.C638T	p.T213I	AAGACACCCCTTC	.	308	216	419	1	.	312	27	285	0	0	5
KLHDC8B	200942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49211828	49211828	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLHDC8B-90	NM_173546	exon3	c.A533G	p.Y178C	AGATCTATGTCCT	.	102	33	92	0	.	4	1	3	0	0	5
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52554839	52554839	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STAB1-139	NM_015136	exon55	c.G5726T	p.W1909L	CCTGCTGGCGCTT	.	58	12	52	0	.	43	43	0	0	0	4
DNAJC13	23317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132245070	132245070	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAJC13-272	NM_015268	exon53	c.C6326G	p.A2109G	GTCTAGCCTGTGA	.	219	85	131	0	.	45	23	22	0	0	5
EXOC1	55763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	56737029	56737029	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EXOC1-950	NM_018261	exon6	c.C789T	p.N263N	TAGTAACACTAAT	.	191	86	170	0	.	9	8	1	0	0	5
FBXO8	26269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	175158607	175158607	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXO8-290	NM_012180	exon6	c.C916T	p.H306Y	AAAGATGCCCTAC	.	83	26	101	0	.	36	18	18	0	0	5
ZNF394	84124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99092230	99092230	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF394-90	NM_032164	exon3	c.A608G	p.K203R	AACTCTTTGTTCT	.	46	24	21	0	.	6	1	5	0	0	5
MXRA5	25878	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3229333	3229333	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MXRA5-136	NM_015419	exon7	c.T6911A	p.F2304Y	TTGTTGAAGACGA	.	152	52	118	1	.	0	0	0	0	0	4
ARMCX1	51309	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	100808269	100808269	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARMCX1-134	NM_016608	exon4	c.C356T	p.A119V	AACAGGCAAGTGC	.	140	44	113	1	.	36	36	0	0	0	3
ATP11C	286410	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	138901556	138901556	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP11C-198	NM_001010986	exon3	c.C187G	p.L63V	CAAACAGATTCTT	.	93	25	104	1	.	4	4	0	0	0	3
PLXNB3	5365	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	153035385	153035385	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLXNB3-130	NM_001163257	exon8	c.G1689C	p.E563D	CCAGGAGCAGGGC	.	181	68	203	2	.	0	0	0	0	0	3
CHMP4C	92421	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	82667643	82667644	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHMP4C-92	NM_152284	exon3	c.407_408insA	p.T136fs	AGATCACAGAGCA	.	176	63	138	0	.	0	0	0	0	0	3
C17orf97	400566	hgsc.bcm.edu	37	17	263682	263682	+	Missense_Mutation	SNP	G	G	A	rs181299622	unknown	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C17orf97-91	NM_001013672	exon2	c.G1048A	p.E350K	GACCCCGAGGCCC	.	113	6	84	0	G|0.978;A|0.022	70	52	18	0	0	1
EPHA8	2046	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22903176	22903176	+	Missense_Mutation	SNP	G	G	C	rs62642541	byfrequency;alternate_allele	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPHA8-1380	NM_020526	exon3	c.G626C	p.R209P	TGGTGCGCAATCT	.	117	29	146	0	G|0.999;A|0.001	0	0	0	0	0	4
EPHA10	284656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	38192880	38192880	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPHA10-1246	NM_001099439	exon8	c.G1666A	p.A556T	CTGAGGCAGCTGG	.	107	30	148	0	.	0	0	0	0	0	5
SETDB1	9869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150902468	150902468	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SETDB1-228	NM_012432	exon3	c.G286C	p.V96L	TCTTTGGTGAAGG	.	96	19	92	0	.	2	2	0	0	0	5
DENND4B	9909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153911506	153911506	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DENND4B-69	NM_014856	exon13	c.G1835A	p.R612Q	CGTTCCCGGGATT	.	106	17	110	0	.	1	1	0	0	0	4
METTL18	92342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	169762072	169762072	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	METTL18-90	NM_033418	exon2	c.A765G	p.P255P	TACTTTTGGTTTC	.	121	14	88	0	.	32	22	8	2	0	4
TMEM63A	9725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	226050027	226050027	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM63A-91	NM_014698	exon13	c.C976G	p.R326G	TCATCCGTGTGTA	.	142	24	175	0	.	9	7	2	0	0	5
OR6F1	343169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247875887	247875887	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR6F1-68	NM_001005286	exon1	c.C171A	p.T57T	CATGGGGGTATGC	.	94	9	80	0	.	0	0	0	0	0	4
OR14I1	401994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248845366	248845366	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR14I1-46	NM_001004734	exon1	c.C240T	p.I80I	GTTACGGATGGAT	.	521	94	431	0	.	0	0	0	0	0	5
RBP3	5949	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	48382020	48382020	+	Missense_Mutation	SNP	C	C	T	rs140740560	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBP3-153	NM_002900	exon4	c.G3629A	p.G1210E	GTCACCCCCACCC	.	88	21	106	1	C|1.000;T|0.000	0	0	0	0	0	3
VSTM4	196740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50311823	50311823	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VSTM4-154	NM_144984	exon3	c.A540T	p.A180A	TAAGTCTGCGGTG	.	143	32	153	0	.	0	0	0	0	0	5
FAM178A	55719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	102684506	102684506	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001136123	exon5	c.C1748T	p.S583L	AGAGTTCAGGAAA	.	74	20	73	0	.	0	0	0	0	0	5
C10orf137	26098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	127422004	127422004	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C10orf137-590	NM_001202438	exon10	c.C1160T	p.P387L	AAATTCCCAATTT	.	66	13	48	0	.	0	0	0	0	0	4
MGMT	4255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	131565182	131565182	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MGMT-1108	NM_002412	exon5	c.G638T	p.G213V	GCTTGGGAGGGAG	.	87	24	123	0	.	60	50	10	0	0	5
CELF1	10658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47505954	47505954	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CELF1-92	NM_001172639	exon7	c.T510A	p.D170E	CAGGCCATCAGGT	.	145	36	126	0	.	1	1	0	0	0	4
OR5D18	219438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55587904	55587904	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR5D18-71	NM_001001952	exon1	c.A799C	p.N267H	TCCAAAAACTCCA	.	112	30	97	0	.	0	0	0	0	0	5
YPEL4	219539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57414559	57414559	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	YPEL4-90	NM_145008	exon2	c.C22A	p.P8T	GGCCCGGACCGGG	.	132	36	126	0	.	1	0	1	0	0	5
FCHSD2	9873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	72578934	72578934	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FCHSD2-228	NM_014824	exon13	c.G1284A	p.V428V	ACTGGTCACTGCA	.	70	14	77	0	.	0	0	0	0	0	5
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92624213	92624213	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAT3-73	NM_001008781	exon25	c.G13608A	p.V4536V	GAGCGTGGGAGAG	.	69	18	79	0	.	0	0	0	0	0	5
RB1	5925	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	48953769	48953769	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RB1-3784	NM_000321	exon14	c.G1372T	p.E458X	GTAATGGAATCCA	.	43	25	121	1	.	2	2	0	0	0	3
C14orf93	60686	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23456607	23456607	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C14orf93-91	NM_021944	exon7	c.C1434T	p.D478D	CAGTCTGTCTGAG	.	213	45	223	2	.	20	17	3	0	0	3
PRKD1	5587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	30066912	30066912	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRKD1-1534	NM_002742	exon16	c.G2219A	p.R740Q	GACCTCCGGAAAG	.	58	19	47	0	.	6	4	2	0	0	5
RALGAPA1	253959	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	36155747	36155747	+	Splice_Site	DEL	C	C	-	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RALGAPA1-138	NM_194301	exon19	c.2559+1G>-	.	AACTTACCGAGGC	.	129	23	96	0	.	0	0	0	0	0	3
PYGL	5836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	51383442	51383442	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PYGL-91	NM_002863	exon9	c.A1010G	p.Q337R	TTCAGCTGGATGG	.	258	49	232	0	.	0	0	0	0	0	5
NPAP1	23742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	24921531	24921531	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_018958	exon1	c.G517A	p.D173N	GGGGAGGATGACG	.	71	11	58	0	.	0	0	0	0	0	4
ECI1	1632	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	2293441	2293441	+	Splice_Site	SNP	C	C	T	rs141975235	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ECI1-90	NM_001178029	exon6	c.442-1G>A	.	GGCTCCCTGCAGG	.	45	11	66	0	C|1.000;T|0.000	0	0	0	0	0	3
MEFV	4210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3293492	3293492	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MEFV-228	NM_000243	exon10	c.G1995C	p.W665C	CAGGATCCATGCT	.	59	13	76	0	.	0	0	0	0	0	5
SH2B1	25970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	28878100	28878100	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SH2B1-92	NM_001145796	exon2	c.G685C	p.E229Q	CGTTTTGAGAGGC	.	58	10	116	0	.	12	10	2	0	0	4
CHD3	1107	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7794051	7794051	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHD3-228	NM_001005271	exon3	c.G553A	p.G185R	GATGGGGGGCAAA	.	36	17	56	1	.	0	0	0	0	0	4
TOP2A	7153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38555090	38555090	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TOP2A-655	NM_001067	exon26	c.G3388C	p.D1130H	GCATATCAAGAAG	.	104	26	123	0	.	6	1	5	0	0	5
TEX2	55852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	62254810	62254810	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TEX2-91	NM_018469	exon6	c.G2467C	p.E823Q	CCTCCTCAGAGGG	.	50	12	42	0	.	12	9	3	0	0	5
CBX8	57332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	77769859	77769861	+	In_Frame_Del	DEL	GAG	GAG	-	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	GAG	GAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CBX8-226	NM_020649	exon4	c.241_243del	p.81_81del	TACTTTGAGGAGG	.	118	21	175	0	.	0	0	0	0	0	3
FBN3	84467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8130961	8130961	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBN3-100	NM_032447	exon63	c.G8272A	p.V2758I	AGCTGACGCCACG	.	122	21	62	0	.	0	0	0	0	0	5
CD320	51293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8370031	8370031	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CD320-90	NM_016579	exon2	c.C152G	p.S51X	GAGCCTGAGCTGG	.	51	15	59	0	.	9	7	2	0	0	5
CDC37	11140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10506791	10506791	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDC37-522	NM_007065	exon2	c.G191T	p.C64F	CTCTGGCACTCGG	.	237	42	169	0	.	216	187	29	0	0	5
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36212357	36212357	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLL4-697	NM_014727	exon3	c.G2108C	p.S703T	ACCTCAGCCTGCC	.	125	18	129	0	.	0	0	0	0	0	4
PRODH2	58510	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36303397	36303397	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRODH2-92	NM_021232	exon3	c.C464T	p.S155F	TAGACGGATGCTC	.	215	32	190	2	.	0	0	0	0	0	3
ZNF45	7596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44419275	44419275	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF45-91	NM_003425	exon10	c.T313G	p.S105A	TCTGGGAGCAGAA	.	36	8	40	0	.	4	2	2	0	0	4
ZNF701	55762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53085521	53085521	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF701-90	NM_001172655	exon5	c.A407T	p.H136L	TGGTCCACACAGG	.	253	47	246	0	.	1	1	0	0	0	5
ZRANB3	84083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	135988259	135988259	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZRANB3-658	NM_032143	exon13	c.C1778G	p.T593R	GATGGTGTCTCTT	.	287	55	232	0	.	0	0	0	0	0	5
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179446654	179446654	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_001267550	exon315	c.G66442T	p.A22148S	CATAAGCGGCCTT	.	93	27	83	0	.	0	0	0	0	0	5
ANKAR	150709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	190595328	190595328	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKAR-72	NM_144708	exon16	c.3300+1G>T	.	ATTAAGGTATAAA	.	69	13	49	0	.	0	0	0	0	0	4
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	215847044	215847044	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCA12-99	NM_173076	exon30	c.C4446A	p.G1482G	CTTCATGCCTCCT	.	141	21	133	0	.	0	0	0	0	0	4
SEMG1	6406	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	43836470	43836470	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEMG1-92	NM_003007	exon2	c.G532A	p.V178I	ACTTCCGTCTCTG	.	269	91	228	1	.	0	0	0	0	0	3
EPHB1	2047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	134967302	134967302	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPHB1-1492	NM_004441	exon14	c.A2641G	p.M881V	GATAAGATGATCC	.	208	48	238	0	.	0	0	0	0	0	5
GMPS	8833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	155611467	155611467	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GMPS-229	NM_003875	exon2	c.C188T	p.A63V	CATTTGCTATAAA	.	79	24	85	0	.	3	1	2	0	0	5
DTHD1	401124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	36296567	36296567	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DTHD1-46	NM_001170700	exon4	c.C1174G	p.P392A	TGTTCTCCATACC	.	125	36	117	0	.	0	0	0	0	0	5
CTNND2	1501	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	10992734	10992734	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTNND2-293	NM_001332	exon19	c.G3140A	p.R1047Q	CTTTGCCGGTCCC	.	92	21	85	1	.	0	0	0	0	0	4
IPO11	51194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	61779887	61779887	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IPO11-227	NM_001134779	exon11	c.A1192C	p.T398P	TTCTTCACATATC	.	266	60	224	0	.	0	0	0	0	0	5
PCDHA7	56141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140215891	140215891	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHA7-94	NM_031852	exon1	c.C1923T	p.D641D	GACGGACGCACCG	.	224	46	186	0	.	9	5	4	0	0	5
PAQR8	85315	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	52268605	52268605	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAQR8-68	NM_133367	exon2	c.A594C	p.K198N	TGCCAAATATCGT	.	170	37	161	1	.	0	0	0	0	0	4
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	66053948	66053948	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EYS-660	NM_001142801	exon10	c.C1582T	p.H528Y	CTTCATGTGGGAA	.	119	25	95	0	.	0	0	0	0	0	5
JAZF1	221895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	27880467	27880467	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	JAZF1-808	NM_175061	exon4	c.G405A	p.E135E	CACCTCCTCCTCG	.	110	24	111	0	.	15	13	2	0	0	5
CER1	9350	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	14720202	14720202	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CER1-226	NM_005454	exon2	c.C690A	p.I230I	CACCTTGATCACG	.	152	34	185	1	.	0	0	0	0	0	3
MAN1B1	11253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139990835	139990835	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAN1B1-91	NM_016219	exon4	c.A612G	p.T204T	GAGGACAGTCATC	.	123	31	93	0	.	0	0	0	0	0	5
IL1RAPL2	26280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	104440271	104440271	+	Missense_Mutation	SNP	C	C	T	rs146735893	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IL1RAPL2-194	NM_017416	exon3	c.C197T	p.T66M	ATAGCACGGCCCA	.	118	49	173	0	C|1.000;T|0.000	0	0	0	0	0	5
STAB2	55576	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	104147000	104147001	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STAB2-104	NM_017564	exon61	c.6583_6584insC	p.T2195fs	CCAGATACCACTG	.	113	18	111	0	.	0	0	0	0	0	3
PKD1	5310	broad.mit.edu	37	16	2154573	2154573	+	Missense_Mutation	SNP	A	A	C	rs201238819	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKD1-91	NM_000296	exon22	c.T8087G	p.L2696R	AGGATGAGCATCA	.	99	5	88	1	.	5	0	5	0	0	1
LRP3	4037	broad.mit.edu	37	19	33697148	33697148	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRP3-92	NM_002333	exon5	c.C1472A	p.A491D	GCCTGGCCGCCGT	.	121	5	34	1	.	29	25	3	0	1	1
PCDHB7	56129	broad.mit.edu	37	5	140553994	140553994	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB7-95	NM_018940	exon1	c.G1578T	p.A526A	GCAGGCGTTCGAG	.	290	15	143	0	.	14	11	3	0	0	1
COX1	5742	broad.mit.edu;bcgsc.ca	37	MT	7142	7142	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361624	exon1	c.T1239C	p.H413H	AATCCATTTCACT	.	33	30	12	0	.	60791	1561	59201	16	13	2
RPAP2	79871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92789534	92789534	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RPAP2-91	NM_024813	exon8	c.A1057T	p.S353C	GTGTCTAGTTCAG	.	95	73	123	0	.	1	0	1	0	0	5
AGL	178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100376292	100376292	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AGL-92	NM_000644	exon28	c.A3725C	p.D1242A	GAGTTGATGAAGA	.	108	73	159	0	.	3	1	2	0	0	5
VAV3	10451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	108291635	108291635	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VAV3-1339	NM_006113	exon15	c.C1457G	p.T486R	TCTTTTGTTTTGC	.	28	4	38	0	.	0	0	0	0	0	4
RBM15	64783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110884071	110884071	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBM15-661	NM_022768	exon1	c.G2044C	p.D682H	AGCCGGGATCGTT	.	117	86	119	0	.	1	0	1	0	0	5
LCE1F	353137	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	152749023	152749023	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LCE1F-68	NM_178354	exon1	c.G176C	p.C59S	GGGGCTGCTGCAG	.	49	21	52	0	.	0	0	0	0	0	3
ANK3	288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	61819102	61819102	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANK3-107	NM_020987	exon41	c.G12682A	p.D4228N	ACCTGTCATCCAG	.	71	34	88	0	.	0	0	0	0	0	4
ADAMTS14	140766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	72489935	72489935	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS14-232	NM_080722	exon6	c.C1032G	p.R344R	GCAGCGCCAGGAC	.	141	75	103	0	.	0	0	0	0	0	5
TTC40	54777	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134623954	134623954	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001200049	exon57	c.G7623A	p.A2541A	AGGAGACGCACTG	.	318	171	272	2	.	0	0	0	0	0	4
PITPNM1	9600	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	67262351	67262351	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PITPNM1-227	NM_004910	exon18	c.A2708G	p.K903R	TGCCACTTCTCCC	.	93	6	98	0	.	3	3	0	0	0	3
PARP11	57097	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	3921573	3921573	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PARP11-523	NM_020367	exon8	c.A733G	p.S245G	AACGACTGGAATA	.	82	40	64	0	.	16	9	7	0	0	4
CLEC1A	51267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10223960	10223960	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLEC1A-91	NM_016511	exon6	c.C815A	p.P272H	TCAGGGGGGACAT	.	157	69	94	0	.	3	3	0	0	0	5
KIAA1467	57613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	13232844	13232844	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1467-92	NM_020853	exon12	c.G1764A	p.E588E	AATGGAGGGCCAG	.	251	122	177	0	.	6	2	4	0	0	4
TRPV4	59341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	110226237	110226237	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPV4-94	NM_021625	exon13	c.T2176C	p.S726P	CCTTGGAGACCTG	.	201	44	150	0	.	1	1	0	0	0	5
RAD9B	144715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	110960124	110960124	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAD9B-228	NM_152442	exon10	c.G1033C	p.A345P	AGCCCTGCAATGA	.	384	43	278	0	.	1	0	1	0	0	4
RNF17	56163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25341412	25341412	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RNF17-228	NM_001184993	exon2	c.C133T	p.H45Y	ATAGGTCACCATT	.	81	64	101	0	.	0	0	0	0	0	5
MTUS2	23281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	29599148	29599148	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MTUS2-218	NM_001033602	exon1	c.C343A	p.Q115K	ACCATTCAGAGGG	.	64	19	81	0	.	0	0	0	0	0	5
STARD13	90627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	33716447	33716447	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STARD13-94	NM_178006	exon4	c.G387C	p.K129N	ACCTACCTTTTTC	.	56	40	61	0	.	0	0	0	0	0	5
LIG4	3981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	108862298	108862298	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LIG4-659	NM_206937	exon3	c.C1319G	p.P440R	TTGTCTGGCTTGT	.	60	42	52	0	.	10	0	10	0	0	5
SAMD4A	23034	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	55203812	55203812	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SAMD4A-90	NM_015589	exon3	c.A786T	p.P262P	TGTGCCAAACCAG	.	67	49	73	1	.	0	0	0	0	0	3
KCNK10	54207	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	88652422	88652422	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNK10-95	NM_138318	exon7	c.C1089A	p.L363L	CACGCTGAGCCTT	.	155	110	133	1	.	0	0	0	0	0	4
CEP152	22995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	49048340	49048340	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CEP152-70	NM_014985	exon20	c.C3105G	p.I1035M	CAGTTGGATCCGC	.	73	8	84	0	.	0	0	0	0	0	4
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	62170946	62170946	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VPS13C-92	NM_020821	exon75	c.10003-1G>T	.	ATGCAACTAAAAG	.	20	7	42	0	.	1	0	1	0	0	4
MEFV	4210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3293669	3293669	+	Silent	SNP	G	G	C	rs104895213	unknown;alternate_allele	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MEFV-228	NM_000243	exon10	c.C1818G	p.T606T	GTAAGCGGTTTCT	.	117	51	89	0	.	0	0	0	0	0	5
SHISA9	729993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	12996322	12996322	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145204	exon1	c.C401G	p.P134R	GCAAGCCCCCCGC	.	167	34	113	0	.	0	0	0	0	0	5
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30002486	30002486	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAOK2-521	NM_004783	exon19	c.C2747G	p.S916C	GCTTCTCCAGCAT	.	129	47	47	0	.	59	23	36	0	0	5
ATP2C2	9914	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	84402268	84402268	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP2C2-91	NM_014861	exon1	c.C47T	p.S16L	GCTTCTCGGGCGG	.	218	36	81	1	.	0	0	0	0	0	3
COX4I1	1327	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	85838589	85838589	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COX4I1-226	NM_001861	exon3	c.T120G	p.D40E	TATGGATCGGCGT	.	232	98	184	1	.	1204	587	616	1	0	3
SLC35B1	10237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47780364	47780364	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC35B1-90	NM_005827	exon8	c.T772A	p.F258I	TCATAAAGATGAA	.	136	108	195	0	.	1	0	1	0	0	5
DSC2	1824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	28654754	28654754	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DSC2-517	NM_024422	exon12	c.G1783T	p.V595F	CCGCAACAATCTC	.	181	128	228	0	.	0	0	0	0	0	5
LINGO3	645191	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	2290685	2290685	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001101391	exon2	c.T1091C	p.V364A	CGCTGCACGATCC	.	89	28	32	0	.	2	2	0	0	0	4
ZNRF4	148066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	5455609	5455609	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNRF4-135	NM_181710	exon1	c.G107A	p.R36H	CCTCGCGTCCTGG	.	108	11	84	0	.	0	0	0	0	0	4
RDH8	50700	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	10127866	10127866	+	Missense_Mutation	SNP	T	T	G	rs2233793	byfrequency;alternate_allele	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RDH8-94	NM_015725	exon2	c.T297G	p.C99W	CAGCTGTATCCAG	.	146	25	94	0	T|0.968;C|0.032	0	0	0	0	0	3
DHX57	90957	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	39050210	39050210	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DHX57-228	NM_198963	exon17	c.G3216T	p.M1072I	AAACAACATTAGT	.	136	40	222	1	.	10	2	8	0	0	4
ZC3H15	55854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	187373328	187373328	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZC3H15-91	NM_018471	exon10	c.G1149T	p.L383F	TGACTTGGAAGAG	.	113	79	175	1	.	109	2	107	0	0	4
SMARCAL1	50485	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	217285234	217285234	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMARCAL1-293	NM_014140	exon5	c.C1075T	p.Q359X	TTTAAACAGATGG	.	148	115	167	2	.	3	1	2	0	0	3
RBM12	10137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	34242149	34242149	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBM12-93	NM_001198840	exon2	c.C1096G	p.L366V	TCATCAGCATTCT	.	72	11	50	0	.	15	10	5	0	0	4
TTI1	9675	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36641454	36641454	+	Silent	SNP	G	G	T	rs149287636	unknown;alternate_allele	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTI1-94	NM_014657	exon3	c.C765A	p.I255I	CTTTGAGATTCTT	.	81	17	64	1	G|1.000;A|0.000	2	1	1	0	0	4
ZHX3	23051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	39831045	39831045	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZHX3-93	NM_015035	exon3	c.G2512C	p.G838R	GTAGCCCTGGTGG	.	208	94	133	0	.	24	9	15	0	0	5
SEMG1	6406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43836226	43836226	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEMG1-92	NM_003007	exon2	c.A288G	p.S96S	AAAATCACAACGA	.	246	116	184	0	.	0	0	0	0	0	5
SULF2	55959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	46290611	46290611	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SULF2-293	NM_001161841	exon18	c.G2400C	p.R800S	GACATCCCTGTCC	.	242	93	126	0	.	710	334	374	1	1	5
TPTE	7179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	10914373	10914373	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TPTE-344	NM_199261	exon21	c.G1346A	p.G449E	CATTTTCCTAATG	.	258	19	286	0	.	0	0	0	0	0	3
VPRBP	9730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	51457650	51457650	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VPRBP-92	NM_014703	exon14	c.C2615G	p.S872C	GGGGCAGAAGGCG	.	83	57	74	0	.	8	0	8	0	0	5
AMOTL2	51421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	134089857	134089857	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AMOTL2-135	NM_016201	exon2	c.G419T	p.S140I	CTCCGACTGCCTC	.	75	18	19	0	.	2	2	0	0	0	5
NAALADL2	254827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	174814615	174814615	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NAALADL2-47	NM_207015	exon2	c.C79T	p.Q27X	GCAGATCAAAGAG	.	131	102	131	0	.	0	0	0	0	0	5
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30725207	30725207	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH7-229	NM_032457	exon1	c.C2163A	p.P721P	TCCTCCCAGATCT	.	189	79	147	0	.	0	0	0	0	0	5
RASGEF1B	153020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	82366716	82366716	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RASGEF1B-227	NM_152545	exon8	c.A892C	p.N298H	CAATGTTAAAACA	.	139	58	117	0	.	0	0	0	0	0	5
MAST4	375449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	66429340	66429340	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAST4-647	NM_001164664	exon17	c.2094-2A>G	.	CCTCATAGCTTGT	.	251	41	159	0	.	0	0	0	0	0	4
PDE8B	8622	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	76717663	76717663	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDE8B-90	NM_003719	exon20	c.T2268G	p.C756W	CGACTGTGAATGC	.	278	36	173	1	.	17	16	1	0	0	4
PCDHGA7	56108	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140764326	140764326	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_032087	exon1	c.G1860T	p.G620G	GGTTGGGCTGTAC	.	407	67	222	1	.	10	2	8	0	0	4
RARS2	57038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	88229355	88229355	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RARS2-92	NM_020320	exon14	c.G1183C	p.D395H	AAACATCTTCCAG	.	147	104	205	0	.	43	0	43	0	0	5
SCIN	85477	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	12664641	12664641	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCIN-24	NM_001112706	exon6	c.G766C	p.D256H	GTTTCAGATGCAA	.	106	7	78	0	.	0	0	0	0	0	3
AMPH	273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	38500996	38500996	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AMPH-95	NM_139316	exon11	c.C904T	p.P302S	GGACAGGAGGCCC	.	260	54	150	0	.	0	0	0	0	0	5
COL1A2	1278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	94055328	94055328	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL1A2-521	NM_000089	exon45	c.G2962C	p.G988R	CCTGTTGGTCCTG	.	124	46	95	0	.	63	63	0	0	0	5
LMTK2	22853	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	97821142	97821142	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LMTK2-1381	NM_014916	exon11	c.G1365A	p.L455L	CCGGCTGGGTCGT	.	204	33	124	1	.	3	1	2	0	0	4
CADPS2	93664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	122130227	122130227	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CADPS2-94	NM_001167940	exon11	c.G1760C	p.R587T	GTGGCCCTATACA	.	160	75	103	0	.	23	12	11	0	0	5
SULF1	23213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	70533313	70533313	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SULF1-518	NM_001128205	exon14	c.A1421T	p.H474L	GAATTCACAAGTG	.	133	21	86	0	.	0	0	0	0	0	4
SULF1	23213	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	70533314	70533314	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SULF1-518	NM_001128205	exon14	c.C1422T	p.H474H	AATTCACAAGTGT	.	135	22	88	1	.	0	0	0	0	0	3
EXT1	2131	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	118816990	118816990	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EXT1-660	NM_000127	exon10	c.A2026G	p.K676E	ACTGCTTCTTCTG	.	358	76	195	2	.	124	98	26	0	0	3
PRSS3	5646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33797865	33797865	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRSS3-90	NM_007343	exon3	c.T410A	p.V137D	TCAAAGTCCTGGA	.	481	199	294	0	.	0	0	0	0	0	5
COL27A1	85301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	117053185	117053185	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL27A1-94	NM_032888	exon48	c.C4464T	p.P1488P	GGGACCCCCAGGA	.	292	128	231	1	.	0	0	0	0	0	4
TLR4	7099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	120475205	120475205	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TLR4-577	NM_138554	exon3	c.G799A	p.G267R	AATGAAGGAAACT	.	68	18	74	0	.	1	0	1	0	0	5
PRRC2B	84726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	134351358	134351358	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRRC2B-24	NM_013318	exon15	c.C3842T	p.S1281F	AGAGATCCTTCTT	.	66	11	52	0	.	8	8	0	0	0	4
CEL	1056	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	135947102	135947102	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CEL-91	NM_001807	exon11	c.C2222T	p.P741L	TGCCCCCCACAGA	.	107	42	93	0	.	0	0	0	0	0	4
RXRA	6256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137325961	137325961	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RXRA-188	NM_002957	exon9	c.C1149G	p.L383L	GGGGCTCTCGAAC	.	74	24	71	0	.	1	0	1	0	0	5
TRAF2	7186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139818401	139818401	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRAF2-660	NM_021138	exon10	c.G1236C	p.V412V	CTTTGTGGTGATG	.	187	79	138	0	.	16	11	5	0	0	5
ACOT9	23597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	23754092	23754092	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACOT9-133	NM_001037171	exon2	c.G62A	p.G21E	GTCAGTCCTCTTC	.	210	93	151	0	.	24	24	0	0	0	5
CXorf38	159013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	40496395	40496395	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CXorf38-131	NM_144970	exon4	c.G485A	p.R162H	TCATTACGACATT	.	89	33	96	0	.	21	21	0	0	0	5
USP51	158880	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	55515272	55515272	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP51-659	NM_201286	exon2	c.C101T	p.A34V	TTCCCCGCCTTCT	.	79	9	53	0	.	5	5	0	0	0	3
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	76875873	76875873	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATRX-248	NM_000489	exon20	c.C5262A	p.N1754K	AATTAGGTTATTT	.	384	136	287	0	.	0	0	0	0	0	5
ZMAT1	84460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101139569	101139569	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZMAT1-131	NM_001011657	exon7	c.T830C	p.F277S	GTCCGGAAAGTCT	.	149	24	106	0	.	16	15	1	0	0	5
ALG13	79868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	110973752	110973752	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALG13-130	NM_001257230	exon21	c.2090-1G>C	.	TCTCTAGAGCCAG	.	164	37	137	0	.	0	0	0	0	0	4
MAP7D3	79649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135303014	135303014	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAP7D3-110	NM_024597	exon16	c.G2396A	p.R799H	TCTTTACGGACCT	.	158	53	98	0	.	7	7	0	0	0	5
SREBF2	6721	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	42262853	42262854	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SREBF2-154	NM_004599	exon2	c.107_108insT	p.S36fs	TTGTCAGTAATCA	.	84	22	92	0	.	0	0	0	0	0	3
ATP13A2	23400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17318535	17318535	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP13A2-93	NM_022089	exon19	c.C2095T	p.P699S	GGCTGGGCACAGT	.	191	173	254	1	.	48	1	47	0	0	5
GRIN2B	2904	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	13717131	13717131	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRIN2B-231	NM_000834	exon13	c.A3041T	p.Q1014L	CTGGACTGGGTGG	.	286	107	217	1	.	0	0	0	0	0	3
ABCC9	10060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	21960411	21960411	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCC9-96	NM_005691	exon36	c.G4318A	p.A1440T	CAACCGCATCTAA	.	88	49	59	0	.	0	0	0	0	0	5
MDM2	4193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	69233423	69233423	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MDM2-1270	NM_002392	exon11	c.G1288C	p.E430Q	AAAGAAGAGAGTG	.	367	183	309	0	.	2	1	1	0	0	5
MEFV	4210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3304219	3304219	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MEFV-228	NM_000243	exon2	c.G849A	p.P283P	TCCATCCGGAGTG	.	78	42	55	0	.	0	0	0	0	0	5
ATXN2L	11273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28842312	28842312	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATXN2L-92	NM_148414	exon10	c.C1240T	p.R414W	GCACAACGGCCTC	.	25	9	24	0	.	0	0	0	0	0	5
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7579311	7579311	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TP53-70225	NM_000546	exon5	c.375+1G>T	.	AACTGACCGTGCA	.	125	107	189	0	.	6	0	6	0	0	4
ATAD5	79915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29187537	29187537	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATAD5-93	NM_024857	exon10	c.G3043A	p.E1015K	CCAAATGAGTATT	.	96	20	123	0	.	0	0	0	0	0	5
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9057171	9057171	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUC16-566	NM_024690	exon3	c.A30275G	p.D10092G	TCTGTATCTGTGG	.	224	112	125	0	.	0	0	0	0	0	5
ZNF229	7772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44934458	44934458	+	Silent	SNP	G	G	A	rs185368876	unknown	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF229-94	NM_014518	exon6	c.C498T	p.I166I	TAGACCGATAAGC	.	190	104	117	0	G|0.999;A|0.001	8	1	7	0	0	5
BCL3	602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45260388	45260388	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BCL3-848	NM_005178	exon4	c.G634A	p.A212T	CACCTGGCGTGCG	.	129	67	23	0	.	57	22	35	0	0	5
PPP6R1	22870	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55758252	55758252	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPP6R1-67	NM_014931	exon2	c.C220T	p.R74C	TGTAGCGCAGCCG	.	138	54	99	2	.	1	0	1	0	0	4
ZNF134	7693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58132312	58132312	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF134-226	NM_003435	exon3	c.A825G	p.L275L	CAATCTAATTGTA	.	119	53	75	0	.	20	7	13	0	0	5
SOCS5	9655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	46987103	46987103	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SOCS5-659	NM_144949	exon2	c.G1434C	p.R478S	AAATAGGACTTTC	.	119	99	119	0	.	1	0	1	0	0	5
SLC4A11	83959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	3209573	3209573	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC4A11-91	NM_001174090	exon17	c.G2232C	p.W744C	ATGGATCCAAGGC	.	202	26	218	0	.	2	2	0	0	0	4
GATA5	140628	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	61048581	61048581	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GATA5-90	NM_080473	exon3	c.G577A	p.G193R	GGGCCCCGCAGTT	.	248	76	227	2	.	0	0	0	0	0	3
MX2	4600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	42749766	42749766	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MX2-92	NM_002463	exon3	c.C300T	p.C100C	CCCCTGCATTGAC	.	176	25	144	0	.	1	1	0	0	0	4
ADARB1	104	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46640924	46640924	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADARB1-91	NM_015834	exon11	c.G2041A	p.G681S	GTGCACGGCAAGG	.	134	34	102	1	.	0	0	0	0	0	4
PATZ1	23598	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	31741420	31741420	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PATZ1-590	NM_032050	exon1	c.G169A	p.A57T	GCACGGCGCGGTG	.	116	18	34	0	.	4	4	0	0	0	3
SREBF2	6721	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	42271554	42271554	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SREBF2-154	NM_004599	exon7	c.1212delA	p.L404fs	GCTTCTAAAGGGC	.	79	69	131	0	.	0	0	0	0	0	3
MTTP	4547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100512918	100512918	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MTTP-93	NM_000253	exon7	c.A729G	p.L243L	TTTCCTACAAACC	.	117	92	130	0	.	2	0	2	0	0	5
ZFYVE16	9765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79733160	79733160	+	Missense_Mutation	SNP	A	A	G	rs141062809	unknown	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFYVE16-90	NM_001105251	exon4	c.A656G	p.Y219C	ATTCCTATAATTA	.	143	49	69	0	A|1.000;G|0.000	1	1	0	0	0	5
TAS2R41	259287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143175367	143175367	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAS2R41-92	NM_176883	exon1	c.G402T	p.L134L	GCTCCTGTTGGGC	.	93	42	90	0	.	0	0	0	0	0	5
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61766037	61766037	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHD7-141	NM_017780	exon31	c.G6753A	p.S2251S	TAAGTCGGAAGAG	.	169	142	219	0	.	0	0	0	0	0	5
SLC44A1	23446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	108120655	108120655	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC44A1-94	NM_080546	exon7	c.G701A	p.R234K	TAATCAGGTATAT	.	91	45	99	0	.	35	27	8	0	0	5
TEX13A	56157	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	104463887	104463887	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TEX13A-132	NM_031274	exon5	c.C989T	p.P330L	AGCTGAGGCGGAA	.	71	61	79	1	.	0	0	0	0	0	4
MAMLD1	10046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	149678251	149678251	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAMLD1-130	NM_005491	exon6	c.G2304C	p.R768S	GATCAGGTCTTAT	.	75	62	96	0	.	14	0	14	0	0	5
SON	6651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	34926429	34926430	+	Frame_Shift_Ins	INS	-	-	TT	novel	unknown	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SON-97	NM_032195	exon3	c.4892_4893insTT	p.S1631fs	ATTTATCTTTAAC	.	112	17	85	0	.	0	0	0	0	0	3
OGFR	11054	hgsc.bcm.edu	37	20	61444569	61444569	+	Silent	SNP	A	A	G	rs3204348	byfrequency;by1000genomes	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OGFR-68	NM_007346	exon7	c.A1602G	p.P534P	CGAGCCAGCCGAG	.	66	4	17	0	A|0.979;G|0.021	147	135	12	0	0	1
CHRNB2	1141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154542804	154542804	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHRNB2-90	NM_000748	exon4	c.C326A	p.S109Y	TCCCTTCCAAACA	.	114	12	120	0	.	0	0	0	0	0	4
GPR137	56834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64054094	64054094	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR137-68	NM_001170726	exon3	c.T272A	p.L91Q	CCACCCTGTATGC	.	108	38	127	0	.	0	0	0	0	0	5
ZPLD1	131368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	102171984	102171984	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZPLD1-72	NM_175056	exon3	c.375+1G>T	.	CTGGTGGTAAGAT	.	76	8	72	0	.	0	0	0	0	0	4
TBX18	9096	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	85446964	85446964	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBX18-73	NM_001080508	exon8	c.C1263A	p.A421A	TGAGCGGGCACAG	.	260	14	220	0	.	0	0	0	0	0	3
GPRASP2	114928	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	101971094	101971094	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPRASP2-131	NM_138437	exon4	c.G1297T	p.A433S	TTGGGGGCTGTGG	.	204	12	132	0	.	0	0	0	0	0	3
PLXNB3	5365	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153032639	153032639	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLXNB3-130	NM_001163257	exon4	c.G426A	p.L142L	CCAGCTGCTGCTG	.	151	38	72	1	.	0	0	0	0	0	4
OPTN	10133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	13152419	13152419	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OPTN-70	NM_001008212	exon4	c.T312A	p.N104K	TGAGAATGAGAAA	.	256	25	287	0	.	26	24	2	0	0	4
FAM171A1	221061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	15256461	15256461	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM171A1-138	NM_001010924	exon8	c.C1126G	p.P376A	ACAGCGGGCCAGG	.	87	12	70	0	.	1	0	1	0	0	4
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	108382838	108382838	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EXPH5-95	NM_015065	exon6	c.3396delC	p.A1132fs	AGTTGAGGCATGT	.	75	22	98	0	.	0	0	0	0	0	3
CRTC3	64784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	91150615	91150615	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRTC3-393	NM_022769	exon6	c.A482G	p.N161S	GGACCAATTCTGA	.	55	10	56	0	.	0	0	0	0	0	4
SIPA1L3	23094	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38696869	38696869	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SIPA1L3-91	NM_015073	exon22	c.A5335G	p.K1779E	GAGAAGAAGGAGC	.	485	55	211	2	.	3	3	0	0	0	3
CDH4	1002	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	60427870	60427870	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH4-282	NM_001794	exon6	c.A793G	p.I265V	CTGTACATCTACG	.	444	69	237	1	.	0	0	0	0	0	3
PKD2	5311	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	88996821	88996821	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKD2-91	NM_000297	exon15	c.A2882G	p.N961S	GTGGAAATGGGAG	.	137	31	83	0	.	5	4	1	0	0	4
ZNF131	7690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	43161449	43161449	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF131-90	NM_003432	exon5	c.C470T	p.S157L	CTGAGTCATTGCC	.	228	51	160	0	.	2	2	0	0	0	5
PTCHD4	442213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	47976553	47976553	+	Missense_Mutation	SNP	C	C	T	rs191919500	by1000genomes	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001013732	exon2	c.G724A	p.V242M	TCAGCACGAGGCT	.	182	43	204	0	C|0.999;T|0.000	0	0	0	0	0	4
SSX1	6756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48123217	48123217	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SSX1-522	NM_005635	exon6	c.A331T	p.I111F	ATAAAGATCATGC	.	210	29	169	0	.	0	0	0	0	0	5
EML6	400954	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	55074739	55074740	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001039753	exon8	c.1166_1167insT	p.S389fs	ACGGCTCTTTCAT	.	102	20	83	0	.	0	0	0	0	0	3
PCDHB10	56126	mdanderson.org	37	5	140573844	140573844	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB10-92	NM_018930	exon1	c.C1719T	p.T573T	CTGCACCGAGCTG	.	31	15	8	0	.	46	44	2	0	0	1
ZMPSTE24	10269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	40758252	40758252	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZMPSTE24-226	NM_005857	exon10	c.G1339A	p.V447I	TTCCCTGTTTCTG	.	70	52	90	0	.	25	0	25	0	0	5
CGN	57530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151503099	151503099	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CGN-93	NM_020770	exon13	c.G2448A	p.Q816Q	GGAGCAGCAGACA	.	74	56	38	0	.	4	1	3	0	0	5
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186031090	186031090	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HMCN1-113	NM_031935	exon47	c.G7420A	p.V2474I	CTTTCAGTATTAG	.	29	26	37	0	.	0	0	0	0	0	5
ESPL1	9700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53663137	53663137	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ESPL1-228	NM_012291	exon3	c.C411T	p.P137P	TGCTCCCCAGGAC	.	63	29	51	0	.	0	0	0	0	0	5
PPFIA2	8499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	82147977	82147977	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPFIA2-231	NM_001220476	exon2	c.G24A	p.T8T	ATTAATCGTGGGC	.	186	74	117	0	.	0	0	0	0	0	5
ASPG	374569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	104573592	104573592	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001080464	exon12	c.A1343C	p.E448A	ACACAGAGGCAGT	.	598	37	220	0	.	0	0	0	0	0	3
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577114	7577114	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TP53-70225	NM_000546	exon8	c.G824C	p.C275S	CAGGCACAAACAC	.	57	44	97	0	.	53	3	50	0	0	5
SMCR7	125170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18168068	18168068	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMCR7-90	NM_148886	exon4	c.G1388T	p.G463V	CCGAGGGGCTGCT	.	45	43	35	0	.	13	0	13	0	0	5
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	31323005	31323005	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASXL3-49	NM_030632	exon12	c.C3193T	p.R1065W	CAAGCTCGGGCCC	.	25	21	27	0	.	0	0	0	0	0	5
ERGIC3	51614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34129865	34129865	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ERGIC3-585	NM_015966	exon1	c.C19T	p.L7L	GGGAAGCTGAAGC	.	137	55	38	0	.	181	103	78	0	0	5
DDX27	55661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47855847	47855847	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DDX27-537	NM_017895	exon16	c.G1962C	p.Q654H	GTTCCAGACCAAA	.	17	7	21	0	.	60	60	0	0	0	5
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266137	41266137	+	Missense_Mutation	SNP	C	C	T	rs121913409	bycluster	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTNNB1-24361	NM_001098209	exon3	c.C134T	p.S45F	CTCCTTCTCTGAG	.	96	77	151	0	.	45	1	44	0	0	5
CRYBG3	131544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	97596823	97596823	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRYBG3-68	NM_153605	exon4	c.C6785T	p.P2262L	AGGAACCAGTGTC	.	76	52	84	0	.	0	0	0	0	0	5
DAXX	1616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33288323	33288323	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DAXX-731	NM_001141970	exon4	c.G1121C	p.R374P	TTTTCCCGAAGGC	.	21	15	26	0	.	43	3	40	0	0	5
GTPBP10	85865	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	89982277	89982278	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GTPBP10-68	NM_001042717	exon2	c.181_182del	p.61_61del	AAAGACAGGTATC	.	169	65	129	0	.	0	0	0	0	0	3
EPHB4	2050	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100417840	100417840	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPHB4-1446	NM_004444	exon5	c.C887T	p.T296I	CCAATGGTGTTAG	.	141	64	130	1	.	36	23	13	0	0	3
ATP6V0A4	50617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138413506	138413506	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP6V0A4-91	NM_130841	exon17	c.G2010C	p.Q670H	CCTTACCTGGGAT	.	108	49	89	0	.	0	0	0	0	0	5
PTPRD	5789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	8528683	8528683	+	Missense_Mutation	SNP	C	C	A	rs149175517	unknown;alternate_allele	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPRD-912	NM_001040712	exon4	c.G449T	p.S150I	TTACCACTGGCTG	.	72	61	104	0	C|1.000;T|0.000	0	0	0	0	0	5
BCL11A	53335	ucsc.edu;mdanderson.org	37	2	60688336	60688336	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BCL11A-1149	NM_018014	exon4	c.A1711G	p.K571E	CGCGCTTATGCTT	.	93	87	16	1	.	2	0	2	0	0	2
KIF17	57576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	21013968	21013968	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF17-94	NM_001122819	exon8	c.C1851T	p.A617A	CACCTCGGCAAAC	.	67	37	117	0	.	0	0	0	0	0	5
BPNT1	10380	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	220236230	220236233	+	Frame_Shift_Del	DEL	GAAA	GAAA	-	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	GAAA	GAAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BPNT1-91	NM_006085	exon7	c.538_541del	p.180_181del	TCAGCTGAAACCC	.	120	23	228	0	.	0	0	0	0	0	3
BPNT1	10380	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	220236235	220236252	+	In_Frame_Del	DEL	CCAAAGGCGCCTAAACCT	CCAAAGGCGCCTAAACCT	-	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	CCAAAGGCGCCTAAACCT	CCAAAGGCGCCTAAACCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BPNT1-91	NM_006085	exon7	c.519_536del	p.173_179del	TGAAACCCAAAGG	.	95	23	222	0	.	0	0	0	0	0	3
RPP38	10557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	15145497	15145497	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RPP38-91	NM_001265601	exon2	c.G184T	p.D62Y	ATTGAAGATAAGA	.	112	39	85	0	.	11	8	3	0	0	5
DDX50	79009	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	70672928	70672928	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DDX50-91	NM_024045	exon5	c.T650A	p.L217X	TTGTTTTGGCTCC	.	175	9	134	0	.	0	0	0	0	0	3
PDZD7	79955	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	10	102775566	102775566	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDZD7-136	NM_001195263	exon11	c.C1576T	p.Q526X	TCTCCTGGTCTGC	.	146	58	159	0	.	0	0	0	0	0	3
KLHL42	57542	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	27950800	27950800	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_020782	exon3	c.C1219T	p.R407C	CCCAACCGCAGGA	.	216	75	193	0	.	11	7	4	0	0	4
LARP4	113251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50822742	50822742	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LARP4-91	NM_001170808	exon3	c.T191C	p.I64T	AAGATATATGTAA	.	35	14	38	0	.	1	0	1	0	0	5
MARS	4141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57908595	57908595	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MARS-654	NM_004990	exon16	c.T2060G	p.L687R	TCACCCTGGAGCT	.	102	32	121	0	.	43	27	16	0	0	5
NCOR2	9612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124904549	124904549	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NCOR2-229	NM_006312	exon15	c.A1436G	p.Y479C	CTCTTATAGTTCT	.	67	32	98	0	.	5	3	2	0	0	5
OLFM4	10562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	53603040	53603040	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OLFM4-69	NM_006418	exon1	c.G69A	p.G23G	TTTGGGGGATGTG	.	42	31	57	0	.	0	0	0	0	0	5
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29533326	29533326	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NF1-3353	NM_001128147	exon12	c.T1329C	p.F443F	TATGTTTGGTGAA	.	189	106	222	0	.	4	0	4	0	0	5
SYT4	6860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	40854213	40854213	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SYT4-132	NM_020783	exon2	c.G181A	p.D61N	AAATATCAACTCC	.	64	15	46	0	.	0	0	0	0	0	5
PGAP1	80055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197707448	197707448	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PGAP1-93	NM_024989	exon26	c.C2627G	p.S876X	TACCTTGATTTTA	.	152	99	203	0	.	0	0	0	0	0	5
MYLK2	85366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	30414412	30414412	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYLK2-760	NM_033118	exon7	c.T977C	p.M326T	AGGAAATGGTGTT	.	163	59	170	0	.	0	0	0	0	0	5
TKTL2	84076	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	164394479	164394479	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TKTL2-95	NM_032136	exon1	c.G408A	p.M136I	ATAAGCCATTCCA	.	155	56	109	2	.	0	0	0	0	0	3
TRIP13	9319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	912038	912038	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRIP13-90	NM_004237	exon10	c.A947G	p.K316R	ACATCAAGCAGTA	.	210	70	143	0	.	2	2	0	0	0	5
NLN	57486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	65105961	65105961	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLN-90	NM_020726	exon11	c.C1812G	p.C604W	ATACTGCTCAGAA	.	109	18	85	0	.	0	0	0	0	0	5
RAD17	5884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	68684968	68684968	+	Silent	SNP	A	A	T	rs140360093	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAD17-205	NM_133339	exon9	c.A1035T	p.S345S	TTCTTCAAAAGGT	.	49	8	48	0	A|1.000;T|0.000	0	0	0	0	0	4
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79029380	79029380	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CMYA5-77	NM_153610	exon2	c.G4792A	p.V1598I	GTGGAGGTATCTT	.	140	37	78	0	.	0	0	0	0	0	5
SLC35B3	51000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	8417697	8417697	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC35B3-90	NM_001142540	exon8	c.T811C	p.Y271H	AAATGTATACAAA	.	162	87	151	0	.	5	0	5	0	0	5
LAMB4	22798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	107677982	107677982	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LAMB4-140	NM_007356	exon30	c.C4530G	p.H1510Q	TGGTAGGTGAATG	.	226	19	211	0	.	0	0	0	0	0	3
KIAA1967	57805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22475230	22475230	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1967-92	NM_021174	exon16	c.C2012T	p.S671L	AGGATTCGGAGGT	.	181	66	173	0	.	55	32	23	0	0	5
STMN2	11075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	80553660	80553660	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STMN2-515	NM_007029	exon3	c.G163C	p.E55Q	GCTTTTGAGCTGA	.	90	10	59	0	.	0	0	0	0	0	4
BNC2	54796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	16418993	16418993	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BNC2-92	NM_017637	exon7	c.A3294T	p.V1098V	CTAATCTACTGAA	.	115	72	174	0	.	0	0	0	0	0	5
KIAA0368	23392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114128569	114128569	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA0368-68	NM_001080398	exon49	c.C5792A	p.A1931D	GCCAAAGCCTCAG	.	105	60	136	0	.	70	20	50	0	0	5
FAM155B	27112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	68725226	68725226	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM155B-131	NM_015686	exon1	c.G101C	p.C34S	AACCTTGCGCCGA	.	55	44	30	0	.	0	0	0	0	0	4
UTP14A	10813	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	129059084	129059084	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UTP14A-132	NM_006649	exon12	c.G1662A	p.K554K	GAAAAAGAAGGAG	.	70	5	63	0	.	12	12	0	0	0	3
RABEP2	79874	broad.mit.edu	37	16	28922226	28922226	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RABEP2-137	NM_024816	exon7	c.C1072T	p.R358W	GCACCCGCTCCTG	.	89	4	75	0	.	59	56	3	0	0	1
ND2	0	bcgsc.ca	37	MT	4959	4959	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361453	exon1	c.G490A	p.A164T	ATCATAGCAGGCA	.	71	21	15	0	.	95490	56627	38760	60	43	1
SPACA7	122258	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	113055396	113055396	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPACA7-154	NM_145248	exon5	c.T363A	p.N121K	TGCTAATGCAAAT	.	91	31	74	1	.	0	0	0	0	0	3
CPNE6	9362	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	24546115	24546115	+	Missense_Mutation	SNP	G	G	A	rs201909603	unknown	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CPNE6-93	NM_006032	exon14	c.G1193A	p.R398H	CCTACCGTCGTTG	.	98	8	69	0	G|0.999;A|0.001	0	0	0	0	0	3
KCTD19	146212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67335694	67335694	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCTD19-69	NM_001100915	exon5	c.G775T	p.G259C	ACATACCCATGTT	.	118	45	140	0	.	0	0	0	0	0	5
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7574023	7574023	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TP53-70225	NM_000546	exon10	c.1004delG	p.R335fs	CGCTCACGCCCAC	.	105	69	157	0	.	0	0	0	0	0	3
PRKAR1A	5573	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	66511671	66511695	+	Frame_Shift_Del	DEL	AGAGACCCATGGCATTCCTCAGGGA	AGAGACCCATGGCATTCCTCAGGGA	-	novel	unknown	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	AGAGACCCATGGCATTCCTCAGGGA	AGAGACCCATGGCATTCCTCAGGGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRKAR1A-1141	NM_001276290	exon1	c.131_155del	p.44_52del	GACCTGAGAGACC	.	39	11	92	0	.	0	0	0	0	0	3
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	125521361	125521361	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTNAP5-524	NM_130773	exon15	c.C2344G	p.R782G	CCCTTGCGTTGCT	.	82	11	85	0	.	0	0	0	0	0	4
RBM46	166863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	155720332	155720332	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBM46-69	NM_144979	exon4	c.C1018T	p.H340Y	GAGAGCCACCCAA	.	232	14	130	0	.	0	0	0	0	0	3
FSTL5	56884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	162380371	162380371	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FSTL5-158	NM_020116	exon14	c.C1709T	p.T570I	TGTAGTGTTGGTG	.	119	27	88	0	.	0	0	0	0	0	5
WDR27	253769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	170013695	170013695	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDR27-69	NM_182552	exon22	c.A2281G	p.I761V	CGCCAATGGCCGT	.	181	64	148	0	.	3	0	3	0	0	5
CRIPAK	285464	hgsc.bcm.edu	37	4	1388867	1388867	+	Missense_Mutation	SNP	A	A	C	rs76058011	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRIPAK-90	NM_175918	exon1	c.A568C	p.I190L	CGCCTGATCACAC	.	106	15	29	0	A|0.994;C|0.006	33	0	33	0	0	1
HIST1H2BK	85236	broad.mit.edu;bcgsc.ca	37	6	27114542	27114542	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIST1H2BK-68	NM_080593	exon1	c.G36A	p.K12K	GCCCTTCTTGGGC	.	333	27	255	1	.	299	244	55	0	0	2
ND2	0	bcgsc.ca	37	MT	5495	5495	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361453	exon1	c.T1026C	p.F342F	CCCTTTTATACTA	.	231	20	55	0	.	3213	2997	215	1	0	1
DENND2C	163259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	115168233	115168233	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DENND2C-229	NM_001256404	exon4	c.G373C	p.E125Q	AGCTTTCAATTTC	.	33	14	100	0	.	0	0	0	0	0	5
RRNAD1	51093	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	156703977	156703979	+	In_Frame_Del	DEL	CTC	CTC	-	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	CTC	CTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RRNAD1-90	NM_015997	exon6	c.813_815del	p.271_272del	ACACTTCTCCTGC	.	106	31	156	0	.	0	0	0	0	0	3
PEAR1	375033	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156878718	156878718	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PEAR1-71	NM_001080471	exon11	c.G1301A	p.C434Y	CTCACTGTGCTAG	.	84	30	89	0	.	0	0	0	0	0	3
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181767904	181767904	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNA1E-95	NM_001205293	exon48	c.G6876A	p.G2292G	GCCTGGGCCAGGC	.	55	24	26	0	.	0	0	0	0	0	5
RASSF5	83593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	206730911	206730911	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RASSF5-660	NM_182665	exon1	c.G10T	p.D4Y	ACCGTGGACAGCA	.	112	39	136	0	.	4	4	0	0	0	5
PARP1	142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	226566961	226566961	+	Missense_Mutation	SNP	C	C	T	rs200485374	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PARP1-727	NM_001618	exon12	c.G1627A	p.A543T	CATGCGCAGAGTG	.	303	69	234	0	C|0.999;T|0.000	96	75	21	0	0	5
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73571772	73571772	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH23-563	NM_022124	exon64	c.G9380A	p.G3127E	TTGATGGGTGAGT	.	292	63	224	0	.	0	0	0	0	0	5
ZDHHC6	64429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	114193036	114193036	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZDHHC6-90	NM_022494	exon8	c.G907A	p.E303K	ACTGTTCTATCTG	.	21	7	22	0	.	5	5	0	0	0	5
ENO4	387712	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118639436	118639436	+	Silent	SNP	A	A	C	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ENO4-69	NM_001242699	exon13	c.A1662C	p.R554R	TGAACGAGTGACT	.	254	72	205	1	.	1	1	0	0	0	4
AGBL2	79841	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47712028	47712028	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AGBL2-92	NM_024783	exon10	c.G1231C	p.A411P	TGTTTGCCACTGA	.	157	20	207	1	.	0	0	0	0	0	3
OR5M11	219487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56310464	56310464	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001005245	exon1	c.C270A	p.T90T	GGAAATGGTCTTC	.	153	44	203	0	.	0	0	0	0	0	5
NECAP1	25977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8242868	8242868	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NECAP1-91	NM_015509	exon3	c.T274G	p.F92V	CGCTACTTTGTAA	.	260	75	203	0	.	52	44	8	0	0	5
XPOT	11260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	64813853	64813853	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	XPOT-652	NM_007235	exon7	c.G493A	p.A165T	TAGGAGGCTCGTA	.	175	19	24	0	.	0	0	0	0	0	3
APEX1	328	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20925557	20925557	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	APEX1-661	NM_080648	exon5	c.G847C	p.D283H	CGCCTTGATTACT	.	219	103	163	1	.	400	213	186	0	1	3
STON2	85439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	81743692	81743692	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STON2-95	NM_001256430	exon6	c.G1963C	p.V655L	GGAAAACATCCTC	.	227	96	349	0	.	1	1	0	0	0	5
NTN3	4917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2523112	2523112	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NTN3-90	NM_006181	exon3	c.G1244A	p.R415H	AAAGCCGCTCCCC	.	119	27	97	0	.	0	0	0	0	0	4
TSNAXIP1	55815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67859153	67859153	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TSNAXIP1-90	NM_018430	exon7	c.C630G	p.D210E	GGAGGACATGTCA	.	129	44	164	0	.	0	0	0	0	0	5
ZNF23	7571	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	71482631	71482631	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF23-90	NM_145911	exon6	c.T1297A	p.S433T	ATTGGGAGTTACA	.	33	7	39	0	.	5	4	1	0	0	3
NUFIP2	57532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27614591	27614591	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NUFIP2-138	NM_020772	exon2	c.G421C	p.A141P	TGTTGGCCTTTAC	.	142	53	78	0	.	10	6	4	0	0	5
KRTAP9-1	728318	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	39346567	39346567	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001190460	exon1	c.C429A	p.C143X	CACCTGCTGCAGG	.	205	46	146	0	.	0	0	0	0	0	3
KRT33A	3883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39505635	39505635	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRT33A-90	NM_004138	exon2	c.G394T	p.D132Y	CATTGTCGATCTG	.	208	62	171	0	.	0	0	0	0	0	5
UBTF	7343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	42288160	42288162	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBTF-90	NM_014233	exon13	c.1357_1359del	p.453_453del	CCTGACCTTCTTC	.	128	53	59	0	.	0	0	0	0	0	3
CARD14	79092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78172210	78172210	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CARD14-231	NM_024110	exon13	c.G1671A	p.M557I	CCTCATGCGGCGG	.	93	32	46	0	.	0	0	0	0	0	5
DSC3	1825	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	28605791	28605791	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DSC3-94	NM_024423	exon5	c.G565C	p.E189Q	CTCTTTCTATATA	.	138	8	178	0	.	0	0	0	0	0	3
FUT6	2528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	5832103	5832103	+	Missense_Mutation	SNP	C	C	T	rs140726017	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FUT6-90	NM_000150	exon3	c.G476A	p.R159H	TCGCTGCGGTAGG	.	373	160	282	0	C|1.000;T|0.000	0	0	0	0	0	4
ZNF653	115950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11598309	11598309	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF653-90	NM_138783	exon4	c.G969A	p.A323A	AGGGCCCGCAATG	.	172	36	65	0	.	16	16	0	0	0	5
MAP1S	55201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17838767	17838767	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAP1S-90	NM_018174	exon5	c.C2574T	p.N858N	GGAGAACGTCAGC	.	134	36	31	0	.	37	31	6	0	0	5
ZNF737	100129842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	20728340	20728340	+	Silent	SNP	A	A	G	rs187919890	by1000genomes	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF737-1	NM_001159293	exon4	c.T669C	p.H223H	TCCAGTATGAATT	.	44	17	34	0	A|0.999;G|0.000	2	2	0	0	0	4
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	36211355	36211357	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	AAG	AAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLL4-697	NM_014727	exon3	c.1106_1108del	p.369_370del	AGAAGAAAGAAGA	.	120	29	128	0	.	0	0	0	0	0	3
PNMAL2	57469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46997582	46997582	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PNMAL2-1	NM_020709	exon1	c.A1141G	p.K381E	TGTCCTTGGACAT	.	69	16	66	0	.	8	5	3	0	0	5
IZUMO2	126123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50666247	50666247	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IZUMO2-90	NM_152358	exon1	c.G205T	p.A69S	TCAGCGCGTAGTC	.	274	71	149	0	.	0	0	0	0	0	5
TTC31	64427	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	74710496	74710496	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTC31-90	NM_022492	exon2	c.A88C	p.K30Q	GCACCCAAACTTT	.	98	5	95	0	.	14	14	0	0	0	3
SNRNP200	23020	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	96965141	96965141	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SNRNP200-162	NM_014014	exon6	c.655delG	p.E219fs	GAACCTCCCCGTA	.	173	32	158	0	.	0	0	0	0	0	3
SCN3A	6328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166032830	166032830	+	Silent	SNP	G	G	T	rs112118503	unknown;alternate_allele	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCN3A-141	NM_001081676	exon3	c.C75A	p.I25I	TTTTTCGATAGCA	.	66	23	78	0	G|0.500;A|0.500	0	0	0	0	0	5
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179586707	179586707	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_001267550	exon78	c.T22683C	p.Y7561Y	GATTGTATAGTTT	.	233	77	245	1	.	0	0	0	0	0	3
FAM171B	165215	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	187626567	187626567	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM171B-141	NM_177454	exon8	c.A1498G	p.N500D	AACAACAATCTAT	.	74	21	87	0	.	2	2	0	0	0	4
COL5A2	1290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	189963460	189963460	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL5A2-92	NM_000393	exon5	c.G395A	p.G132E	GCCGGTCCTGGAC	.	40	7	68	0	.	0	0	0	0	0	4
SH3BP1	23616	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	38051288	38051288	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SH3BP1-90	NM_018957	exon18	c.C1703T	p.P568L	AGCGCCCGGCGCC	.	79	31	40	0	.	0	0	0	0	0	4
TRIOBP	11078	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	38122417	38122417	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRIOBP-136	NM_001039141	exon7	c.G3854C	p.R1285T	CCCAGAGACAGCC	.	67	19	15	0	.	2	2	0	0	0	4
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	41266134	41266136	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTNNB1-24361	NM_001098209	exon3	c.131_133del	p.44_45del	CAGCTCCTTCTCT	.	162	51	210	0	.	0	0	0	0	0	3
QARS	5859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49136628	49136628	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	QARS-91	NM_005051	exon18	c.G1673C	p.R558P	ACATCACGCACAC	.	155	51	193	0	.	197	122	75	0	0	5
USP19	10869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49155468	49155468	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP19-663	NM_001199160	exon3	c.G210A	p.G70G	TGTGATCCCAGCT	.	54	22	60	0	.	8	7	1	0	0	5
OR5K3	403277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	98110047	98110047	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR5K3-68	NM_001005516	exon1	c.G538A	p.D180N	TTCTGTGATGTTC	.	54	10	62	0	.	0	0	0	0	0	4
CCDC14	64770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	123633689	123633689	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC14-68	NM_022757	exon12	c.G2676A	p.A892A	TAATGCCGCAAGG	.	122	35	102	0	.	28	17	11	0	0	5
GPR125	166647	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	22390318	22390319	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	AA	AA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR125-91	NM_145290	exon19	c.2975_2976del	p.992_992del	AGAATGAAAAGTG	.	71	17	80	0	.	0	0	0	0	0	3
PCDH18	54510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	138442524	138442524	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH18-185	NM_019035	exon4	c.T3067C	p.Y1023H	CAGAATAGGTGTC	.	134	66	214	0	.	3	3	0	0	0	5
PLK2	10769	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	57755592	57755592	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLK2-409	NM_006622	exon1	c.G195C	p.S65S	CGGCCCCGAGTGC	.	72	22	37	0	.	37	26	11	0	0	4
HSPA4	3308	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	132406071	132406072	+	Frame_Shift_Del	DEL	AT	AT	-	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HSPA4-226	NM_002154	exon4	c.312_313del	p.104_105del	GGTGACATATATG	.	93	26	68	0	.	0	0	0	0	0	3
PCDHA3	56145	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140182806	140182806	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHA3-98	NM_031497	exon1	c.C2024A	p.A675E	GCCAGGCACCCAA	.	254	85	101	2	.	0	0	0	0	0	4
ECI2	10455	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	4116248	4116248	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ECI2-90	NM_206836	exon10	c.A1045G	p.K349E	CCTCTTTTGAAAT	.	171	49	152	2	.	552	418	134	0	0	3
RNF144B	255488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	18459916	18459916	+	Silent	SNP	C	C	A	rs139497819	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RNF144B-226	NM_182757	exon6	c.C615A	p.G205G	TGAAGGCTGCGCT	.	188	44	143	0	C|1.000;A|0.000	0	0	0	0	0	4
NELFE	7936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31922199	31922199	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_002904	exon8	c.C763T	p.R255W	CTCGCCGTTCAGG	.	131	27	107	0	.	121	93	28	0	0	5
KHDC1L	100129128	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	73935030	73935032	+	In_Frame_Del	DEL	CTC	CTC	-	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	CTC	CTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KHDC1L-1	NM_001126063	exon1	c.100_102del	p.34_34del	GATGAGCTCCTCC	.	120	35	110	0	.	0	0	0	0	0	3
KIAA1009	22832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	84896081	84896083	+	In_Frame_Del	DEL	GAA	GAA	-	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	GAA	GAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1009-91	NM_014895	exon12	c.1368_1370del	p.456_457del	AATGATGAAGAAT	.	88	16	84	0	.	0	0	0	0	0	3
TMEM200A	114801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	130762220	130762220	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM200A-23	NM_001258277	exon3	c.G653C	p.S218T	TTCGGAGCAGTTT	.	145	55	160	0	.	8	4	4	0	0	5
SERAC1	84947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	158569912	158569912	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SERAC1-90	NM_032861	exon5	c.C340T	p.R114W	GATTCCGCAGTAT	.	116	28	62	0	.	8	8	0	0	0	5
SUN1	23353	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	900013	900014	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SUN1-90	NM_001130965	exon14	c.1773_1774del	p.591_592del	AATAACAGAGGCG	.	122	38	142	0	.	0	0	0	0	0	3
WIPF3	644150	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	29923752	29923752	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WIPF3-69	NM_001080529	exon5	c.G642C	p.V214V	CCCGGTGGTTGCA	.	44	11	27	0	.	1	1	0	0	0	3
URGCP	55665	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	43916339	43916340	+	Frame_Shift_Del	DEL	TC	TC	-	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	URGCP-94	NM_001077663	exon6	c.2722_2723del	p.908_908del	ATGTTTTCGAGTA	.	173	54	176	0	.	0	0	0	0	0	3
LRRD1	401387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	91793979	91793979	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001161528	exon1	c.C538T	p.Q180X	CCCCTTGAAATGT	.	38	16	58	0	.	0	0	0	0	0	5
EPHB4	2050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100416169	100416169	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPHB4-1446	NM_004444	exon7	c.G1395A	p.L465L	GTAGTCCAGCACA	.	60	23	60	0	.	16	11	5	0	0	5
ANKRD46	157567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	101540156	101540156	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD46-22	NM_001270378	exon4	c.A387G	p.E129E	CAAAGATTCCAGC	.	128	29	98	0	.	18	18	0	0	0	5
TMEM74	157753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	109796810	109796810	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM74-228	NM_153015	exon2	c.C518T	p.S173F	TCTATAGACTTCC	.	256	42	180	0	.	0	0	0	0	0	5
ZCCHC6	79670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	88938270	88938270	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZCCHC6-92	NM_024617	exon13	c.G2395A	p.E799K	CACACTCTTTAGC	.	84	18	83	0	.	1	1	0	0	0	5
MAP3K15	389840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	19428068	19428068	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAP3K15-335	NM_001001671	exon12	c.T1722C	p.F574F	GGCTGTAAAATTC	.	80	19	58	0	.	5	5	0	0	0	5
UBQLN2	29978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	56591776	56591776	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBQLN2-131	NM_013444	exon1	c.C1470G	p.G490G	TATAGGCCCTGTA	.	69	21	88	0	.	40	40	0	0	0	5
RBM41	55285	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	106358708	106358708	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBM41-131	NM_001171080	exon4	c.C397T	p.R133C	GAATGCGCTGACG	.	107	50	121	1	.	1	1	0	0	0	4
PAK3	5063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	110395637	110395637	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAK3-1043	NM_001128166	exon6	c.431-1G>A	.	TTTGCAGATAAAA	.	116	37	164	0	.	0	0	0	0	0	4
SHANK3	85358	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	51144507	51144508	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SHANK3-69	NM_033517	exon17	c.1995_1996insC	p.P665fs	CCCACCGCCCCCC	.	112	38	96	0	.	0	0	0	0	0	3
KIAA1731	85459	broad.mit.edu;ucsc.edu	37	11	93462779	93462779	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1731-22	NM_033395	exon27	c.7400-1G>A	.	CCAGCAGAAACCC	.	13	3	22	0	.	2	0	2	0	0	2
OGFR	11054	hgsc.bcm.edu	37	20	61444569	61444569	+	Silent	SNP	A	A	G	rs3204348	byfrequency;by1000genomes	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OGFR-68	NM_007346	exon7	c.A1602G	p.P534P	CGAGCCAGCCGAG	.	57	11	27	0	A|0.979;G|0.021	123	99	24	0	0	1
F5	2153	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	169526030	169526030	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	F5-157	NM_000130	exon6	c.T806C	p.I269T	AAATGAATGGAGA	.	75	12	82	1	.	0	0	0	0	0	3
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	124345570	124345570	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH10-95	NM_207437	exon38	c.C6407T	p.T2136M	GGCTGACGACAAA	.	124	8	105	0	.	0	0	0	0	0	3
ACSL3	2181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	223782837	223782837	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACSL3-228	NM_203372	exon5	c.C630T	p.I210I	CAACATCATTACT	.	81	13	56	0	.	5	4	1	0	0	4
FASTKD5	60493	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	3128060	3128060	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FASTKD5-90	NM_021826	exon2	c.A1657G	p.M553V	AATTCATATCCTT	.	96	5	89	0	.	15	15	0	0	0	3
RAPGEF2	9693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	160252876	160252876	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAPGEF2-637	NM_014247	exon9	c.C1187G	p.P396R	AAGCTCCTTTGCC	.	146	47	182	0	.	5	2	3	0	0	5
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140222697	140222697	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHA8-92	NM_031856	exon1	c.G1791T	p.V597V	CGCAGTGGACGCC	.	283	44	90	0	.	0	0	0	0	0	5
SLC35B2	347734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44222996	44222996	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC35B2-91	NM_178148	exon4	c.G746A	p.G249E	CTGACCCCAATGG	.	162	33	147	0	.	18	18	0	0	0	5
GRM1	2911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	146678777	146678777	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRM1-1080	NM_000838	exon6	c.A1549G	p.S517G	AACAAGAGTGGAG	.	202	24	192	0	.	0	0	0	0	0	4
SDR16C5	195814	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	57221513	57221513	+	Missense_Mutation	SNP	C	C	G	rs140271354	unknown;alternate_allele	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SDR16C5-92	NM_138969	exon4	c.G539C	p.G180A	CTTAATCCAGCTG	.	70	5	49	0	C|1.000;T|0.000	0	0	0	0	0	3
OMD	4958	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	95179219	95179219	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OMD-206	NM_005014	exon2	c.T622C	p.F208L	TGGCAAAGATTTT	.	69	6	62	0	.	0	0	0	0	0	3
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	19518980	19518980	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBR4-612	NM_020765	exon10	c.G1198T	p.G400C	CCTCACCACCAGC	.	210	17	179	0	.	0	0	0	0	0	3
TIE1	7075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	43779576	43779576	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TIE1-1404	NM_005424	exon14	c.C2346A	p.T782T	TTTAACCCTGGTG	.	300	25	174	0	.	1	1	0	0	0	3
C1orf87	127795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	60499262	60499262	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C1orf87-154	NM_152377	exon7	c.G915T	p.L305F	AATCTCCAACAGA	.	150	24	135	0	.	0	0	0	0	0	5
LRRC7	57554	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	70493957	70493957	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC7-163	NM_020794	exon16	c.G1784A	p.R595H	GAGTGCGTGTTGA	.	211	43	203	1	.	0	0	0	0	0	4
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	103487285	103487285	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL11A1-586	NM_080629	exon9	c.G1322C	p.G441A	GGTTCTCCTTTCT	.	129	48	110	0	.	17	11	6	0	0	5
RPRD2	23248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	150444740	150444740	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RPRD2-23	NM_015203	exon11	c.G3316A	p.V1106I	CAGACCGTAGAGT	.	52	8	54	0	.	31	31	0	0	0	4
DNAH14	127602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	225528307	225528307	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH14-23	NM_001373	exon67	c.G10303C	p.D3435H	TTAGAAGATCAAC	.	213	26	212	0	.	1	1	0	0	0	4
BICC1	80114	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	60273078	60273078	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BICC1-72	NM_001080512	exon1	c.G175T	p.E59X	AAACTTGAGGCCA	.	477	24	186	0	.	0	0	0	0	0	3
KIF11	3832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	94397209	94397209	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF11-227	NM_004523	exon16	c.A2067G	p.L689L	TGAACTACAAGAA	.	212	17	155	0	.	4	4	0	0	0	3
CYP2C8	1558	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	96802824	96802824	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CYP2C8-90	NM_000770	exon7	c.G972A	p.Q324Q	CTCTTCCTGGACT	.	224	44	137	1	.	0	0	0	0	0	3
PIK3AP1	118788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	98408466	98408466	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIK3AP1-519	NM_152309	exon7	c.G1135T	p.A379S	TCTCAGCGATGGT	.	295	60	150	0	.	0	0	0	0	0	5
PPRC1	23082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	103901266	103901266	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPRC1-227	NM_015062	exon5	c.C3001G	p.P1001A	CCACCTCCTTTGC	.	95	10	85	0	.	10	6	4	0	0	4
NELL1	4745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	21250963	21250963	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NELL1-155	NM_006157	exon14	c.C1512A	p.C504X	CACCTGCAAACCG	.	277	36	235	0	.	0	0	0	0	0	5
FERMT3	83706	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63978534	63978534	+	Missense_Mutation	SNP	C	C	G	rs78810429	byfrequency;alternate_allele	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FERMT3-23	NM_031471	exon4	c.C405G	p.H135Q	CCGGCACCCCGAG	.	88	22	66	0	C|0.993;T|0.007	0	0	0	0	0	4
PYGM	5837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64518843	64518843	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PYGM-92	NM_005609	exon16	c.C1923T	p.L641L	GACACGGAGGCGG	.	205	52	142	0	.	1	1	0	0	0	5
HTR3A	3359	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	113857492	113857492	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HTR3A-90	NM_213621	exon7	c.C976A	p.P326T	GAGAAACCCGCCC	.	136	12	132	0	.	0	0	0	0	0	3
PLEKHA5	54477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	19499950	19499950	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLEKHA5-227	NM_001256470	exon24	c.G2732T	p.R911L	CACCTCGTCCTCC	.	113	15	75	0	.	0	0	0	0	0	4
OVCH1	341350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	29604304	29604304	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OVCH1-210	NM_183378	exon22	c.A2729G	p.E910G	TGTCTTTCTTCAT	.	78	23	64	0	.	0	0	0	0	0	5
SCN8A	6334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52188154	52188154	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCN8A-29	NM_001177984	exon25	c.4402-1G>T	.	TCCCCAGAACAAA	.	97	18	60	0	.	0	0	0	0	0	4
MYBPC1	4604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	102043128	102043128	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYBPC1-94	NM_206819	exon15	c.A1287G	p.G429G	AGAGGGAGCAACA	.	126	22	101	0	.	0	0	0	0	0	5
HECTD4	283450	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	112690234	112690234	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001109662	exon23	c.C3144A	p.R1048R	CTGAGCGCGAACT	.	62	5	50	0	.	0	0	0	0	0	3
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	39452353	39452353	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FREM2-100	NM_207361	exon22	c.T8754C	p.F2918F	GGTGTTTCTATGC	.	133	20	155	0	.	1	1	0	0	0	4
TBPL2	387332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	55903342	55903342	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBPL2-90	NM_199047	exon2	c.C545A	p.S182Y	GTTATGGATGCCA	.	342	40	218	0	.	0	0	0	0	0	5
TGFB3	7043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	76447102	76447102	+	Silent	SNP	T	T	G	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TGFB3-524	NM_003239	exon1	c.A135C	p.G45G	GATCTGTCCCCTA	.	339	62	194	0	.	7	6	1	0	0	5
CEP128	145508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	81046735	81046735	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CEP128-91	NM_152446	exon19	c.G2839A	p.E947K	CCATTTCTTCATC	.	23	5	32	0	.	0	0	0	0	0	3
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105415287	105415287	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AHNAK2-47	NM_138420	exon7	c.C6501G	p.A2167A	GCCTGGGGCAGAC	.	235	96	140	0	.	0	0	0	0	0	5
KCNG4	93107	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	84256305	84256305	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNG4-93	NM_172347	exon3	c.C1078T	p.L360L	GCCCCAGCGTCTG	.	377	97	101	1	.	0	0	0	0	0	3
USP10	9100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	84806251	84806251	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP10-636	NM_001272075	exon13	c.C2115G	p.I705M	GCTTATCAAAAAT	.	124	13	140	0	.	27	18	9	0	0	4
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29664421	29664421	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NF1-3353	NM_001042492	exon43	c.G6463T	p.E2155X	CTGACAGAGTTCT	.	47	32	55	0	.	0	0	0	0	0	5
ITGA3	3675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48165662	48165662	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITGA3-229	NM_002204	exon25	c.A3119C	p.Q1040P	AGAGCCAGCCGTC	.	166	18	142	0	.	12	10	2	0	0	4
TMEM104	54868	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72786401	72786401	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM104-90	NM_017728	exon5	c.C312T	p.Y104Y	CAACTACGAGCGG	.	215	44	106	1	.	44	34	10	0	0	4
FDXR	2232	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72862659	72862659	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FDXR-226	NM_001258012	exon4	c.A431G	p.H144R	CCAGAATGGGCCG	.	419	90	160	1	.	846	606	239	0	1	4
TNRC6C	57690	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	76067213	76067213	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNRC6C-24	NM_018996	exon7	c.G2826C	p.R942R	GAGCCGGCTGATC	.	331	27	187	0	.	1	1	0	0	0	3
SEH1L	81929	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	12986994	12986994	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEH1L-90	NM_001013437	exon9	c.C1204A	p.H402N	TATCCTCACCCTC	.	66	26	74	0	.	35	19	16	0	0	4
SMAD7	4092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	46447841	46447841	+	Silent	SNP	G	G	A	rs141213977	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMAD7-414	NM_005904	exon4	c.C1182T	p.T394T	CTGCACGGTAAAG	.	167	54	165	0	G|0.999;A|0.001	14	9	5	0	0	5
C19orf57	79173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	14000524	14000524	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C19orf57-93	NM_024323	exon6	c.G1145A	p.R382K	AAGGCCCTCCTGT	.	51	10	24	0	.	4	4	0	0	0	4
GIPC1	10755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14591159	14591159	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GIPC1-226	NM_202468	exon5	c.C613T	p.R205C	AGGTACGGCCTCG	.	312	42	49	0	.	143	112	31	0	0	5
NFKBID	84807	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	36380791	36380791	+	Splice_Site	DEL	C	C	-	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NFKBID-90	NM_139239	exon12	c.888+1G>-	.	TACTTACCCCCTC	.	127	54	46	0	.	0	0	0	0	0	3
VN1R2	317701	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53762590	53762590	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VN1R2-90	NM_173856	exon1	c.T962G	p.V321G	CATTGGTGAGCAC	.	399	55	229	1	.	0	0	0	0	0	3
TMEM214	54867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27257050	27257050	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM214-115	NM_017727	exon2	c.G267A	p.K89K	GAACAAGAAGCAG	.	226	43	177	0	.	37	29	8	0	0	5
ASPRV1	151516	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	70188127	70188127	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASPRV1-69	NM_152792	exon1	c.G694A	p.D232N	CCAGATCGCCATC	.	256	32	176	1	.	1	0	1	0	0	3
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	84848429	84848429	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH6-69	NM_001370	exon25	c.T3907A	p.Y1303N	GCTGACTATCAGG	.	261	17	191	0	.	0	0	0	0	0	3
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	116447467	116447467	+	Silent	SNP	C	C	T	rs151071213	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DPP10-142	NM_001178034	exon7	c.C558T	p.Y186Y	GCAGTACGCGGCC	.	71	15	53	0	C|0.999;T|0.001	20	12	8	0	0	4
LCT	3938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	136590717	136590717	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LCT-101	NM_002299	exon2	c.G684C	p.E228D	CAGGAGCTCCGGG	.	46	7	41	0	.	0	0	0	0	0	4
BPIFB6	128859	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	31626724	31626724	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_174897	exon9	c.C856A	p.L286M	GGTGAGCTGCCCC	.	151	12	108	0	.	0	0	0	0	0	3
PCK1	5105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	56136550	56136550	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCK1-227	NM_002591	exon2	c.G83C	p.R28T	CAGTGAGGGAGTT	.	71	14	71	0	.	1	1	0	0	0	5
CDH4	1002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	59829909	59829909	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH4-282	NM_001794	exon2	c.G85A	p.E29K	ACTAGAGAGACCT	.	81	17	102	0	.	2	2	0	0	0	5
C21orf62	56245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	34166441	34166441	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C21orf62-91	NM_001162495	exon4	c.C292G	p.L98V	GGACCAGCGTGAA	.	134	47	154	0	.	0	0	0	0	0	5
ZBTB21	49854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43412530	43412530	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001098402	exon3	c.G1675C	p.A559P	GACCTGCTGTTGA	.	132	39	86	0	.	0	0	0	0	0	5
NF2	4771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30057313	30057313	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NF2-4696	NM_016418	exon8	c.G795A	p.S265S	CATCTCGTACAGT	.	62	8	56	0	.	18	8	10	0	0	4
SOX10	6663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38374133	38374133	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SOX10-650	NM_006941	exon3	c.C438T	p.N146N	ACTTTCGTTCAGC	.	46	5	45	0	.	0	0	0	0	0	4
CCR3	1232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46306920	46306920	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCR3-660	NM_178328	exon3	c.A334C	p.I112L	TTCTGGATCCACT	.	287	109	336	0	.	0	0	0	0	0	5
STX19	415117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	93733581	93733581	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STX19-90	NM_001001850	exon2	c.C533G	p.S178C	TCTTCAGACATCT	.	50	25	71	0	.	0	0	0	0	0	5
SEC22A	26984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	122990434	122990434	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEC22A-91	NM_012430	exon7	c.C789G	p.I263M	CTTAATCTGTCTA	.	45	9	47	0	.	14	14	0	0	0	4
NSUN7	79730	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	40810424	40810426	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NSUN7-90	NM_024677	exon12	c.1625_1627del	p.542_543del	AACGGGAGAAGAA	.	120	25	150	0	.	0	0	0	0	0	3
ART3	419	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	77033649	77033649	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ART3-92	NM_001130016	exon12	c.A1147G	p.I383V	TCTGCTATAAATC	.	44	4	39	0	.	0	0	0	0	0	3
ENPEP	2028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	111409785	111409785	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ENPEP-157	NM_001977	exon2	c.A733G	p.I245V	TATACAATATCTA	.	74	15	52	0	.	5	5	0	0	0	4
TDO2	6999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	156830150	156830150	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TDO2-514	NM_005651	exon5	c.G415C	p.D139H	GCCTTGGACTTCA	.	58	23	39	0	.	1	0	1	0	0	5
PDLIM4	8572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	131607853	131607853	+	Silent	SNP	G	G	A	rs1140552	bycluster	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDLIM4-91	NM_003687	exon7	c.G924A	p.A308A	CAAGGCGCGCGTG	.	206	55	116	0	G|1.000;A|0.000	0	0	0	0	0	5
RAD50	10111	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	131940646	131940647	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAD50-229	NM_005732	exon16	c.2673_2674del	p.891_892del	GCAGACTGTGGAA	.	169	41	175	0	.	0	0	0	0	0	3
RBM27	54439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145631438	145631438	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBM27-70	NM_018989	exon9	c.G1444C	p.D482H	GTTCCAGGTAAGC	.	98	28	66	0	.	0	0	0	0	0	5
F13A1	2162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	6175004	6175004	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	F13A1-519	NM_000129	exon12	c.T1556C	p.V519A	ATGTCAACGTTGG	.	309	83	271	0	.	0	0	0	0	0	5
NOTCH4	4855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32166275	32166275	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOTCH4-1321	NM_004557	exon26	c.C4679T	p.A1560V	GGGAGCGCCCCAC	.	79	27	65	0	.	2	2	0	0	0	5
FBXO9	26268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	52960318	52960318	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXO9-227	NM_012347	exon11	c.T1091G	p.L364R	AACCACTTGACTA	.	56	7	50	0	.	0	0	0	0	0	4
MLIP	90523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	54095603	54095603	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLIP-99	NM_138569	exon11	c.C1205T	p.T402I	CACAGACCCTCTC	.	133	31	104	0	.	7	4	3	0	0	5
IBTK	25998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	82921272	82921272	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IBTK-92	NM_015525	exon14	c.T2309G	p.V770G	ATGGTCACGTCAC	.	299	67	340	0	.	14	8	6	0	0	5
SLC2A12	154091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	134373567	134373567	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC2A12-91	NM_145176	exon1	c.A52T	p.T18S	CGGCTGTCCCCTT	.	52	16	42	0	.	0	0	0	0	0	5
ETV1	2115	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	13971355	13971355	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ETV1-659	NM_004956	exon9	c.G574A	p.E192K	AGGGTTCAGAAAG	.	267	18	250	0	.	5	5	0	0	0	3
AMPH	273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	38466556	38466556	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AMPH-95	NM_139316	exon15	c.C1213G	p.Q405E	TTACCTGTGTGAA	.	118	20	144	0	.	0	0	0	0	0	5
ZMIZ2	83637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44800087	44800087	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZMIZ2-137	NM_031449	exon9	c.A1135T	p.T379S	CCCATGACCCCAA	.	320	45	247	0	.	9	9	0	0	0	5
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	88964602	88964602	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF804B-101	NM_181646	exon4	c.T2306C	p.I769T	ATGATATAACAAA	.	220	68	202	0	.	0	0	0	0	0	5
TSTA3	7264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144695922	144695922	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TSTA3-91	NM_003313	exon8	c.C729T	p.S243S	CCCACCGGAGAGG	.	223	49	128	0	.	1	0	1	0	0	5
OR2S2	56656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35958062	35958062	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2S2-68	NM_019897	exon1	c.G34C	p.G12R	CGAACCCCATCAC	.	104	13	102	0	.	0	0	0	0	0	4
ZCCHC6	79670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	88954993	88954994	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	AA	AA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZCCHC6-92	NM_024617	exon8	c.1165_1166del	p.389_389del	GCATGGAAGTCTG	.	53	17	64	0	.	0	0	0	0	0	3
RBM3	5935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48433575	48433575	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBM3-131	NM_006743	exon2	c.T7A	p.S3T	ATGTCCTCTGAAG	.	43	19	42	0	.	103	30	73	0	0	5
RRAGB	10325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	55758011	55758011	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RRAGB-130	NM_016656	exon6	c.C592G	p.R198G	GATCAACGGGACC	.	29	9	52	0	.	5	4	1	0	0	5
ECE1	1889	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	21599251	21599252	+	Frame_Shift_Ins	INS	-	-	GT	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ECE1-93	NM_001397	exon4	c.434_435insAC	p.R145fs	CCCCAGCGTGAGT	.	319	87	217	0	.	0	0	0	0	0	3
PCBP2	5094	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	53856277	53856278	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCBP2-226	NM_005016	exon8	c.517_518insC	p.S173fs	TCCCAGTCCCCCC	.	84	18	81	0	.	0	0	0	0	0	3
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7574011	7574012	+	Frame_Shift_Ins	INS	-	-	CGAAG	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TP53-70225	NM_001126112	exon10	c.1016_1017insCTTCG	p.E339fs	AACATCTCGAAGC	.	118	25	176	0	.	0	0	0	0	0	3
PKN1	5585	hgsc.bcm.edu	37	19	14552087	14552087	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKN1-1481	NM_213560	exon2	c.C172T	p.L58L	CTGAAGCTGAAGG	.	91	8	9	0	.	32	27	5	0	0	1
COX1	5742	broad.mit.edu	37	MT	5957	5957	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361624	exon1	c.A54G	p.L18L	AACACTATACCTA	.	86	16	9	0	.	17717	13452	4261	2	2	1
ND6	0	bcgsc.ca	37	MT	14415	14415	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361681	exon1	c.G259A	p.E87K	AGACCTCAACCCC	.	88	81	6	0	.	1065	120	944	1	0	1
CYTB	0	broad.mit.edu	37	MT	14846	14846	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361789	exon1	c.G100A	p.G34S	AACTTCGGCTCAC	.	198	13	16	0	.	5928	5614	312	2	0	1
TIE1	7075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	43775126	43775126	+	Missense_Mutation	SNP	C	C	T	rs140823224	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TIE1-1404	NM_005424	exon9	c.C1256T	p.A419V	TTCTTGCGGACAG	.	217	11	262	0	C|1.000;T|0.000	9	9	0	0	0	3
ZNF638	27332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	71650459	71650459	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF638-94	NM_014497	exon22	c.C3815G	p.S1272W	CTGTTTCGGAAAT	.	159	8	172	0	.	18	18	0	0	0	3
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130361853	130361853	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL6A6-76	NM_001102608	exon30	c.T5213A	p.V1738E	AGTATGTGCGAGA	.	111	39	106	0	.	0	0	0	0	0	5
OR2J3	442186	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	29079940	29079940	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2J3-90	NM_001005216	exon1	c.G273A	p.P91P	GGGCCCGGAAAAG	.	130	12	175	0	.	0	0	0	0	0	3
CFTR	1080	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	117242878	117242878	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CFTR-518	NM_000492	exon16	c.2620-2A>T	.	CATTCCAGGTGGC	.	213	13	176	0	.	0	0	0	0	0	3
EPHA1	2041	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	143098587	143098587	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPHA1-1436	NM_005232	exon3	c.C262A	p.R88S	CCCCGCGGTAGAT	.	169	21	149	1	.	0	0	0	0	0	3
SCRIB	23513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144892937	144892937	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCRIB-228	NM_015356	exon12	c.G1323T	p.P441P	GCTCGGCGGGGCA	.	50	19	24	0	.	9	3	6	0	0	5
ABCA1	19	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107568702	107568702	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCA1-1016	NM_005502	exon31	c.C4284G	p.P1428P	CTGGCAGGGCGTG	.	113	37	120	0	.	0	0	0	0	0	5
EIF2D	1939	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	206784680	206784680	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EIF2D-92	NM_006893	exon2	c.C104G	p.T35S	TGATCAGTTCCAA	.	132	96	136	1	.	17	3	14	0	0	4
KANSL2	54934	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49075305	49075305	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_017822	exon2	c.C111T	p.H37H	ACGAGGGTGAGAG	.	270	128	148	1	.	8	3	5	0	0	3
FAM179B	23116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45542716	45542716	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM179B-93	NM_015091	exon19	c.A5115G	p.K1705K	TATCAAAAAGAGT	.	76	28	80	0	.	8	1	7	0	0	5
CILP2	148113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19656298	19656298	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CILP2-91	NM_153221	exon8	c.G2944A	p.E982K	GACCCCGAGCGTC	.	95	31	33	0	.	1	1	0	0	0	5
CYTB	0	broad.mit.edu;bcgsc.ca	37	MT	15635	15635	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361789	exon1	c.T889C	p.S297P	TTACTATCCATCC	.	48	18	22	0	.	28935	17584	11317	16	18	2
ITLN2	142683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160922445	160922445	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITLN2-91	NM_080878	exon3	c.G158T	p.C53F	TCTTTGCAGCTTC	.	111	41	78	0	.	0	0	0	0	0	5
MAML2	84441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	95825407	95825407	+	Silent	SNP	C	C	T	rs61901862	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAML2-850	NM_032427	exon2	c.G1788A	p.Q596Q	CTGCTGCTGCTGC	.	220	24	180	0	C|0.250;T|0.750	121	109	12	0	0	3
GLB1L2	89944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134240909	134240909	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GLB1L2-25	NM_138342	exon13	c.A1223G	p.K408R	CAATCAAGTCTGA	.	98	45	63	0	.	0	0	0	0	0	5
DUSP6	1848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	89744754	89744754	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DUSP6-846	NM_001946	exon2	c.A449G	p.N150S	TCTAGATTGGTCT	.	45	24	33	0	.	17	13	4	0	0	5
C12orf49	79794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117160973	117160973	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C12orf49-91	NM_024738	exon2	c.C167T	p.P56L	GGGATGGGCTGAT	.	250	47	204	0	.	9	7	2	0	0	5
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120616700	120616700	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GCN1L1-94	NM_006836	exon6	c.C480T	p.H160H	CACGGCGTGCTTG	.	75	28	67	0	.	5	2	3	0	0	5
RB1	5925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	48934194	48934194	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RB1-3784	NM_000321	exon7	c.C649T	p.Q217X	TCATTTCAGTTAA	.	32	24	85	0	.	0	0	0	0	0	5
OTX2	5015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	57268974	57268974	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OTX2-205	NM_001270525	exon3	c.C373G	p.P125A	GAGCTGGAGATGT	.	56	22	42	0	.	0	0	0	0	0	5
DICER1	23405	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	95571420	95571420	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DICER1-961	NM_030621	exon21	c.3257delC	p.P1086fs	TCCGCAGGAAGTG	.	140	64	115	0	.	0	0	0	0	0	3
GP2	2813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	20335574	20335574	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GP2-94	NM_001502	exon3	c.T99C	p.Y33Y	GTTTCCATAACCT	.	208	82	149	0	.	0	0	0	0	0	5
RBBP6	5930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24580870	24580870	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBBP6-230	NM_006910	exon17	c.A2859C	p.L953F	AGAGTTATTAGAG	.	78	35	60	0	.	17	6	11	0	0	5
TOP2A	7153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38561085	38561085	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TOP2A-655	NM_001067	exon17	c.C2004T	p.F668F	CTCCATGAAATTA	.	98	38	81	0	.	6	6	0	0	0	5
C1QTNF1	114897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	77043879	77043879	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C1QTNF1-91	NM_030968	exon4	c.C555T	p.F185F	CAAGTTCTACTGC	.	120	94	180	1	.	36	1	35	0	0	5
ROCK1	6093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	18629131	18629131	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ROCK1-1026	NM_005406	exon4	c.G336A	p.M112I	CTTTATCATTTCA	.	58	20	63	0	.	2	2	0	0	0	5
ZNF558	148156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8922403	8922403	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF558-90	NM_144693	exon6	c.A763G	p.K255E	TCCTCTTGTGGCT	.	151	65	135	0	.	7	6	1	0	0	5
ADD2	119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	70933534	70933534	+	Missense_Mutation	SNP	C	C	T	rs200519011	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADD2-93	NM_001185055	exon2	c.G55A	p.E19K	TCTCTTCGCTCAT	.	41	18	17	0	C|0.999;T|0.000	0	0	0	0	0	3
LYG2	254773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	99860495	99860495	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LYG2-91	NM_175735	exon5	c.T487C	p.F163L	TGGGGAATTTTTT	.	90	48	92	0	.	0	0	0	0	0	5
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266103	41266103	+	Missense_Mutation	SNP	G	G	C	rs121913399	unknown;alternate_allele	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTNNB1-24361	NM_001098209	exon3	c.G100C	p.G34R	GACTCTGGAATCC	.	265	59	185	0	.	150	114	36	0	0	5
ADCY5	111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	123010075	123010075	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADCY5-94	NM_183357	exon18	c.C3212T	p.A1071V	ATGACCGCCACAC	.	566	334	379	0	.	0	0	0	0	0	5
RNF212	285498	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	1107223	1107223	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RNF212-68	NM_194439	exon1	c.C30T	p.C10C	CTGGAAGCAGCGA	.	212	67	90	1	.	0	0	0	0	0	3
C1QTNF7	114905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	15444216	15444216	+	Silent	SNP	C	C	T	rs140722077	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C1QTNF7-90	NM_001135170	exon3	c.C684T	p.F228F	GACCTTCGACGCC	.	90	48	69	0	C|0.999;T|0.001	0	0	0	0	0	5
GK2	2712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	80328985	80328985	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GK2-94	NM_033214	exon1	c.G370A	p.E124K	GATCCTCAACAGT	.	156	43	170	0	.	0	0	0	0	0	5
UNC5C	8633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	96163681	96163681	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UNC5C-94	NM_003728	exon7	c.G1007A	p.R336H	CTCCTGCGCCAGT	.	141	89	130	0	.	1	0	1	0	0	5
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	126367514	126367514	+	Silent	SNP	C	C	T	rs147010455	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAT4-108	NM_024582	exon8	c.C7260T	p.S2420S	CACCAGCGCATTG	.	132	30	148	0	C|0.999;T|0.001	0	0	0	0	0	4
TLR2	7097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	154624343	154624343	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TLR2-523	NM_003264	exon3	c.C284G	p.S95C	AAGATTCTTTTTC	.	154	54	168	0	.	0	0	0	0	0	5
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16701501	16701501	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO10-3	NM_012334	exon25	c.C3003T	p.D1001D	GGCGTCGTCGTCG	.	135	53	91	0	.	0	0	0	0	0	5
SLC1A3	6507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	36671233	36671233	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC1A3-90	NM_004172	exon4	c.T422C	p.I141T	TAATCATTGTCAT	.	347	135	224	0	.	10	3	7	0	0	5
SNX18	112574	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	53815125	53815125	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SNX18-226	NM_052870	exon1	c.C1343T	p.T448M	ACCACACGGCCAA	.	482	69	265	2	.	23	21	2	0	0	3
SV2C	22987	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	75594617	75594617	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SV2C-91	NM_014979	exon10	c.1503-2A>G	.	TTGGGCAGATTCA	.	131	50	109	1	.	0	0	0	0	0	3
ZNF391	346157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27368446	27368446	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF391-69	NM_001076781	exon3	c.C297T	p.H99H	TAAACACCAAAGA	.	77	43	69	0	.	0	0	0	0	0	5
SEC63	11231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	108194052	108194052	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEC63-227	NM_007214	exon20	c.C2099A	p.S700X	GAGTCTGATCTCA	.	153	78	174	0	.	72	31	41	0	0	5
PEX7	5191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	137193359	137193359	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PEX7-90	NM_000288	exon8	c.G771A	p.V257V	TTCTGTGCTGGCC	.	33	9	33	0	.	19	7	12	0	0	4
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	72981348	72981348	+	Silent	SNP	G	G	T	rs146503939	unknown;alternate_allele	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPA1-230	NM_007332	exon3	c.C354A	p.L118L	TCTGCTGAGAAGA	.	90	40	79	0	G|1.000;C|0.000	0	0	0	0	0	5
PTPRD	5789	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	8376721	8376721	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPRD-912	NM_002839	exon38	c.G4392T	p.K1464N	GTCACACTTCACC	.	87	31	119	1	.	0	0	0	0	0	3
PSIP1	11168	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	15478495	15478495	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PSIP1-658	NM_021144	exon7	c.C609T	p.P203P	AGGACAGGGCTGT	.	186	12	301	0	.	44	40	4	0	0	3
KCTD3	51133	ucsc.edu;bcgsc.ca	37	1	215781465	215781465	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCTD3-93	NM_016121	exon14	c.C1416A	p.S472S	ACTATCCCTGGAG	.	181	77	162	2	.	97	64	33	0	0	2
SLC18A2	6571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	119003690	119003690	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC18A2-90	NM_003054	exon3	c.G330A	p.A110A	CAACGCGTCCGCT	.	121	42	113	0	.	0	0	0	0	0	5
OR5L1	219437	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55579239	55579239	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR5L1-73	NM_001004738	exon1	c.G297A	p.V99V	CATGGTGCAATTC	.	168	96	135	1	.	0	0	0	0	0	4
ARAP1	116985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	72412758	72412758	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARAP1-91	NM_001040118	exon16	c.C2238T	p.H746H	GCCACTGTGGCTC	.	73	28	76	0	.	23	12	11	0	0	5
KCNA1	3736	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	5020979	5020979	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNA1-228	NM_000217	exon2	c.C435A	p.P145P	TCTGCCCGAGAAG	.	117	45	94	1	.	0	0	0	0	0	4
GNS	2799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	65146525	65146525	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GNS-514	NM_002076	exon2	c.A205G	p.K69E	TGGTTTTCTTTAG	.	49	9	37	0	.	0	0	0	0	0	4
DYRK2	8445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	68051422	68051422	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DYRK2-861	NM_006482	exon3	c.C735T	p.H245H	AGTCCACCAGCAC	.	81	19	55	0	.	14	10	4	0	0	5
SSH1	54434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109182933	109182933	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SSH1-94	NM_018984	exon15	c.C1981T	p.P661S	CCTCAGGAGCCCC	.	97	49	79	0	.	10	6	4	0	0	5
ACACB	32	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	109616998	109616999	+	Frame_Shift_Del	DEL	TC	TC	-	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACACB-98	NM_001093	exon9	c.1543_1544del	p.515_515del	GCTGTGTCTCTGT	.	116	26	86	0	.	0	0	0	0	0	3
POMP	51371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	29242664	29242664	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POMP-90	NM_015932	exon4	c.C217G	p.L73V	CAGGGTCTATTTG	.	70	37	93	0	.	194	105	89	0	0	5
CACNA1H	8912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1254107	1254107	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNA1H-67	NM_021098	exon10	c.C2100A	p.C700X	GAGCTGCCCGTAC	.	131	64	71	0	.	31	23	8	0	0	5
VAT1L	57687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	77918647	77918647	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VAT1L-90	NM_020927	exon7	c.A1025T	p.Y342F	GGCTCTACAACCA	.	78	7	70	0	.	105	102	3	0	0	4
SARM1	23098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26723260	26723260	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_015077	exon10	c.C2127A	p.G709G	TGCAGGCTCTGAC	.	41	18	61	0	.	6	3	3	0	0	5
EMILIN2	84034	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	2892375	2892375	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EMILIN2-93	NM_032048	exon4	c.G2250A	p.S750S	CAGGTCGCATTCC	.	15	9	29	0	.	0	0	0	0	0	4
BAZ2B	29994	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	160245862	160245862	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BAZ2B-94	NM_013450	exon21	c.C3210A	p.D1070E	CTTTTGGTCTGCT	.	54	5	64	0	.	0	0	0	0	0	3
XPC	7508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	14207051	14207051	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	XPC-662	NM_004628	exon6	c.A656G	p.Y219C	TTTCGATAGAAGC	.	110	26	127	0	.	11	9	2	0	0	5
MTHFD2L	441024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	75065574	75065574	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MTHFD2L-91	NM_001144978	exon4	c.A515G	p.H172R	GATTTCATATTAT	.	93	34	59	0	.	8	2	6	0	0	5
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	85594085	85594085	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDFY3-93	NM_014991	exon68	c.G10517A	p.C3506Y	TTCTGACAAACAC	.	99	50	66	0	.	23	14	9	0	0	5
CLPTM1L	81037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1334422	1334422	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLPTM1L-153	NM_030782	exon7	c.C873G	p.F291L	GACAAAGAAGGTC	.	62	14	60	0	.	32	32	0	0	0	5
PSD2	84249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139197105	139197105	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PSD2-91	NM_032289	exon5	c.T1056C	p.S352S	CCTCAGTTTCTTC	.	140	33	66	0	.	0	0	0	0	0	5
PCDHB4	56131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140503194	140503194	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB4-93	NM_018938	exon1	c.G1614A	p.P538P	TTCTCCGGCTTTG	.	664	59	173	0	.	0	0	0	0	0	3
SLC6A7	6534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149589012	149589012	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC6A7-90	NM_014228	exon14	c.C1745T	p.S582L	GACCATCGCTGGA	.	462	209	293	1	.	0	0	0	0	0	5
STC2	8614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	172745041	172745041	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STC2-93	NM_003714	exon4	c.G718A	p.G240R	CTTCCCCGTGGTG	.	102	20	66	0	.	2	1	1	0	0	5
TBC1D9B	23061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179290951	179290951	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBC1D9B-154	NM_198868	exon22	c.G3250A	p.D1084N	GCTCGTCCTCCTC	.	101	26	62	0	.	224	164	60	0	0	5
GCM1	8521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	52999074	52999074	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GCM1-90	NM_003643	exon3	c.A124C	p.K42Q	TGTGTTTGGCATA	.	151	131	192	1	.	0	0	0	0	0	4
OGFRL1	79627	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	72006483	72006483	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OGFRL1-68	NM_024576	exon6	c.G655T	p.A219S	GCTCGGGCTGTTA	.	42	4	52	0	.	8	8	0	0	0	3
ALDH8A1	64577	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	135239705	135239705	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALDH8A1-94	NM_022568	exon7	c.C1312A	p.L438M	ACTGCAGCTTCTT	.	141	58	182	1	.	0	0	0	0	0	4
VIP	7432	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	153077288	153077288	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VIP-90	NM_003381	exon5	c.C355T	p.P119S	GAAGACCCTGTAC	.	49	14	66	0	.	0	0	0	0	0	4
GSTK1	373156	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	142962356	142962356	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GSTK1-90	NM_001143679	exon4	c.T555C	p.N185N	CCAGAATGAAGAC	.	54	18	37	1	.	15	12	3	0	0	3
CSPP1	79848	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	68084742	68084742	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSPP1-138	NM_024790	exon23	c.G2905T	p.A969S	TTAGACGCTGCCA	.	80	6	45	0	.	4	4	0	0	0	3
TMEM74	157753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	109796609	109796609	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM74-228	NM_153015	exon2	c.C719T	p.T240M	CCCAGCGTGAGGA	.	114	31	103	0	.	0	0	0	0	0	5
PNPLA7	375775	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	140356481	140356481	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PNPLA7-91	NM_001098537	exon32	c.C3658A	p.Q1220K	CGTGCTGGTAGCC	.	41	4	27	0	.	0	0	0	0	0	3
RAB40AL	282808	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102192303	102192303	+	Silent	SNP	G	G	T	rs150070913	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAB40AL-92	NM_001031834	exon1	c.G57T	p.L19L	CCTGCTGGTGGGC	.	410	91	249	2	G|0.998;T|0.002	1	1	0	0	0	3
CSDE1	7812	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	115261240	115261241	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSDE1-227	NM_001242891	exon20	c.2481_2482insA	p.N827fs	CATTGAGTTATCT	.	82	35	95	0	.	0	0	0	0	0	3
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	117	47	13	0	C|0.960;G|0.040	23	10	13	0	0	1
TRAM1L1	133022	broad.mit.edu;bcgsc.ca	37	4	118005441	118005441	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRAM1L1-90	NM_152402	exon1	c.A1109T	p.X370L	AAAGATTATGAAG	.	49	18	52	1	.	2	0	2	0	0	2
MEAF6	64769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	37979141	37979141	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MEAF6-90	NM_022756	exon3	c.91-2A>G	.	GTTTCCTGAGAGA	.	129	24	144	0	.	0	0	0	0	0	5
KCNT2	343450	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	196300332	196300332	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNT2-159	NM_198503	exon18	c.A2057G	p.H686R	AGGAGATGACAAA	.	318	27	253	0	.	0	0	0	0	0	3
MGEA5	10724	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	103558728	103558728	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MGEA5-93	NM_012215	exon9	c.A1680C	p.L560F	AGCAAGTAACTGC	.	95	6	109	0	.	0	0	0	0	0	3
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	108434909	108434909	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SORCS1-153	NM_001206572	exon14	c.G1838A	p.S613N	TCAAAACTCAACC	.	62	5	53	0	.	0	0	0	0	0	3
AFAP1L2	84632	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	116057115	116057115	+	Missense_Mutation	SNP	C	C	T	rs145837129	unknown	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AFAP1L2-136	NM_032550	exon17	c.G2171A	p.R724Q	TCGCCCCGGCACT	.	69	7	64	0	C|1.000;T|0.000	0	0	0	0	0	3
RAD9A	5883	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	67161249	67161249	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAD9A-227	NM_004584	exon5	c.G437A	p.R146H	TGCTCCGCGCCCC	.	122	9	78	0	.	0	0	0	0	0	3
ZFP36L1	677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	69256542	69256542	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFP36L1-91	NM_001244701	exon3	c.C932G	p.T311S	GGCAGGGTAGGTG	.	72	11	63	0	.	0	0	0	0	0	4
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	21233524	21233524	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	APOB-175	NM_000384	exon26	c.A6216T	p.P2072P	AAAAAATGGGAGG	.	79	7	84	0	.	0	0	0	0	0	3
THNSL2	55258	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	88485425	88485425	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	THNSL2-91	NM_018271	exon8	c.G1238T	p.R413L	CTCCCCGGTGCTG	.	187	15	158	0	.	0	0	0	0	0	3
KIAA1715	80856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	176856974	176856974	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1715-93	NM_030650	exon4	c.T242G	p.F81C	AAAGCAAAAAATG	.	228	55	218	0	.	0	0	0	0	0	5
RBPJL	11317	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	43943206	43943206	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBPJL-227	NM_014276	exon9	c.1020+1G>C	.	TTTCAGGTAAGAA	.	118	10	106	0	.	0	0	0	0	0	3
KIAA2018	205717	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	113377864	113377864	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA2018-93	NM_001009899	exon7	c.T2665C	p.S889P	GGCTGGACTTTTC	.	69	8	93	1	.	0	0	0	0	0	3
NLGN1	22871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	173322702	173322702	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLGN1-231	NM_014932	exon3	c.C314A	p.S105X	CCTGGTCAGATAT	.	135	16	102	0	.	0	0	0	0	0	4
LPA	4018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	161015130	161015130	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LPA-74	NM_005577	exon23	c.C3489T	p.P1163P	GACCCCGGGGCTT	.	123	18	118	0	.	0	0	0	0	0	4
UBN2	254048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	138958801	138958801	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBN2-70	NM_173569	exon11	c.A1954G	p.K652E	TGGCCTAAGGGCT	.	76	10	71	0	.	0	0	0	0	0	4
KIF27	55582	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	86504155	86504155	+	Missense_Mutation	SNP	G	G	A	rs150984973	unknown	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF27-523	NM_017576	exon7	c.C1823T	p.P608L	ATAGGCGGACTTG	.	146	14	124	1	G|1.000;A|0.000	0	0	0	0	0	3
CDX4	1046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	72674420	72674420	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDX4-130	NM_005193	exon3	c.G854T	p.X285L	CCGAATGAAAGAA	.	95	10	110	0	.	0	0	0	0	0	4
ZP4	57829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	238048868	238048868	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZP4-93	NM_021186	exon8	c.G983A	p.G328D	TAAGAGCCATAGT	.	161	27	160	0	.	0	0	0	0	0	5
SLCO1A2	6579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	21445134	21445134	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLCO1A2-157	NM_134431	exon13	c.C1574A	p.S525Y	GCCAAAGAATAAA	.	51	16	42	0	.	0	0	0	0	0	5
HNRNPA1	3178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54676958	54676958	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HNRNPA1-93	NM_031157	exon8	c.G847A	p.G283R	TATGGCGGGAGTG	.	97	36	73	0	.	26	17	9	0	0	5
HAGH	3029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1872357	1872357	+	Missense_Mutation	SNP	G	G	T	rs115850237	unknown;alternate_allele	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HAGH-91	NM_005326	exon3	c.C258A	p.D86E	CGCCGCGTCCACG	.	38	10	38	0	G|1.000;A|0.000	0	0	0	0	0	4
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	21042562	21042562	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH3-167	NM_017539	exon37	c.C5244G	p.P1748P	AGCCTTGGGGTTG	.	112	20	99	0	.	0	0	0	0	0	5
FHOD1	29109	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	16	67268118	67268118	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FHOD1-221	NM_013241	exon13	c.C1488G	p.P496P	GCTCTGGGGTGTT	.	15	8	11	0	.	6	6	0	0	0	3
CD300LG	146894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	41930365	41930365	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CD300LG-90	NM_145273	exon3	c.C465T	p.T155T	GCAAACCCAGCCC	.	79	15	100	0	.	0	0	0	0	0	4
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9068139	9068139	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUC16-566	NM_024690	exon3	c.G19307T	p.G6436V	GTCAGGCCAGCAA	.	225	59	199	1	.	0	0	0	0	0	5
ZNF493	284443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	21607539	21607539	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF493-516	NM_001076678	exon4	c.C2078T	p.T693I	GCAAAACTTTCTA	.	71	7	64	0	.	7	3	4	0	0	4
ARHGAP33	115703	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	36275213	36275213	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGAP33-229	NM_052948	exon16	c.C1561A	p.P521T	CTCGACCCTGCAG	.	88	9	67	0	.	1	0	1	0	0	3
KIF16B	55614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	16253901	16253901	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF16B-291	NM_024704	exon26	c.G3951A	p.G1317G	GCTCTACCCCGTC	.	123	34	79	0	.	5	3	2	0	0	5
APCDD1L	164284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	57036492	57036492	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	APCDD1L-227	NM_153360	exon4	c.C860T	p.S287L	CACCCCGAGCTGA	.	170	23	38	0	.	0	0	0	0	0	4
CABLES2	81928	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	60966395	60966395	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CABLES2-91	NM_031215	exon9	c.G1206T	p.Q402H	GCGGTTCTGTTTG	.	120	20	92	1	.	11	7	4	0	0	3
DIDO1	11083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61537287	61537287	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DIDO1-96	NM_080797	exon6	c.G1540C	p.V514L	GCTTTACTGCATT	.	87	27	66	0	.	18	12	6	0	0	5
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	77526667	77526667	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ROBO2-328	NM_002942	exon3	c.C491G	p.T164S	AACCCACCATCTA	.	189	25	207	0	.	0	0	0	0	0	4
SPICE1	152185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113187717	113187717	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPICE1-70	NM_144718	exon9	c.A781G	p.R261G	GGAGTCTCTTGAC	.	103	21	73	0	.	3	2	1	0	0	5
SI	6476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	164709159	164709159	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SI-104	NM_001041	exon44	c.C5090G	p.A1697G	TTTTGAGCTGGCT	.	127	28	150	0	.	0	0	0	0	0	5
KLHL6	89857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183225850	183225850	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLHL6-93	NM_130446	exon3	c.T906A	p.N302K	CACCTCATTGCCA	.	130	21	109	0	.	0	0	0	0	0	5
TECRL	253017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	65145874	65145874	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TECRL-90	NM_001010874	exon12	c.G1008T	p.W336C	TTGTGCCCACAAA	.	46	11	43	0	.	0	0	0	0	0	4
SLC4A4	8671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	72319242	72319242	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC4A4-95	NM_001098484	exon12	c.G1353T	p.K451N	CATAAAGAGGAAA	.	59	24	57	0	.	0	0	0	0	0	5
FHDC1	85462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	153889150	153889150	+	Silent	SNP	G	G	A	rs146044034	unknown	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FHDC1-136	NM_033393	exon9	c.G1119A	p.T373T	GAACACGGAGGCA	.	97	24	68	0	G|1.000;A|0.000	0	0	0	0	0	4
SPINK5	11005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	147480929	147480929	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPINK5-138	NM_001127699	exon14	c.A1232G	p.E411G	CAGAAGAAGAAGA	.	233	35	164	0	.	0	0	0	0	0	4
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51695775	51695775	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKHD1-603	NM_170724	exon52	c.C8186G	p.A2729G	TCAGGGGCAGAGG	.	38	25	47	0	.	0	0	0	0	0	5
GRID2IP	392862	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	7	6590955	6590955	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145118	exon1	c.C113T	p.A38V	GCATGCGCGCTGC	.	64	24	12	0	.	0	0	0	0	0	3
BBS9	27241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	33388714	33388714	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BBS9-230	NM_014451	exon13	c.C1364A	p.A455D	AAAAAGCCAAATT	.	109	21	94	0	.	0	0	0	0	0	4
POLRMT	5442	broad.mit.edu	37	19	629898	629898	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POLRMT-92	NM_005035	exon3	c.C464T	p.A155V	GTCAGCGCCTTGA	.	82	13	88	1	.	9	4	5	0	0	1
HCLS1	3059	hgsc.bcm.edu;ucsc.edu	37	3	121351315	121351315	+	Silent	SNP	G	G	A	rs80289672	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HCLS1-90	NM_005335	exon12	c.C1104T	p.P368P	AGGCTCGGGCTCA	.	42	7	36	0	G|0.936;A|0.064	228	133	95	0	0	2
CYTB	0	bcgsc.ca	37	MT	15431	15431	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361789	exon1	c.G685A	p.A229T	AAAGACGCCCTCG	.	81	73	7	0	.	18141	407	17345	331	58	1
NUDT10	170685	broad.mit.edu	37	X	51076024	51076024	+	Silent	SNP	G	G	A	rs2801626	unknown	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NUDT10-90	NM_153183	exon2	c.G207A	p.E69E	CGAAGAGGCGGGA	.	129	6	72	0	.	4	1	3	0	0	1
ALOX5	240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	45938628	45938628	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALOX5-228	NM_000698	exon10	c.G1415T	p.R472L	TCTACCGGGACGA	.	299	126	140	0	.	3	3	0	0	0	5
PCGF5	84333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	93024204	93024204	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCGF5-226	NM_001256549	exon8	c.A590G	p.N197S	TGTGCAATGGTGA	.	99	40	60	0	.	45	25	20	0	0	5
MMP8	4317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102595542	102595542	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MMP8-229	NM_002424	exon1	c.G45T	p.V15V	AATCTGCACATGG	.	99	16	166	0	.	0	0	0	0	0	4
GRIN2B	2904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	13716624	13716624	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRIN2B-231	NM_000834	exon13	c.C3548T	p.T1183M	TCGCCCGTCCCGT	.	107	47	76	0	.	0	0	0	0	0	5
OR6C2	341416	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55846284	55846284	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR6C2-70	NM_054105	exon1	c.C287G	p.A96G	CTTGTGCCAGTCA	.	78	27	66	1	.	0	0	0	0	0	4
TAOK3	51347	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	118619354	118619354	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAOK3-933	NM_016281	exon15	c.G1388A	p.G463D	TTATAACCTGACA	.	237	42	106	1	.	49	42	7	0	0	4
LRRC43	254050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122684857	122684857	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC43-135	NM_001098519	exon8	c.G1471A	p.V491M	ACCACCGTGACCA	.	193	62	86	0	.	0	0	0	0	0	5
DGKH	160851	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	42761266	42761289	+	Frame_Shift_Del	DEL	TGATGCCGTGGCCAGTAAAGTAAG	TGATGCCGTGGCCAGTAAAGTAAG	-	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	TGATGCCGTGGCCAGTAAAGTAAG	TGATGCCGTGGCCAGTAAAGTAAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DGKH-652	NM_001204504	exon15	c.1620_1638del	p.540_546del	TGTAGCTGATGCC	.	35	5	142	0	.	0	0	0	0	0	3
COG3	83548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	46050394	46050394	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COG3-154	NM_031431	exon2	c.C233T	p.S78L	TGACTTCAGTAGT	.	43	28	77	0	.	8	0	8	0	0	5
C15orf55	256646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34648579	34648579	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C15orf55-206	NM_175741	exon7	c.G2286T	p.L762L	GGGACTGGGCTCC	.	151	65	104	0	.	0	0	0	0	0	5
CHRNA3	1136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	78894294	78894294	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHRNA3-515	NM_000743	exon5	c.C690A	p.D230E	TGTGATGTCGGGG	.	267	93	194	0	.	3	3	0	0	0	5
C16orf89	146556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	5115841	5115841	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C16orf89-92	NM_001098514	exon1	c.G69A	p.L23L	CCCAGGCAGTGAG	.	250	100	135	0	.	0	0	0	0	0	5
ABCC6	368	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	16256886	16256886	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCC6-93	NM_001171	exon24	c.G3470T	p.S1157I	CTCTGGCTTTCAT	.	177	76	105	1	.	1	1	0	0	0	4
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	21061229	21061229	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH3-167	NM_017539	exon31	c.4347+2T>A	.	TTGCTTACCTGCT	.	95	39	36	0	.	0	0	0	0	0	4
FBRS	64319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30677859	30677859	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBRS-23	NM_001105079	exon6	c.G240C	p.L80F	ACCTTTGAGGGTG	.	173	57	89	0	.	4	2	2	0	0	5
LPPR3	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	814975	814975	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001270366	exon5	c.C510T	p.Y170Y	GAGAGTGTAGTTG	.	248	100	123	1	.	0	0	0	0	0	4
OR7E24	26648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9362064	9362064	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR7E24-47	NM_001079935	exon1	c.C345A	p.C115X	AGGCTGCCTGACT	.	76	34	32	0	.	0	0	0	0	0	5
SLC5A5	6528	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	17983255	17983255	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC5A5-93	NM_000453	exon1	c.A127G	p.S43G	CAGCGCAGCGCTG	.	31	12	11	0	.	0	0	0	0	0	3
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42855429	42855429	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MEGF8-23	NM_001271938	exon16	c.G2798A	p.R933Q	GCCGGCGGGGCCG	.	112	52	30	0	.	6	3	3	0	0	5
TMEM247	388946	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145051	exon2	c.C382G	p.Q128E	CAGCGGCAGCGGC	.	283	35	176	0	G|1.000;|0.000	0	0	0	0	0	3
ACVR2B	93	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38519421	38519421	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACVR2B-942	NM_001106	exon3	c.C330T	p.N110N	CTGCAACGAACGC	.	215	175	225	0	.	1	0	1	0	0	5
OR5H2	79310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	98001912	98001912	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR5H2-71	NM_001005482	exon1	c.C181A	p.H61N	CAACTTCACATCC	.	162	120	181	0	.	0	0	0	0	0	5
KIAA1211	57482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	57181586	57181586	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1211-70	NM_020722	exon8	c.C1918T	p.R640X	CCTCCCCGAGGCC	.	80	42	12	0	.	0	0	0	0	0	4
KIF3A	11127	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	132069983	132069983	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF3A-91	NM_007054	exon2	c.C194A	p.T65N	AAAACAGTATCAA	.	279	74	159	2	.	20	16	4	0	0	3
PRPS1L1	221823	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	18066907	18066907	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRPS1L1-1	NM_175886	exon1	c.A499T	p.I167F	AGACAATAATGCA	.	260	86	166	1	.	0	0	0	0	0	4
NPC1L1	29881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44560705	44560705	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NPC1L1-94	NM_001101648	exon13	c.G2966C	p.C989S	TTTAGGCAGTTCA	.	121	51	71	0	.	1	1	0	0	0	5
C7orf72	100130988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	50136067	50136067	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C7orf72-23	NM_001161834	exon1	c.C386T	p.T129I	TACCAACCCTAGT	.	194	98	117	0	.	0	0	0	0	0	5
AKAP9	10142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	91646396	91646396	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AKAP9-755	NM_005751	exon12	c.C3817A	p.L1273I	TTGGTACTTCAAA	.	237	78	155	0	.	8	4	4	0	0	5
DBC1	1620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	121929775	121929775	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DBC1-582	NM_014618	exon8	c.C1873A	p.L625I	TAGGTAGCCGAGT	.	346	294	257	1	.	1	0	1	0	0	4
PCDH11X	27328	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	91132451	91132451	+	Silent	SNP	C	C	A	rs2563383	unknown;alternate_allele	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH11X-193	NM_001168363	exon2	c.C1212A	p.I404I	TGAAATCCCTTTC	.	272	242	243	2	T|1.000;|0.000	0	0	0	0	0	3
CYTB	0	broad.mit.edu	37	MT	15172	15172	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361789	exon1	c.G426A	p.G142G	CTGAGGGGCCACA	.	55	20	13	0	.	21376	12780	8573	12	11	1
ANKRD35	148741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145560086	145560086	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD35-95	NM_144698	exon8	c.T572C	p.I191T	CTTTGATCCTGGC	.	182	81	273	0	.	0	0	0	0	0	5
CDC73	79577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	193119482	193119482	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDC73-1009	NM_024529	exon9	c.T877G	p.Y293D	AACAGATACGATC	.	55	25	89	0	.	2	0	2	0	0	5
JAKMIP3	282973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	133951636	133951636	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	JAKMIP3-23	NM_001105521	exon8	c.T1298A	p.L433Q	ACAAGCTGTTAAG	.	95	18	103	0	.	0	0	0	0	0	4
C2CD3	26005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73829294	73829294	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C2CD3-75	NM_015531	exon9	c.G1499C	p.R500T	GCTGACCTCTTCT	.	133	27	102	0	.	0	0	0	0	0	5
C2CD3	26005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73829313	73829313	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C2CD3-75	NM_015531	exon9	c.G1480A	p.D494N	TATGATCACTTGA	.	141	32	116	0	.	0	0	0	0	0	5
PDZRN4	29951	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	41966628	41966628	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDZRN4-296	NM_001164595	exon10	c.A2047G	p.I683V	CAGAATATCATGC	.	244	61	169	2	.	0	0	0	0	0	3
AKAP11	11215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	42874405	42874405	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AKAP11-227	NM_016248	exon8	c.A1523G	p.H508R	CCCACCATACTAA	.	75	20	51	0	.	0	0	0	0	0	5
CYSLTR2	57105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	49281360	49281360	+	Missense_Mutation	SNP	G	G	A	rs201503697	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CYSLTR2-278	NM_020377	exon1	c.G407A	p.R136H	TTGTGCGTTTCCT	.	116	32	99	0	.	0	0	0	0	0	4
KLHL28	54813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45403706	45403706	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLHL28-91	NM_017658	exon3	c.A955G	p.I319V	GAGGAATGTTTAG	.	132	47	100	0	.	1	1	0	0	0	5
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45639809	45639809	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FANCM-569	NM_020937	exon12	c.C2020A	p.L674I	AGTAGCCTAAAGA	.	106	34	98	0	.	0	0	0	0	0	5
ATG2B	55102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	96800204	96800204	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATG2B-93	NM_018036	exon8	c.C1028G	p.S343C	TTGCTAGAATTTT	.	41	15	19	0	.	0	0	0	0	0	5
TMC5	79838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19492710	19492710	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMC5-91	NM_001105249	exon15	c.G2286C	p.L762L	GCAACTGATCACA	.	248	50	210	0	.	0	0	0	0	0	5
POU2F2	5452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42603760	42603760	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POU2F2-227	NM_002698	exon7	c.G420A	p.P140P	TGGTGTCGGTAGC	.	166	33	127	0	.	0	0	0	0	0	5
ZNF226	7769	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44680489	44680489	+	Silent	SNP	G	G	C	rs2178342	byfrequency;alternate_allele	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001032372	exon6	c.G1074C	p.T358T	CCACACGGCAGAG	.	219	54	180	1	G|0.865;A|0.135	9	6	3	0	0	3
KCNS1	3787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	43727858	43727858	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNS1-90	NM_002251	exon3	c.G20A	p.R7Q	GTTCCCCGGACCA	.	110	19	102	0	.	0	0	0	0	0	4
SYCP2	10388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	58441568	58441568	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SYCP2-525	NM_014258	exon39	c.A4202C	p.H1401P	CTTTGATGATTCA	.	42	9	38	0	.	1	1	0	0	0	4
SMC4	10051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	160148837	160148837	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMC4-291	NM_005496	exon19	c.C2958G	p.I986M	AGAGATCCAGAAA	.	156	48	114	0	.	19	17	2	0	0	5
RGS12	6002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	3388163	3388163	+	Silent	SNP	C	C	T	rs147432997	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RGS12-226	NM_002926	exon4	c.C2019T	p.G673G	TGATGGCGGTAAG	.	54	14	36	0	C|0.999;T|0.001	0	0	0	0	0	4
ATP8A1	10396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42466787	42466787	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP8A1-92	NM_006095	exon27	c.C2539T	p.H847Y	CACCATGAATCAT	.	152	37	127	0	.	1	1	0	0	0	5
HERC3	8916	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	89589214	89589214	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HERC3-660	NM_014606	exon14	c.A1615T	p.N539Y	GATACAAACCCCA	.	51	7	52	0	.	2	2	0	0	0	3
TLL1	7092	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	166981201	166981201	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TLL1-158	NM_012464	exon15	c.C1868A	p.T623N	TTCTTACCAAACT	.	32	6	36	0	.	0	0	0	0	0	3
GALNTL6	442117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	173961210	173961210	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GALNTL6-137	NM_001034845	exon13	c.A1765G	p.M589V	ATTAATATGACTG	.	55	14	50	0	.	0	0	0	0	0	5
TENM3	55714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	183609360	183609360	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001080477	exon11	c.G2077C	p.G693R	TGCATGGGGGGGA	.	39	17	50	0	.	0	0	0	0	0	5
TENM3	55714	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	183710523	183710523	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001080477	exon24	c.G5582A	p.S1861N	CATGGAGTTACAC	.	266	66	245	1	.	0	0	0	0	0	4
SNX18	112574	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	53839018	53839018	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SNX18-226	NM_001102575	exon2	c.C1631A	p.T544N	CTCTTACCAAAGT	.	209	64	129	1	.	0	0	0	0	0	4
FAM172A	83989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	93111872	93111872	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM172A-90	NM_032042	exon10	c.C1101T	p.V367V	TGCTGAGACCCGG	.	428	64	238	0	.	0	0	0	0	0	5
TMEM30A	55754	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	75968594	75968594	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM30A-90	NM_018247	exon6	c.C794T	p.A265V	GGTAATGCTGCAG	.	129	9	126	0	.	3	3	0	0	0	3
MRPL32	64983	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	42971992	42971992	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MRPL32-90	NM_031903	exon1	c.C7T	p.L3L	ATGGCGCTGGCCA	.	110	24	86	0	.	23	17	6	0	0	4
CADPS2	93664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	122056123	122056123	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CADPS2-94	NM_001167940	exon19	c.C2593G	p.H865D	CTGCATGATGCTC	.	59	12	46	0	.	0	0	0	0	0	4
IQUB	154865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	123105042	123105042	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IQUB-156	NM_178827	exon10	c.C1603T	p.Q535X	TTTCCTGAGTTAG	.	68	12	57	0	.	0	0	0	0	0	4
COL14A1	7373	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	121290694	121290694	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL14A1-543	NM_021110	exon28	c.C3358T	p.R1120X	TATGTTCGAGATA	.	241	44	163	2	.	0	0	0	0	0	4
NTRK2	4915	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	87570307	87570307	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NTRK2-1404	NM_006180	exon19	c.C2047G	p.L683V	GTCTACCTGGCGT	.	130	30	108	1	.	0	0	0	0	0	4
TAB3	257397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	30873289	30873289	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAB3-131	NM_152787	exon6	c.A493G	p.T165A	TTCCTGTTTGCAT	.	226	101	236	0	.	0	0	0	0	0	5
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	31792220	31792220	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DMD-265	NM_004006	exon51	c.T7399C	p.L2467L	CCTCCAACATCAA	.	135	13	96	0	.	0	0	0	0	0	4
CCDC22	28952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49099775	49099775	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC22-130	NM_014008	exon6	c.C561T	p.P187P	GAGTCCCCTGCTG	.	157	75	144	0	.	20	12	8	0	0	5
NFKB2	4791	broad.mit.edu	37	10	104160223	104160223	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NFKB2-522	NM_001077494	exon16	c.G1773T	p.Q591H	GCCCCAGCTGTTG	.	79	6	75	1	.	59	53	6	0	0	1
ACTN4	81	ucsc.edu;bcgsc.ca	37	19	39214253	39214253	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACTN4-90	NM_004924	exon13	c.1443-1G>T	.	CCCGCAGCGAGCT	.	560	135	440	2	.	15	0	15	0	0	2
EPB41	2035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	29424397	29424397	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPB41-91	NM_001166005	exon17	c.G2263A	p.V755I	AAAGACGTCCCTA	.	126	67	194	0	.	16	5	11	0	0	5
HOOK1	51361	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	60299091	60299091	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HOOK1-154	NM_015888	exon5	c.G288C	p.Q96H	GCAGCAGATTTCA	.	81	6	93	0	.	3	3	0	0	0	3
WLS	79971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	68624824	68624824	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WLS-90	NM_024911	exon3	c.C486T	p.C162C	GAAGGTGCATTTG	.	124	58	176	0	.	145	56	89	0	0	5
FLG2	388698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152323852	152323852	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FLG2-151	NM_001014342	exon3	c.G6410C	p.G2137A	GCAGATCCTGACT	.	405	101	478	0	.	0	0	0	0	0	5
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186147583	186147583	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HMCN1-113	NM_031935	exon104	c.G15979C	p.A5327P	CCTTGTGCACATC	.	190	95	187	0	.	1	1	0	0	0	5
PRELP	5549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203452909	203452909	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRELP-516	NM_201348	exon2	c.C597T	p.L199L	GCTGCTCCTGGAT	.	89	41	89	0	.	2	2	0	0	0	5
FGF19	9965	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	69514323	69514323	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FGF19-658	NM_005117	exon3	c.T358G	p.C120G	AAGCACAGTCTTC	.	114	11	103	0	.	0	0	0	0	0	3
DLG2	1740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	84245704	84245704	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DLG2-96	NM_001142699	exon7	c.G428T	p.G143V	TCTGGGCCTCTTA	.	210	38	192	0	.	0	0	0	0	0	5
MLL	4297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118368752	118368752	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLL-1255	NM_001197104	exon21	c.G5766C	p.K1922N	ACTAAAGAATGTG	.	162	33	153	0	.	1	1	0	0	0	5
PLEKHG6	55200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6426579	6426579	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLEKHG6-295	NM_001144856	exon8	c.G867A	p.Q289Q	CGTGCAGGTGGGA	.	118	30	104	1	.	0	0	0	0	0	3
PLEKHG6	55200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6426809	6426809	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLEKHG6-295	NM_001144856	exon9	c.G964A	p.A322T	CTCCATGCTGTGC	.	94	19	61	0	.	0	0	0	0	0	5
PLEKHG6	55200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6427086	6427086	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLEKHG6-295	NM_001144856	exon10	c.G1081A	p.E361K	GAGCAAGAGAGCT	.	358	85	269	2	.	0	0	0	0	0	3
PLEKHG6	55200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6427101	6427101	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLEKHG6-295	NM_001144856	exon10	c.G1096A	p.A366T	GCGGCTGCAGCAC	.	343	84	279	2	.	0	0	0	0	0	3
PLEKHG6	55200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6427146	6427146	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLEKHG6-295	NM_001144856	exon10	c.G1141A	p.D381N	CCCAGTGATGAGG	.	283	68	266	1	.	0	0	0	0	0	3
SSPN	8082	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	26377283	26377283	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SSPN-90	NM_005086	exon2	c.G337A	p.E113K	GTTGACGAACGGA	.	350	62	196	1	.	5	2	3	0	0	4
KIAA1551	55196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	32135056	32135056	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_018169	exon4	c.A1167G	p.A389A	TGTTGCAAAAGAA	.	255	111	128	0	.	3	3	0	0	0	5
CORO1C	23603	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	109055859	109055862	+	Frame_Shift_Del	DEL	TCTT	TCTT	-	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	TCTT	TCTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CORO1C-228	NM_014325	exon4	c.391_394del	p.131_132del	CGACTCTCTTTGA	.	155	32	183	0	.	0	0	0	0	0	3
C12orf65	91574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123741386	123741386	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C12orf65-90	NM_001194995	exon3	c.G309T	p.Q103H	TGATCAGAACAGA	.	206	30	134	0	.	44	35	9	0	0	5
CEP128	145508	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	81259323	81259323	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CEP128-91	NM_152446	exon13	c.G1341T	p.L447L	GCGAGTCAGCTCT	.	157	29	203	1	.	0	0	0	0	0	4
DYNC1H1	1778	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102463457	102463457	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DYNC1H1-98	NM_001376	exon16	c.A3650T	p.E1217V	AGGGAGAGTGGGG	.	214	55	280	2	.	10	10	0	0	0	3
GOLGA6D	653643	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	75586797	75586797	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145224	exon18	c.C2063A	p.P688H	TGTCTCCTGTCAT	.	327	58	206	0	.	0	0	0	0	0	4
RHBDF1	64285	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	108431	108431	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RHBDF1-92	NM_022450	exon18	c.C2476T	p.P826S	GGACAGGATAGAC	.	154	36	289	1	.	36	22	14	0	0	4
CALB2	794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	71416647	71416647	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CALB2-90	NM_007088	exon5	c.G368C	p.R123T	CAGACAGGAGTGG	.	216	81	318	0	.	0	0	0	0	0	5
ABR	29	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	970425	970425	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABR-91	NM_021962	exon10	c.A1074G	p.P358P	GGGGGATGGAAAC	.	19	8	47	0	.	0	0	0	0	0	4
ARRB2	409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4619770	4619770	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARRB2-522	NM_001257329	exon5	c.C224T	p.S75F	GCTTGTCCTTCCG	.	81	38	99	0	.	7	7	0	0	0	5
UTP18	51096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	49354664	49354664	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UTP18-90	NM_016001	exon7	c.A1011T	p.R337S	AGTGAGAGGTAAG	.	81	16	75	0	.	3	0	3	0	0	5
PRKAR1A	5573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	66519041	66519041	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRKAR1A-1141	NM_001276290	exon2	c.G322T	p.E108X	ACGGAGGAAGATG	.	58	36	72	0	.	62	59	3	0	0	5
DSC2	1824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	28672247	28672247	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DSC2-517	NM_024422	exon3	c.C171A	p.C57X	TGTAAAGCACTCT	.	136	61	122	0	.	0	0	0	0	0	5
CREB3L3	84699	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4171861	4171861	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CREB3L3-92	NM_032607	exon10	c.T1281A	p.N427K	GAGGAATGCAACA	.	187	26	144	1	.	0	0	0	0	0	3
PRX	57716	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	40909675	40909676	+	Frame_Shift_Del	DEL	CC	CC	-	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRX-92	NM_181882	exon5	c.121_122del	p.41_41del	AAGATTCCCTCTT	.	114	42	140	0	.	0	0	0	0	0	3
PLA2G4C	8605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48601409	48601409	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLA2G4C-92	NM_001159322	exon6	c.G585A	p.E195E	TCTTGCCTCCTGC	.	155	43	155	0	.	0	0	0	0	0	5
TRAPPC12	51112	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	3392328	3392328	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_016030	exon2	c.C934T	p.P312S	TGGCTTCCCGGCG	.	357	122	104	1	.	33	18	15	0	0	3
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	21226106	21226106	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	APOB-175	NM_000384	exon29	c.C12188A	p.A4063D	CCAGAAGCTGCCT	.	91	16	79	0	.	0	0	0	0	0	4
CRIM1	51232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	36764534	36764534	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRIM1-118	NM_016441	exon14	c.G2468C	p.G823A	TCAGTGGGAAGGC	.	95	50	147	0	.	13	11	2	0	0	5
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84908502	84908502	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH6-69	NM_001370	exon42	c.A6766G	p.S2256G	TTCCTGAGTGACT	.	105	31	95	0	.	0	0	0	0	0	5
NCKAP5	344148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	133540078	133540078	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_207363	exon14	c.A4306G	p.T1436A	CAAAAGTGCTTGG	.	94	10	92	0	.	0	0	0	0	0	4
GTDC1	79712	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	144764748	144764748	+	Splice_Site	SNP	C	C	A	rs199607709	unknown;alternate_allele	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GTDC1-91	NM_001164629	exon8	c.875+1G>T	.	GACTTACCACCTG	.	130	61	122	1	.	0	0	0	0	0	3
KIF1A	547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241728660	241728660	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF1A-91	NM_001244008	exon3	c.A176T	p.H59L	GAGGTGTGCGACC	.	129	28	97	0	.	0	0	0	0	0	5
RNF24	11237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	3954983	3954983	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RNF24-226	NM_001134338	exon2	c.G52T	p.G18W	ACCCCCCTAAGAC	.	49	10	56	0	.	0	0	0	0	0	4
TPX2	22974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	30388862	30388862	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TPX2-290	NM_012112	exon18	c.C2223T	p.F741F	CAAATTCTCCACT	.	186	45	225	0	.	43	32	11	0	0	5
PABPC1L	80336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43550237	43550237	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PABPC1L-47	NM_001124756	exon6	c.C741T	p.A247A	CCAGGCCGTGGTC	.	143	55	157	0	.	0	0	0	0	0	5
MYT1	4661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62839773	62839773	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYT1-704	NM_004535	exon7	c.G1224T	p.L408L	CCAGCTGGGCCTG	.	165	39	204	0	.	0	0	0	0	0	5
KRTAP13-1	140258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	31768658	31768658	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRTAP13-1-91	NM_181599	exon1	c.C254A	p.T85N	CCAGAACCTCCTT	.	129	32	192	0	.	0	0	0	0	0	5
DNMT3L	29947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45666395	45666395	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNMT3L-228	NM_013369	exon12	c.A1049G	p.N350S	TGCTTGTTCTGGG	.	135	35	116	0	.	0	0	0	0	0	5
LDOC1L	84247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	44893294	44893294	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LDOC1L-69	NM_032287	exon2	c.C143T	p.A48V	TTCTCCGCCCGCA	.	35	31	85	0	.	6	0	5	1	0	5
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTNNB1-24361	NM_001098209	exon3	c.T133C	p.S45P	GCTCCTTCTCTGA	.	155	81	246	0	.	362	127	235	0	0	5
VIPR1	7433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42577654	42577654	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VIPR1-91	NM_004624	exon13	c.C1255T	p.R419W	AAATACCGGCACC	.	241	74	174	0	.	0	0	0	0	0	5
TKT	7086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	53269001	53269001	+	Silent	SNP	G	G	A	rs140465934	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TKT-92	NM_001258028	exon6	c.C651T	p.F217F	ATACCCGAAGGCC	.	64	28	90	0	G|1.000;A|0.000	0	0	0	0	0	5
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142286929	142286929	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATR-1139	NM_001184	exon2	c.C127T	p.R43W	GTATCCGGTCAAT	.	130	68	219	0	.	2	1	1	0	0	5
TMEM41A	90407	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	185212464	185212464	+	Missense_Mutation	SNP	G	G	A	rs151156113	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM41A-90	NM_080652	exon4	c.C521T	p.S174L	GGGGCCGAGAGGT	.	90	6	136	0	G|0.999;A|0.000	85	77	8	0	0	3
AMTN	401138	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	71394907	71394907	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AMTN-153	NM_212557	exon7	c.A337G	p.I113V	GGCACTATCCTAA	.	581	363	318	2	.	0	0	0	0	0	3
MEPE	56955	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	88767172	88767172	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MEPE-93	NM_020203	exon4	c.A1152T	p.K384N	AAGAAAAGAAGGC	.	614	80	290	1	.	0	0	0	0	0	3
CYP2U1	113612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	108853207	108853216	+	Frame_Shift_Del	DEL	GCGCGAGGCG	GCGCGAGGCG	-	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	GCGCGAGGCG	GCGCGAGGCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CYP2U1-90	NM_183075	exon1	c.408_417del	p.136_139del	CAGCGTGCGCGAG	.	161	29	202	0	.	0	0	0	0	0	3
FAM160A1	729830	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	152498948	152498948	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001109977	exon5	c.C452T	p.S151L	CTTGTTCAGGAAC	.	124	44	193	1	.	0	0	0	0	0	4
GUCY1A3	2982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	156618116	156618116	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GUCY1A3-93	NM_001130687	exon3	c.G97A	p.A33T	GAGGAGGCAGCAG	.	129	33	210	0	.	3	3	0	0	0	5
C6	729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	41143080	41143080	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C6-95	NM_001115131	exon18	c.G2652T	p.L884F	TGGGGGCAATAGG	.	243	35	140	0	.	0	0	0	0	0	5
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79028141	79028141	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CMYA5-77	NM_153610	exon2	c.G3553A	p.E1185K	GAACAGGAACCCA	.	351	43	182	0	.	0	0	0	0	0	5
HIST1H4B	8366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26027447	26027447	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIST1H4B-70	NM_003544	exon1	c.G34C	p.G12R	CCTTACCCAAACC	.	117	50	154	0	.	0	0	0	0	0	5
LHFPL5	222662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	35773835	35773835	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LHFPL5-91	NM_182548	exon1	c.T388G	p.C130G	AAGATCTGTGCAT	.	85	14	90	0	.	0	0	0	0	0	4
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51920447	51920447	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKHD1-603	NM_170724	exon19	c.C1774T	p.R592X	GGTGTCGAGGCTG	.	227	73	150	0	.	0	0	0	0	0	5
RIMS1	22999	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	73000415	73000415	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RIMS1-144	NM_014989	exon25	c.C3588T	p.H1196H	GGGACACGCAGCC	.	236	25	149	1	.	0	0	0	0	0	3
HECA	51696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	139498189	139498189	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HECA-90	NM_016217	exon4	c.G1579A	p.D527N	AACCTGGACTACC	.	105	32	79	0	.	12	7	5	0	0	5
TNS3	64759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47408816	47408816	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNS3-94	NM_022748	exon17	c.A1427T	p.D476V	AGAATGTCTGTCT	.	205	38	174	0	.	1	1	0	0	0	5
EPHB6	2051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	142567581	142567581	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPHB6-1489	NM_004445	exon17	c.T2469C	p.C823C	AAGTTGTTTGCTT	.	120	12	132	0	.	0	0	0	0	0	4
NOS3	4846	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	150704089	150704089	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOS3-1011	NM_000603	exon16	c.C1933G	p.L645V	GGCACCCTCAGGT	.	176	20	133	0	.	0	0	0	0	0	3
FDFT1	2222	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	11689040	11689040	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FDFT1-90	NM_004462	exon7	c.C893T	p.A298V	CCATTGCCACTTT	.	272	155	176	0	.	1112	337	773	0	2	5
MBOAT4	619373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	29996184	29996184	+	Missense_Mutation	SNP	C	C	T	rs140611326	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MBOAT4-68	NM_001100916	exon2	c.G208A	p.A70T	CCACAGCGCAGAC	.	338	72	314	0	C|1.000;T|0.000	0	0	0	0	0	4
SLC10A5	347051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	82606283	82606283	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC10A5-90	NM_001010893	exon1	c.C925G	p.L309V	AACTCAGAGGTCT	.	39	16	30	0	.	0	0	0	0	0	5
ZFPM2	23414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	106814462	106814462	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFPM2-139	NM_012082	exon8	c.C2152G	p.L718V	CCTCCACTGAAGA	.	137	67	131	0	.	1	1	0	0	0	5
RGP1	9827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35752652	35752652	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RGP1-23	NM_001080496	exon9	c.C957A	p.S319S	AGTGTCCTTGAAG	.	144	41	150	0	.	0	0	0	0	0	5
SLC28A3	64078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	86920229	86920229	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC28A3-94	NM_001199633	exon4	c.G274A	p.G92S	AGAAACCACATAC	.	89	32	106	0	.	0	0	0	0	0	5
ASPN	54829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	95233050	95233050	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASPN-514	NM_001193335	exon3	c.C288A	p.V96V	GGTTGGGACTGAG	.	98	36	85	0	.	8	8	0	0	0	5
KIAA0368	23392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	114246951	114246951	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA0368-68	NM_001080398	exon1	c.A75G	p.K25K	ATGTTCTTTTCGG	.	64	12	123	0	.	0	0	0	0	0	4
RNF183	138065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	116060043	116060043	+	Missense_Mutation	SNP	G	G	A	rs146147048	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RNF183-90	NM_145051	exon2	c.C422T	p.T141M	ATGGGCGTAGACA	.	171	33	210	0	G|0.999;A|0.000	0	0	0	0	0	4
CSF2RA	1438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	1413336	1413336	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSF2RA-42	NM_172247	exon6	c.G762T	p.Q254H	GTACCAGCTGGAC	.	693	303	702	2	.	2	2	0	0	0	4
DDX53	168400	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	23018850	23018850	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DDX53-228	NM_182699	exon1	c.G676A	p.A226T	AAAGACGCTTTTC	.	340	99	234	1	.	0	0	0	0	0	4
GPR173	54328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53106284	53106284	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR173-130	NM_018969	exon2	c.G481C	p.D161H	GTCTTTGACGTGG	.	247	49	205	0	.	0	0	0	0	0	5
CHPT1	56994	broad.mit.edu	37	12	102091784	102091784	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHPT1-90	NM_020244	exon1	c.T145G	p.Y49D	CAGCTCTACTGGA	.	17	4	24	0	.	34	23	11	0	0	1
PNKP	11284	broad.mit.edu	37	19	50370408	50370408	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PNKP-253	NM_007254	exon2	c.A54G	p.G18G	GGGCGCTCCCCCA	.	75	24	34	1	.	41	39	2	0	0	1
FBXO42	54455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16577408	16577408	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXO42-228	NM_018994	exon10	c.G1911A	p.Q637Q	CATACTCTGGTAT	.	163	92	148	0	.	14	6	8	0	0	5
OR2T10	127069	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	248756893	248756893	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2T10-69	NM_001004693	exon1	c.G177A	p.M59I	GAAGTACATGGGA	.	208	14	240	0	.	0	0	0	0	0	3
OPTN	10133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	13154589	13154589	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OPTN-70	NM_001008212	exon5	c.A506G	p.N169S	AGCTGAACTCCAG	.	104	91	109	0	.	111	0	111	0	0	5
SAP18	10284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	21715115	21715115	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SAP18-226	NM_005870	exon2	c.G220A	p.E74K	TCCAGCGAGTTGC	.	102	92	77	0	.	221	5	216	0	0	5
SLC5A5	6528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17985536	17985536	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC5A5-93	NM_000453	exon4	c.C539T	p.A180V	ACACGGCTGTGGT	.	85	72	91	0	.	0	0	0	0	0	4
FPR1	2357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52249666	52249666	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FPR1-524	NM_001193306	exon3	c.C582T	p.A194A	GGCAACGGCCACA	.	127	115	116	1	.	0	0	0	0	0	5
CNTNAP5	129684	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	125262113	125262113	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTNAP5-524	NM_130773	exon8	c.G1304A	p.R435H	CAGAACGCGTAGC	.	132	22	115	1	.	0	0	0	0	0	4
SNRPB2	6629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	16712857	16712857	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SNRPB2-153	NM_003092	exon3	c.T113C	p.V38A	ATGTGGTGGACAT	.	245	105	159	0	.	56	29	27	0	0	5
ADNP	23394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	49510967	49510967	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADNP-92	NM_015339	exon5	c.A284G	p.N95S	TGGACATTGCGGA	.	176	80	102	0	.	10	3	7	0	0	5
IGSF10	285313	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151161115	151161115	+	Missense_Mutation	SNP	C	C	T	rs145507750	unknown	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGSF10-102	NM_178822	exon5	c.G5620A	p.V1874I	AGTAAACGCTGGG	.	69	57	63	0	C|0.999;T|0.001	0	0	0	0	0	4
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79351450	79351450	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FRAS1-68	NM_001166133	exon37	c.T4848C	p.L1616L	AGGACTTCAGGTG	.	71	58	87	0	.	0	0	0	0	0	5
ENPP5	59084	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	46129455	46129455	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ENPP5-90	NM_021572	exon4	c.A1042T	p.M348L	GATGCATATCTGC	.	24	22	38	0	.	14	0	14	0	0	4
HECW1	23072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	43483926	43483943	+	In_Frame_Del	DEL	AGAGTCCTCTGAGAGCTG	AGAGTCCTCTGAGAGCTG	-	novel	unknown	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	AGAGTCCTCTGAGAGCTG	AGAGTCCTCTGAGAGCTG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HECW1-669	NM_015052	exon11	c.1155_1172del	p.385_391del	GGCACCAGAGTCC	.	89	55	147	0	.	0	0	0	0	0	3
DLC1	10395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	12957772	12957772	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DLC1-657	NM_182643	exon9	c.T2074C	p.L692L	TGATCAACCCCAG	.	179	81	70	0	.	9	6	3	0	0	5
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	139729081	139729081	+	Missense_Mutation	SNP	C	C	T	rs144653941	unknown	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL22A1-103	NM_152888	exon28	c.G2387A	p.R796Q	CCAGGTCGGCCTG	.	76	31	55	0	C|1.000;T|0.000	0	0	0	0	0	5
SAGE1	55511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134993856	134993856	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SAGE1-133	NM_018666	exon18	c.G2265A	p.M755I	TTGTATGCCACCC	.	197	177	141	0	.	0	0	0	0	0	5
GLMN	11146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92712112	92712112	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GLMN-227	NM_053274	exon19	c.C1760G	p.S587C	TCTTCAGAGGTAG	.	66	64	102	0	.	7	0	7	0	0	5
H3F3A	3020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	226252155	226252155	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	H3F3A-522	NM_002107	exon2	c.G103C	p.G35R	ACTGGAGGGGTGA	.	269	246	282	0	.	434	14	418	0	2	5
KIF20B	9585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	91518639	91518642	+	Frame_Shift_Del	DEL	AGTC	AGTC	-	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	AGTC	AGTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF20B-93	NM_016195	exon27	c.4560_4560del	p.1520_1520del	TAAAATAGTCAGT	.	110	47	126	0	.	0	0	0	0	0	3
FBXW4	6468	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	103371096	103371097	+	Frame_Shift_Del	DEL	AT	AT	-	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXW4-226	NM_022039	exon9	c.1190_1191del	p.397_397del	GGCAGCATAGAGA	.	280	133	199	0	.	0	0	0	0	0	3
NUDT22	84304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63994397	63994397	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NUDT22-90	NM_001128613	exon2	c.G273A	p.L91L	CTTCCTGGGCACC	.	79	46	62	0	.	40	17	23	0	0	5
LTBP3	4054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65314984	65314984	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LTBP3-91	NM_001130144	exon14	c.A2033T	p.N678I	GGAAAGTTGATGC	.	107	47	95	0	.	33	25	8	0	0	5
SHANK2	22941	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	70544812	70544812	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SHANK2-94	.	.	.	.	AGCTGTCATAGGA	.	188	80	160	0	.	0	0	0	0	0	4
DSCAML1	57453	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	117335893	117335893	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DSCAML1-159	NM_020693	exon17	c.C3210A	p.P1070P	CTTCTTGGGTGCC	.	65	4	77	0	.	0	0	0	0	0	3
TECTA	7007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	121028854	121028854	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TECTA-225	NM_005422	exon13	c.C4610T	p.P1537L	CGGCCCCCAACCT	.	75	65	112	0	.	0	0	0	0	0	5
BIN2	51411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51685869	51685869	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BIN2-91	NM_016293	exon10	c.A1021T	p.N341Y	GGCCATTGCAGGC	.	76	38	69	0	.	0	0	0	0	0	5
SUOX	6821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56398081	56398081	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SUOX-90	NM_000456	exon6	c.C908A	p.A303D	TGTTAGCCCAGGC	.	106	45	86	0	.	14	8	6	0	0	5
HECTD4	283450	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	112690349	112690349	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001109662	exon23	c.3029delC	p.P1010fs	AAGGAAGGGGGGG	.	33	14	24	0	.	0	0	0	0	0	3
MYCBP2	23077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	77745686	77745689	+	Frame_Shift_Del	DEL	ACAG	ACAG	-	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	ACAG	ACAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYCBP2-236	NM_015057	exon38	c.5732_5735del	p.1911_1912del	CTTACAACAGACA	.	102	43	109	0	.	0	0	0	0	0	3
IPO5	3843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	98658494	98658494	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IPO5-228	NM_002271	exon17	c.A1662G	p.P554P	TATGCCATCACTG	.	87	41	77	0	.	25	13	12	0	0	5
CTAGE5	4253	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	39771394	39771394	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTAGE5-90	NM_001247989	exon10	c.C872G	p.T291R	ACATAACGGATGA	.	273	123	207	0	.	23	15	8	0	0	4
ARID4A	5926	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	58833675	58833676	+	Frame_Shift_Del	DEL	TA	TA	-	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	TA	TA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARID4A-231	NM_002892	exon23	c.3598_3599del	p.1200_1200del	AAATATTATATGT	.	113	65	135	0	.	0	0	0	0	0	3
FLRT2	23768	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	86089505	86089505	+	Silent	SNP	C	C	A	rs35699071	unknown;alternate_allele	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FLRT2-94	NM_013231	exon2	c.C1647A	p.G549G	CGGGGGCGCGGTG	.	123	56	98	0	C|0.983;T|0.017	0	0	0	0	0	4
IFI27L2	83982	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	94594238	94594240	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IFI27L2-90	NM_032036	exon4	c.289_291del	p.97_97del	TGGGAGAGAAGAA	.	133	44	114	0	.	0	0	0	0	0	3
SNRPN	6638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	25222108	25222108	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SNRPN-469	NM_022807	exon10	c.G352T	p.V118L	GCTGGTGTGCCAA	.	43	18	41	0	.	212	212	0	0	0	5
ELL3	80237	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	44069077	44069078	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ELL3-91	NM_025165	exon1	c.22_23del	p.8_8del	CCTCTCAGAGGCT	.	59	31	43	0	.	0	0	0	0	0	3
ZNF592	9640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	85326912	85326912	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF592-96	NM_014630	exon4	c.C1006G	p.L336V	AGCCCTCTGGAGG	.	107	56	70	0	.	1	0	1	0	0	5
ERN2	10595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23706392	23706392	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ERN2-322	NM_033266	exon16	c.C1992G	p.V664V	CAGCACGACCTCG	.	169	75	117	0	.	0	0	0	0	0	5
ZNF688	146542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30582444	30582444	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF688-68	NM_145271	exon2	c.G197A	p.G66E	GGGAATCCTGGGA	.	21	7	22	0	.	11	9	2	0	0	4
OR3A1	4994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3195043	3195043	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR3A1-70	NM_002550	exon1	c.A834T	p.G278G	GAAAATTCCAACA	.	156	59	138	0	.	0	0	0	0	0	5
CNTROB	116840	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7842968	7842970	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTROB-153	NM_001037144	exon8	c.1065_1067del	p.355_356del	TGCCCTAGAAGAA	.	204	104	157	0	.	0	0	0	0	0	3
GHDC	84514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40342700	40342700	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GHDC-90	NM_001142623	exon8	c.G1230A	p.V410V	CTGCCCCACTGCC	.	99	47	79	0	.	38	16	22	0	0	5
CACNA1G	8913	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	48638951	48638951	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNA1G-67	NM_001256360	exon1	c.C131T	p.A44V	GCAGCGCGGACTC	.	37	18	20	0	.	0	0	0	0	0	3
ARID3A	1820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	964309	964309	+	Nonsense_Mutation	SNP	C	C	A	rs143790786	byfrequency;alternate_allele	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARID3A-90	NM_005224	exon5	c.C828A	p.Y276X	GCTGTACGTGCTG	.	339	108	178	0	C|0.999;T|0.001	4	3	1	0	0	5
EMR1	2015	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	6906459	6906459	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EMR1-526	NM_001256253	exon9	c.G965T	p.C322F	TCAAATGTAAGGA	.	281	19	152	0	.	0	0	0	0	0	3
OR10H2	26538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15839027	15839027	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR10H2-70	NM_013939	exon1	c.C174T	p.P58P	CACGCCCATGTAC	.	775	250	329	1	.	0	0	0	0	0	5
CCDC8	83987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46914646	46914646	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC8-93	NM_032040	exon1	c.G1422A	p.Q474Q	CTTGACCTGTTTC	.	95	48	96	0	.	0	0	0	0	0	5
ZNF582	147948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56901430	56901430	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF582-138	NM_144690	exon4	c.C172T	p.L58L	GCTCTAGGAAGGA	.	130	54	114	0	.	4	4	0	0	0	5
HADHB	3032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	26502030	26502030	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HADHB-154	NM_000183	exon9	c.A658T	p.S220C	TCCACCAGTGAGA	.	151	76	96	0	.	241	114	127	0	0	5
EHD3	30845	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	31489342	31489342	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EHD3-92	NM_014600	exon6	c.C1380A	p.G460G	GGATGGCAAGATC	.	264	111	194	1	.	0	0	0	0	0	4
VWA3B	200403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	98920228	98920228	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VWA3B-139	NM_144992	exon26	c.C3484A	p.H1162N	TGCTCTCATATAA	.	162	69	107	0	.	0	0	0	0	0	5
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	125521704	125521704	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTNAP5-524	NM_130773	exon16	c.T2510A	p.F837Y	AAGACTTCATTCG	.	51	21	47	0	.	0	0	0	0	0	5
SLC37A1	54020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43954845	43954845	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC37A1-90	NM_018964	exon5	c.C176G	p.A59G	ATGAAGCTGACGT	.	237	109	232	0	.	6	5	1	0	0	5
PLXNB2	23654	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50720456	50720456	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLXNB2-211	NM_012401	exon20	c.C3172T	p.P1058S	CAGCCGGGGACAG	.	115	48	82	1	.	99	76	23	0	0	3
CCR4	1233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	32995848	32995848	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCR4-658	NM_005508	exon2	c.C934T	p.R312C	AAATTTCGCAAGT	.	26	10	45	0	.	0	0	0	0	0	5
GRAMD1C	54762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113655144	113655144	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRAMD1C-93	NM_017577	exon14	c.A1488G	p.L496L	TGTATTAAATCAG	.	57	26	28	0	.	0	0	0	0	0	5
ILDR1	286676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121712436	121712436	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ILDR1-91	NM_001199799	exon7	c.C1160G	p.S387C	GCCCAAGACTTTG	.	78	76	121	0	.	0	0	0	0	0	5
CEP70	80321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	138219606	138219606	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CEP70-69	NM_024491	exon14	c.A1339G	p.M447V	CCAGCATAGTATC	.	51	46	94	0	.	13	0	13	0	0	5
MED12L	116931	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	150804785	150804785	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MED12L-576	NM_053002	exon1	c.72delC	p.V24fs	CGACGTCTACCCA	.	59	54	77	0	.	0	0	0	0	0	3
SLC6A18	348932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1244384	1244384	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC6A18-91	NM_182632	exon10	c.G1392A	p.G464G	GTCTGGGAACTAC	.	113	49	98	0	.	0	0	0	0	0	5
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	79030793	79030793	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CMYA5-77	NM_153610	exon2	c.G6205T	p.V2069F	TCTTCTGTCAAAA	.	82	8	56	0	.	0	0	0	0	0	4
MEF2C	4208	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	88100446	88100446	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MEF2C-704	NM_001193350	exon3	c.A227T	p.H76L	CTCTCATGCGGCT	.	316	23	243	0	.	7	6	1	0	0	3
PCDHGA6	56109	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140755561	140755561	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHGA6-67	NM_018919	exon1	c.G1911A	p.A637A	AGACGCGCTCAAG	.	290	130	50	1	.	0	0	0	0	0	3
TENM2	57451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	167645355	167645355	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001122679	exon23	c.G4432T	p.V1478F	ACTGGGGTCCTCT	.	298	149	199	0	.	0	0	0	0	0	5
KIAA1191	57179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	175774669	175774672	+	Frame_Shift_Del	DEL	TTTC	TTTC	-	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	TTTC	TTTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1191-91	NM_020444	exon9	c.849_852del	p.283_284del	TGGCTGTTTCTTT	.	61	31	48	0	.	0	0	0	0	0	3
SLC34A1	6569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	176825193	176825193	+	Missense_Mutation	SNP	C	C	T	rs147711480	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC34A1-91	NM_003052	exon13	c.C1826T	p.P609L	CACCCCCGCTGCC	.	22	13	32	0	C|0.999;T|0.001	0	0	0	0	0	4
MAK	4117	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	10784764	10784764	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAK-335	NM_005906	exon11	c.G1358A	p.G453E	TTTTCCCCTGTCG	.	134	7	219	0	.	0	0	0	0	0	3
TFEB	7942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	41652375	41652375	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TFEB-659	NM_001167827	exon9	c.C1435A	p.R479R	TGCTCCGGCGGCT	.	158	79	155	0	.	11	7	4	0	0	4
TDRD6	221400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	46657547	46657547	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TDRD6-138	NM_001168359	exon1	c.A1682G	p.D561G	AATTGGATGACAA	.	366	168	309	1	.	0	0	0	0	0	4
KIAA1009	22832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	84904675	84904675	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1009-91	NM_014895	exon10	c.T954C	p.D318D	CTTGATATCTTCC	.	147	68	107	1	.	0	0	0	0	0	3
LIN28B	389421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	105526424	105526424	+	Silent	SNP	C	C	A	rs140802515	byfrequency;alternate_allele	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LIN28B-90	NM_001004317	exon4	c.C519A	p.P173P	GCCACCCGCGAGT	.	122	60	75	0	C|0.999;T|0.001	0	0	0	0	0	5
WDR27	253769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	170033154	170033154	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDR27-69	NM_182552	exon21	c.C2112T	p.L704L	AGCTGCGAGTACG	.	91	10	98	0	.	0	0	0	0	0	4
AEBP1	165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44151812	44151812	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AEBP1-90	NM_001129	exon17	c.G2109C	p.P703P	TTTCCCGGATCTC	.	60	35	80	0	.	1	1	0	0	0	5
EGFR	1956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	55224349	55224349	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EGFR-44910	NM_005228	exon9	c.G1130A	p.R377K	CATTTAGGGGGTG	.	119	66	110	0	.	0	0	0	0	0	5
ELN	2006	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73462021	73462021	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ELN-95	NM_001081753	exon13	c.C675G	p.P225P	ACTGCCCTACACC	.	264	118	179	2	.	0	0	0	0	0	4
C7orf60	154743	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	112579732	112579732	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C7orf60-93	NM_152556	exon1	c.G74T	p.R25L	TGCTCCCGGGGCG	.	78	42	66	0	.	0	0	0	0	0	4
MCPH1	79648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	6296613	6296613	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MCPH1-229	NM_001172574	exon6	c.C576T	p.P192P	TTCCCCCACCTGT	.	38	25	22	0	.	0	0	0	0	0	5
INTS9	55756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	28654146	28654146	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	INTS9-24	NM_018250	exon9	c.C771T	p.N257N	ATCGCTGTTTTTG	.	167	59	160	0	.	9	4	5	0	0	5
VPS13B	157680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	100821724	100821724	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VPS13B-301	NM_017890	exon44	c.T8138C	p.I2713T	TCATCATCAAGGT	.	87	34	76	0	.	0	0	0	0	0	5
RASEF	158158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	85605354	85605354	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RASEF-280	NM_152573	exon16	c.G2069A	p.S690N	TTGGCACTTGTTT	.	160	38	120	0	.	0	0	0	0	0	5
ZCCHC6	79670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	88933891	88933894	+	Frame_Shift_Del	DEL	ATTA	ATTA	-	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	ATTA	ATTA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZCCHC6-92	NM_024617	exon16	c.3195_3198del	p.1065_1066del	AAGTCCATTAATT	.	258	76	138	0	.	0	0	0	0	0	3
MAGED1	9500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	51640148	51640148	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAGED1-133	NM_001005333	exon5	c.G1565T	p.R522L	AGCCCCGAGATGT	.	163	74	124	0	.	165	165	0	0	0	5
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53576374	53576374	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HUWE1-280	NM_031407	exon67	c.T9581C	p.F3194S	TCCACAAAAAGTA	.	215	113	178	0	.	14	0	14	0	0	5
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	76939349	76939349	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATRX-248	NM_000489	exon9	c.A1399T	p.K467X	CCTGTTTTCTTGA	.	58	18	42	0	.	0	0	0	0	0	5
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	148	20	13	0	C|0.960;G|0.040	34	7	27	0	0	1
CRIPAK	285464	hgsc.bcm.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRIPAK-90	NM_175918	exon1	c.T675C	p.D225D	TGCCGATGCGGAG	.	163	14	35	0	C|1.000;|0.000	32	26	6	0	0	1
SLC4A2	6522	bcgsc.ca	37	7	150772800	150772800	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC4A2-90	NM_003040	exon21	c.G3409T	p.E1137X	TTCTATGAGCGGC	.	47	24	41	2	.	47	40	7	0	0	1
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	13169	13169	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361567	exon1	c.T833C	p.L278P	TAACACTATGCTT	.	33	8	15	0	.	957	790	166	0	1	2
DHCR24	1718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	55349290	55349290	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DHCR24-91	NM_014762	exon3	c.387+1G>T	.	CTCTCACCTGTTT	.	123	10	121	0	.	0	0	0	0	0	3
ENO2	2026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7025042	7025042	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ENO2-226	NM_001975	exon2	c.G46A	p.G16R	TCCCGCGGGAACC	.	126	66	69	0	.	15	9	6	0	0	5
MGST1	4257	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	16516930	16516933	+	Frame_Shift_Del	DEL	TCTT	TCTT	-	novel	unknown	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	TCTT	TCTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MGST1-90	NM_020300	exon4	c.423_426del	p.141_142del	AGTTACTCTTTCC	.	166	58	108	0	.	0	0	0	0	0	3
GPHN	10243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	67578631	67578631	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPHN-228	NM_020806	exon15	c.T1467C	p.D489D	CCAAGATATCAGG	.	150	118	154	0	.	0	0	0	0	0	5
CCP110	9738	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	19547801	19547801	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCP110-90	NM_001199022	exon4	c.810delG	p.V270fs	TGAAGTGGCTGAC	.	178	75	108	0	.	0	0	0	0	0	3
ZMYND10	51364	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	50379278	50379278	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZMYND10-279	NM_015896	exon10	c.A1084T	p.S362C	AGGGGCTGAACAC	.	68	5	91	0	.	2	2	0	0	0	3
GABRA1	2554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	161277848	161277848	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GABRA1-93	NM_001127644	exon2	c.T32A	p.L11H	ACTGTCTTTGGGC	.	137	56	65	0	.	0	0	0	0	0	5
ZFP62	643836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180275938	180275938	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001172638	exon2	c.T2557A	p.S853T	GATTTGATCTGAT	.	194	80	135	0	.	1	1	0	0	0	5
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	72967768	72967768	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPA1-230	NM_007332	exon12	c.G1432A	p.G478S	GGTCACCTTCATT	.	557	225	345	0	.	1	0	1	0	0	4
USP26	83844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	132159761	132159761	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP26-661	NM_031907	exon1	c.G2488C	p.V830L	GGCTGACAACACT	.	34	33	46	0	.	0	0	0	0	0	5
HIRIP3	8479	broad.mit.edu	37	16	30005028	30005028	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIRIP3-90	NM_001197323	exon4	c.C403A	p.L135I	ACAGGAGCCCAAC	.	44	6	24	0	.	40	36	4	0	0	1
OGFR	11054	hgsc.bcm.edu	37	20	61444569	61444569	+	Silent	SNP	A	A	G	rs3204348	byfrequency;by1000genomes	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OGFR-68	NM_007346	exon7	c.A1602G	p.P534P	CGAGCCAGCCGAG	.	94	6	11	0	A|0.979;G|0.021	169	156	13	0	0	1
CYTB	0	broad.mit.edu	37	MT	15297	15297	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361789	exon1	c.T551C	p.I184T	ACTTCATCTTGCC	.	23	8	16	0	.	25048	12216	12824	4	4	1
DLGAP3	58512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	35365799	35365799	+	Missense_Mutation	SNP	C	C	T	rs140339373	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DLGAP3-71	NM_001080418	exon2	c.G1183A	p.G395S	AGCTGCCGCTCCG	.	147	49	98	0	C|0.999;T|0.000	4	1	3	0	0	5
THRAP3	9967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36767183	36767183	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	THRAP3-663	NM_005119	exon11	c.C2532T	p.G844G	CTGGGGCAGAGGC	.	71	23	120	0	.	22	13	9	0	0	5
C1orf141	400757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67591497	67591497	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C1orf141-91	NM_001276352	exon4	c.C171G	p.S57S	AGACGCGGATGTA	.	83	19	74	0	.	0	0	0	0	0	5
CDC7	8317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	91979529	91979529	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDC7-1125	NM_003503	exon8	c.C847A	p.Q283K	TCTGTCCAGCGCT	.	67	30	56	0	.	1	1	0	0	0	5
NBPF9	400818	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	144821919	144821919	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001037675	exon13	c.1636-2A>G	.	CTCATCAGGAATC	.	135	42	158	0	.	0	0	0	0	0	3
APOA2	336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161192812	161192812	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	APOA2-91	NM_001643	exon3	c.G81A	p.E27E	ACATGGCTCCTTT	.	145	48	100	0	.	0	0	0	0	0	5
HSD11B1	3290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	209905838	209905838	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HSD11B1-153	NM_005525	exon5	c.G575T	p.G192V	TGGATGGGTTCTT	.	212	75	174	0	.	10	5	5	0	0	5
PCNXL2	80003	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	233122169	233122169	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCNXL2-91	NM_014801	exon33	c.C5909T	p.S1970F	GAGGTGGACGTCT	.	128	8	68	0	.	0	0	0	0	0	3
ARID4B	51742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	235345012	235345012	+	Silent	SNP	A	A	C	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARID4B-228	NM_016374	exon20	c.T3222G	p.V1074V	CCCAGCAACACTA	.	88	24	104	0	.	1	1	0	0	0	5
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73466729	73466729	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH23-563	NM_022124	exon25	c.G3029A	p.R1010H	TGCCACGCGAGTT	.	600	136	325	0	.	0	0	0	0	0	5
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1093298	1093298	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUC2-90	NM_002457	exon30	c.C5117T	p.T1706M	CCACTACGGTGAC	.	139	16	117	1	.	0	0	0	0	0	3
KAT5	10524	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	65479768	65479768	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KAT5-90	NM_182710	exon1	c.G30A	p.G10G	GCCCGGGGCGGGG	.	82	32	28	0	.	2	1	1	0	0	4
CNTN5	53942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	99942557	99942557	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTN5-366	NM_001243270	exon11	c.A1420C	p.K474Q	GAGCTGAAGATTC	.	74	20	75	0	.	0	0	0	0	0	5
IAPP	3375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	21526316	21526316	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IAPP-90	NM_000415	exon2	c.A31C	p.I11L	TTTCTCATTGTGC	.	77	10	56	0	.	0	0	0	0	0	4
SCN8A	6334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52159524	52159524	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCN8A-29	NM_014191	exon16	c.G2614T	p.V872L	AATTCAGTGGGTG	.	91	18	60	0	.	0	0	0	0	0	4
PDE1B	5153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54967209	54967209	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDE1B-92	NM_000924	exon9	c.T907C	p.L303L	TTCCGATTGATGC	.	328	65	191	0	.	3	3	0	0	0	5
METTL7B	196410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56075903	56075903	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	METTL7B-514	NM_152637	exon1	c.T365A	p.F122Y	AGCGGTTTGTGGT	.	108	12	59	0	.	1	1	0	0	0	4
ATP2B1	490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	90018032	90018032	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP2B1-516	NM_001001323	exon8	c.T1272A	p.V424V	AACTGTAACTCCA	.	286	68	183	1	.	0	0	0	0	0	4
C12orf65	91574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	123741386	123741386	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C12orf65-90	NM_001194995	exon3	c.G309C	p.Q103H	TGATCAGAACAGA	.	98	10	104	0	.	32	28	3	1	0	4
POLE	5426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133249853	133249853	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POLE-233	NM_006231	exon14	c.C1370G	p.T457R	GAATACGTGGCCA	.	299	56	176	1	.	0	0	0	0	0	5
RDH12	145226	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	68191943	68191943	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RDH12-91	NM_152443	exon5	c.C315T	p.I105I	ATCTATCCGAGCC	.	166	41	144	2	.	0	0	0	0	0	3
RDH12	145226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	68191958	68191958	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RDH12-91	NM_152443	exon5	c.G330A	p.E110E	TGCTGAGGGCTTT	.	170	40	145	1	.	0	0	0	0	0	4
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105413351	105413351	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AHNAK2-47	NM_138420	exon7	c.T8437C	p.F2813L	TTTTGAACTTGCT	.	394	92	254	0	.	0	0	0	0	0	5
APBA2	321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	29346191	29346191	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	APBA2-90	NM_005503	exon3	c.A104G	p.E35G	ACATGGAGCTGCC	.	299	61	251	0	.	0	0	0	0	0	5
FMN1	342184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33358778	33358778	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FMN1-23	NM_001103184	exon1	c.G1308C	p.E436D	TAGCGACTCCTTC	.	117	32	95	0	.	0	0	0	0	0	5
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	21060895	21060895	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH3-167	NM_017539	exon31	c.4456delA	p.I1486fs	CCTCGATCCTGTT	.	96	15	85	0	.	0	0	0	0	0	3
SUPT6H	6830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27022538	27022538	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SUPT6H-93	NM_003170	exon29	c.G3943C	p.D1315H	GAGGAGGACATGA	.	194	73	237	0	.	20	10	10	0	0	5
KRT17	3872	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	39780504	39780504	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRT17-92	NM_000422	exon1	c.C258A	p.A86A	CATGGTGGCCTTC	.	371	19	385	1	.	0	0	0	0	0	3
JUP	3728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	39913762	39913762	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	JUP-479	NM_021991	exon12	c.C1951T	p.R651C	AGATGCGGAACAG	.	346	30	281	0	.	8	8	0	0	0	3
ASB16	92591	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	42255661	42255661	+	Missense_Mutation	SNP	G	G	C	rs199556388	unknown;alternate_allele	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASB16-227	NM_080863	exon5	c.G1265C	p.R422P	GCGCTCGGTTGGG	.	79	25	30	0	G|0.999;A|0.001	0	0	0	0	0	4
ACTG1	71	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79478286	79478286	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACTG1-91	NM_001614	exon4	c.G730C	p.D244H	GGCCATCGGGCAG	.	366	85	289	0	.	877	659	218	0	0	5
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	1049413	1049413	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCA7-98	NM_019112	exon18	c.C2529T	p.N843N	CCACAACGGGGCC	.	92	48	69	0	.	0	0	0	0	0	4
ZNF676	163223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	22362756	22362756	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF676-90	NM_001001411	exon3	c.C1763T	p.P588L	TTTTAGGGATTCT	.	75	7	51	0	.	0	0	0	0	0	3
CATSPERG	57828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38851407	38851407	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CATSPERG-92	NM_021185	exon16	c.G1804A	p.V602I	CAGCTGGTCAAGA	.	430	42	195	0	.	0	0	0	0	0	4
ATP1A3	478	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	42486218	42486218	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP1A3-92	NM_001256214	exon9	c.A1073C	p.N358T	AGGCAGTTCTTCC	.	546	29	305	0	.	6	5	1	0	0	3
KLK12	43849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51532678	51532678	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLK12-227	NM_019598	exon6	c.C627A	p.V209V	TTGAAGGACTCCC	.	83	39	71	0	.	0	0	0	0	0	5
ZNF765	91661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53912284	53912284	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF765-69	NM_001040185	exon4	c.A1476G	p.K492K	ACAGAAACCTTAC	.	166	33	126	0	.	0	0	0	0	0	5
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	125660522	125660522	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTNAP5-524	NM_130773	exon22	c.C3497G	p.S1166C	GCATGTCTTCCGT	.	164	77	161	0	.	0	0	0	0	0	5
CTLA4	1493	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	204735648	204735648	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTLA4-90	NM_005214	exon2	c.A449G	p.Y150C	AGATTTATGTAAT	.	181	11	105	0	.	0	0	0	0	0	3
SIRPB2	284759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1456854	1456854	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SIRPB2-226	NM_001122962	exon5	c.A987T	p.A329A	GGCTCCTGCTGGG	.	215	61	154	0	.	0	0	0	0	0	5
SLC9A8	23315	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	48494522	48494523	+	Frame_Shift_Del	DEL	AT	AT	-	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC9A8-91	NM_001260491	exon12	c.1128_1129del	p.376_377del	AGAAACATGTGTG	.	70	13	82	0	.	0	0	0	0	0	3
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18293575	18293575	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MICAL3-68	NM_015241	exon28	c.G5450A	p.R1817K	TAGGTTCTTGGCT	.	264	76	164	0	.	0	0	0	0	0	5
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18304242	18304242	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MICAL3-68	NM_015241	exon25	c.C3482T	p.P1161L	TCCTGGGGAGACC	.	59	14	57	0	.	2	0	2	0	0	5
PIWIL3	440822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	25115501	25115501	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIWIL3-93	NM_001008496	exon21	c.G2587A	p.V863M	GCCCCACGAGGTA	.	272	90	223	0	.	0	0	0	0	0	5
ODF3B	440836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50969456	50969456	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ODF3B-68	NM_001014440	exon5	c.G450C	p.L150F	CGGACCCAAGAGC	.	169	65	127	0	.	4	3	1	0	0	5
ATP2B2	491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10491213	10491213	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP2B2-95	NM_001683	exon2	c.C15G	p.T5T	GCTGTTGGTCATG	.	146	45	129	0	.	0	0	0	0	0	5
GOLGA4	2803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	37388682	37388682	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GOLGA4-93	NM_001172713	exon21	c.6518-2A>T	.	TTTGGCAGGTGGC	.	65	13	61	0	.	0	0	0	0	0	4
CCR3	1232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46307366	46307366	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCR3-660	NM_178328	exon3	c.G780C	p.R260R	CATCCGGCTCATT	.	64	14	63	0	.	0	0	0	0	0	5
FLNB	2317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	58128391	58128391	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FLNB-593	NM_001164317	exon32	c.C5289G	p.A1763A	AGAGGCCTATGTC	.	180	37	105	1	.	5	3	2	0	0	5
CLSTN2	64084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	140277631	140277631	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLSTN2-157	NM_022131	exon12	c.T1973C	p.L658P	TGACCCTCTTCCC	.	112	30	89	1	.	1	1	0	0	0	5
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	20270474	20270474	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLIT2-521	NM_004787	exon4	c.T365C	p.L122P	AGTTGCTGTTTCT	.	72	25	72	0	.	0	0	0	0	0	5
ZFP2	80108	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	178359644	178359644	+	Missense_Mutation	SNP	G	G	A	rs189472573	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFP2-93	NM_030613	exon5	c.G1330A	p.G444R	GAATGCGGAAAAG	.	64	6	63	0	G|0.999;A|0.001	2	2	0	0	0	3
TRIM38	10475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	25967015	25967015	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRIM38-226	NM_006355	exon3	c.C265G	p.Q89E	ACGGATCAAGAAA	.	290	56	172	0	.	1	0	1	0	0	5
EEF1A1	1915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	74228419	74228421	+	Frame_Shift_Del	DEL	ACC	ACC	-	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	ACC	ACC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EEF1A1-226	NM_001402	exon5	c.772_772del	p.258_258del	CAACTTACCACCA	.	186	48	173	0	.	0	0	0	0	0	3
NHSL1	57224	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	138753527	138753527	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NHSL1-68	NM_020464	exon5	c.C1967T	p.S656F	TAATTGGACCGGT	.	23	13	29	0	.	0	0	0	0	0	4
ADGB	79747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	147022084	147022084	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_024694	exon13	c.G1585T	p.V529L	CATTTTGTGCGCT	.	67	10	67	0	.	0	0	0	0	0	4
IPCEF1	26034	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	154533922	154533922	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IPCEF1-90	NM_001130699	exon10	c.T519A	p.A173A	CTGGGAAGCGTGA	.	138	12	103	0	.	0	0	0	0	0	3
CALD1	800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	134644847	134644847	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CALD1-226	NM_033138	exon12	c.A2184G	p.A728A	TGCAGCAGGCACA	.	224	43	185	0	.	4	4	0	0	0	5
MSR1	4481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	16032762	16032762	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MSR1-91	NM_138715	exon3	c.G151A	p.A51T	GTGCAGCTTTGAA	.	113	31	124	1	.	1	1	0	0	0	5
ZFAT	57623	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	135622778	135622778	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFAT-90	NM_020863	exon4	c.G569T	p.R190I	AGCTGTCTGGCCT	.	157	12	151	0	.	0	0	0	0	0	3
FBP2	8789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	97355868	97355868	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBP2-226	NM_003837	exon1	c.G141A	p.S47S	CACAGCCGAGGAG	.	310	44	156	1	.	0	0	0	0	0	5
INPP5E	56623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139324136	139324136	+	Silent	SNP	G	G	A	rs201735585	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	INPP5E-227	NM_019892	exon10	c.C1926T	p.S642S	AGAAACGGAGCAG	.	209	41	114	0	G|0.999;A|0.000	14	12	2	0	0	4
DCAF8L2	347442	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	27765556	27765556	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DCAF8L2-42	NM_001136533	exon1	c.C544A	p.L182M	TCTGCCCTGCCCC	.	476	29	320	1	.	0	0	0	0	0	3
DGAT2L6	347516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	69424885	69424885	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DGAT2L6-131	NM_198512	exon7	c.C943A	p.L315M	AGTGCCCTGCGCA	.	264	38	179	1	.	0	0	0	0	0	4
RPS6KA6	27330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	83372103	83372103	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RPS6KA6-615	NM_014496	exon11	c.G914T	p.R305M	AACATCCTTAGAA	.	163	52	179	0	.	0	0	0	0	0	5
SEC62	7095	ucsc.edu	37	3	169700673	169700673	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEC62-69	NM_003262	exon4	c.G430A	p.D144N	AAAAAAGATGGTG	.	20	2	31	0	.	36	27	9	0	0	1
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	24	9	6	2	C|0.960;G|0.040	7	4	3	0	0	1
PCDHB6	56130	hgsc.bcm.edu	37	5	140531592	140531592	+	Missense_Mutation	SNP	C	C	T	rs55834559	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB6-91	NM_018939	exon1	c.C1754T	p.T585I	TGGTGACCAAGGT	.	36	9	8	1	C|0.966;T|0.034	47	45	2	0	0	1
ESPN	83715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6488334	6488334	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ESPN-514	NM_031475	exon2	c.G343C	p.G115R	CGCTTCGGCCACC	.	189	159	149	1	.	0	0	0	0	0	5
CAMTA1	23261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	7725013	7725013	+	Silent	SNP	G	G	A	rs149314642	unknown	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CAMTA1-520	NM_015215	exon9	c.G2406A	p.A802A	CACGGCGCTCTCA	.	135	37	116	0	G|1.000;A|0.000	0	0	0	0	0	4
TRIM22	10346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5730589	5730589	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRIM22-90	NM_006074	exon8	c.C1208G	p.P403R	ATAGACCTCAATA	.	70	58	70	0	.	2	0	2	0	0	5
PLXNC1	10154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	94641749	94641749	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLXNC1-92	NM_005761	exon13	c.C2459T	p.T820M	TGCGCACGAATGT	.	207	100	122	0	.	0	0	0	0	0	5
ATP2A2	488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	110765566	110765566	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP2A2-94	NM_001681	exon8	c.A839G	p.N280S	ACTTCAATGACCC	.	131	63	74	0	.	3	3	0	0	0	5
SIX4	51804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	61190755	61190755	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SIX4-154	NM_017420	exon1	c.C38T	p.A13V	TCCGCCGCACTTG	.	78	33	84	0	.	0	0	0	0	0	5
HSDL1	83693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84164035	84164035	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HSDL1-90	NM_031463	exon4	c.T222A	p.G74G	TGTTGCACCTAGG	.	83	42	51	1	.	0	0	0	0	0	5
FCHO1	23149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17883278	17883278	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FCHO1-90	NM_001161358	exon9	c.A607G	p.M203V	CAAGCCATGGAGG	.	360	166	236	0	.	0	0	0	0	0	5
SEC14L6	730005	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	22	30921859	30921859	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001193336	exon9	c.G725A	p.G242E	GTCCCCCCAAACT	.	127	102	138	0	.	0	0	0	0	0	3
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	7766806	7766806	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADCY2-97	NM_020546	exon17	c.C2101G	p.L701V	TTTTTCCTGAGTG	.	72	32	39	0	.	0	0	0	0	0	5
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127626549	127626549	+	Missense_Mutation	SNP	T	T	G	rs183350360	unknown	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBN2-146	NM_001999	exon50	c.A6320C	p.N2107T	TCAAAATTTGTGA	.	137	66	79	0	T|0.999;G|0.000	1	0	1	0	0	5
FLT4	2324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	180036020	180036020	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FLT4-1490	NM_182925	exon29	c.T3841C	p.S1281P	CCTCCGAGGCCAG	.	203	80	113	1	.	2	2	0	0	0	4
GARS	2617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	30643172	30643172	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GARS-91	NM_002047	exon6	c.A719G	p.E240G	AAATGGAAAGTGT	.	95	41	56	0	.	17	9	8	0	0	5
AKR1D1	6718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	137761321	137761321	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AKR1D1-91	NM_001190907	exon1	c.C57A	p.P19P	CATTCCCATCATC	.	241	16	146	0	.	0	0	0	0	0	3
PROSC	11212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	37632983	37632983	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PROSC-90	NM_007198	exon6	c.C581A	p.P194Q	AAGGACCAAATCC	.	109	92	123	0	.	1	0	1	0	0	5
EYA1	2138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	72123405	72123405	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EYA1-652	NM_000503	exon17	c.C1684G	p.Q562E	CTCCTTGTTCTTC	.	113	88	166	0	.	0	0	0	0	0	5
ZCCHC6	79670	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	88968081	88968081	+	Missense_Mutation	SNP	G	G	A	rs142251867	unknown	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZCCHC6-92	NM_024617	exon2	c.C34T	p.R12C	TAGTGCGCTTCAC	.	17	11	18	0	G|1.000;A|0.000	0	0	0	0	0	3
OR13C8	138802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107331706	107331706	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR13C8-70	NM_001004483	exon1	c.G258T	p.L86L	CTTTCTGGCAGTA	.	97	31	108	0	.	0	0	0	0	0	5
LAMC3	10319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	133914550	133914550	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LAMC3-93	NM_006059	exon6	c.A1198G	p.T400A	ACAGGCACCTGCG	.	80	66	104	0	.	0	0	0	0	0	5
DTD2	112487	hgsc.bcm.edu	37	14	31926584	31926584	+	Missense_Mutation	SNP	G	G	A	rs3087952	unknown	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_080664	exon1	c.C16T	p.R6W	GAATCCGGCTACC	.	171	9	17	0	.	4	2	2	0	0	1
PKD1	5310	hgsc.bcm.edu	37	16	2152129	2152129	+	Silent	SNP	A	A	G	rs79276175	unknown	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKD1-91	NM_000296	exon26	c.T9330C	p.P3110P	ACAGAAAGGGATG	.	105	91	8	2	A|0.500;G|0.500	12	0	12	0	0	1
TEKT4	150483	hgsc.bcm.edu	37	2	95539855	95539855	+	Splice_Site	SNP	T	T	G	rs201662522	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TEKT4-155	NM_144705	exon3	c.713+2T>G	.	GAGAGGTGGGCCC	.	114	6	72	1	T|0.970;G|0.030	6	0	6	0	0	1
CRIPAK	285464	hgsc.bcm.edu	37	4	1388867	1388867	+	Missense_Mutation	SNP	A	A	C	rs76058011	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRIPAK-90	NM_175918	exon1	c.A568C	p.I190L	CGCCTGATCACAC	.	497	100	27	1	A|0.994;C|0.006	38	2	36	0	0	1
CRIPAK	285464	hgsc.bcm.edu	37	4	1389003	1389003	+	Missense_Mutation	SNP	G	G	C	rs148482314	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRIPAK-90	NM_175918	exon1	c.G704C	p.R235P	CGTGCCGATGCGG	.	177	18	14	2	G|0.999;C|0.001	9	3	6	0	0	1
ND2	0	bcgsc.ca	37	MT	5364	5364	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361453	exon1	c.T895C	p.S299P	ATCTACTCCACCT	.	188	11	35	0	.	63329	60931	2355	24	19	1
ND2	0	bcgsc.ca	37	MT	5479	5479	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361453	exon1	c.T1010C	p.L337P	TACTCCTACCTAT	.	169	20	31	0	.	4704	4132	571	0	1	1
COX1	5742	broad.mit.edu	37	MT	6444	6444	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361624	exon1	c.A541C	p.T181P	TACCAAACGCCCC	.	72	35	14	0	.	95814	59541	36209	35	29	1
ND4	0	broad.mit.edu	37	MT	11461	11461	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361381	exon1	c.A702G	p.V234V	CGCAGTACTCTTA	.	45	3	13	0	.	30639	26743	3813	47	35	1
ND4	0	broad.mit.edu;bcgsc.ca	37	MT	11864	11864	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361381	exon1	c.T1105C	p.L369L	CTCGCCTTACCCC	.	52	8	20	0	.	84638	70484	14117	20	16	2
ND5	0	broad.mit.edu	37	MT	13369	13369	+	Missense_Mutation	SNP	T	T	C	rs3899498	byfrequency;alternate_allele	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361567	exon1	c.T1033C	p.S345P	TCCGGGTCCATCA	.	101	9	22	0	A|0.045;G|0.955	5966	5344	606	6	10	1
SKI	6497	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	2235335	2235335	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SKI-838	NM_003036	exon4	c.C1268T	p.P423L	TCGCACCGCCGGC	.	95	86	83	0	.	8	2	6	0	0	4
FBXO6	26270	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11728807	11728807	+	Missense_Mutation	SNP	G	G	A	rs146139993	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXO6-226	NM_018438	exon2	c.G92A	p.R31H	CCGCCCGCCAGCT	.	164	143	201	2	G|1.000;A|0.000	45	31	14	0	0	4
FHAD1	114827	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15701119	15701119	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FHAD1-69	NM_052929	exon26	c.G3503A	p.R1168H	AGGCGCGCTCACC	.	152	135	220	2	.	0	0	0	0	0	3
CASP9	842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15820441	15820441	+	Silent	SNP	G	G	A	rs149161953	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CASP9-1083	NM_001229	exon8	c.C1104T	p.D368D	GATGTCGTCCAGG	.	47	42	49	0	G|0.999;A|0.000	10	1	9	0	0	5
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19479813	19479813	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBR4-612	NM_020765	exon46	c.C6814T	p.R2272C	TTTTGCGCTTTCG	.	106	99	179	0	.	2	0	2	0	0	5
WNT4	54361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22446583	22446583	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WNT4-524	NM_030761	exon5	c.G1016A	p.R339Q	CACTGCCGGCACT	.	85	78	79	0	.	0	0	0	0	0	5
PIGV	55650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27121404	27121404	+	Silent	SNP	G	G	A	rs147229452	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIGV-91	NM_001202554	exon3	c.G879A	p.P293P	TGAACCGCCTTGG	.	181	167	213	0	G|1.000;A|0.000	10	0	9	0	1	5
HDAC1	3065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32792571	32792571	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HDAC1-659	NM_004964	exon5	c.G387A	p.T129T	GCAGACGGACATC	.	76	68	138	0	.	84	1	83	0	0	5
AGO3	192669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36437637	36437637	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_024852	exon4	c.G325A	p.V109I	TTAGACGTTACTT	.	124	111	234	0	.	0	0	0	0	0	5
SMAP2	64744	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	40872411	40872411	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMAP2-68	NM_022733	exon2	c.C107T	p.P36L	CAGGGCCGCGATG	.	64	62	81	0	.	0	0	0	0	0	4
PTPRF	5792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44057523	44057523	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPRF-232	NM_002840	exon10	c.G1572A	p.S524S	GGAGTCGGACACC	.	138	40	254	0	.	3	2	1	0	0	5
CLK2	1196	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	155238573	155238573	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLK2-333	NM_003993	exon4	c.G410A	p.R137Q	GCTCTCCGGCTGC	.	51	42	68	1	.	4	0	4	0	0	3
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	155348172	155348172	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASH1L-234	NM_018489	exon10	c.G6232A	p.V2078I	CATCAACGTAGAC	.	93	7	138	0	.	0	0	0	0	0	3
PEAR1	375033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156882744	156882744	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PEAR1-71	NM_001080471	exon18	c.C2392T	p.R798C	AGCGGGCGCCTGG	.	96	90	148	0	.	0	0	0	0	0	5
POU2F1	5451	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167343435	167343435	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POU2F1-579	NM_002697	exon6	c.G493A	p.A165T	CACTCCGCCAGCC	.	152	63	195	1	.	0	0	0	0	0	3
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	176833494	176833494	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASTN1-319	NM_004319	exon23	c.G3811A	p.D1271N	TGAGGTCCCGGCT	.	74	71	124	1	.	1	0	1	0	0	4
ZNF648	127665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182025773	182025773	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF648-91	NM_001009992	exon2	c.C1373T	p.A458V	GGCTGCGCGAAGG	.	114	23	66	0	.	0	0	0	0	0	5
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	185956660	185956660	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HMCN1-113	NM_031935	exon20	c.C3032T	p.S1011F	AACCGTCTGTCAT	.	66	55	93	0	.	0	0	0	0	0	5
CFH	3075	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	196659281	196659281	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CFH-566	NM_001014975	exon9	c.C1248T	p.C416C	TGCCTGCCATCCT	.	432	151	646	2	.	1	1	0	0	0	3
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197060024	197060024	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASPM-615	NM_018136	exon23	c.C9592T	p.R3198C	TTTTACGGAGGAG	.	47	15	40	0	.	2	0	2	0	0	5
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	210856743	210856743	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNH1-94	NM_172362	exon11	c.G2850A	p.Q950Q	AGAGAGCTGTTTC	.	87	33	161	0	.	0	0	0	0	0	5
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216373375	216373375	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USH2A-115	NM_206933	exon17	c.G3405C	p.R1135S	TACACTCCTTGTT	.	110	104	154	0	.	0	0	0	0	0	5
DISP1	84976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	223116579	223116579	+	Silent	SNP	G	G	A	rs143316612	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DISP1-68	NM_032890	exon4	c.G414A	p.T138T	GACTACGTGCTGT	.	213	186	290	1	G|0.998;A|0.002	3	0	3	0	0	5
ZBTB18	10472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	244218382	244218382	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_205768	exon2	c.C1306T	p.R436C	CTCAAGCGCCACG	.	184	167	324	0	.	12	3	9	0	0	5
ITIH5	80760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	7608357	7608357	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITIH5-92	NM_030569	exon13	c.C2163T	p.N721N	CTCTCCGTTCACT	.	82	71	98	0	.	0	0	0	0	0	5
MLLT10	8028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	21971185	21971185	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLLT10-658	NM_001195626	exon12	c.C1698T	p.N566N	ACACAACGGTAAG	.	38	33	39	0	.	0	0	0	0	0	5
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	24832505	24832505	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1217-98	NM_019590	exon19	c.G4306A	p.V1436M	CCAGTCGTGTGCC	.	135	125	204	0	.	10	1	9	0	0	5
KIAA1462	57608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	30315257	30315257	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1462-72	NM_020848	exon3	c.C3820T	p.L1274L	AGCTCAGGACTCT	.	43	40	53	0	.	2	1	1	0	0	5
PARD3	56288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	34400183	34400183	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PARD3-92	NM_019619	exon25	c.C3985T	p.R1329W	CTTGCCGGAAGGG	.	64	58	66	0	.	8	0	8	0	0	5
GDF10	2662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48428896	48428896	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GDF10-650	NM_004962	exon2	c.G990A	p.A330A	TTTCAGCGCCCGG	.	67	64	60	0	.	1	0	1	0	0	5
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	64975209	64975209	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	JMJD1C-275	NM_032776	exon7	c.T829C	p.Y277H	GTGTATAATGGCT	.	59	53	76	0	.	0	0	0	0	0	5
MICU1	10367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	74235015	74235015	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001195518	exon8	c.G776A	p.R259H	CTGTGGCGCATAC	.	136	129	188	0	.	55	1	54	0	0	5
GRID1	2894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	87379740	87379740	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRID1-142	NM_017551	exon14	c.C2244T	p.Y748Y	GGCTGCGTATTCC	.	194	166	298	2	.	8	0	8	0	0	5
MYOF	26509	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	95103662	95103662	+	Missense_Mutation	SNP	C	C	T	rs201449564	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYOF-93	NM_013451	exon38	c.G4277A	p.R1426Q	ATGTCCCGGCATG	.	67	62	91	1	C|1.000;T|0.000	7	1	6	0	0	3
XPNPEP1	7511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	111633162	111633162	+	Missense_Mutation	SNP	C	C	T	rs201456347	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	XPNPEP1-94	NM_020383	exon16	c.G1415A	p.R472Q	ATTGTCCGCGTCA	.	146	129	222	0	C|0.999;T|0.001	33	1	32	0	0	4
C10orf120	399814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124458908	124458908	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C10orf120-91	NM_001010912	exon2	c.G197A	p.R66K	TCTGATCTGTAGA	.	65	18	79	0	.	0	0	0	0	0	5
NRIP3	56675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	9009807	9009807	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NRIP3-186	NM_020645	exon2	c.G197A	p.R66K	AGGCGCCTCTGCA	.	99	88	127	0	.	1	0	1	0	0	5
PLEKHA7	144100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	16838355	16838355	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLEKHA7-227	NM_175058	exon11	c.G1858A	p.A620T	TGACAGCGTGGCC	.	70	63	139	0	.	0	0	0	0	0	5
MRGPRX4	117196	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18195449	18195449	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MRGPRX4-91	NM_054032	exon1	c.G646A	p.V216M	CTGTACGTGACCA	.	68	63	89	1	.	0	0	0	0	0	4
SMTNL1	219537	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57313434	57313434	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMTNL1-23	NM_001105565	exon4	c.G998A	p.R333H	CAGAGCGCAGGGT	.	128	58	173	1	.	0	0	0	0	0	4
C11orf95	65998	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	63531283	63531283	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001144936	exon5	c.C1644T	p.D548D	CTCTTCGTCCTCC	.	11	10	42	0	.	13	0	13	0	0	4
RCOR2	283248	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	63679516	63679516	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RCOR2-92	NM_173587	exon12	c.C1393T	p.R465X	GCTGTCGGAGCAG	.	10	10	18	0	.	3	0	3	0	0	3
RPS6KA4	8986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64127716	64127716	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RPS6KA4-1036	NM_001006944	exon3	c.C209T	p.A70V	GCAAGGCGGCGCT	.	48	40	32	0	.	8	0	8	0	0	5
GAL3ST3	89792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65810719	65810719	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GAL3ST3-91	NM_033036	exon3	c.C555T	p.R185R	GGGCGCGCGCAGG	.	108	57	42	0	.	0	0	0	0	0	5
SPTBN2	6712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66483354	66483354	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPTBN2-155	NM_006946	exon3	c.C256T	p.R86W	CGTCCCGGAGGTC	.	114	54	152	0	.	3	0	3	0	0	5
PIWIL4	143689	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94340769	94340769	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIWIL4-91	NM_152431	exon14	c.C1803T	p.C601C	GACTTGCAAGCTC	.	46	41	60	1	.	0	0	0	0	0	4
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108098418	108098418	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATM-3419	NM_000051	exon2	c.C67T	p.R23X	ACAGAACGAAAGG	.	119	110	212	0	.	0	0	0	0	0	5
CACNA2D4	93589	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	1906598	1906598	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNA2D4-23	NM_172364	exon35	c.C3099T	p.C1033C	GGGCCCGCACTCC	.	30	21	25	0	.	0	0	0	0	0	4
NRIP2	83714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	2937196	2937196	+	Missense_Mutation	SNP	A	A	G	rs200104814	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NRIP2-187	NM_031474	exon4	c.T596C	p.L199P	GCTTTTAGGACCC	.	38	12	38	0	A|0.999;G|0.001	3	3	0	0	0	4
CD9	928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6342621	6342621	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CD9-91	NM_001769	exon4	c.C317T	p.A106V	TAGCTGCGGCCAT	.	193	98	144	0	.	265	136	129	0	0	5
ABCC9	10060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	21962829	21962829	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCC9-96	NM_005691	exon35	c.T4272C	p.I1424I	CTGAGCAATTTCT	.	35	14	18	0	.	1	1	0	0	0	5
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	26493203	26493203	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITPR2-542	NM_002223	exon56	c.G7916A	p.G2639D	CTGTCGCCTTCAT	.	145	56	110	0	.	22	10	12	0	0	4
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	26784944	26784944	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITPR2-542	NM_002223	exon22	c.A2789G	p.Q930R	ACCATCTGGGTCA	.	141	58	139	0	.	0	0	0	0	0	5
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49420173	49420173	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLL2-612	NM_003482	exon48	c.G15576A	p.L5192L	GTGAGGCAGCAGC	.	183	86	186	0	.	30	18	12	0	0	5
DHH	50846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49483720	49483720	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DHH-710	NM_021044	exon3	c.C1113T	p.P371P	CCCGCCGGGGAGC	.	140	65	102	0	.	16	9	7	0	0	5
KRT7	3855	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	52627326	52627326	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRT7-90	NM_005556	exon1	c.C246A	p.P82P	CGACCCCTCCCTC	.	142	60	90	0	.	0	0	0	0	0	4
KRT77	374454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53088535	53088535	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRT77-187	NM_175078	exon5	c.G955A	p.V319I	GGATGACGTTGGT	.	151	76	138	0	.	0	0	0	0	0	5
GPR182	11318	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	57389484	57389484	+	Missense_Mutation	SNP	G	G	A	rs145408449	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR182-500	NM_007264	exon2	c.G491A	p.R164H	GGCAGCGTTACCA	.	177	14	136	0	G|1.000;A|0.000	0	0	0	0	0	3
LRP1	4035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57581075	57581075	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRP1-596	NM_002332	exon42	c.C6867A	p.A2289A	CCTGGCCTATCAC	.	269	118	209	1	.	0	0	0	0	0	4
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57584685	57584685	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRP1-596	NM_002332	exon43	c.C7129T	p.R2377C	GACATCCGTACCC	.	178	28	150	0	.	1	1	0	0	0	5
KIF5A	3798	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57965871	57965871	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF5A-517	NM_004984	exon14	c.G1390A	p.E464K	GACAACGAGAAGG	.	229	109	172	1	.	0	0	0	0	0	4
MON2	23041	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	62940761	62940761	+	Missense_Mutation	SNP	G	G	A	rs201327821	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MON2-514	NM_015026	exon22	c.G2662A	p.V888M	GAATGCGTGTTGC	.	202	91	157	1	G|0.999;A|0.001	10	4	6	0	0	4
MDM2	4193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	69210628	69210628	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MDM2-1270	NM_002392	exon4	c.C211T	p.R71X	ACTAAACGATTAT	.	77	26	42	0	.	3	1	2	0	0	5
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	78515967	78515967	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NAV3-279	NM_014903	exon16	c.C3997T	p.P1333S	TCCAGCCCAGCAT	.	263	45	239	0	.	0	0	0	0	0	5
MGAT4C	25834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	86377312	86377312	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MGAT4C-93	NM_013244	exon6	c.T284C	p.L95S	CTTTGTAAAGGTG	.	105	60	59	0	.	0	0	0	0	0	5
CEP290	80184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	88479859	88479859	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CEP290-96	NM_025114	exon34	c.G4394A	p.R1465Q	ATTATTCGAATGT	.	107	47	82	0	.	2	1	1	0	0	5
PRDM4	11108	ucsc.edu;bcgsc.ca;mdanderson.org	37	12	108145670	108145670	+	Silent	SNP	G	G	A	rs146564582	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRDM4-154	NM_012406	exon5	c.C648T	p.D216D	AACACCGTCCATC	.	157	63	115	1	G|0.993;A|0.007	33	17	16	0	0	3
RNFT2	84900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	117273985	117273985	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001109903	exon10	c.1099-1G>C	.	CTCAAAGAACTAT	.	107	45	91	0	.	0	0	0	0	0	4
FBXW8	26259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117465865	117465865	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXW8-229	NM_153348	exon11	c.C1685T	p.A562V	AGTTTGCGGTGGA	.	115	53	88	0	.	0	0	0	0	0	5
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120613993	120613993	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GCN1L1-94	NM_006836	exon10	c.C866T	p.T289M	TCAAGCGTCACTG	.	154	23	121	0	.	8	7	1	0	0	5
RHOF	54509	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122217484	122217484	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RHOF-660	NM_019034	exon5	c.C556T	p.R186W	CCTCCCGGAAGAC	.	170	86	136	2	.	48	26	22	0	0	4
SETD1B	23067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	122261635	122261635	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SETD1B-86	NM_015048	exon12	c.C5021T	p.T1674M	ACGACACGCTCTG	.	148	21	148	0	.	10	8	2	0	0	4
SLC7A1	6541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	30088674	30088674	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC7A1-90	NM_003045	exon13	c.G1833A	p.A611A	CAGGGACGCCTCC	.	44	43	75	0	.	8	0	8	0	0	5
ARL11	115761	ucsc.edu;bcgsc.ca;mdanderson.org	37	13	50204724	50204724	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARL11-90	NM_138450	exon2	c.C141T	p.N47N	TTTCAACGTGGAG	.	163	139	201	2	.	4	0	4	0	0	3
SLC10A2	6555	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	103701788	103701788	+	Missense_Mutation	SNP	G	G	A	rs145541774	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC10A2-94	NM_000452	exon5	c.C770T	p.T257M	GCAACCGTTCGGC	.	97	8	137	0	G|1.000;A|0.000	0	0	0	0	0	3
ATP11A	23250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	113516786	113516786	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP11A-138	NM_032189	exon25	c.G2888A	p.R963H	GCTGGCGCGTGTT	.	106	100	161	1	.	3	0	3	0	0	5
RPL10L	140801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	47120739	47120739	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RPL10L-91	NM_080746	exon1	c.C201T	p.A67A	ACGGGCGGCCTCC	.	93	78	126	1	.	0	0	0	0	0	4
NID2	22795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	52478319	52478319	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NID2-158	NM_007361	exon17	c.G3503A	p.R1168H	CCAGCACGGCTGA	.	89	70	110	0	.	2	2	0	0	0	5
DACT1	51339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	59113818	59113818	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DACT1-291	NM_016651	exon4	c.G2477A	p.R826Q	GCTTTCGGTCTGG	.	50	46	57	0	.	0	0	0	0	0	5
JKAMP	51528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	59970693	59970693	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	JKAMP-67	NM_016475	exon7	c.T839C	p.L280P	TGCCCCTTTTGGC	.	108	8	129	0	.	50	50	0	0	0	3
NUMB	8650	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	73743997	73743997	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NUMB-1062	NM_001005743	exon13	c.C1245T	p.T415T	CCACTCGGTCCCT	.	48	34	82	0	.	0	0	0	0	0	4
CYFIP1	23191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	22940826	22940826	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CYFIP1-99	NM_014608	exon11	c.C1091T	p.A364V	AGCTGGCGCGCTA	.	150	133	249	1	.	11	1	10	0	0	4
PGBD4	161779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34396376	34396376	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PGBD4-90	NM_152595	exon1	c.C1644T	p.Y548Y	CCAATACGACAAG	.	51	46	94	0	.	2	0	2	0	0	5
DUOX2	50506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45394110	45394110	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DUOX2-95	NM_014080	exon21	c.C2732T	p.S911L	AATCCCGACTCCC	.	192	168	305	0	.	0	0	0	0	0	5
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	63063254	63063289	+	In_Frame_Del	DEL	TGCTGGACCAGACCAAGACTCTCGCAGAGTCTGCCT	TGCTGGACCAGACCAAGACTCTCGCAGAGTCTGCCT	-	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	TGCTGGACCAGACCAAGACTCTCGCAGAGTCTGCCT	TGCTGGACCAGACCAAGACTCTCGCAGAGTCTGCCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TLN2-573	NM_015059	exon39	c.5288_5323del	p.1763_1775del	TGACGGTGCTGGA	.	69	27	143	0	.	0	0	0	0	0	3
IGDCC3	9543	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65622120	65622120	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGDCC3-93	NM_004884	exon12	c.C1941T	p.I647I	GACCCCGATGTGG	.	130	39	280	1	.	0	0	0	0	0	4
CYP11A1	1583	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74632008	74632008	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CYP11A1-92	NM_000781	exon6	c.G1077A	p.A359A	GTGCCGCGCAGCC	.	80	73	149	2	.	841	34	805	1	1	4
RASGRF1	5923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79323771	79323771	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RASGRF1-662	NM_001145648	exon8	c.C1233T	p.Y411Y	CTTGGCGTAGTCC	.	86	80	164	1	.	6	0	6	0	0	5
MESDC2	23184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81271798	81271798	+	Missense_Mutation	SNP	C	C	T	rs185628590	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MESDC2-90	NM_015154	exon3	c.G467A	p.R156H	ATAGCACGGTCTG	.	71	62	127	0	C|0.999;T|0.000	72	1	71	0	0	5
PRR25	388199	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	857545	857545	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRR25-135	NM_001013638	exon2	c.C542T	p.P181L	AGGCGCCGGGCCT	.	31	13	12	0	.	0	0	0	0	0	3
C16orf59	80178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2514193	2514193	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C16orf59-90	NM_025108	exon9	c.G1118A	p.R373Q	AGCTGCGAGTGGC	.	155	32	118	0	.	1	0	1	0	0	5
PAQR4	124222	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3021279	3021279	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAQR4-68	NM_152341	exon2	c.C288T	p.S96S	AGGCTCCGTGCTC	.	140	67	113	2	.	29	21	8	0	0	3
ZNF205	7755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3170139	3170139	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF205-90	NM_003456	exon7	c.C1478T	p.A493V	TCACCGCGCACCA	.	385	204	141	0	.	18	11	7	0	0	5
ZNF213	7760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3191159	3191159	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF213-90	NM_004220	exon6	c.C1191T	p.G397G	CACGGGCGAGAAG	.	281	114	164	0	.	20	11	9	0	0	5
ZNF500	26048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4802835	4802835	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF500-93	NM_021646	exon6	c.G985A	p.E329K	CACATTCGGGGCA	.	181	82	147	0	.	5	3	2	0	0	5
GTF3C1	2975	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27483225	27483225	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GTF3C1-94	NM_001520	exon30	c.G4370A	p.R1457Q	TACTCCCGATAGA	.	136	61	128	2	.	40	26	14	0	0	3
ZNF785	146540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30594258	30594258	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF785-91	NM_152458	exon3	c.G841A	p.E281K	GCTTCTCGCCCGT	.	183	67	147	0	.	17	10	7	0	0	5
STX1B	112755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31004545	31004545	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STX1B-90	NM_052874	exon9	c.G692A	p.R231H	TCGATGCGGTCAA	.	247	108	262	0	.	0	0	0	0	0	5
PRSS8	5652	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31143831	31143831	+	Silent	SNP	G	G	A	rs148214625	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_002773	exon5	c.C624T	p.D208D	CTTGGCGTCGATG	.	281	128	282	2	G|0.999;A|0.001	114	112	2	0	0	4
VPS35	55737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	46697064	46697064	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VPS35-90	NM_018206	exon14	c.G1658A	p.W553X	TTTTCCCATTTGT	.	73	31	26	0	.	0	0	0	0	0	5
PHKB	5257	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	47644802	47644802	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHKB-154	NM_000293	exon14	c.C1429T	p.R477C	GATCAACGTAACG	.	167	70	185	2	.	75	38	37	0	0	3
KATNB1	10300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57775658	57775658	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KATNB1-90	NM_005886	exon3	c.C100T	p.R34W	TCCGGGCGGCTGC	.	189	24	173	0	.	44	34	10	0	0	4
CDH16	1014	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	66944294	66944294	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH16-93	NM_004062	exon15	c.G2036A	p.R679H	TCTTGGCGGGGTG	.	177	93	130	2	.	0	0	0	0	0	3
CDH16	1014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	66946627	66946627	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH16-93	NM_004062	exon10	c.C1222T	p.R408X	CTGCTCGGAGTGG	.	183	79	157	0	.	0	0	0	0	0	5
ENKD1	84080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67697371	67697371	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_032140	exon6	c.C832T	p.R278C	GCATGCGCGTGTG	.	97	42	38	0	.	52	22	30	0	0	5
CDH3	1001	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	68732181	68732181	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH3-950	NM_001793	exon16	c.G2368A	p.A790T	GACGCCGCGTCCC	.	221	13	143	0	.	2	2	0	0	0	3
GLG1	2734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	74491779	74491779	+	Silent	SNP	G	G	A	rs148460697	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GLG1-136	NM_001145667	exon24	c.C3258T	p.R1086R	ACGCCCGCGGCCA	.	251	47	191	0	G|1.000;A|0.000	1	1	0	0	0	4
KARS	3735	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	75665701	75665701	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KARS-92	NM_001130089	exon9	c.G1052A	p.R351Q	TCATTCCGGAACT	.	234	108	206	1	.	197	101	96	0	0	3
GSE1	23199	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	85699630	85699630	+	Missense_Mutation	SNP	T	T	C	rs17853763	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_014615	exon13	c.T2807C	p.V936A	TTGGTGTTGCTGC	.	145	8	78	0	T|1.000;|0.000	22	22	0	0	0	3
FOXC2	2303	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	16	86602305	86602305	+	Missense_Mutation	SNP	A	A	G	rs138612549	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FOXC2-226	NM_005251	exon1	c.A1364G	p.N455S	TGTTCAACTCCCA	.	196	100	154	0	A|0.998;G|0.002	1	1	0	0	0	3
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	89346959	89346959	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD11-139	NM_001256183	exon9	c.G5991A	p.A1997A	GGGGTCCGCGGGG	.	70	34	29	0	.	15	7	8	0	0	4
SPG7	6687	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	89611117	89611117	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPG7-226	NM_003119	exon10	c.C1386T	p.D462D	TTTGGACGGTGCT	.	283	127	200	1	.	100	52	48	0	0	3
PRPF8	10594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	1561614	1561614	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRPF8-525	NM_006445	exon34	c.G5438A	p.R1813H	CCTGTGCGTGGGT	.	172	161	324	0	.	118	1	117	0	0	5
SGSM2	9905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2265553	2265553	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SGSM2-68	NM_001098509	exon4	c.G447A	p.A149A	CCTGGCGGAAAAC	.	70	66	131	0	.	0	0	0	0	0	5
ATP2A3	489	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	3840801	3840801	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP2A3-156	NM_174956	exon15	c.G2230A	p.V744M	CAGCCACGATGGA	.	144	136	314	1	.	1	1	0	0	0	4
AIPL1	23746	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	6329050	6329050	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AIPL1-90	NM_014336	exon6	c.G885A	p.P295P	CATGGACGGCTCC	.	60	56	76	1	.	0	0	0	0	0	4
KIAA0753	9851	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	6528100	6528100	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA0753-90	NM_014804	exon4	c.G800A	p.R267Q	AGCATTCGGGCAG	.	62	58	87	1	.	0	0	0	0	0	3
EVPLL	645027	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	18286644	18286644	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145127	exon8	c.C732T	p.D244D	GGAGGACGGCAAG	.	45	44	60	0	.	0	0	0	0	0	4
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27419408	27419408	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO18A-22	NM_078471	exon34	c.G5140A	p.E1714K	GGTCTTCGATCTC	.	66	57	120	0	.	9	0	9	0	0	5
KRT12	3859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39018841	39018841	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRT12-91	NM_000223	exon7	c.G1363A	p.A455T	ACTGTGCTTGTGA	.	78	73	129	0	.	0	0	0	0	0	5
PTRF	284119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40574938	40574938	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTRF-153	NM_012232	exon1	c.A178G	p.K60E	TGATTTTGTCCAG	.	137	125	191	0	.	112	5	107	0	0	5
ASB16	92591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42254580	42254580	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASB16-227	NM_080863	exon3	c.G1044A	p.A348A	CGGGGCGCAGCCA	.	33	11	37	0	.	6	5	1	0	0	5
NGFR	4804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47590175	47590175	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NGFR-947	NM_002507	exon6	c.C1088T	p.A363V	ACCTGGCGGGCGA	.	204	95	258	0	.	0	0	0	0	0	5
ABCC3	8714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48741343	48741343	+	Silent	SNP	G	G	A	rs191057975	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCC3-93	NM_003786	exon10	c.G1209A	p.A403A	ACGTGCGTCCACT	.	104	93	298	0	G|0.999;A|0.001	2	0	2	0	0	5
KIAA0195	9772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73484865	73484865	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA0195-91	NM_014738	exon7	c.C638T	p.P213L	TGGAGCCGGGAGA	.	49	40	57	0	.	17	1	15	1	0	5
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76570839	76570839	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH17-142	NM_173628	exon2	c.A301G	p.I101V	GGCTGATGTCGCC	.	140	130	220	0	.	0	0	0	0	0	5
PCYT2	5833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79865456	79865456	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCYT2-68	NM_002861	exon6	c.C511T	p.R171W	ACTCCCGGTACTC	.	128	112	193	1	.	50	0	50	0	0	5
FASN	2194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80039618	80039618	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FASN-90	NM_004104	exon37	c.G6265A	p.A2089T	AGGACGCCATGCG	.	115	46	200	0	.	37	19	18	0	0	5
GREB1L	80000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	18981163	18981163	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001142966	exon6	c.G585A	p.T195T	TTTCACGGAATTT	.	90	84	145	0	.	0	0	0	0	0	5
SETBP1	26040	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	42531274	42531274	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SETBP1-155	NM_015559	exon4	c.G1969A	p.V657M	CTCGGCGTGTTGG	.	101	43	134	2	.	0	0	0	0	0	3
AP3D1	8943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2129403	2129403	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AP3D1-90	NM_001261826	exon7	c.A646G	p.K216E	AGTTCTTAGGGTT	.	213	196	306	1	.	24	2	22	0	0	5
TJP3	27134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3734400	3734400	+	Missense_Mutation	SNP	G	G	A	rs200603772	unknown;alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TJP3-92	NM_001267561	exon8	c.G980A	p.R327Q	CTCAGCGGAGCCC	.	47	47	61	0	G|0.999;T|0.000	0	0	0	0	0	5
KDM4B	23030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	5143983	5143983	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KDM4B-226	NM_015015	exon19	c.C2556T	p.C852C	GAAATGCGTGTAC	.	43	39	107	0	.	0	0	0	0	0	5
SLC25A23	79085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6452332	6452332	+	Silent	SNP	G	G	A	rs148491192	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC25A23-92	NM_024103	exon8	c.C1062T	p.A354A	GTAGACGGCCAGG	.	64	64	136	0	G|1.000;A|0.000	2	0	2	0	0	5
TNPO2	30000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12814290	12814290	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNPO2-227	NM_013433	exon19	c.G2161A	p.V721I	TGCAGACGGAGAT	.	135	125	245	0	.	74	0	74	0	0	5
PRDX2	7001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12910730	12910730	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRDX2-90	NM_005809	exon5	c.T454A	p.F152I	CATCCACGGAGCG	.	117	106	191	1	.	738	1	736	0	1	5
NR2F6	2063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17343368	17343368	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NR2F6-186	NM_005234	exon4	c.C1008T	p.T336T	ATACTCGGTGAGG	.	31	29	26	0	.	46	0	46	0	0	5
NR2C2AP	126382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19313147	19313147	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NR2C2AP-23	NM_176880	exon4	c.C296T	p.S99L	TGAAGCGAGTTGT	.	80	69	150	0	.	1	0	1	0	0	5
CHST8	64377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34263477	34263477	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHST8-156	NM_001127895	exon5	c.G784A	p.E262K	CCCTTCGAGAGGC	.	139	127	218	0	.	0	0	0	0	0	5
RYR1	6261	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38931501	38931501	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RYR1-100	NM_001042723	exon2	c.G162A	p.A54A	CAACGCGCAGGTC	.	121	103	191	2	.	0	0	0	0	0	4
AXL	558	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41726567	41726567	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AXL-1403	NM_021913	exon2	c.G112A	p.V38M	CCCTTCGTGGGCA	.	134	129	191	2	.	0	0	0	0	0	3
TMEM145	284339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	42821906	42821906	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM145-90	NM_173633	exon12	c.G946A	p.G316S	CCGGCCGGCTACG	.	144	8	178	0	.	0	0	0	0	0	3
ZNF225	7768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44636010	44636010	+	Missense_Mutation	SNP	C	C	T	rs200370101	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_013362	exon5	c.C1243T	p.R415C	TCACAACGTTATT	.	74	65	128	0	.	1	0	1	0	0	5
ZNF473	25888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50549939	50549939	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF473-91	NM_015428	exon5	c.C2239T	p.R747C	CTTGTCCGCCACC	.	76	71	88	0	.	10	0	10	0	0	5
TMC4	147798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54669182	54669182	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMC4-91	NM_001145303	exon6	c.C934T	p.R312C	GCTGGCGCAGCCG	.	86	46	161	0	.	4	2	2	0	0	5
NLRP5	126206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56544918	56544918	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRP5-162	NM_153447	exon9	c.G2458A	p.A820T	AGAAATGCACAGA	.	137	126	192	0	.	0	0	0	0	0	5
ZNF135	7694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58579725	58579725	+	Missense_Mutation	SNP	C	C	T	rs138910447	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF135-91	NM_007134	exon4	c.C1945T	p.R649W	CAGCACCGGAGGA	.	106	98	195	0	C|1.000;T|0.000	4	0	4	0	0	5
ZNF324	25799	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	58982784	58982784	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF324-90	NM_014347	exon4	c.G925A	p.G309S	CACAGCGGCGAGA	.	304	252	158	1	.	4	2	2	0	0	4
MPV17	4358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27535925	27535925	+	Missense_Mutation	SNP	C	C	T	rs140992482	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MPV17-90	NM_002437	exon3	c.G122A	p.R41Q	AGACCCCGCCTCT	.	175	154	247	1	C|1.000;T|0.000	15	5	10	0	0	5
MSH6	2956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	48026605	48026605	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MSH6-3014	NM_000179	exon4	c.C1483T	p.R495X	GAGGCACGATGTA	.	165	151	258	0	.	2	0	2	0	0	4
PSME4	23198	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	54159045	54159045	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PSME4-275	NM_014614	exon10	c.C1243A	p.L415I	CTTCTAGACTACC	.	164	147	261	2	.	1	0	1	0	0	3
GMCL1	64395	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	70096886	70096886	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GMCL1-93	NM_178439	exon12	c.C1254T	p.F418F	CGGCTTCGACCTA	.	70	66	84	1	.	12	0	12	0	0	3
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84899458	84899458	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH6-69	NM_001370	exon40	c.G6462A	p.P2154P	AGCACCGGGAAAC	.	45	37	51	0	.	0	0	0	0	0	5
BCL2L11	10018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	111921764	111921764	+	Nonsense_Mutation	SNP	C	C	T	rs138706378	byfrequency;alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BCL2L11-1083	NM_138621	exon4	c.C553T	p.R185X	ATCTTACGACTGT	.	113	99	131	0	C|0.999;G|0.001	2	0	2	0	0	5
IL1RN	3557	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113885278	113885278	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IL1RN-92	NM_173841	exon3	c.G86A	p.R29Q	TCTGCCGACCCTC	.	57	50	62	1	.	0	0	0	0	0	4
NCKAP5	344148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	133541906	133541906	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_207363	exon14	c.T2478A	p.P826P	AGATGAAGGGAGT	.	116	111	157	1	.	1	0	1	0	0	4
DLX1	1745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	172951487	172951487	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DLX1-90	NM_178120	exon2	c.T419C	p.L140S	TGCAGTTGCAGGC	.	107	97	149	0	.	0	0	0	0	0	5
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179592882	179592882	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_001267550	exon67	c.A19669G	p.N6557D	CTACATTTGACAC	.	98	92	119	0	.	0	0	0	0	0	5
COL5A2	1290	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	189948711	189948711	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL5A2-92	NM_000393	exon12	c.C851T	p.P284L	CTTACCGGAGATC	.	35	34	42	1	.	0	0	0	0	0	4
MFSD6	54842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	191301884	191301884	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MFSD6-92	NM_017694	exon3	c.G1129A	p.V377I	TTCGGCGTTCTCA	.	159	131	221	0	.	28	2	26	0	0	5
SLC4A11	83959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3210042	3210042	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC4A11-91	NM_001174090	exon15	c.C1928T	p.A643V	AGCACCGCGATGG	.	127	27	135	0	.	1	1	0	0	0	5
SIGLEC1	6614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3673211	3673211	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SIGLEC1-167	NM_023068	exon15	c.C3987A	p.A1329A	GCCCTGGGCATCC	.	56	23	69	0	.	0	0	0	0	0	5
PLCB1	23236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	8609053	8609053	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLCB1-297	NM_015192	exon4	c.T359G	p.F120C	ATCTCGTGGCTTT	.	219	83	181	0	.	2	2	0	0	0	5
ISM1	140862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	13269302	13269302	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ISM1-68	NM_080826	exon4	c.G759A	p.S253S	AGAATCGAGGACC	.	233	104	153	0	.	9	6	3	0	0	5
RRBP1	6238	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	17622479	17622479	+	Missense_Mutation	SNP	G	G	A	rs146531264	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RRBP1-92	NM_004587	exon5	c.C848T	p.A283V	ACAGCCGCATCTT	.	151	14	142	0	G|0.999;A|0.001	304	279	24	1	0	3
RBBP9	10741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	18471080	18471080	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBBP9-227	NM_006606	exon4	c.C293T	p.A98V	GTGTACGCAGACA	.	248	116	223	0	.	16	7	9	0	0	5
CST9	128822	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23586287	23586287	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CST9-91	NM_001008693	exon1	c.G215A	p.R72H	AGGACGCGCAACA	.	253	107	182	1	.	0	0	0	0	0	4
NCOA6	23054	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33329666	33329666	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NCOA6-292	NM_014071	exon11	c.C4394T	p.S1465L	GGATCCGAAGGCT	.	212	113	175	1	.	49	24	25	0	0	4
ADA	100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43251246	43251246	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADA-653	NM_000022	exon9	c.G828A	p.T276T	ATGCTCCGTGTCC	.	199	84	155	0	.	7	5	2	0	0	5
ZBP1	81030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	56186832	56186832	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZBP1-228	NM_030776	exon6	c.C825T	p.H275H	GACGCCGTGGAGC	.	136	26	86	0	.	0	0	0	0	0	5
SLMO2	51012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	57611597	57611597	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLMO2-45	NM_016045	exon5	c.G394A	p.V132M	CTTTCACGGTAAT	.	236	105	158	0	.	50	28	22	0	0	4
SYCP2	10388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	58452496	58452496	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SYCP2-525	NM_014258	exon32	c.G3094A	p.E1032K	CTGATTCTGAATT	.	43	20	22	0	.	4	2	2	0	0	5
CDH4	1002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60348149	60348149	+	Missense_Mutation	SNP	G	G	A	rs143400273	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH4-282	NM_001794	exon4	c.G487A	p.G163R	GCCAACGGGCTGA	.	298	145	124	0	G|0.999;A|0.001	9	5	4	0	0	5
RTEL1	51750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62297419	62297419	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RTEL1-44	NM_032957	exon7	c.G673A	p.G225R	AAGAGCGGAAGCA	.	145	65	101	0	.	0	0	0	0	0	5
RTEL1	51750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62309673	62309673	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RTEL1-44	NM_032957	exon12	c.C1083T	p.D361D	TGGAGACGACAGC	.	113	37	80	0	.	19	9	10	0	0	5
GRIK1	2897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	31062246	31062246	+	Missense_Mutation	SNP	C	C	T	rs142436130	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRIK1-137	NM_175611	exon3	c.G346A	p.V116I	CACTGACGGAGGA	.	114	14	163	0	C|1.000;T|0.000	0	0	0	0	0	4
TUBA8	51807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18609364	18609364	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TUBA8-90	NM_018943	exon4	c.G619A	p.E207K	GACAACGAAGCCA	.	144	123	281	0	.	2	0	2	0	0	5
DGCR8	54487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	20073745	20073745	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DGCR8-90	NM_001190326	exon2	c.A259G	p.I87V	CTCCTCATAGACC	.	84	12	111	0	.	3	3	0	0	0	4
PIWIL3	440822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	25150089	25150089	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIWIL3-93	NM_001008496	exon8	c.G869A	p.R290Q	TCTATTCGGAGCA	.	104	96	114	1	.	0	0	0	0	0	4
SFI1	9814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31971289	31971289	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SFI1-90	NM_001007467	exon10	c.G995A	p.R332Q	GGGAGCGGAGGGA	.	119	28	136	0	.	2	2	0	0	0	5
PPP6R2	9701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50845169	50845169	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPP6R2-92	NM_001242898	exon4	c.C279T	p.S93S	GATCAGCGACCGC	.	48	18	92	0	.	17	10	7	0	0	5
SUSD5	26032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	33216542	33216542	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SUSD5-24	NM_015551	exon4	c.C434T	p.S145L	GGGAACGAAGGCG	.	119	103	168	0	.	1	0	1	0	0	5
TRANK1	9881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	36873092	36873092	+	Missense_Mutation	SNP	C	C	T	rs200132397	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRANK1-24	NM_014831	exon21	c.G7850A	p.R2617H	AGGCCACGGACTA	.	177	161	248	2	.	4	0	4	0	0	4
DLEC1	9940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38080909	38080909	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DLEC1-161	NM_007337	exon1	c.C193T	p.R65C	CCCCGCCGCCTCA	.	168	156	118	0	.	0	0	0	0	0	5
PTPN23	25930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47453643	47453643	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPN23-227	NM_015466	exon22	c.A4133G	p.Y1378C	CACATTACCTGCA	.	113	102	139	0	.	22	3	19	0	0	5
AMT	275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49459642	49459642	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AMT-91	NM_001164712	exon2	c.G153A	p.A51A	CGCAAACGCCACC	.	128	112	238	1	.	1	0	1	0	0	5
SEMA3F	6405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50211681	50211681	+	Silent	SNP	C	C	T	rs200273983	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEMA3F-279	NM_004186	exon5	c.C354T	p.F118F	GAACTTCGTCAGG	.	240	210	367	1	C|0.999;T|0.001	6	5	1	0	0	4
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52425313	52425313	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH1-67	NM_015512	exon62	c.A9860G	p.D3287G	AGCTAGACCCAGC	.	145	131	253	1	.	6	0	6	0	0	5
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52536666	52536666	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STAB1-139	NM_015136	exon6	c.G506A	p.G169E	TGCACGGAGTGTG	.	115	99	145	0	.	0	0	0	0	0	5
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52553340	52553340	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STAB1-139	NM_015136	exon49	c.G5095A	p.G1699S	GTGAACGGCATCC	.	161	152	243	0	.	4	4	0	0	0	5
ITIH1	3697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52820426	52820426	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITIH1-93	NM_002215	exon13	c.C1709T	p.T570I	ACCTCACCATCCA	.	184	177	300	0	.	0	0	0	0	0	5
PRICKLE2	166336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	64085464	64085464	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRICKLE2-95	NM_198859	exon8	c.C1798T	p.R600W	CGCTCCGGAACTG	.	138	123	228	0	.	1	0	1	0	0	4
FILIP1L	11259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	99643213	99643213	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FILIP1L-45	NM_182909	exon4	c.C466T	p.R156X	GGATTCGTCTGTA	.	95	81	124	0	.	0	0	0	0	0	5
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108174589	108174589	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYH15-73	NM_014981	exon21	c.C2316G	p.I772M	CTTAGTGATTCCA	.	90	84	122	0	.	0	0	0	0	0	5
ZBTB20	26137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	114070578	114070578	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZBTB20-95	NM_001164342	exon4	c.G347A	p.R116H	TGTGCGCGCAGCA	.	166	149	236	0	.	0	0	0	0	0	5
SLC12A8	84561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	124854609	124854609	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC12A8-22	NM_024628	exon6	c.T640A	p.Y214N	GTGAATATCCAAT	.	87	79	140	0	.	1	0	1	0	0	5
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	130124438	130124438	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_153264	exon14	c.C4288T	p.R1430X	GGAGTACGAGGAG	.	159	138	309	1	.	0	0	0	0	0	4
ARMC8	25852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	137942520	137942520	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARMC8-90	NM_001267041	exon5	c.G380A	p.R127Q	GCCTCCGATGCCT	.	51	39	73	1	.	9	0	9	0	0	4
PLS1	5357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142408558	142408558	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLS1-91	NM_001172312	exon10	c.T1080A	p.N360K	AGGCAATCCTAAA	.	61	57	90	0	.	0	0	0	0	0	5
MAEA	10296	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1305792	1305792	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAEA-91	NM_005882	exon2	c.G95A	p.R32H	ACAAACGCTTTCG	.	392	178	375	2	.	36	15	21	0	0	4
LETM1	3954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1836604	1836604	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LETM1-90	NM_012318	exon5	c.G844A	p.A282T	TGGTGGCGCTGCC	.	163	71	163	0	.	26	17	9	0	0	5
ANAPC4	29945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	25419944	25419944	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANAPC4-293	NM_013367	exon29	c.C2367T	p.A789A	TGCTGCCGCTTTA	.	162	66	104	0	.	25	12	13	0	0	5
COL25A1	84570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	109810390	109810390	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL25A1-92	NM_198721	exon17	c.G962A	p.R321H	CCTGGACGACCAG	.	100	42	67	0	.	0	0	0	0	0	5
LARP7	51574	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	113570694	113570694	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LARP7-93	NM_001267039	exon11	c.C1167T	p.S389S	TAGGAGCGAATGG	.	261	26	175	0	.	0	0	0	0	0	3
FABP2	2169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	120240719	120240719	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FABP2-91	NM_000134	exon3	c.G320A	p.R107Q	ATTTCTCGGACAG	.	76	29	63	0	.	35	7	28	0	0	5
IRF2	3660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	185340688	185340688	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IRF2-91	NM_002199	exon3	c.C122T	p.A41V	CTAGCCGCATGCA	.	85	35	67	0	.	33	19	14	0	0	5
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	187629666	187629666	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAT1-34	NM_005245	exon2	c.C1316A	p.T439K	CTTGTTGTTACTT	.	186	95	114	0	.	0	0	0	0	0	5
SLC12A7	10723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1089183	1089183	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC12A7-138	NM_006598	exon4	c.G403A	p.V135I	GGATGACGCCCAG	.	267	131	206	1	.	1	0	1	0	0	4
PARP8	79668	ucsc.edu;bcgsc.ca;mdanderson.org	37	5	50090917	50090917	+	Missense_Mutation	SNP	G	G	A	rs201467874	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PARP8-586	NM_001178056	exon12	c.G1094A	p.R365H	TGAACCGTCCTTG	.	302	143	227	2	G|0.999;A|0.000	38	20	17	1	0	3
SGTB	54557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	65000123	65000123	+	Silent	SNP	T	T	G	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SGTB-90	NM_019072	exon5	c.A357C	p.A119A	GTAAACTGCATTA	.	86	43	59	0	.	0	0	0	0	0	5
GCNT4	51301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74325230	74325230	+	Silent	SNP	C	C	T	rs148761969	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GCNT4-93	NM_016591	exon1	c.G633A	p.S211S	AAGGTCCGACAAG	.	137	74	82	0	C|0.999;T|0.001	3	2	1	0	0	5
CKMT2	1160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	80548557	80548557	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CKMT2-90	NM_001825	exon4	c.G196A	p.E66K	ATGGCCGAGTGCC	.	293	127	239	0	.	6	1	5	0	0	5
LMNB1	4001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	126154661	126154661	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LMNB1-226	NM_005573	exon6	c.T987C	p.A329A	GCTTGCTAAAGAA	.	362	172	257	1	.	25	18	7	0	0	5
PCDHB11	56125	ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140581614	140581614	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB11-96	NM_018931	exon1	c.C2267T	p.T756M	GTCTGACGGGAGG	.	304	121	197	2	.	1	1	0	0	0	3
TCOF1	6949	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149755751	149755751	+	Missense_Mutation	SNP	G	G	A	rs146735293	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TCOF1-155	NM_001135243	exon13	c.G2000A	p.R667Q	CCCCCCGGAAAGC	.	213	112	115	1	G|0.998;A|0.002	26	13	13	0	0	4
RNF145	153830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	158595954	158595954	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RNF145-525	NM_001199380	exon8	c.G1138A	p.V380I	AAGCTACGACAAT	.	516	222	382	0	.	40	24	16	0	0	5
GABRB2	2561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	160757958	160757958	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GABRB2-91	NM_021911	exon9	c.C1009T	p.R337C	TTTGGCGTTGGGG	.	209	89	107	0	.	3	2	1	0	0	5
TENM2	57451	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	167674406	167674406	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001122679	exon27	c.C6435T	p.F2145F	ACACTTCGACACC	.	191	85	123	1	.	0	0	0	0	0	4
PDLIM7	9260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176916510	176916510	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDLIM7-153	NM_005451	exon9	c.G753A	p.T251T	CGTGGGCGTGGCC	.	231	118	97	0	.	0	0	0	0	0	5
FAM193B	54540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176951844	176951844	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001190946	exon6	c.G1638A	p.T546T	TTGTAACGTGTGG	.	102	40	47	0	.	31	17	14	0	0	5
MAML1	9794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179193193	179193193	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAML1-848	NM_014757	exon2	c.C1182A	p.S394S	GCTGTCCTCTGCC	.	130	64	80	0	.	22	15	7	0	0	5
JARID2	3720	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	15501341	15501341	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	JARID2-228	NM_004973	exon8	c.C2149T	p.R717W	GAGCACCGGCGGC	.	190	176	245	2	.	1	1	0	0	0	4
GPANK1	7918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31630341	31630341	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPANK1-91	NM_001199238	exon4	c.C773T	p.P258L	AAGCCCGGGCTGG	.	76	65	92	0	.	34	2	32	0	0	5
TREML2	79865	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41165918	41165918	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TREML2-91	NM_024807	exon2	c.G305A	p.R102Q	CAGTATCGGCCTG	.	61	41	121	1	.	0	0	0	0	0	4
SLC35B2	347734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44222512	44222512	+	Silent	SNP	G	G	A	rs146186426	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC35B2-91	NM_178148	exon4	c.C1230T	p.Y410Y	CCGCGCGTAGACT	.	113	103	140	0	G|1.000;A|0.000	109	1	108	0	0	5
BEND3	57673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	107390834	107390834	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BEND3-71	NM_001080450	exon5	c.C1561T	p.R521W	CCGGCCGCTCGCC	.	28	25	64	0	.	2	0	2	0	0	5
TULP4	56995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	158900783	158900783	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TULP4-91	NM_020245	exon7	c.C1027T	p.R343C	TGCCAGCGCCCCA	.	56	52	106	0	.	0	0	0	0	0	5
HEATR2	54919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	780485	780485	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HEATR2-69	NM_017802	exon3	c.C810T	p.G270G	GGTGGGCGGCTGG	.	105	80	147	0	.	7	1	6	0	0	5
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4169611	4169611	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SDK1-138	NM_152744	exon27	c.G4011A	p.S1337S	GCAGTCGGCCCTG	.	92	86	116	0	.	0	0	0	0	0	5
PMS2	5395	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	6042243	6042243	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PMS2-1083	NM_000535	exon5	c.C378T	p.H126H	CGATGCGTGGCAG	.	72	8	107	1	.	13	13	0	0	0	3
HECW1	23072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	43351432	43351432	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HECW1-669	NM_015052	exon4	c.G98A	p.R33H	GCCGACGCCGGTG	.	84	8	97	0	.	0	0	0	0	0	4
PHKG1	5260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	56149873	56149873	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHKG1-424	NM_001258459	exon8	c.C717T	p.Y239Y	TTTCCCGTAGCCC	.	73	63	119	0	.	4	0	4	0	0	5
GTPBP10	85865	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	89982177	89982177	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GTPBP10-68	NM_001042717	exon2	c.C81T	p.S27S	AGGATCCGGTGGA	.	102	94	165	2	.	1	0	1	0	0	3
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	131913155	131913155	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLXNA4-91	NM_020911	exon6	c.C1678T	p.R560W	TCAGCCGGACACA	.	129	115	219	1	.	1	0	1	0	0	4
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151864452	151864452	+	Missense_Mutation	SNP	G	G	A	rs145072739	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLL3-1398	NM_170606	exon42	c.C9529T	p.R3177C	GCTTACGCTGTGA	.	31	30	35	0	G|1.000;A|0.000	0	0	0	0	0	5
SGK223	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	8185743	8185743	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001080826	exon4	c.C2549T	p.S850L	GTTTCCGAGTGGC	.	142	58	133	0	.	2	2	0	0	0	5
SOX7	83595	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	10583913	10583913	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SOX7-522	NM_031439	exon2	c.G502A	p.G168S	CAGTGCCGGGGGA	.	75	39	13	0	.	0	0	0	0	0	3
DLC1	10395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	12950218	12950218	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DLC1-657	NM_182643	exon13	c.G3643A	p.V1215I	CTTTTACGGCTGC	.	226	112	203	0	.	5	3	2	0	0	5
SH2D4A	63898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	19221709	19221709	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SH2D4A-90	NM_022071	exon7	c.G833A	p.R278H	CCTTGCGTGTTCC	.	121	60	85	0	.	13	9	4	0	0	5
ENTPD4	9583	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	23302032	23302032	+	Missense_Mutation	SNP	G	G	A	rs200123530	unknown;alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ENTPD4-92	NM_004901	exon5	c.C500T	p.A167V	TGTTTTGCCCGTG	.	134	70	101	1	G|0.999;T|0.000	13	10	3	0	0	3
UBE2V2	7336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	48955657	48955657	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBE2V2-659	NM_003350	exon2	c.C81T	p.G27G	AGTAGGCGACGGT	.	191	13	148	0	.	38	37	1	0	0	3
YTHDF3	253943	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	64099263	64099263	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	.	.	.	.	AGTGCAGCACCTA	.	240	126	182	0	.	16	5	11	0	0	4
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	68939483	68939483	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PREX2-390	NM_025170	exon5	c.G468T	p.K156N	ACGGAAGAACACA	.	205	96	143	0	.	0	0	0	0	0	5
OSR2	116039	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	99961683	99961683	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OSR2-1	NM_053001	exon2	c.C503T	p.T168M	CCAAAACGAAAAA	.	285	138	182	1	.	26	15	11	0	0	4
RIMS2	9699	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	105263855	105263855	+	Missense_Mutation	SNP	G	G	A	rs200286153	unknown;alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RIMS2-279	NM_001100117	exon24	c.G3857A	p.R1286H	ATGGCCGCATGGA	.	150	60	98	1	G|1.000;T|0.000	9	5	3	1	0	4
C8orf31	286122	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144126154	144126154	+	Missense_Mutation	SNP	G	G	A	rs74447754	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C8orf31-91	NM_173687	exon4	c.G275A	p.R92Q	GGGCACGAGACCA	.	152	74	127	0	G|0.990;A|0.010	27	12	15	0	0	4
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	144940488	144940488	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPPK1-25	NM_031308	exon1	c.G6934A	p.D2312N	AGGGGTCGGTGTA	.	452	36	229	0	.	0	0	0	0	0	3
PLEC	5339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144994967	144994967	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLEC-141	NM_201380	exon32	c.C9433T	p.R3145X	CGTCTCGCACAGA	.	164	82	83	0	.	41	20	21	0	0	5
LRRC14	9684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145745151	145745151	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC14-90	NM_001272036	exon3	c.G42A	p.Q14Q	GCTGCAGTGCCAG	.	198	105	183	0	.	14	7	7	0	0	5
FBXO10	26267	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	37516027	37516027	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXO10-637	NM_012166	exon10	c.G2570A	p.R857H	TTGGCACGGCCCC	.	122	109	161	0	.	5	1	4	0	0	4
ANXA1	301	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	75774284	75774284	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANXA1-650	NM_000700	exon4	c.G215A	p.R72Q	CTAAGCGAAACAA	.	81	75	194	2	.	124	6	118	0	0	3
SPATA31E1	286234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	90503505	90503505	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_178828	exon4	c.G4103A	p.R1368H	AAGAACGTAGCAG	.	113	100	155	0	.	0	0	0	0	0	5
GABBR2	9568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	101258725	101258725	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GABBR2-518	NM_005458	exon4	c.C702T	p.N234N	GGGATCGTTGGAG	.	105	98	154	1	.	0	0	0	0	0	5
GPR144	347088	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	127239354	127239354	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001161808	exon20	c.G2867A	p.R956H	CCCCCCGTCACCC	.	14	11	19	0	.	0	0	0	0	0	4
SEC16A	9919	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139354235	139354235	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_014866	exon15	c.C5165T	p.T1722M	GCCATCGTCCTGG	.	47	41	94	1	.	8	0	8	0	0	3
C9orf172	389813	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	139739046	139739046	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001080482	exon1	c.C180T	p.D60D	GCTGGACGGGCCG	.	34	30	17	0	.	3	0	3	0	0	4
MXRA5	25878	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	3228791	3228791	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MXRA5-136	NM_015419	exon7	c.G7453A	p.V2485I	GCAGAACCACACC	.	558	314	398	2	.	0	0	0	0	0	3
CDKL5	6792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	18525233	18525233	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDKL5-838	NM_003159	exon2	c.T17G	p.I6S	CTAACATTGGTAA	.	277	134	201	0	.	0	0	0	0	0	5
NYX	60506	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	41333840	41333840	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NYX-108	NM_022567	exon2	c.C1134T	p.F378F	GACCTTCGGGCGC	.	210	113	65	0	.	0	0	0	0	0	4
RBM10	8241	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	47039883	47039883	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBM10-626	NM_001204468	exon12	c.C1421T	p.A474V	TTGCTGCGGCCCA	.	368	74	323	1	.	27	15	12	0	0	3
GATA1	2623	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48649679	48649679	+	Missense_Mutation	SNP	G	G	A	rs150572851	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GATA1-1315	NM_002049	exon2	c.G163A	p.A55T	GCCACCGCTGCAG	.	160	82	134	1	G|0.999;A|0.001	5	5	0	0	0	4
TSPYL2	64061	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53112257	53112257	+	Missense_Mutation	SNP	C	C	T	rs192279149	by1000genomes;alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TSPYL2-130	NM_022117	exon1	c.C577T	p.R193W	CGGCGGCGGAGGA	.	481	230	385	1	C|0.999;A|0.001	32	32	0	0	0	4
TRO	7216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54951477	54951477	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRO-131	NM_016157	exon6	c.A1461G	p.E487E	CATTGAACGAGCA	.	672	302	598	2	.	8	0	8	0	0	5
TCEAL2	140597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101382400	101382400	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TCEAL2-130	NM_080390	exon3	c.G598T	p.D200Y	TTACAGGACCCCT	.	233	99	106	0	.	0	0	0	0	0	5
COL4A5	1287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107812000	107812000	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL4A5-133	NM_000495	exon6	c.C333T	p.G111G	GCCAGGCCACGAT	.	387	194	212	0	.	0	0	0	0	0	5
RBMXL3	139804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	114425196	114425196	+	Missense_Mutation	SNP	G	G	A	rs12399211	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145346	exon1	c.G1192A	p.D398N	TCGCCCGACGCCC	.	423	266	55	0	G|0.483;A|0.517	0	0	0	0	0	4
SLC6A14	11254	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	115582608	115582608	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC6A14-133	NM_007231	exon8	c.T932C	p.V311A	TATAGGTATGGAA	.	87	39	57	1	.	0	0	0	0	0	3
BCORL1	63035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129190051	129190051	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BCORL1-294	NM_021946	exon12	c.C5076T	p.Y1692Y	GCGGTACGAGCCA	.	199	82	121	0	.	3	1	2	0	0	5
MAMLD1	10046	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	149639048	149639048	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAMLD1-130	NM_005491	exon3	c.C1203T	p.P401P	GGGGCCCGCCATG	.	191	83	131	1	.	23	23	0	0	0	3
HAUS7	55559	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	152735950	152735950	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HAUS7-90	NM_017518	exon1	c.C96T	p.S32S	CACGCTGCTGTCG	.	338	151	177	1	.	24	24	0	0	0	3
FLNA	2316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153588004	153588004	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FLNA-599	NM_001456	exon24	c.C3990T	p.S1330S	GTCCACGGAGTGC	.	133	71	85	0	.	0	0	0	0	0	5
OBSCN	84033	bcgsc.ca;mdanderson.org	37	1	228503565	228503565	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OBSCN-403	NM_001271223	exon61	c.C15901T	p.R5301W	GTGGTGCGGGGGC	.	64	53	45	1	.	2	0	2	0	0	2
SORL1	6653	ucsc.edu;bcgsc.ca	37	11	121458770	121458770	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SORL1-228	NM_003105	exon28	c.C3856T	p.R1286C	AAGAACCGCCAGC	.	53	19	109	2	.	4	2	2	0	0	2
VPS37B	79720	broad.mit.edu;bcgsc.ca	37	12	123351799	123351799	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VPS37B-90	NM_024667	exon4	c.C722T	p.P241L	AGGGGCGGGCACT	.	73	45	62	1	.	21	3	18	0	0	2
IRF9	10379	hgsc.bcm.edu;bcgsc.ca	37	14	24631381	24631381	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IRF9-69	NM_006084	exon2	c.C28T	p.R10X	TGCACCCGAAAAC	.	167	151	267	2	.	24	0	24	0	0	2
ZNF205	7755	broad.mit.edu	37	16	3169354	3169354	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF205-90	NM_003456	exon7	c.C693T	p.G231G	GTGGGGCGTCCCG	.	97	5	51	0	.	25	23	2	0	0	1
COG8	84342	bcgsc.ca;mdanderson.org	37	16	69373210	69373210	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COG8-91	NM_032382	exon1	c.G246A	p.L82L	GAAGGCCAAGTCG	.	72	38	30	1	.	11	3	8	0	0	2
RRP1B	23076	ucsc.edu;bcgsc.ca	37	21	45107797	45107797	+	Silent	SNP	G	G	A	rs143773984	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RRP1B-91	NM_015056	exon13	c.G1542A	p.P514P	GTCCCCGACAGGT	.	105	94	175	2	G|1.000;A|0.000	7	0	7	0	0	2
SRP72	6731	bcgsc.ca;mdanderson.org	37	4	57350950	57350950	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SRP72-116	NM_006947	exon10	c.G1006A	p.E336K	AGTCCCGAGCATC	.	72	36	51	1	.	37	21	16	0	0	2
TESK1	7016	bcgsc.ca	37	9	35609536	35609536	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TESK1-641	NM_006285	exon10	c.C1678T	p.R560W	GCTCCCCGGGAGC	.	44	40	28	1	.	22	1	21	0	0	1
SLC2A5	6518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	9118302	9118302	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC2A5-517	NM_003039	exon2	c.C41T	p.T14M	ACAAGCGTCAGCC	.	242	92	321	1	.	0	0	0	0	0	5
PTCHD2	57540	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11574461	11574461	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTCHD2-209	NM_020780	exon4	c.T1331C	p.L444P	AGGTTCTCTATGG	.	50	21	90	1	.	0	0	0	0	0	4
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19455563	19455563	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBR4-612	NM_020765	exon61	c.A8912T	p.H2971L	ACCATGTGCAGCC	.	88	30	131	0	.	0	0	0	0	0	5
PRDX1	5052	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	45980288	45980290	+	In_Frame_Del	DEL	ATC	ATC	-	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	ATC	ATC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRDX1-514	NM_181696	exon5	c.403_405del	p.135_135del	ACCCTTATCATCA	.	107	35	169	0	.	0	0	0	0	0	3
NTNG1	22854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	107691233	107691233	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NTNG1-140	NM_001113228	exon2	c.C18A	p.F6L	AAGATTCCTGTCG	.	119	55	145	0	.	0	0	0	0	0	5
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150532560	150532560	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTSL4-92	NM_019032	exon19	c.C3113T	p.P1038L	GCTCTCCACATTG	.	262	47	137	0	.	2	2	0	0	0	5
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158632609	158632609	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPTA1-142	NM_003126	exon17	c.G2347C	p.A783P	GGGTGGCCAGTGG	.	209	44	150	0	.	0	0	0	0	0	5
DUSP12	11266	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161722196	161722196	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DUSP12-226	NM_007240	exon4	c.C616T	p.P206S	GTTGACCCAACTA	.	319	135	261	2	.	20	13	7	0	0	3
PTPN7	5778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	202122941	202122941	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPN7-227	NM_002832	exon7	c.C944A	p.T315K	TCTTCTGTGGGCC	.	144	22	100	0	.	0	0	0	0	0	4
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	210857405	210857405	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNH1-94	NM_172362	exon11	c.A2188C	p.I730L	GCAAGATCAGGGG	.	45	10	22	0	.	0	0	0	0	0	4
USH2A	7399	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	215821063	215821063	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USH2A-115	NM_206933	exon67	c.C14592A	p.L4864L	GAATTGGAGTTCA	.	50	10	29	0	.	0	0	0	0	0	3
TRIM11	81559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228582932	228582932	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRIM11-658	NM_145214	exon6	c.A881G	p.D294G	GCGGTGTCCGGGT	.	43	9	25	0	.	30	20	10	0	0	4
HSPA14	51182	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	14909858	14909859	+	Frame_Shift_Del	DEL	TA	TA	-	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	TA	TA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HSPA14-291	NM_016299	exon12	c.1330_1331del	p.444_444del	GAACTCTATGAGT	.	158	60	120	0	.	0	0	0	0	0	3
OLAH	55301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	15103749	15103749	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OLAH-68	NM_018324	exon5	c.G349C	p.E117Q	GGAAGAGAAAGCA	.	150	35	144	0	.	0	0	0	0	0	5
FRMPD2	143162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	49440201	49440201	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FRMPD2-153	NM_001018071	exon10	c.C1125T	p.A375A	GAGGTTGGCAAAG	.	138	47	124	0	.	0	0	0	0	0	5
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61835910	61835910	+	Missense_Mutation	SNP	T	T	A	rs201650334	unknown;alternate_allele	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANK3-107	NM_020987	exon37	c.A4729T	p.M1577L	AAGACATTGTCCG	.	340	72	255	0	.	0	0	0	0	0	5
DCDC1	341019	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	31349747	31349747	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DCDC1-91	NM_181807	exon3	c.A81G	p.V27V	CTGTAATACTTCC	.	50	6	59	0	.	0	0	0	0	0	3
OR4C11	219429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55371204	55371204	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4C11-69	NM_001004700	exon1	c.T646C	p.Y216H	CAATATATGAAAT	.	95	35	96	0	.	0	0	0	0	0	5
RAB6A	5870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73441848	73441848	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAB6A-227	NM_002869	exon2	c.A91G	p.T31A	ATCTGGTGATCAA	.	227	60	226	0	.	9	4	5	0	0	5
TAF1D	79101	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	93471576	93471576	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAF1D-90	NM_024116	exon3	c.T158G	p.V53G	GTACGAACAAATT	.	79	42	69	1	.	45	23	22	0	0	4
MRE11A	4361	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94201026	94201026	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MRE11A-722	NM_005591	exon10	c.C1051T	p.R351C	CCAGACGTTCCCG	.	139	28	169	1	.	11	10	1	0	0	4
C12orf57	113246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7053766	7053766	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C12orf57-90	NM_138425	exon2	c.G180T	p.Q60H	CACGCAGATCCAG	.	358	93	248	0	.	193	171	22	0	0	4
PIK3C2G	5288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	18491453	18491453	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIK3C2G-1312	NM_004570	exon9	c.C1366T	p.L456L	AATGAACTAAGTC	.	139	29	192	0	.	0	0	0	0	0	5
SLCO1C1	53919	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	20864373	20864373	+	Missense_Mutation	SNP	C	C	T	rs181627657	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLCO1C1-97	NM_017435	exon5	c.C458T	p.P153L	TCTCTCCGTGTCT	.	109	36	120	1	C|0.999;T|0.000	0	0	0	0	0	4
ATF1	466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	51207830	51207830	+	Silent	SNP	T	T	C	rs186674535	unknown;alternate_allele	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATF1-685	NM_005171	exon5	c.T366C	p.S122S	GGCAAGTCCAGGC	.	302	75	189	0	T|0.999;G|0.000	32	25	7	0	0	4
OR6C2	341416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	55846356	55846356	+	Missense_Mutation	SNP	G	G	A	rs187562104	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR6C2-70	NM_054105	exon1	c.G359A	p.R120H	ATGACCGCTATGT	.	103	19	85	0	G|0.999;A|0.001	0	0	0	0	0	4
NABP2	79035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56622965	56622965	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_024068	exon7	c.G604A	p.G202S	AGTAACGGCAAAG	.	155	20	102	0	.	38	29	9	0	0	4
AVPR1A	552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	63544072	63544072	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AVPR1A-946	NM_000706	exon1	c.G545T	p.S182I	GGCGTGCTCAGCA	.	282	59	161	0	.	0	0	0	0	0	5
GAS6	2621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	114529971	114529971	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GAS6-650	NM_000820	exon12	c.A1475G	p.Y492C	TTACTGTAGTCCA	.	125	53	149	0	.	0	0	0	0	0	5
NPAS3	64067	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	33684463	33684463	+	Silent	SNP	T	T	C	rs138614075	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NPAS3-93	NM_001164749	exon3	c.T216C	p.Y72Y	GTTCTATGAATTG	.	97	30	141	1	T|1.000;C|0.000	0	0	0	0	0	3
ABCD4	5826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74763089	74763089	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCD4-292	NM_005050	exon5	c.G489T	p.K163N	GATGAGCTTGCTG	.	78	23	77	0	.	4	3	1	0	0	5
RORA	6095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	60797800	60797800	+	Silent	SNP	C	C	T	rs199818399	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RORA-290	NM_134260	exon7	c.G948A	p.S316S	CAGATGCGATTTA	.	99	31	109	0	.	18	12	6	0	0	4
IGDCC4	57722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65703500	65703500	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGDCC4-93	NM_020962	exon2	c.G279T	p.L93L	CAGCCACAGGGAA	.	195	62	157	0	.	0	0	0	0	0	5
SLC28A1	9154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	85438269	85438269	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC28A1-93	NM_201651	exon6	c.C376T	p.R126C	GGCCACCGCCTGC	.	151	40	122	0	.	0	0	0	0	0	5
MSLN	10232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	818658	818658	+	Silent	SNP	G	G	A	rs201197109	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MSLN-91	NM_013404	exon17	c.G1818A	p.S606S	CCTCTCGGGGACG	.	63	19	43	0	G|0.999;A|0.001	0	0	0	0	0	4
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18062646	18062646	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO15A-97	NM_016239	exon53	c.A9214G	p.T3072A	ATGGCCACCGACA	.	83	33	101	0	.	0	0	0	0	0	5
LASP1	3927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37070576	37070576	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LASP1-522	NM_006148	exon5	c.358-2A>C	.	CCTTGCAGATAAA	.	385	90	259	0	.	0	0	0	0	0	4
ARL4D	379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41477602	41477602	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARL4D-228	NM_001661	exon2	c.T502C	p.C168R	CAAGGCTGCAGCG	.	68	24	60	0	.	3	2	1	0	0	5
KANSL1	284058	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	44249233	44249233	+	Missense_Mutation	SNP	T	T	C	rs149661150	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001193466	exon2	c.A277G	p.K93E	ACTCCTTTGAGGG	.	206	54	216	1	T|1.000;C|0.000	7	6	1	0	0	3
EVPL	2125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74004100	74004100	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EVPL-93	NM_001988	exon22	c.C5186T	p.S1729L	GGCCCCGAGGTGG	.	119	33	81	0	.	0	0	0	0	0	5
PRAM1	84106	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	8555234	8555236	+	In_Frame_Del	DEL	CAT	CAT	-	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	CAT	CAT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_032152	exon9	c.1961_1963del	p.654_655del	AGTCGACATCATC	.	185	35	126	0	.	0	0	0	0	0	3
NACC1	112939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13246265	13246265	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NACC1-90	NM_052876	exon2	c.C244G	p.L82V	CAGATCCTCAGCT	.	344	51	202	0	.	14	9	5	0	0	5
JAK3	3718	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17954268	17954268	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	JAK3-2418	NM_000215	exon4	c.A341G	p.K114R	TGGCACTTCTCCA	.	350	57	212	0	.	0	0	0	0	0	4
NUMBL	9253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41175846	41175846	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NUMBL-637	NM_004756	exon9	c.C1116T	p.A372A	AGCACTGGCAAAA	.	175	34	104	0	.	6	6	0	0	0	5
PSG9	5678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43772123	43772123	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PSG9-92	NM_002784	exon2	c.G243A	p.S81S	TATATACGATATA	.	167	28	161	0	.	0	0	0	0	0	5
PNMAL2	57469	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	46997223	46997223	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PNMAL2-1	NM_020709	exon1	c.C1500T	p.N500N	CCCCTCGTTGGAC	.	83	11	76	0	.	7	5	2	0	0	3
TMEM143	55260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48866617	48866617	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM143-90	NM_018273	exon2	c.C195G	p.D65E	GGCCCAGTCGCGG	.	90	19	66	0	.	7	4	3	0	0	5
NAPSA	9476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50865552	50865552	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NAPSA-90	NM_004851	exon2	c.C102G	p.V34V	AGGTTGGACTCGA	.	82	17	67	0	.	0	0	0	0	0	5
ZNF616	90317	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	52620097	52620098	+	Frame_Shift_Del	DEL	TT	TT	-	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF616-90	NM_178523	exon4	c.319_320del	p.107_107del	TTATCATTTGTTT	.	196	37	136	0	.	0	0	0	0	0	3
ITSN2	50618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	24522788	24522788	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITSN2-539	NM_147152	exon12	c.A1334G	p.E445G	CGTCTTTCTATGT	.	75	19	55	0	.	0	0	0	0	0	5
CRIM1	51232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	36739479	36739479	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRIM1-118	NM_016441	exon10	c.G1722T	p.K574N	CAGTAAGATCTGC	.	290	82	205	0	.	0	0	0	0	0	5
CCDC142	84865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74701812	74701812	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC142-68	NM_032779	exon9	c.G2093C	p.S698T	AGTGTGCTTTGCA	.	117	19	89	0	.	8	7	1	0	0	4
DDX18	8886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	118575133	118575133	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DDX18-290	NM_006773	exon2	c.G199T	p.E67X	TTATCAGAAACTC	.	155	31	135	0	.	4	4	0	0	0	5
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	125285031	125285031	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTNAP5-524	NM_130773	exon10	c.C1644A	p.D548E	CAAAGACAGGTAA	.	97	23	108	0	.	0	0	0	0	0	5
ARHGAP15	55843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	144245049	144245049	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGAP15-653	NM_018460	exon9	c.A811C	p.K271Q	CAAGAAAAAGGAC	.	48	14	35	0	.	1	1	0	0	0	5
CYP20A1	57404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	204143326	204143326	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CYP20A1-90	NM_177538	exon7	c.A710G	p.N237S	TAAGGAACATCAT	.	342	62	313	0	.	19	13	6	0	0	4
VWC2L	402117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	215279234	215279234	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001080500	exon2	c.G317T	p.C106F	GATGCTGTCCTGA	.	112	33	80	0	.	0	0	0	0	0	5
ZNF142	7701	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219508012	219508012	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF142-137	NM_001105537	exon8	c.C3227T	p.S1076F	GGAGCAGAGTCCC	.	222	46	154	1	.	1	0	1	0	0	4
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230656613	230656613	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRIP12-572	NM_004238	exon28	c.G4159A	p.A1387T	TACCAGCTCTGCC	.	255	126	161	0	.	14	9	5	0	0	5
NMUR1	10316	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	232393591	232393591	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NMUR1-523	NM_006056	exon2	c.G141T	p.L47L	GAGTCTCAGTGCC	.	209	22	162	1	.	0	0	0	0	0	3
SLC4A11	83959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3214626	3214626	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC4A11-91	NM_001174090	exon6	c.C675T	p.I225I	CCCTTGGATGGTA	.	100	36	92	0	.	0	0	0	0	0	5
HNF4A	3172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43057001	43057001	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HNF4A-227	NM_178849	exon9	c.C1156A	p.H386N	CATGCCCACCACC	.	119	48	89	0	.	1	1	0	0	0	5
DSCAM	1826	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	41539177	41539177	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DSCAM-101	NM_001271534	exon16	c.A2986G	p.I996V	ATGATATAGGCTC	.	116	30	131	1	.	0	0	0	0	0	3
GOLGA4	2803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	37396592	37396592	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GOLGA4-93	NM_001172713	exon22	c.A6622C	p.T2208P	TTGTAGACCATGG	.	75	13	58	0	.	0	0	0	0	0	4
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	41266104	41266104	+	Missense_Mutation	SNP	G	G	T	rs28931589	bycluster	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTNNB1-24361	NM_001098209	exon3	c.G101T	p.G34V	ACTCTGGAATCCA	.	218	74	205	1	G|1.000;T|0.000	70	51	19	0	0	4
KIAA1407	57577	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	113697118	113697120	+	In_Frame_Del	DEL	TCT	TCT	-	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	TCT	TCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1407-92	NM_020817	exon16	c.2519_2521del	p.840_841del	TGAAAATCTTCTT	.	99	21	74	0	.	0	0	0	0	0	3
PLXND1	23129	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129290586	129290586	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLXND1-90	NM_015103	exon16	c.A3179G	p.N1060S	GTGAGGTTGCCGT	.	422	84	279	2	.	24	21	3	0	0	4
TMCC1	23023	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129370603	129370603	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMCC1-91	NM_001017395	exon6	c.G1683C	p.K561N	CTCCATCTTGGAG	.	82	17	78	1	.	23	17	5	0	1	4
RYK	6259	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	133896850	133896850	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RYK-1379	.	.	.	.	AATTCATGTAAGG	.	167	86	142	0	.	23	17	6	0	0	4
COPB2	9276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	139077931	139077931	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COPB2-92	NM_004766	exon19	c.T2393A	p.F798Y	CCAGGGAACAGGT	.	105	21	85	0	.	230	177	52	0	1	5
ZBTB38	253461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	141162487	141162487	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZBTB38-25	NM_001080412	exon8	c.A1257T	p.G419G	AAATGGAGGTTCA	.	171	48	138	0	.	0	0	0	0	0	5
IGF2BP2	10644	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	185407396	185407396	+	Missense_Mutation	SNP	C	C	G	rs148304949	unknown;alternate_allele	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGF2BP2-226	NM_001007225	exon6	c.G424C	p.G142R	GATGCCCGCTTAG	.	319	41	221	2	C|1.000;T|0.000	17	14	3	0	0	3
ARAP2	116984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	36130245	36130245	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARAP2-93	NM_015230	exon21	c.G3550C	p.D1184H	TCACATCTTCAAG	.	209	72	222	0	.	0	0	0	0	0	5
KIAA1211	57482	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57180955	57180955	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1211-70	NM_020722	exon8	c.G1287T	p.R429S	GGAGAGGCTCGAA	.	220	52	221	1	.	0	0	0	0	0	4
LPHN3	23284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	62936396	62936396	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LPHN3-508	NM_015236	exon23	c.G4180A	p.V1394I	GAGAGTGTTACCA	.	72	31	114	0	.	8	6	2	0	0	5
ENAM	10117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71510144	71510144	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ENAM-93	NM_031889	exon9	c.G3001T	p.V1001F	GAACAAGTTTTTG	.	320	78	296	0	.	0	0	0	0	0	5
ANKRD50	57182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	125592202	125592202	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD50-90	NM_020337	exon4	c.T2230C	p.C744R	TATCACAATGATC	.	98	21	95	0	.	0	0	0	0	0	5
CTNND2	1501	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	11082866	11082866	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTNND2-293	NM_001332	exon16	c.C2730G	p.C910W	CACCGCGCACACC	.	135	38	116	1	.	0	0	0	0	0	4
DROSHA	29102	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	31526222	31526222	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DROSHA-227	NM_013235	exon4	c.G818T	p.R273I	GGTGTTCTCCCTC	.	205	62	136	1	.	0	0	0	0	0	4
ZNF131	7690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	43161463	43161463	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF131-90	NM_003432	exon5	c.G484C	p.E162Q	TCTGCAGAATCAG	.	243	67	214	0	.	3	3	0	0	0	5
ISL1	3670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	50680462	50680462	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ISL1-515	NM_002202	exon2	c.A116C	p.H39P	AATGGCATGCGGC	.	259	43	233	0	.	43	27	16	0	0	5
PCDHA7	56141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140215777	140215777	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHA7-94	NM_031852	exon1	c.C1809T	p.Y603Y	AGGCTACAACGCG	.	561	140	294	0	.	0	0	0	0	0	5
PCDHAC2	56134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140389355	140389355	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHAC2-26	NM_018899	exon4	c.A2857G	p.I953V	CCTGCAATCATCT	.	156	42	136	0	.	0	0	0	0	0	5
ADRA1B	147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	159344848	159344848	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADRA1B-522	NM_000679	exon1	c.C936T	p.I312I	CTTCATCGCTCTA	.	139	31	92	0	.	0	0	0	0	0	5
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169097591	169097591	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DOCK2-97	NM_004946	exon4	c.G214C	p.E72Q	ACAGTTGAGAAAA	.	97	19	68	0	.	0	0	0	0	0	5
PRPF4B	8899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	4037635	4037635	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRPF4B-1308	NM_003913	exon3	c.C1243T	p.R415X	AGAACACGACCTC	.	74	26	82	0	.	0	0	0	0	0	5
HIST1H3E	8353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26225400	26225400	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIST1H3E-68	NM_003532	exon1	c.G18C	p.Q6H	TAAGCAGACGGCT	.	310	88	300	0	.	0	0	0	0	0	5
EHMT2	10919	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31854777	31854777	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EHMT2-91	NM_006709	exon16	c.C2113T	p.L705L	CCTGCAGCAGCAC	.	61	15	52	1	.	0	0	0	0	0	4
DAAM2	23500	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	39867948	39867948	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DAAM2-228	NM_001201427	exon23	c.C2775A	p.S925S	CTTCTCCGAGCTG	.	108	33	92	1	.	12	6	6	0	0	4
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51774212	51774212	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKHD1-603	NM_170724	exon40	c.G6551T	p.G2184V	CTGGCTCCCATAT	.	177	52	165	0	.	0	0	0	0	0	5
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56336987	56336987	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DST-523	NM_015548	exon75	c.C14159T	p.S4720F	GACCCAGAGGGAT	.	182	56	178	0	.	20	16	4	0	0	5
SYNCRIP	10492	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	86324650	86324650	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SYNCRIP-92	NM_006372	exon11	c.A1696G	p.K566E	CAGCTTTGCGCTT	.	80	22	122	1	.	53	30	23	0	0	4
GABRR2	2570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	89978901	89978901	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GABRR2-68	NM_002043	exon4	c.C341G	p.A114G	GAGAAAGCTAGCC	.	154	41	161	0	.	1	1	0	0	0	5
RNF217	154214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	125404012	125404012	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RNF217-68	NM_152553	exon9	c.T797G	p.F266C	CTAGGTTTATTTG	.	71	18	59	0	.	0	0	0	0	0	5
BCLAF1	9774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	136582461	136582461	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BCLAF1-228	NM_014739	exon12	c.A2699T	p.D900V	TCTTCATCTTCAA	.	125	15	90	0	.	40	40	0	0	0	4
MTHFD1L	25902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	151281517	151281517	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MTHFD1L-292	NM_001242767	exon18	c.A1913T	p.D638V	CCAGTGACAAAAG	.	226	66	194	0	.	4	3	1	0	0	5
SCAF8	22828	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	155126521	155126522	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCAF8-91	NM_014892	exon9	c.882_883del	p.294_295del	AGAATCTGTGAAC	.	91	25	90	0	.	0	0	0	0	0	3
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	11485690	11485690	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	THSD7A-71	NM_015204	exon13	c.A3062G	p.H1021R	TTACCATGGCTGT	.	213	42	159	0	.	0	0	0	0	0	5
BZW2	28969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	16734601	16734601	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BZW2-92	NM_014038	exon8	c.G794A	p.R265H	AGGAGCGTCTTTC	.	63	15	51	0	.	99	75	24	0	0	5
SP4	6671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	21469550	21469550	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SP4-95	NM_003112	exon3	c.C767T	p.T256I	TAACAACCCTACC	.	261	60	193	0	.	0	0	0	0	0	5
KLHL7	55975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	23163401	23163401	+	Silent	SNP	G	G	A	rs150640353	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLHL7-90	NM_001172428	exon2	c.G126A	p.T42T	GAAAACGTTGTGT	.	98	18	103	0	G|1.000;A|0.000	1	0	1	0	0	4
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47897371	47897371	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKD1L1-145	NM_138295	exon28	c.T4422C	p.H1474H	GTTGTAATGAAGA	.	127	26	81	0	.	0	0	0	0	0	5
ABCA13	154664	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48327569	48327569	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCA13-521	NM_152701	exon20	c.G8849A	p.W2950X	CTTCCTGGACCAA	.	87	25	63	1	.	0	0	0	0	0	4
AASS	10157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	121769438	121769438	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AASS-92	NM_005763	exon3	c.T364C	p.L122L	CCAACAAGCCCAT	.	24	8	34	0	.	0	0	0	0	0	4
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2857496	2857496	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSMD1-86	NM_033225	exon53	c.A8187G	p.Q2729Q	AGGCGTTTGTCCA	.	129	21	137	0	.	0	0	0	0	0	5
LSM1	27257	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	38021296	38021298	+	In_Frame_Del	DEL	TTC	TTC	-	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	TTC	TTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LSM1-90	NM_014462	exon4	c.292_294del	p.98_98del	CCTTTGTTCTTCT	.	112	26	74	0	.	0	0	0	0	0	3
ANGPT1	284	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	108334173	108334173	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANGPT1-521	NM_001199859	exon4	c.G759A	p.E253E	CATCAGCTCCAGT	.	209	39	182	2	.	1	1	0	0	0	3
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113323220	113323220	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSMD3-1132	NM_198123	exon50	c.C7872A	p.V2624V	GGCAGGGACTGGC	.	127	30	88	0	.	0	0	0	0	0	5
SQLE	6713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	126019726	126019726	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SQLE-523	NM_003129	exon4	c.C819G	p.I273M	AGATATCAAGGTG	.	120	28	87	0	.	0	0	0	0	0	5
PLEC	5339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144998369	144998369	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLEC-141	NM_201380	exon31	c.A6139T	p.K2047X	GCCCCTTCTGCCG	.	110	40	29	0	.	4	4	0	0	0	5
MROH1	727957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	145247210	145247210	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001099281	exon9	c.856-2A>C	.	CGGAGCAGAGCCT	.	46	14	48	0	.	0	0	0	0	0	4
ARID3C	138715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34627865	34627865	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARID3C-91	NM_001017363	exon1	c.G147T	p.G49G	CTCAGCCCCAACA	.	92	51	71	0	.	0	0	0	0	0	5
TMEM2	23670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	74347358	74347358	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM2-92	NM_013390	exon7	c.A1472G	p.N491S	ACAATATTCCGGG	.	100	28	88	0	.	8	8	0	0	0	5
C9orf57	138240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	74674243	74674243	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001128618	exon2	c.G71A	p.R24K	ATCCTTCTCATTC	.	91	18	82	0	.	0	0	0	0	0	4
KIF27	55582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	86518378	86518378	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF27-523	NM_017576	exon4	c.A1055C	p.E352A	TCTGACTCGGGGC	.	32	6	35	0	.	0	0	0	0	0	4
PTPDC1	138639	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	96859984	96859984	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPDC1-227	NM_001253829	exon6	c.C1136T	p.S379F	CAATGTCTGAGAT	.	132	38	124	0	.	0	0	0	0	0	4
DFNB31	25861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	117169063	117169063	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DFNB31-95	NM_001173425	exon9	c.G1808C	p.G603A	TCTCTCCCCAGCT	.	151	30	105	0	.	10	8	2	0	0	5
TNC	3371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	117792645	117792645	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNC-517	NM_002160	exon24	c.C5960T	p.A1987V	AGCATTGCTTGGG	.	169	46	113	0	.	1	1	0	0	0	5
GLE1	2733	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131271255	131271255	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GLE1-22	NM_001499	exon2	c.C200G	p.S67C	CTCTGTCTGAGAC	.	331	58	215	1	.	9	8	0	1	0	4
GLE1	2733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131271329	131271329	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GLE1-22	NM_001499	exon2	c.A274G	p.S92G	GACGCAAGCTCTG	.	335	53	202	0	.	7	7	0	0	0	5
SAT1	6303	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	23803871	23803873	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SAT1-554	NM_002970	exon6	c.414_416del	p.138_139del	CATCAACTTCTAT	.	220	55	254	0	.	0	0	0	0	0	3
PCYT1B	9468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24593415	24593415	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCYT1B-130	NM_004845	exon7	c.G729C	p.Q243H	TTGGTTCTGGAAA	.	97	22	103	0	.	0	0	0	0	0	5
MAGEB6	158809	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	X	26212978	26212978	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAGEB6-133	NM_173523	exon2	c.G1015C	p.D339H	GTGCAAGATAAGT	.	456	102	367	0	.	0	0	0	0	0	3
GPR82	27197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	41587121	41587121	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR82-110	NM_080817	exon3	c.G842T	p.C281F	ATAACTGTCAGCA	.	164	31	164	0	.	0	0	0	0	0	5
SMC1A	8243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53410124	53410124	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMC1A-232	NM_006306	exon20	c.G3024A	p.Q1008Q	CAGCTTCTGCTGC	.	113	33	95	0	.	7	6	1	0	0	5
HUWE1	10075	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	53591626	53591626	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HUWE1-280	NM_031407	exon51	c.T6938G	p.V2313G	TCTGCCACCTCTG	.	128	21	132	2	.	0	0	0	0	0	3
SATL1	340562	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	84362926	84362926	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SATL1-175	NM_001012980	exon1	c.G1049T	p.G350V	GGTGGACCTGGTT	.	363	84	312	1	.	0	0	0	0	0	4
DACH2	117154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	85950071	85950071	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DACH2-136	NM_053281	exon5	c.G820T	p.A274S	CCATTTGCTGCAC	.	328	79	341	0	.	0	0	0	0	0	5
IRS4	8471	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	107979446	107979446	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IRS4-623	NM_003604	exon1	c.C129A	p.L43L	CCCAATGAGTGCG	.	111	23	115	0	.	0	0	0	0	0	4
ME2	4200	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	48434497	48434498	+	Frame_Shift_Ins	INS	-	-	AGAG	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ME2-90	NM_001168335	exon3	c.173_174insAGAG	p.I58fs	CCAAAATAGAGAC	.	118	25	96	0	.	0	0	0	0	0	3
KIF1A	547	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	241715297	241715298	+	Frame_Shift_Ins	INS	-	-	CGGAATCT	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF1A-91	NM_001244008	exon11	c.929_930insAGATTCCG	p.V310fs	GTCAACACGGAAT	.	105	8	90	0	.	0	0	0	0	0	3
MCF2L2	23101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	183035998	183035999	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MCF2L2-293	NM_015078	exon7	c.611_612insG	p.E204fs	AAGTTTTCGATGG	.	199	36	142	0	.	0	0	0	0	0	3
EDC4	23644	broad.mit.edu	37	16	67917881	67917881	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EDC4-92	NM_014329	exon29	c.C4036A	p.H1346N	GTGATGCACCTGG	.	114	8	54	2	.	213	202	10	0	1	1
OGFR	11054	hgsc.bcm.edu	37	20	61444569	61444569	+	Silent	SNP	A	A	G	rs3204348	byfrequency;by1000genomes	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OGFR-68	NM_007346	exon7	c.A1602G	p.P534P	CGAGCCAGCCGAG	.	70	13	25	0	A|0.979;G|0.021	211	168	43	0	0	1
NR5A2	2494	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	200008804	200008804	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NR5A2-227	NM_205860	exon2	c.G83C	p.C28S	CGGACCGACACGG	.	178	19	115	0	.	0	0	0	0	0	3
RHOU	58480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228879456	228879456	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RHOU-659	NM_021205	exon3	c.C746A	p.S249Y	CCAAGTCCTGGTG	.	192	81	181	0	.	46	22	24	0	0	5
SMC3	9126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	112350315	112350315	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMC3-92	NM_005445	exon16	c.T1655G	p.V552G	TGGAAGTCACTGC	.	188	80	203	0	.	9	2	7	0	0	5
MEN1	4221	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	64573212	64573216	+	Frame_Shift_Del	DEL	GATCT	GATCT	-	novel	unknown	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	GATCT	GATCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MEN1-3017	NM_130800	exon8	c.1091_1095del	p.364_365del	CTTGTAGATCTCC	.	89	61	210	0	.	0	0	0	0	0	3
SF3B2	10992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65826803	65826803	+	Silent	SNP	C	C	T	rs143148362	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SF3B2-92	NM_006842	exon11	c.C1314T	p.D438D	TGATGACGAGCAG	.	145	118	213	1	C|0.999;T|0.001	0	0	0	0	0	4
SCARB1	949	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	125279751	125279751	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCARB1-226	NM_005505	exon9	c.G1192A	p.A398T	TGCCTGCGACAGA	.	146	64	123	2	.	2	1	1	0	0	3
PUS1	80324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	132426223	132426223	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PUS1-577	NM_025215	exon5	c.G931A	p.E311K	GCCCCTGAGAGCG	.	236	109	206	0	.	28	17	11	0	0	5
POSTN	10631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	38148740	38148740	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POSTN-516	NM_006475	exon17	c.A2058C	p.E686D	ACTGCCTTCAATC	.	33	20	39	0	.	0	0	0	0	0	5
ARHGEF40	55701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21544607	21544607	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGEF40-228	NM_018071	exon6	c.C1828T	p.Q610X	TTGAGCCAACTTC	.	79	33	72	0	.	0	0	0	0	0	5
BZRAP1	9256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56399729	56399729	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BZRAP1-229	NM_004758	exon10	c.G1362A	p.E454E	TTCATGCTCCACC	.	95	21	48	0	.	4	4	0	0	0	5
STRADA	92335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61787883	61787883	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STRADA-547	NM_001003787	exon8	c.C549T	p.L183L	GTAGTCGAGGGCC	.	309	79	209	0	.	3	3	0	0	0	5
CEACAM20	125931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45028106	45028106	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CEACAM20-67	NM_001102600	exon3	c.C385T	p.Q129X	CCCGCTGGACAAT	.	466	192	386	0	.	0	0	0	0	0	5
NBAS	51594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	15607887	15607887	+	Missense_Mutation	SNP	T	T	C	rs186337430	unknown	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NBAS-94	NM_015909	exon18	c.A1919G	p.Y640C	TCTTCATAGGAGA	.	112	59	135	0	T|0.999;C|0.000	2	0	2	0	0	5
LYPD1	116372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	133425989	133425989	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LYPD1-90	NM_144586	exon2	c.G174A	p.V58V	CTCCATCACTTCT	.	97	11	114	0	.	0	0	0	0	0	4
ZEB2	9839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	145187558	145187558	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZEB2-297	NM_001171653	exon3	c.G109T	p.E37X	CTGTTTCAGAACC	.	104	13	109	0	.	1	1	0	0	0	4
PASK	23178	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	242077469	242077469	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PASK-536	NM_015148	exon6	c.C775A	p.H259N	GAAGATGAGCAAA	.	181	64	203	2	.	0	0	0	0	0	3
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	41266117	41266139	+	Frame_Shift_Del	DEL	TGCCACTACCACAGCTCCTTCTC	TGCCACTACCACAGCTCCTTCTC	-	novel	unknown	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	TGCCACTACCACAGCTCCTTCTC	TGCCACTACCACAGCTCCTTCTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTNNB1-24361	NM_001098209	exon3	c.114_136del	p.38_46del	TTCTGGTGCCACT	.	183	21	208	0	.	0	0	0	0	0	3
IP6K2	51447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48726082	48726082	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IP6K2-265	NM_016291	exon6	c.A905G	p.E302G	AGGAGTTCACGGC	.	253	40	249	0	.	48	45	3	0	0	5
ODAM	54959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71068537	71068537	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ODAM-134	NM_017855	exon9	c.G713C	p.G238A	GTGCAGGAGTTTT	.	215	85	223	0	.	0	0	0	0	0	5
HIST1H4B	8366	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	26027331	26027331	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIST1H4B-70	NM_003544	exon1	c.G150C	p.L50F	ATAAATCAAACCG	.	217	21	187	1	.	1	1	0	0	0	3
SCUBE3	222663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35207577	35207577	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCUBE3-91	NM_152753	exon8	c.G878A	p.R293H	TTTGCCGCAACAC	.	146	65	132	0	.	0	0	0	0	0	5
CYP3A7	1551	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99305480	99305480	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CYP3A7-91	NM_000765	exon12	c.C1371G	p.V457V	GACTCTGACTAGA	.	590	36	257	0	.	1	1	0	0	0	3
ESYT2	57488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	158534581	158534581	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ESYT2-92	NM_020728	exon17	c.C1882A	p.H628N	CGAGATGGAGCAC	.	57	7	106	0	.	0	0	0	0	0	4
DEC1	50514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	118162667	118162667	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DEC1-69	NM_017418	exon6	c.G43T	p.V15L	AGCATTGTGCCAG	.	107	20	106	0	.	0	0	0	0	0	4
LOC100132247	0	broad.mit.edu	37	16	22545865	22545865	+	Missense_Mutation	SNP	G	G	C	rs202011711	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001135865	exon7	c.G1561C	p.A521P	CTCACTGCCCTTC	.	64	3	55	1	G|0.984;C|0.016	1195	23	1171	1	0	1
ND2	0	bcgsc.ca	37	MT	5374	5374	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361453	exon1	c.T905C	p.I302T	CCTCAATCACACT	.	118	27	50	0	.	21384	16509	4849	11	15	1
COX1	5742	broad.mit.edu	37	MT	6070	6070	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361624	exon1	c.T167C	p.V56A	ACAACGTTATCGT	.	76	4	39	0	.	11081	10122	945	5	9	1
COX3	5742	broad.mit.edu;bcgsc.ca	37	MT	9868	9868	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000362079	exon1	c.G662A	p.R221H	TCATCCGCCAACT	.	44	11	19	0	.	90898	75040	15565	210	83	2
HHIPL2	79802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	222721210	222721210	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HHIPL2-69	NM_024746	exon1	c.G177T	p.E59D	GCAAAACTCAAGG	.	53	43	72	0	.	0	0	0	0	0	5
ATF7IP	55729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	14610191	14610191	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATF7IP-252	NM_018179	exon8	c.A2120C	p.E707A	TAAGCGAGAGTGC	.	115	62	83	0	.	1	1	0	0	0	5
SNURF	8926	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	25207273	25207273	+	Missense_Mutation	SNP	C	C	A	rs426541	byfrequency;alternate_allele	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SNURF-90	NM_005678	exon2	c.C27A	p.H9Q	CTTACACCTGAGA	.	112	17	109	0	C|0.990;T|0.010	0	0	0	0	0	3
SETD1A	9739	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	30976945	30976945	+	Silent	SNP	C	C	T	rs146323096	unknown	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SETD1A-93	NM_014712	exon8	c.C1743T	p.D581D	TGGAGACGACATG	.	75	38	71	0	C|1.000;T|0.000	0	0	0	0	0	4
BCAR1	9564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	75269596	75269596	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BCAR1-1145	NM_001170714	exon6	c.G1339C	p.D447H	CACCATCAGCCAC	.	207	96	81	0	.	11	8	3	0	0	5
MINK1	50488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4798460	4798460	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MINK1-943	NM_153827	exon25	c.G3008A	p.R1003Q	ACACCCGGGCCCA	.	98	83	121	0	.	2	0	2	0	0	5
CRHR1	1394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	43907881	43907881	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRHR1-522	NM_001145146	exon8	c.G741A	p.V247V	CATCGTGCTCACC	.	89	77	114	0	.	0	0	0	0	0	5
PGS1	9489	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76394346	76394346	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PGS1-90	NM_024419	exon4	c.A425G	p.E142G	GCCTGGAAAGTAC	.	31	25	54	0	.	0	0	0	0	0	5
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9060456	9060456	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUC16-566	NM_024690	exon3	c.C26990A	p.T8997K	GTGGATGTTGACT	.	213	80	135	1	.	0	0	0	0	0	3
ZNF233	353355	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44777858	44777858	+	Missense_Mutation	SNP	C	C	T	rs143381681	unknown	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF233-92	NM_001207005	exon5	c.C1045T	p.R349W	TATGCCCGGAGCT	.	138	71	91	1	C|1.000;T|0.000	0	0	0	0	0	3
TTC7A	57217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	47184029	47184029	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTC7A-136	NM_020458	exon3	c.G400A	p.E134K	TACGTGGAGGGCT	.	144	8	219	0	.	3	2	1	0	0	3
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79029401	79029401	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CMYA5-77	NM_153610	exon2	c.G4813C	p.D1605H	CAGGGAGACTTCC	.	135	42	51	0	.	0	0	0	0	0	5
ATP10B	23120	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	160049541	160049541	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP10B-72	NM_025153	exon14	c.G1672T	p.A558S	ACAGGGCAGCATC	.	169	54	100	1	.	0	0	0	0	0	4
DAXX	1616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33288624	33288624	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DAXX-731	NM_001141970	exon3	c.C964T	p.Q322X	TGAGCTGGAGCTG	.	78	63	121	0	.	0	0	0	0	0	5
CDK19	23097	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	110953362	110953362	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDK19-548	NM_015076	exon6	c.G517C	p.D173H	CCATGTCAGCTAA	.	14	14	28	0	.	0	0	0	0	0	4
LAMA4	3910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	112455803	112455803	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LAMA4-140	NM_001105206	exon26	c.C3423A	p.I1141I	GTAAATGATTGAG	.	26	20	27	0	.	0	0	0	0	0	5
GTF2I	2969	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	74119504	74119504	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GTF2I-90	NM_032999	exon7	c.G595C	p.V199L	GGTCGTGTGATGG	.	30	6	28	0	.	0	0	0	0	0	3
CUX1	1523	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	101821789	101821789	+	Missense_Mutation	SNP	T	T	C	rs146654997	unknown	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CUX1-160	NM_001202543	exon11	c.T902C	p.V301A	TAGAAGTTGAGTT	.	297	42	238	1	T|1.000;C|0.000	5	5	0	0	0	3
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	55540356	55540356	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RP1-102	NM_006269	exon4	c.T3914C	p.L1305P	GTTCACTTACTGA	.	116	17	118	0	.	0	0	0	0	0	4
SMARCA2	6595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	2077741	2077741	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMARCA2-653	NM_139045	exon14	c.G2149T	p.A717S	CAGTCTGCCCTCC	.	246	100	150	0	.	0	0	0	0	0	5
CDR1	1038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	139865766	139865766	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDR1-130	NM_004065	exon1	c.A766G	p.T256A	TCAGTGTCTTCCA	.	158	147	115	0	.	0	0	0	0	0	5
ND6	0	bcgsc.ca	37	MT	14673	14673	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361681	exon1	c.A1G	p.M1V	ACATCATTATTCT	.	304	51	95	0	.	3340	2904	434	1	1	1
CYTB	0	broad.mit.edu;bcgsc.ca	37	MT	14849	14849	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361789	exon1	c.T103C	p.S35P	TTCGGCTCACTCC	.	125	20	35	0	.	16286	12829	3449	2	6	2
C1QC	714	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22973845	22973845	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C1QC-90	NM_001114101	exon3	c.G307C	p.G103R	CCCATGGGCATCC	.	52	5	45	1	.	42	41	0	1	0	3
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34099087	34099087	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSMD2-103	NM_052896	exon32	c.T5015C	p.V1672A	ACCTCCACCACGT	.	180	76	153	0	.	0	0	0	0	0	5
KIF2C	11004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	45227628	45227628	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF2C-228	NM_006845	exon17	c.C1724T	p.T575I	AATATACTTTAAA	.	153	61	170	0	.	8	2	6	0	0	5
CYP4A22	284541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47611785	47611785	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CYP4A22-139	NM_001010969	exon11	c.C1324A	p.Q442K	TCTGCTCAACACA	.	286	36	270	0	.	0	0	0	0	0	5
HMGCS2	3158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	120295286	120295286	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HMGCS2-92	NM_005518	exon8	c.G1306C	p.D436H	ACTTGTCCAGGGG	.	178	24	198	0	.	0	0	0	0	0	4
CCT3	7203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156303393	156303393	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCT3-92	NM_005998	exon5	c.T249A	p.I83I	CCGGCTAATTTCG	.	85	26	50	0	.	433	338	94	0	1	5
OLFML2B	25903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161954657	161954657	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OLFML2B-69	NM_015441	exon7	c.G1588A	p.V530I	TGGTTACGTAAAT	.	394	88	298	0	.	3	3	0	0	0	5
SELL	6402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	169672445	169672445	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SELL-90	NM_000655	exon6	c.C942G	p.T314T	ACAAATGGTTTTC	.	269	61	144	0	.	0	0	0	0	0	5
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179983496	179983496	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CEP350-26	NM_014810	exon10	c.G1908C	p.Q636H	GAAGCAGAAGGAA	.	228	49	139	0	.	4	3	1	0	0	5
PTGS2	5743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186646810	186646810	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTGS2-227	NM_000963	exon5	c.C610T	p.P204S	AAGCTGGCCCTCG	.	189	59	82	0	.	0	0	0	0	0	5
PTPRC	5788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	198711467	198711467	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPRC-295	NM_002838	exon25	c.C2668A	p.R890R	CTAAGGCGACAGA	.	351	76	232	0	.	0	0	0	0	0	5
TRAF3IP3	80342	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	209948701	209948701	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRAF3IP3-291	NM_025228	exon10	c.C782A	p.S261Y	AATACTCCCCTTG	.	334	88	210	2	.	0	0	0	0	0	3
DTL	51514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	212245552	212245552	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DTL-22	NM_016448	exon11	c.G1032A	p.W344X	CATATGGAAGGTA	.	173	46	122	0	.	0	0	0	0	0	5
OR2T33	391195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248437020	248437020	+	Missense_Mutation	SNP	C	C	T	rs138653777	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2T33-114	NM_001004695	exon1	c.G97A	p.V33I	TCAAAACGATACT	.	1014	374	633	2	C|1.000;T|0.000	0	0	0	0	0	4
PRKCQ	5588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	6533734	6533734	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRKCQ-1380	NM_006257	exon8	c.T701A	p.F234Y	ACTTTAAATCTGT	.	164	32	110	0	.	0	0	0	0	0	5
ECHDC3	79746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	11805518	11805518	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ECHDC3-90	NM_024693	exon5	c.C887G	p.P296R	GAAAACCTGTCTG	.	16	8	10	0	.	0	0	0	0	0	3
ERCC6	2074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50714007	50714007	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ERCC6-1153	NM_000124	exon6	c.G1449T	p.M483I	ATCGTCCTCCAGC	.	41	13	48	0	.	0	0	0	0	0	5
NDUFB8	4714	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	102289594	102289594	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NDUFB8-90	NM_005004	exon1	c.G15T	p.R5S	CCCGGCCCTGGCC	.	188	118	90	0	.	271	109	161	1	0	4
C10orf90	118611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	128193343	128193343	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C10orf90-92	NM_001004298	exon3	c.C426T	p.I142I	GGCCGTGATGGTG	.	15	5	14	0	.	0	0	0	0	0	3
MRGPRE	116534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	3250000	3250000	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MRGPRE-136	NM_001039165	exon2	c.C30T	p.H10H	CCCCACGTGCTGT	.	60	55	41	0	.	0	0	0	0	0	5
OR51A4	401666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4967624	4967624	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR51A4-71	NM_001005329	exon1	c.T707G	p.L236R	GCCTTAAGCTGCT	.	718	333	872	0	.	0	0	0	0	0	5
MICALCL	84953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	12315183	12315183	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MICALCL-91	NM_032867	exon3	c.G205C	p.A69P	AGGCGAGCCGTAG	.	109	55	119	0	.	0	0	0	0	0	5
NCAM1	4684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	113103921	113103921	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NCAM1-23	NM_001242607	exon15	c.C1653G	p.A551A	CACAGCCCAGGTG	.	285	123	222	0	.	27	9	18	0	0	5
FKBP4	2288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2910398	2910398	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FKBP4-226	NM_002014	exon9	c.A1148G	p.Y383C	AGCTCTACCCCAA	.	147	89	133	0	.	298	116	182	0	0	5
CSAD	51380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53555170	53555170	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSAD-91	NM_015989	exon11	c.G787A	p.A263T	GCACAGCACCCTG	.	356	99	213	0	.	0	0	0	0	0	5
NFE2	4778	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54686192	54686192	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NFE2-226	NM_001261461	exon4	c.T1088C	p.V363A	CGGGGCACAAGGA	.	259	84	177	1	.	0	0	0	0	0	4
ESYT1	23344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56522161	56522161	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ESYT1-95	NM_015292	exon1	c.C58G	p.P20A	TCTGCTCCCTCCG	.	76	17	13	0	.	51	43	8	0	0	5
BAZ2A	11176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57005765	57005765	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BAZ2A-22	NM_013449	exon6	c.C1407T	p.V469V	TGGAGAGACCACT	.	359	44	108	0	.	114	49	65	0	0	5
ATP8A2	51761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	26138139	26138139	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP8A2-138	NM_016529	exon16	c.C1443A	p.P481P	TGACCCCAGGCTG	.	92	36	78	0	.	0	0	0	0	0	5
DCLK1	9201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36410236	36410236	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DCLK1-826	NM_004734	exon8	c.A1163G	p.E388G	TATCGTTCTGTTA	.	128	47	158	0	.	0	0	0	0	0	5
EXD2	55218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	69704629	69704629	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001193361	exon8	c.G1630C	p.A544P	CAAGAGGCTGCCA	.	255	68	182	0	.	6	2	4	0	0	5
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	101348688	101348688	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RTL1-46	NM_001134888	exon1	c.T2438A	p.I813N	AATTCGATGAAGT	.	138	34	116	0	.	0	0	0	0	0	5
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	101349080	101349080	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RTL1-46	NM_001134888	exon1	c.C2046T	p.T682T	ATCTTCGGTGCGG	.	233	70	153	0	.	0	0	0	0	0	5
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	34064256	34064256	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RYR3-520	NM_001243996	exon63	c.A8952T	p.K2984N	GATTAAAGGCGTT	.	74	68	169	1	.	0	0	0	0	0	4
FANCI	55215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	89790933	89790933	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FANCI-92	NM_001113378	exon2	c.G55A	p.E19K	CTGCAAGAATTTC	.	65	25	88	0	.	1	0	1	0	0	5
KIF7	374654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	90176983	90176983	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF7-523	NM_198525	exon12	c.T2526C	p.L842L	CTCGCGAAGCCGC	.	85	36	29	0	.	3	2	1	0	0	5
MGRN1	23295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4731691	4731691	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MGRN1-92	NM_015246	exon13	c.C1272T	p.S424S	CCTGTCCCAGGCC	.	121	73	58	0	.	45	17	28	0	0	5
PRKCB	5579	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	23847557	23847557	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRKCB-1530	NM_212535	exon1	c.G61T	p.A21S	CGCTTCGCCCGCA	.	345	134	73	0	.	0	0	0	0	0	4
CACNG3	10368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24268165	24268165	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNG3-90	NM_006539	exon1	c.G90A	p.T30T	GGGCACGGACTAC	.	244	62	200	0	.	0	0	0	0	0	5
ITGAM	3684	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	31288327	31288327	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITGAM-226	NM_000632	exon11	c.C1170T	p.I390I	CTTCATCAACATG	.	161	14	127	0	.	0	0	0	0	0	3
ABCC11	85320	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	48201459	48201459	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCC11-95	NM_033151	exon28	c.G4004C	p.R1335P	GTGACACGGTGGG	.	446	127	272	1	.	0	0	0	0	0	4
CNTNAP4	85445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	76555137	76555137	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTNAP4-70	NM_138994	exon15	c.G2247C	p.K749N	TTTTAAGACAACA	.	35	7	32	0	.	0	0	0	0	0	4
CNTD1	124817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40957779	40957779	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTD1-90	NM_173478	exon4	c.C457G	p.L153V	CAGGCTCTAGGCT	.	60	37	87	0	.	0	0	0	0	0	5
PTGES3L-AARSD1	100885850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	41105767	41105767	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001136042	exon15	c.A1504C	p.I502L	CAATGATATTCAT	.	151	16	126	0	.	20	18	2	0	0	4
EPN3	55040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48614027	48614027	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPN3-91	NM_017957	exon2	c.G110T	p.S37I	CCCCTAGTTCGCT	.	130	109	129	1	.	0	0	0	0	0	4
COLEC12	81035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	346782	346782	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COLEC12-92	NM_130386	exon5	c.C840T	p.N280N	GGTGTCGTTGTTG	.	65	20	67	0	.	0	0	0	0	0	5
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	1046951	1046951	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCA7-98	NM_019112	exon14	c.C1773T	p.L591L	GGTGCTCTGGCTA	.	634	89	11	0	.	6	3	3	0	0	4
RFX2	5990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6047473	6047473	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RFX2-156	NM_134433	exon2	c.C35T	p.A12V	ACGGACGCTGGCG	.	217	65	18	0	.	1	1	0	0	0	5
RPS28	6234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8386554	8386554	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RPS28-46	NM_001031	exon2	c.G54C	p.L18L	GGTCCTGGGCAGG	.	80	33	59	0	.	2034	1388	645	1	0	5
ZNF846	162993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9869036	9869036	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF846-23	NM_001077624	exon6	c.A717G	p.S239S	AAGGTGTGAGGAA	.	90	28	72	0	.	0	0	0	0	0	5
ZNF653	115950	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	11594864	11594864	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF653-90	NM_138783	exon8	c.C1663T	p.P555S	GCAGGGGGGTCTC	.	269	115	45	0	.	0	0	0	0	0	4
AKAP8L	26993	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	15508345	15508345	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AKAP8L-1	NM_014371	exon11	c.A1391C	p.Q464P	AGATCCTGGTCTC	.	580	45	133	0	.	4	3	1	0	0	3
OR10H5	284433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15905273	15905273	+	Missense_Mutation	SNP	C	C	T	rs145808850	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR10H5-69	NM_001004466	exon1	c.C415T	p.R139W	AGCCTGCGGGGCT	.	1865	215	342	0	A|0.001;C|0.999;T|0.000	0	0	0	0	0	4
UPF1	5976	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	18943028	18943028	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UPF1-91	NM_002911	exon1	c.G10C	p.E4Q	AGCGTGGAGGCGT	.	181	113	69	0	.	3	1	2	0	0	4
ZNF607	84775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38189550	38189550	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF607-90	NM_032689	exon5	c.A1482G	p.I494M	GCGATGTATAGTG	.	133	35	95	0	.	0	0	0	0	0	5
SAE1	10055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47673134	47673134	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SAE1-227	NM_001145714	exon6	c.A687G	p.A229A	GAAAGCAAAGGCT	.	164	37	106	0	.	153	107	46	0	0	5
LRRC4B	94030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51022585	51022585	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC4B-205	NM_001080457	exon3	c.G385A	p.A129T	TGAAGGCGCCCAC	.	224	58	84	0	.	0	0	0	0	0	5
TMEM86B	255043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55739581	55739581	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM86B-90	NM_173804	exon2	c.C276G	p.I92M	CGGCCAGATGAGG	.	196	49	101	0	.	16	13	3	0	0	5
ZFP28	140612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57065768	57065768	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFP28-91	NM_020828	exon8	c.T1614C	p.C538C	TGTATGTCACAAA	.	56	8	61	0	.	8	8	0	0	0	4
MYT1L	23040	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	1946895	1946895	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYT1L-95	NM_015025	exon9	c.G364A	p.E122K	CCTCCTCGTCCTC	.	270	168	135	2	.	0	0	0	0	0	3
RRM2	6241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	10263878	10263878	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RRM2-227	NM_001165931	exon4	c.G514A	p.D172N	TCCAAGGACATTC	.	77	28	77	0	.	101	67	34	0	0	5
USP39	10713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	85872161	85872161	+	Silent	SNP	C	C	T	rs145807458	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP39-658	NM_001256725	exon11	c.C1518T	p.D506D	GCATGACGGCAAG	.	318	88	198	0	C|1.000;T|0.000	75	54	21	0	0	5
RANBP2	5903	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	109380404	109380404	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RANBP2-675	NM_006267	exon20	c.C3409T	p.P1137S	CATGGTCCAGGGA	.	219	64	195	1	.	5	3	2	0	0	4
SMPD4	55627	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	130911319	130911319	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMPD4-90	NM_017951	exon17	c.G1966A	p.E656K	GGTATTCATCTGT	.	478	104	424	1	.	57	42	15	0	0	3
MZT2A	653784	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	132241688	132241688	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MZT2A-68	NM_001085365	exon3	c.C423T	p.T141T	CAGCCTGGTAGCG	.	333	25	161	0	.	668	653	14	0	1	3
SPC25	57405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169745769	169745769	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPC25-226	NM_020675	exon3	c.C166A	p.R56R	CCATTCGTTCTTC	.	44	14	49	0	.	18	13	5	0	0	5
DHRS9	10170	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169939955	169939955	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DHRS9-90	NM_005771	exon6	c.G430A	p.V144M	ATCAGTGTGACAC	.	261	89	185	1	.	0	0	0	0	0	4
DNAH7	56171	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	196740469	196740469	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH7-102	NM_018897	exon38	c.G6216C	p.W2072C	ATCATACCAGTTC	.	241	82	196	1	.	0	0	0	0	0	3
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	212589871	212589871	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ERBB4-1461	NM_001042599	exon6	c.C671T	p.P224L	ACGTAAGGTCCGT	.	490	122	346	0	.	0	0	0	0	0	5
ITCH	83737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33080396	33080396	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITCH-659	NM_001257137	exon24	c.C2533G	p.L845V	GCTGATCTCATGG	.	100	34	82	0	.	0	0	0	0	0	5
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	40713387	40713387	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPRT-664	NM_133170	exon30	c.C4128T	p.V1376V	TCGTCGGACCACT	.	348	95	219	0	.	0	0	0	0	0	5
KRTAP11-1	337880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	32253737	32253737	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRTAP11-1-91	NM_175858	exon1	c.G107T	p.C36F	CCCAGGCAGTCAG	.	353	82	185	0	.	0	0	0	0	0	5
HUNK	30811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33371313	33371313	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HUNK-334	NM_014586	exon11	c.C1961G	p.P654R	GGAGCCCCAATTG	.	39	11	43	0	.	0	0	0	0	0	5
KCNJ6	3763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	38997475	38997475	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNJ6-91	NM_002240	exon4	c.G1258T	p.E420X	TGGATTCATTCTC	.	70	5	58	0	.	0	0	0	0	0	3
KRTAP10-9	386676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46047395	46047395	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_198690	exon1	c.G307A	p.V103I	GTGCCCGTCTGCT	.	509	133	113	0	.	0	0	0	0	0	5
MN1	4330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	28192787	28192787	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MN1-993	NM_002430	exon1	c.G3745A	p.E1249K	CCTTCTCCCAGGG	.	176	71	85	0	.	2	2	0	0	0	5
OSBP2	23762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31137254	31137254	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OSBP2-114	NM_030758	exon2	c.A751T	p.S251C	GCCAGGAGCTACC	.	116	53	89	0	.	6	5	1	0	0	5
UPK3A	7380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45681905	45681905	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UPK3A-90	NM_006953	exon2	c.C136A	p.L46I	AAGCCTCTCTGCA	.	208	103	188	0	.	0	0	0	0	0	5
VILL	50853	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38043315	38043315	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VILL-90	NM_015873	exon12	c.C1443A	p.F481L	CCACTTCCTCGCC	.	286	112	232	1	.	0	0	0	0	0	4
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	41266132	41266155	+	In_Frame_Del	DEL	TCCTTCTCTGAGTGGTAAAGGCAA	TCCTTCTCTGAGTGGTAAAGGCAA	-	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	TCCTTCTCTGAGTGGTAAAGGCAA	TCCTTCTCTGAGTGGTAAAGGCAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTNNB1-24361	NM_001098209	exon3	c.129_152del	p.43_51del	CACAGCTCCTTCT	.	113	15	173	0	.	0	0	0	0	0	3
SETD2	29072	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	47139519	47139519	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SETD2-1273	NM_014159	exon9	c.G5068C	p.G1690R	CTCCTCCCAGGTA	.	36	4	54	0	.	11	10	1	0	0	3
PDZRN3	23024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	73437153	73437153	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDZRN3-232	NM_015009	exon8	c.A1484G	p.N495S	GAAAAGTTTTTAT	.	14	6	23	0	.	8	5	3	0	0	4
ZPLD1	131368	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	102171934	102171934	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZPLD1-72	NM_175056	exon3	c.T326C	p.I109T	TGGTCATTTTTAT	.	109	54	110	0	.	0	0	0	0	0	4
BCHE	590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	165548281	165548281	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BCHE-94	NM_000055	exon2	c.T541C	p.F181L	CTAAGAATCCTAG	.	65	36	84	0	.	16	16	0	0	0	5
ZNF639	51193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	179051848	179051848	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF639-90	NM_016331	exon7	c.A1096G	p.T366A	AAAATTACCTTTG	.	139	62	231	0	.	15	13	2	0	0	5
ATP13A4	84239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193174877	193174877	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP13A4-92	NM_032279	exon16	c.A1827G	p.T609T	AATGACTGTCATT	.	161	76	161	0	.	0	0	0	0	0	5
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89986640	89986640	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR98-103	NM_032119	exon31	c.G6733T	p.E2245X	ATTGTAGAGGAAC	.	126	41	98	0	.	0	0	0	0	0	5
SLC23A1	9963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	138714364	138714364	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC23A1-90	NM_152685	exon10	c.C1095T	p.F365F	TTCGGTGAAGATG	.	239	24	157	0	.	0	0	0	0	0	4
PCDHGA4	56111	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	140737208	140737208	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_032053	exon1	c.G2441A	p.R814K	ATAATAGATCATA	.	103	17	125	0	.	0	0	0	0	0	3
SLC26A2	1836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149360104	149360104	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC26A2-90	NM_000112	exon3	c.G948C	p.L316F	TCTTTTGCCAACC	.	108	48	83	0	.	15	8	7	0	0	5
HIST1H3H	8357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27777856	27777856	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIST1H3H-45	NM_003536	exon1	c.C5G	p.A2G	GCATGGCGCGTAC	.	240	52	80	0	.	3	3	0	0	0	5
ABCF1	23	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30557635	30557635	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCF1-92	NM_001025091	exon22	c.C2117T	p.T706M	AGGAGACGCCCAC	.	154	47	118	1	.	61	30	31	0	0	3
PPP1R18	170954	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	30652252	30652252	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001134870	exon2	c.T1544C	p.L515P	CCCCCCAGAACCA	.	135	9	91	0	.	42	39	2	1	0	3
TNXB	7148	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32023746	32023746	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNXB-90	NM_019105	exon24	c.G8349T	p.R2783S	CTCGCCCCTGACA	.	384	116	104	2	.	0	0	0	0	0	4
NOTCH4	4855	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32166298	32166298	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOTCH4-1321	NM_004557	exon26	c.G4656T	p.W1552C	CAGAGACCAGAGC	.	132	31	93	2	.	5	5	0	0	0	3
CUTA	51596	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	33385931	33385931	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CUTA-90	NM_001014433	exon1	c.G32C	p.G11A	CCTGCGCCTCCAG	.	225	18	138	0	.	7	7	0	0	0	3
PPARD	5467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35388052	35388052	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPARD-187	NM_001171818	exon5	c.G279T	p.G93G	TGAGGGGTGCAAG	.	91	42	54	0	.	0	0	0	0	0	5
UNC5CL	222643	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41002645	41002645	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UNC5CL-92	NM_173561	exon2	c.A169C	p.T57P	GGGGGGTAGGCTG	.	121	30	83	2	.	1	1	0	0	0	4
RCAN2	10231	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	46214635	46214635	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RCAN2-90	NM_001251973	exon4	c.G421T	p.G141X	TGTCTCCATCTGT	.	98	5	97	0	.	2	2	0	0	0	3
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51524734	51524734	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKHD1-603	NM_138694	exon61	c.A10190T	p.Q3397L	AGAAATTGGTATG	.	79	30	93	0	.	0	0	0	0	0	5
KHDC1L	100129128	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	73935131	73935131	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KHDC1L-1	NM_001126063	exon1	c.A1G	p.M1V	CGGCCATGCTGTG	.	103	27	89	1	.	0	0	0	0	0	3
MCM9	254394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	119252669	119252669	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MCM9-515	NM_017696	exon1	c.C220G	p.R74G	ACCTTCGCAGTGC	.	181	115	189	0	.	1	1	0	0	0	5
KIAA1244	57221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	138531144	138531144	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1244-228	NM_020340	exon4	c.C317T	p.S106L	CGCCTTCGCTCAA	.	681	223	362	0	.	0	0	0	0	0	5
KIF25	3834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	168442715	168442715	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF25-92	NM_030615	exon7	c.G713A	p.R238H	GGAGCCGCAGAGC	.	399	128	215	0	.	0	0	0	0	0	5
ABCB5	340273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20782576	20782576	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCB5-158	NM_001163941	exon25	c.G3101A	p.R1034H	TCCTCCGTGGCTT	.	252	98	172	0	.	0	0	0	0	0	5
NPSR1	387129	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	34698162	34698162	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NPSR1-94	NM_207172	exon1	c.C138G	p.Y46X	CTACTACTCCTTT	.	209	56	134	1	.	0	0	0	0	0	4
ATP5J2-PTCD1	100526740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99032679	99032679	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001198879	exon3	c.A334T	p.T112S	TGCCCGTGTTTTC	.	66	18	56	0	.	2	1	1	0	0	5
RELN	5649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	103243773	103243773	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RELN-574	NM_173054	exon24	c.G3311C	p.G1104A	GATGATCCAGAAG	.	164	44	156	0	.	5	4	1	0	0	5
KIAA1549	57670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	138601908	138601908	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1549-369	NM_020910	exon2	c.2464delG	p.V822fs	CAGACACGTGACC	.	142	29	96	0	.	0	0	0	0	0	3
NOS3	4846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150698991	150698991	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOS3-1011	NM_001160111	exon12	c.G1585T	p.G529C	GAGACCGGCCGGG	.	263	52	191	0	.	1	1	0	0	0	5
SLC4A2	6522	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150771214	150771214	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC4A2-90	NM_003040	exon17	c.G2624C	p.R875T	GGGCAAGACCCAC	.	183	52	78	1	.	56	36	20	0	0	4
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	10465856	10465856	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RP1L1-139	NM_178857	exon4	c.G5752A	p.E1918K	CTGTCTCTGGCTG	.	45	8	30	0	.	0	0	0	0	0	4
XPO7	23039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	21845361	21845361	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	XPO7-273	NM_015024	exon15	c.G1780A	p.G594R	TTCATAGGAAAAA	.	257	54	173	0	.	0	0	0	0	0	5
ENTPD4	9583	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	23305367	23305367	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ENTPD4-92	NM_004901	exon4	c.A238G	p.T80A	TGTCTGTAGCTTC	.	503	106	227	1	.	8	5	3	0	0	4
KIF13B	23303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	29035052	29035052	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF13B-22	NM_015254	exon9	c.C764T	p.A255V	CTGCCAGCTAAAT	.	124	26	93	0	.	11	7	4	0	0	5
RB1CC1	9821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	53569634	53569634	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RB1CC1-170	NM_001083617	exon15	c.G2755T	p.E919X	CTTTTTCATGTTT	.	37	6	33	0	.	20	20	0	0	0	4
C8orf46	254778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	67428183	67428183	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C8orf46-92	NM_152765	exon6	c.G496A	p.E166K	GGAGCAGAAGCCT	.	47	7	45	0	.	0	0	0	0	0	4
RSPO2	340419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	108970363	108970363	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RSPO2-231	NM_178565	exon5	c.T561C	p.C187C	GGTTGGACACAGT	.	298	61	146	0	.	0	0	0	0	0	5
C9orf170	401535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	89771511	89771511	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C9orf170-90	NM_001001709	exon2	c.G192T	p.L64L	AACCCTGACTAAT	.	78	15	85	0	.	0	0	0	0	0	4
GALNT12	79695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	101589096	101589096	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GALNT12-92	NM_024642	exon3	c.G604A	p.A202T	ATCCGCGCCAACA	.	119	34	39	0	.	3	2	1	0	0	5
GRIN3A	116443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	104449164	104449164	+	Missense_Mutation	SNP	C	C	T	rs145326290	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRIN3A-96	NM_133445	exon2	c.G1018A	p.E340K	TAATTTCGAAAAT	.	67	16	82	0	C|0.999;T|0.000	0	0	0	0	0	4
TMEM8C	389827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136379902	136379902	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM8C-68	NM_001080483	exon5	c.G522A	p.W174X	GTAGTCCCAGTCC	.	103	32	68	0	.	0	0	0	0	0	5
NLGN4X	57502	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	5821337	5821337	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLGN4X-195	NM_181332	exon5	c.C1382T	p.A461V	TACTGCGCGTGCA	.	197	99	170	0	.	0	0	0	0	0	4
HDHD1	8226	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	7023778	7023778	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HDHD1-130	NM_001135565	exon3	c.T232G	p.L78V	CCTCTAATGCCTT	.	173	24	253	1	.	5	2	3	0	0	4
FAM9A	171482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	8763192	8763192	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM9A-130	NM_174951	exon7	c.G758T	p.G253V	CCTCCTCCTCCTT	.	58	35	57	0	.	0	0	0	0	0	5
FRMPD4	9758	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12734821	12734821	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FRMPD4-263	NM_014728	exon15	c.C2243T	p.A748V	ATGACGCGGAGGA	.	178	92	108	1	.	0	0	0	0	0	4
DMD	1756	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	31196848	31196848	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DMD-265	NM_004006	exon70	c.G10161A	p.A3387A	ATGCTTCGCAAAA	.	139	62	260	2	.	10	0	10	0	0	3
WDR45	11152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48935337	48935337	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDR45-131	NM_007075	exon5	c.G200A	p.G67D	CCACCGCCCACCA	.	111	59	129	0	.	30	0	30	0	0	5
MAGIX	79917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49021301	49021301	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAGIX-108	NM_024859	exon4	c.A380T	p.E127V	CTGTGGAGCTGGT	.	95	39	101	0	.	0	0	0	0	0	5
ARL13A	392509	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	100229150	100229150	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARL13A-131	NM_001162490	exon3	c.T94C	p.S32P	AACAACTCTGGCA	.	83	7	112	0	.	0	0	0	0	0	3
ZMAT1	84460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	101139313	101139313	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZMAT1-131	NM_001011657	exon7	c.G1086A	p.Q362Q	GTAGGTCTGGGAA	.	133	19	149	0	.	1	1	0	0	0	4
PAK3	5063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	110439738	110439738	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAK3-1043	NM_001128168	exon14	c.C1385T	p.P462L	GAACCCCATATTG	.	152	60	137	0	.	0	0	0	0	0	5
WDR44	54521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	117532433	117532433	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDR44-133	NM_001184965	exon8	c.C1274A	p.T425K	AGAAAACGTGAGT	.	383	147	540	0	.	0	0	0	0	0	5
TAZ	6901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153647890	153647890	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAZ-130	NM_181312	exon6	c.G469A	p.V157I	GATGGCGTCTACC	.	267	109	253	0	.	2	2	0	0	0	5
YJEFN3	374887	broad.mit.edu	37	19	19648155	19648155	+	Missense_Mutation	SNP	C	C	T	rs200289592	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	YJEFN3-90	NM_198537	exon7	c.C722T	p.S241L	GCGATTCGGAGGA	.	84	46	17	1	.	4	2	2	0	0	1
CRIPAK	285464	hgsc.bcm.edu	37	4	1388867	1388867	+	Missense_Mutation	SNP	A	A	C	rs76058011	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRIPAK-90	NM_175918	exon1	c.A568C	p.I190L	CGCCTGATCACAC	.	383	28	44	0	A|0.994;C|0.006	76	6	70	0	0	1
C7	730	broad.mit.edu;ucsc.edu	37	5	40959605	40959605	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C7-22	NM_000587	exon12	c.G1544A	p.G515E	TCCAAGGGAAGAA	.	190	32	111	2	.	238	160	78	0	0	2
MFSD3	113655	broad.mit.edu;bcgsc.ca	37	8	145736053	145736053	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MFSD3-69	NM_138431	exon3	c.C903A	p.V301V	CTTGGTCTTCCAC	.	74	5	44	0	.	33	30	3	0	0	2
COX1	5742	broad.mit.edu	37	MT	6460	6460	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361624	exon1	c.G557A	p.X186X	TCGTCTGATCCGT	.	14	3	39	0	.	30451	23883	6542	8	18	1
TTLL10	254173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1117120	1117120	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTLL10-153	NM_001130045	exon9	c.756-1G>A	.	GCTGCAGGCTGGA	.	392	94	298	0	.	0	0	0	0	0	4
CCNL2	81669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1334033	1334033	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCNL2-70	NM_030937	exon2	c.C307T	p.Q103X	ACACCTGCCCGGT	.	245	124	215	0	.	0	0	0	0	0	5
GNB1	2782	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1747196	1747196	+	Silent	SNP	T	T	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GNB1-227	NM_002074	exon5	c.A202C	p.R68R	CCTACCTGGAGTC	.	176	88	115	1	.	0	0	0	0	0	4
PANK4	55229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	2440355	2440355	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PANK4-158	NM_018216	exon19	c.G2253T	p.A751A	CAGCCACGCGTTC	.	220	104	77	0	.	0	0	0	0	0	5
PRDM16	63976	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3328612	3328612	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRDM16-660	NM_022114	exon9	c.G1851C	p.T617T	GGACACGACCACG	.	298	62	174	1	.	0	0	0	0	0	4
TP73	7161	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	3639930	3639930	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TP73-415	NM_005427	exon6	c.C629T	p.P210L	CTGCTCCAGCCAG	.	731	161	597	2	.	0	0	0	0	0	3
CCDC27	148870	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	3669101	3669101	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC27-91	NM_152492	exon1	c.56delG	p.R19fs	ATCCACGGGAAAA	.	176	88	101	0	.	0	0	0	0	0	3
CHD5	26038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6196856	6196856	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHD5-719	NM_015557	exon16	c.C2506T	p.L836L	AGCCCAGGATGGC	.	158	37	104	0	.	0	0	0	0	0	5
CAMTA1	23261	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	7723792	7723792	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CAMTA1-520	NM_015215	exon9	c.G1185T	p.Q395H	GTCCCAGAGCGCC	.	227	118	170	1	.	0	0	0	0	0	4
PER3	8863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	7869982	7869982	+	Nonsense_Mutation	SNP	C	C	A	rs140055805	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PER3-93	NM_016831	exon11	c.C1269A	p.Y423X	CGGCTACGGGAGC	.	297	143	215	1	C|1.000;T|0.000	0	0	0	0	0	4
VPS13D	55187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12339596	12339596	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VPS13D-95	NM_015378	exon20	c.G4491A	p.L1497L	TAAACTGGAGAAG	.	169	49	156	0	.	0	0	0	0	0	5
PRAMEF1	65121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12854331	12854331	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRAMEF1-22	NM_023013	exon3	c.G555C	p.L185L	TAAGCTGGTCAAT	.	289	134	261	0	.	0	0	0	0	0	5
PRAMEF11	440560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12887562	12887562	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001146344	exon3	c.C295A	p.P99T	TCCTTGGACAGTC	.	72	21	43	0	.	0	0	0	0	0	5
PRAMEF2	65122	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12918933	12918933	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRAMEF2-68	NM_023014	exon2	c.G69C	p.L23F	GGCCTTGTCCATC	.	152	90	165	1	.	0	0	0	0	0	4
PRAMEF10	343071	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	12954838	12954838	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRAMEF10-90	NM_001039361	exon3	c.G445T	p.V149L	TGAACACCTTCAA	.	143	69	146	1	.	0	0	0	0	0	3
ATP13A2	23400	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	17313430	17313430	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP13A2-93	NM_022089	exon27	c.A3105G	p.T1035T	GGCCACTGTCCTG	.	159	75	72	1	.	0	0	0	0	0	3
PAX7	5081	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	19018406	19018406	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAX7-1630	NM_002584	exon5	c.G745T	p.E249X	CGCGAGGAGCTGG	.	203	46	169	1	.	0	0	0	0	0	3
PLA2G5	5322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	20416346	20416346	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLA2G5-515	NM_000929	exon4	c.C250T	p.Q84X	CGCACACAGTCCT	.	181	48	148	0	.	0	0	0	0	0	5
VWA5B1	127731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	20669628	20669628	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001039500	exon16	c.C2368A	p.P790T	GACCCCCCAGCCG	.	221	57	70	0	.	0	0	0	0	0	4
VWA5B1	127731	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	20680294	20680294	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001039500	exon22	c.C3186A	p.A1062A	CGAAGCCTTCTGT	.	139	62	112	2	.	0	0	0	0	0	3
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22179236	22179236	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HSPG2-141	NM_005529	exon52	c.A6681T	p.L2227L	GGCCTCTAGGGGG	.	171	43	110	0	.	0	0	0	0	0	5
CNKSR1	10256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	26509747	26509747	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNKSR1-846	NM_006314	exon7	c.G684T	p.Q228H	CACCCAGGTGAGA	.	317	80	277	0	.	0	0	0	0	0	5
WDTC1	23038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27627876	27627876	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDTC1-91	NM_001276252	exon13	c.G1392A	p.P464P	ATTTCCGGAGCAG	.	119	24	119	0	.	0	0	0	0	0	5
MECR	51102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	29520573	29520573	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MECR-91	NM_016011	exon10	c.G1083T	p.M361I	GGGCTTCATGGAG	.	102	29	76	0	.	0	0	0	0	0	5
PTPRU	10076	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	29644272	29644272	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPRU-291	NM_005704	exon26	c.G3556T	p.V1186F	AACTCGGTCACCC	.	108	32	35	1	.	0	0	0	0	0	4
PUM1	9698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	31447604	31447604	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PUM1-92	NM_014676	exon10	c.G1400T	p.G467V	TAGACTCCCCAGG	.	116	46	85	0	.	0	0	0	0	0	5
PTP4A2	8073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32374453	32374453	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTP4A2-650	NM_080391	exon6	c.G504A	p.X168X	TTCCTTCTACTGA	.	92	41	91	0	.	0	0	0	0	0	5
LCK	3932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32741016	32741016	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LCK-1378	NM_005356	exon5	c.G373T	p.E125X	GAGCCCGAACCGT	.	398	198	292	0	.	0	0	0	0	0	5
HMGB4	127540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34329806	34329806	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HMGB4-90	NM_145205	exon2	c.T14A	p.I5N	AAGAAATCCAGCT	.	163	37	145	0	.	0	0	0	0	0	5
C1orf94	84970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34662954	34662954	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C1orf94-90	NM_001134734	exon2	c.C449A	p.S150Y	GCAGCTCTCCCGA	.	100	20	81	0	.	0	0	0	0	0	5
C1orf94	84970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34663403	34663403	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C1orf94-90	NM_001134734	exon2	c.C898A	p.R300S	CCTGCACGTCCTG	.	107	53	101	0	.	0	0	0	0	0	5
RSPO1	284654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	38078537	38078537	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RSPO1-22	NM_001242908	exon7	c.G682A	p.A228T	TCCTGGCCAGGTT	.	95	27	94	0	.	0	0	0	0	0	5
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39549943	39549943	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MACF1-165	NM_012090	exon3	c.G53T	p.R18L	GTGAGCGGTCTTG	.	138	33	101	0	.	0	0	0	0	0	5
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39818684	39818684	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MACF1-165	NM_012090	exon40	c.A5019T	p.K1673N	GAGTAAAGCAGCA	.	64	29	66	0	.	0	0	0	0	0	5
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	42045967	42045967	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIVEP3-157	NM_024503	exon4	c.G4502T	p.S1501I	GACAGGCTGGACA	.	133	35	103	0	.	0	0	0	0	0	5
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	42047294	42047294	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIVEP3-157	NM_024503	exon4	c.T3175C	p.L1059L	CCTCCAACTCAGA	.	114	21	94	0	.	0	0	0	0	0	5
ELAVL4	1996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	50610817	50610817	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ELAVL4-516	NM_001144775	exon2	c.C249T	p.F83F	TCTCTTCGGGAGC	.	187	73	181	0	.	0	0	0	0	0	4
ELAVL4	1996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	50659488	50659488	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ELAVL4-516	NM_001144775	exon4	c.G457T	p.V153F	CTCTATGTTAGCG	.	259	62	219	0	.	0	0	0	0	0	5
ZFYVE9	9372	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	52740214	52740214	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFYVE9-230	NM_004799	exon8	c.G2704C	p.D902H	CCTGAAGATGGCC	.	125	8	119	0	.	0	0	0	0	0	3
WDR78	79819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67306280	67306280	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDR78-92	NM_207014	exon9	c.G1366A	p.E456K	CCTCCTCCTTCTT	.	143	38	98	0	.	0	0	0	0	0	5
LRRC7	57554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	70446116	70446116	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC7-163	NM_020794	exon7	c.G652T	p.A218S	AATAATGCATTAC	.	72	25	74	0	.	0	0	0	0	0	5
LRRC7	57554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	70504166	70504166	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC7-163	NM_020794	exon19	c.C2545A	p.P849T	AGAACCCCTAGTC	.	269	59	228	0	.	0	0	0	0	0	5
LRRC7	57554	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	70505345	70505345	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC7-163	NM_020794	exon19	c.G3724A	p.D1242N	TATGGTGACAAGC	.	139	31	126	1	.	0	0	0	0	0	4
SRSF11	9295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	70701183	70701183	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SRSF11-227	NM_001190987	exon6	c.541-1G>A	.	TTTACAGTCTCTT	.	31	7	40	0	.	0	0	0	0	0	4
LRRIQ3	127255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	74507594	74507594	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRIQ3-92	NM_001105659	exon7	c.G1021T	p.V341L	CATCCACAATTTC	.	31	9	19	0	.	0	0	0	0	0	5
LHX8	431707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	75622718	75622718	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LHX8-93	NM_001001933	exon9	c.C951A	p.P317P	CGTGCCCCAAGAT	.	237	58	205	0	.	0	0	0	0	0	5
ASB17	127247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	76397853	76397853	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASB17-227	NM_080868	exon1	c.T124G	p.C42G	CGTAACAGTGATA	.	166	38	121	0	.	0	0	0	0	0	5
ST6GALNAC3	256435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	76877898	76877898	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ST6GALNAC3-95	NM_001160011	exon3	c.C419T	p.P140L	AAAACCCTGATTA	.	198	90	189	0	.	0	0	0	0	0	5
AK5	26289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	77759610	77759610	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AK5-227	NM_174858	exon3	c.C380A	p.P127H	TTGATCCTACCAG	.	161	21	157	0	.	0	0	0	0	0	4
AK5	26289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	77987587	77987587	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AK5-227	NM_174858	exon12	c.T1387A	p.Y463N	GACGGCTATCCTC	.	90	43	57	0	.	0	0	0	0	0	5
LPHN2	23266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	82372734	82372734	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LPHN2-525	NM_012302	exon3	c.G106T	p.V36L	GGGCTGGTGAGGC	.	110	54	85	0	.	0	0	0	0	0	5
PRKACB	5567	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	84649726	84649726	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRKACB-1083	NM_182948	exon4	c.A385T	p.K129X	GTTGTTAAACTGA	.	125	57	115	1	.	0	0	0	0	0	3
LPAR3	23566	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	85279733	85279733	+	Silent	SNP	G	G	T	rs141619600	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LPAR3-502	NM_012152	exon3	c.C858A	p.S286S	CACGACGGAGTTG	.	192	42	149	1	G|1.000;A|0.000	0	0	0	0	0	3
ODF2L	57489	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	86841918	86841918	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ODF2L-69	NM_001007022	exon8	c.C808G	p.Q270E	ATACCTGATCTCT	.	68	16	61	0	.	0	0	0	0	0	5
GBP4	115361	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	89652054	89652054	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GBP4-90	NM_052941	exon10	c.C1669A	p.L557I	CTCTGAGAAGGTT	.	56	13	63	0	.	0	0	0	0	0	3
HFM1	164045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	91866610	91866610	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HFM1-112	NM_001017975	exon2	c.T30A	p.S10S	TTCCAAAGAAAAC	.	132	70	146	0	.	0	0	0	0	0	5
TGFBR3	7049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92182149	92182149	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TGFBR3-93	NM_003243	exon11	c.G1683T	p.L561L	GGTGAACAGGGAA	.	226	67	223	0	.	0	0	0	0	0	5
TGFBR3	7049	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	92193214	92193214	+	Splice_Site	DEL	A	A	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TGFBR3-93	NM_001195684	exon9	c.885+2T>-	.	CAACTTACAATAA	.	92	20	98	0	.	0	0	0	0	0	3
BTBD8	284697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92568096	92568096	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BTBD8-91	NM_183242	exon3	c.G414T	p.M138I	GATAATGGAGATT	.	121	57	125	0	.	0	0	0	0	0	5
SNX7	51375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	99164270	99164270	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SNX7-229	NM_015976	exon6	c.G847A	p.D283N	TATTTTGATGAAA	.	36	8	40	0	.	0	0	0	0	0	4
LPPR4	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	99764707	99764707	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LPPR4-93	NM_001166252	exon4	c.A655T	p.N219Y	TCTCTGAATGTAT	.	153	30	146	0	.	0	0	0	0	0	5
LPPR4	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	99771539	99771539	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LPPR4-93	NM_014839	exon7	c.C1265T	p.T422I	CCAATACCCCATC	.	140	43	150	0	.	0	0	0	0	0	5
LPPR4	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	99771739	99771739	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LPPR4-93	NM_014839	exon7	c.G1465T	p.G489W	AGGGTAGGGGTGA	.	318	78	344	1	.	0	0	0	0	0	3
LPPR4	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	99772033	99772033	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LPPR4-93	NM_014839	exon7	c.G1759T	p.G587C	CAGCAGGGTGTCC	.	366	102	313	1	.	0	0	0	0	0	3
LPPR4	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	99772258	99772258	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LPPR4-93	NM_014839	exon7	c.G1984T	p.E662X	ACTTACGAGCTCA	.	243	120	255	0	.	0	0	0	0	0	5
SASS6	163786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100588833	100588833	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SASS6-70	NM_194292	exon3	c.C139T	p.R47C	TCAGACGAATAAC	.	83	38	91	0	.	0	0	0	0	0	5
TRMT13	54482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100606445	100606445	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_019083	exon7	c.T539G	p.L180R	AGTTACTTGGTCC	.	83	32	95	0	.	0	0	0	0	0	5
CDC14A	8556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100964629	100964629	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDC14A-290	NM_003672	exon15	c.G1566T	p.Q522H	CTCCCAGCCAACT	.	172	44	137	0	.	0	0	0	0	0	5
COL11A1	1301	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	103345394	103345394	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL11A1-586	NM_080629	exon66	c.C5155A	p.R1719R	TTTGCCGAGCAGA	.	137	76	142	1	.	0	0	0	0	0	3
COL11A1	1301	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	103363705	103363705	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL11A1-586	NM_080629	exon57	c.C4314A	p.G1438G	ATCTTGGCCTGCA	.	156	75	126	1	.	0	0	0	0	0	4
NTNG1	22854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	108023431	108023431	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NTNG1-140	NM_001113226	exon8	c.T1589A	p.L530Q	CCACGCTGCTGGG	.	89	34	38	0	.	0	0	0	0	0	4
VAV3	10451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	108138963	108138963	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VAV3-1339	NM_006113	exon25	c.G2221T	p.E741X	CAAGTTCCTTTGG	.	59	12	51	0	.	0	0	0	0	0	4
VAV3	10451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	108417589	108417589	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VAV3-1339	NM_006113	exon2	c.G255T	p.T85T	TCCAAACGTCTCA	.	172	31	192	0	.	0	0	0	0	0	5
PRPF38B	55119	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109242505	109242505	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRPF38B-90	NM_018061	exon6	c.A1504G	p.R502G	CGTAGTAGAAGCA	.	156	43	188	1	.	0	0	0	0	0	4
AMIGO1	57463	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	110050171	110050171	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AMIGO1-136	NM_020703	exon2	c.1364delG	p.G455fs	AGCTTGCCGTTTT	.	171	38	156	0	.	0	0	0	0	0	3
GPR61	83873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110085990	110085990	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR61-91	NM_031936	exon2	c.C346T	p.R116C	GCCTGCCGCCTCT	.	97	49	99	0	.	0	0	0	0	0	5
GNAT2	2780	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110148630	110148630	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GNAT2-227	NM_005272	exon6	c.A682T	p.S228C	AGGCACTGAGGGC	.	269	57	264	1	.	0	0	0	0	0	3
KCNC4	3749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110766353	110766353	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNC4-154	NM_001039574	exon2	c.C1446A	p.A482A	CCTGGCCATGGCC	.	128	25	159	0	.	0	0	0	0	0	5
VANGL1	81839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	116206308	116206308	+	Silent	SNP	G	G	T	rs186509771	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VANGL1-226	NM_001172412	exon4	c.G231T	p.T77T	CACCACGGCCATC	.	124	33	133	0	G|0.999;A|0.000	0	0	0	0	0	5
ZNF697	90874	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	120165428	120165428	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF697-23	NM_001080470	exon3	c.G1538T	p.R513L	TGGATGCGGCGGT	.	174	81	123	1	.	0	0	0	0	0	4
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	144852481	144852481	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDE4DIP-663	NM_014644	exon44	c.C7018A	p.L2340M	ATGGCAGAGCCCT	.	102	38	44	0	.	0	0	0	0	0	4
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	144854656	144854656	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDE4DIP-663	NM_014644	exon42	c.G6814T	p.G2272X	ATTCTCCCTGGAT	.	225	29	155	0	.	0	0	0	0	0	4
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	144865885	144865885	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDE4DIP-663	NM_014644	exon35	c.C5695G	p.Q1899E	AGAGCTGAGGTAT	.	221	15	196	0	.	0	0	0	0	0	3
ITGA10	8515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145533058	145533058	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITGA10-231	NM_003637	exon11	c.G1153A	p.G385R	CAGGATGGGATTC	.	74	25	44	0	.	0	0	0	0	0	5
ITGA10	8515	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	145533059	145533059	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITGA10-231	NM_003637	exon11	c.G1154T	p.G385V	AGGATGGGATTCT	.	76	25	46	1	.	0	0	0	0	0	3
GJA8	2703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	147380254	147380254	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GJA8-138	NM_005267	exon2	c.C172T	p.Q58X	ACCCAGCAGCCTG	.	270	75	118	0	.	0	0	0	0	0	5
PSMD4	5710	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151236481	151236481	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PSMD4-90	NM_002810	exon3	c.T259C	p.C87R	ACCTTCTGCACGG	.	339	93	201	1	.	0	0	0	0	0	4
POGZ	23126	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151377850	151377850	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POGZ-93	NM_015100	exon19	c.C3661G	p.R1221G	TGCTGCGCTGGCA	.	176	29	178	1	.	0	0	0	0	0	4
POGZ	23126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151402135	151402135	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POGZ-93	NM_015100	exon5	c.G512C	p.G171A	ACAATCCCAACCT	.	152	31	71	0	.	0	0	0	0	0	5
RPTN	126638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152129433	152129433	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RPTN-68	NM_001122965	exon3	c.C142T	p.P48S	CATTTGGTCTCTG	.	107	27	67	0	.	0	0	0	0	0	5
HRNR	388697	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	152188311	152188311	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HRNR-93	NM_001009931	exon3	c.C5794T	p.Q1932X	AAGACTGACGGGA	.	1978	183	1106	2	.	0	0	0	0	0	3
FLG	2312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	152276700	152276700	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FLG-106	NM_002016	exon3	c.G10662T	p.R3554S	AGACCACCTCTCA	.	403	51	225	0	.	0	0	0	0	0	3
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152280069	152280069	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FLG-106	NM_002016	exon3	c.C7293A	p.T2431T	GGTCCCGGTCCGT	.	604	308	331	1	.	0	0	0	0	0	4
FLG	2312	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152283067	152283067	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FLG-106	NM_002016	exon3	c.G4295T	p.G1432V	CTTTCCCCTGACT	.	442	116	236	1	.	0	0	0	0	0	3
FLG2	388698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152323875	152323875	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FLG2-151	NM_001014342	exon3	c.C6387A	p.A2129A	AGATCTGGCTTGG	.	516	218	341	1	.	0	0	0	0	0	4
FLG2	388698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152326364	152326364	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FLG2-151	NM_001014342	exon3	c.T3898A	p.Y1300N	TTGGGTAGTGAGA	.	715	182	401	1	.	0	0	0	0	0	5
FLG2	388698	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	152328752	152328752	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FLG2-151	NM_001014342	exon3	c.G1510T	p.G504C	CAAAGCCAGAGGA	.	409	32	259	0	.	0	0	0	0	0	3
FLG2	388698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152329711	152329711	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FLG2-151	NM_001014342	exon3	c.C551T	p.S184F	CAGCTGGACCTGT	.	190	43	146	0	.	0	0	0	0	0	5
PGLYRP4	57115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153303417	153303417	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PGLYRP4-94	NM_020393	exon9	c.A948G	p.I316M	GGGTGGTATACCT	.	193	20	120	0	.	0	0	0	0	0	4
FAM189B	10712	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155217919	155217919	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM189B-154	NM_006589	exon11	c.G1755T	p.R585R	CAGGCCCCGACCT	.	273	141	158	1	.	0	0	0	0	0	4
TMEM79	84283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156255405	156255405	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM79-90	NM_032323	exon2	c.G388T	p.V130L	GCCTTCGTGCCTA	.	299	35	163	0	.	0	0	0	0	0	5
TSACC	128229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156316635	156316635	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_144627	exon4	c.C240T	p.A80A	GCTCGCCCAACAA	.	315	89	175	0	.	0	0	0	0	0	5
FCRL4	83417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157559043	157559043	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FCRL4-229	NM_031282	exon3	c.G258A	p.Q86Q	CCGGGCCTGGCAT	.	280	140	165	0	.	0	0	0	0	0	5
CD5L	922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157804410	157804410	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CD5L-91	NM_005894	exon4	c.C505A	p.L169I	CCCGGAGGCTCCA	.	122	30	101	0	.	0	0	0	0	0	5
CD1E	913	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158325660	158325660	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CD1E-93	NM_001042585	exon4	c.T669A	p.P223P	TGGCCCTGGCCGT	.	216	55	104	1	.	0	0	0	0	0	4
OR10T2	128360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158368349	158368349	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR10T2-70	NM_001004475	exon1	c.G908T	p.R303I	AGAACTCTTTTCA	.	153	16	85	0	.	0	0	0	0	0	4
OR10T2	128360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158369178	158369178	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR10T2-70	NM_001004475	exon1	c.C79A	p.L27M	AAAGCAGCAGCTG	.	105	60	67	0	.	0	0	0	0	0	5
OR10K2	391107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158390612	158390612	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR10K2-69	NM_001004476	exon1	c.C45G	p.L15L	GAAGCCGAGGAAG	.	184	53	114	0	.	0	0	0	0	0	5
OR10K1	391109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158435408	158435408	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR10K1-69	NM_001004473	exon1	c.C57G	p.S19S	CTCATCCCTGGCC	.	282	75	197	0	.	0	0	0	0	0	5
OR10X1	128367	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158549327	158549327	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR10X1-69	NM_001004477	exon1	c.G363T	p.L121F	AAGTCCCAAGAAG	.	638	81	411	2	.	0	0	0	0	0	4
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158589090	158589090	+	Missense_Mutation	SNP	C	C	A	rs202169454	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPTA1-142	NM_003126	exon45	c.G6452T	p.R2151I	ACCTGTCTTGCCT	.	414	43	300	0	C|0.999;T|0.001	0	0	0	0	0	5
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158590083	158590083	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPTA1-142	NM_003126	exon44	c.C6294A	p.D2098E	TTTAAAGTCTGCT	.	255	35	170	0	.	0	0	0	0	0	5
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158592778	158592778	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPTA1-142	NM_003126	exon43	c.C6115G	p.Q2039E	CCTTCTGTAGAGG	.	121	27	88	0	.	0	0	0	0	0	5
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158606464	158606464	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPTA1-142	NM_003126	exon37	c.G5277T	p.E1759D	CTCCCCCTCTAGG	.	112	29	87	0	.	0	0	0	0	0	5
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158653268	158653268	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPTA1-142	NM_003126	exon3	c.C283A	p.Q95K	GGGATTGATGCTT	.	155	60	112	0	.	0	0	0	0	0	5
OR6K2	81448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158670301	158670301	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR6K2-69	NM_001005279	exon1	c.G142T	p.V48L	GGACCACTGTGAT	.	243	75	168	0	.	0	0	0	0	0	5
OR6N1	128372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158735697	158735697	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR6N1-69	NM_001005185	exon1	c.A776G	p.Y259C	TGCACATACATGG	.	368	178	213	1	.	0	0	0	0	0	4
OR6N2	81442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158747067	158747067	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR6N2-68	NM_001005278	exon1	c.A359T	p.Y120F	CTATCATAGGCCA	.	380	54	293	0	.	0	0	0	0	0	5
DARC	2532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159175764	159175764	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DARC-659	NM_001122951	exon1	c.C541T	p.L181L	GCTGCCCTACTGA	.	184	37	120	0	.	0	0	0	0	0	5
FCER1A	2205	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	159273889	159273889	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FCER1A-524	NM_002001	exon4	c.248delC	p.A83fs	TGAATGCCAAATT	.	207	102	175	0	.	0	0	0	0	0	3
APCS	325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159558001	159558001	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	APCS-154	NM_001639	exon2	c.T175C	p.Y59H	CGAGCCTATAGTG	.	87	16	41	0	.	0	0	0	0	0	5
FCRL6	343413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159779392	159779392	+	Missense_Mutation	SNP	C	C	G	rs146386650	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FCRL6-93	NM_001004310	exon5	c.C805G	p.Q269E	TCAGAACAGGATG	.	220	58	140	0	C|1.000;T|0.000	0	0	0	0	0	5
SLAMF9	89886	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	159922196	159922196	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLAMF9-91	NM_033438	exon3	c.520delG	p.D174fs	TGCTATCCCCCCG	.	203	46	106	0	.	0	0	0	0	0	3
IGSF8	93185	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160063008	160063008	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGSF8-90	NM_052868	exon4	c.G1018T	p.A340S	AGTATGCAGCATG	.	318	37	184	1	.	0	0	0	0	0	4
ATP1A4	480	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	160124894	160124894	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP1A4-94	NM_144699	exon3	c.C267T	p.T89T	TGTTACCCCACCC	.	175	23	88	1	.	0	0	0	0	0	3
F11R	50848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160970019	160970019	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	F11R-92	NM_016946	exon5	c.G508T	p.G170W	CTATCCCATCTTT	.	173	69	85	0	.	0	0	0	0	0	5
FCGR3A	2214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161519625	161519625	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FCGR3A-91	NM_001127592	exon1	c.G10T	p.G4W	CAGCCCCTCCACC	.	302	171	192	0	.	0	0	0	0	0	5
OLFML2B	25903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161967901	161967901	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OLFML2B-69	NM_015441	exon6	c.A1188T	p.Q396H	GGTTGTTTGGAGT	.	204	32	94	0	.	0	0	0	0	0	5
OLFML2B	25903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161987209	161987209	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OLFML2B-69	NM_015441	exon3	c.G527T	p.R176L	TCCACTCGCCCCA	.	124	36	92	0	.	0	0	0	0	0	5
OLFML2B	25903	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161989832	161989832	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OLFML2B-69	NM_015441	exon2	c.G315T	p.V105V	GGTTTCCACGGTA	.	172	97	146	2	.	0	0	0	0	0	3
NOS1AP	9722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	162313643	162313643	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOS1AP-228	NM_014697	exon6	c.G472T	p.V158F	AGAATCGTTCGGA	.	434	90	301	0	.	0	0	0	0	0	5
C1orf111	284680	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	162345173	162345173	+	Missense_Mutation	SNP	G	G	C	rs139605225	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C1orf111-69	NM_182581	exon2	c.C124G	p.P42A	CAGTGGGTACTGC	.	374	28	204	0	G|0.999;T|0.000	0	0	0	0	0	3
HSD17B7	51478	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	162762484	162762484	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HSD17B7-91	NM_016371	exon2	c.C71T	p.A24V	TGCTGGCGGAAGA	.	173	22	132	0	.	0	0	0	0	0	3
HSD17B7	51478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	162766425	162766425	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HSD17B7-91	NM_016371	exon3	c.C290T	p.P97L	CTAATCCACAACT	.	145	19	121	0	.	0	0	0	0	0	4
LMX1A	4009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	165322434	165322434	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LMX1A-92	NM_001174069	exon3	c.C142T	p.L48L	GCCGCAGCAGAAA	.	169	68	87	0	.	0	0	0	0	0	5
FAM78B	149297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	166039894	166039894	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM78B-91	NM_001017961	exon2	c.C370A	p.L124M	CAACCAGGGTCAC	.	163	25	84	0	.	0	0	0	0	0	5
POGK	57645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	166816741	166816741	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POGK-91	NM_017542	exon4	c.C270A	p.F90L	CCCATTCCCTAAG	.	147	18	95	0	.	0	0	0	0	0	4
ILDR2	387597	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	166891891	166891891	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ILDR2-91	NM_199351	exon8	c.G1150T	p.A384S	GGCTTGCCCCACT	.	123	58	99	1	.	0	0	0	0	0	3
MAEL	84944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	166962004	166962004	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAEL-91	NM_032858	exon4	c.C407A	p.P136H	TCCTCCCTTGTGA	.	41	5	25	0	.	0	0	0	0	0	4
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167086597	167086597	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DUSP27-71	NM_001080426	exon3	c.G238T	p.E80X	GACGCAGAGTGTC	.	202	113	138	0	.	0	0	0	0	0	5
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167096341	167096341	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DUSP27-71	NM_001080426	exon5	c.C1973A	p.P658H	GCATTCCCCTGTC	.	416	64	255	0	.	0	0	0	0	0	5
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167096491	167096491	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DUSP27-71	NM_001080426	exon5	c.C2123A	p.P708H	CCCTGCCTAACCT	.	274	119	161	0	.	0	0	0	0	0	5
RCSD1	92241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167659302	167659302	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RCSD1-517	NM_052862	exon4	c.C215A	p.A72E	CCAATGCGAGCCA	.	256	31	157	0	.	0	0	0	0	0	5
XCL1	6375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	168550362	168550362	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	XCL1-90	NM_002995	exon3	c.C249A	p.S83R	CAGGAGCATGGAC	.	477	173	326	0	.	0	0	0	0	0	5
KIFAP3	22920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	170015874	170015874	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIFAP3-91	NM_014970	exon3	c.C298T	p.R100C	AATCACGGCGGTT	.	278	58	161	0	.	0	0	0	0	0	5
PRRX1	5396	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	170633519	170633519	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRRX1-659	NM_006902	exon1	c.G160C	p.D54H	CAGGCGGATGAGA	.	616	72	177	0	.	0	0	0	0	0	4
TNN	63923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175046899	175046899	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNN-138	NM_022093	exon2	c.G345T	p.L115L	GAAGCTGGAGGAA	.	459	126	311	0	.	0	0	0	0	0	5
TNN	63923	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175086185	175086185	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNN-138	NM_022093	exon10	c.T2230A	p.S744T	TACACCTCTGCCA	.	421	54	291	1	.	0	0	0	0	0	4
TNN	63923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175092664	175092664	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNN-138	NM_022093	exon12	c.A2779T	p.R927W	GAGACCAGGGAGG	.	444	100	309	0	.	0	0	0	0	0	5
TNN	63923	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	175116153	175116153	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNN-138	NM_022093	exon19	c.G3846T	p.E1282D	CAGGGAGCCTGTC	.	338	99	193	1	.	0	0	0	0	0	3
TNR	7143	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175362928	175362928	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNR-324	NM_003285	exon6	c.C1344A	p.S448R	AATGAAGCTGATT	.	227	72	149	1	.	0	0	0	0	0	4
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	176526124	176526124	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAPPA2-548	NM_020318	exon2	c.G666T	p.W222C	ACCTTGGCCCAAG	.	215	62	146	0	.	0	0	0	0	0	5
PAPPA2	60676	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	176564188	176564188	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAPPA2-548	NM_020318	exon3	c.G1448T	p.G483V	TCCAGGGCTTTGA	.	196	80	126	1	.	0	0	0	0	0	3
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	176769205	176769205	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAPPA2-548	NM_020318	exon21	c.G5139T	p.V1713V	CATTGTGTGCACT	.	108	10	65	0	.	0	0	0	0	0	3
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	176845691	176845691	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASTN1-319	NM_207108	exon21	c.G3445T	p.D1149Y	CATCATCCACCAC	.	296	151	209	1	.	0	0	0	0	0	4
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	176863813	176863813	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASTN1-319	NM_207108	exon17	c.C2825A	p.S942Y	GGGCAGGACGAGG	.	137	40	92	0	.	0	0	0	0	0	5
TDRD5	163589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179620086	179620086	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TDRD5-94	NM_001199091	exon12	c.G1885A	p.D629N	TATGTAGATGGAA	.	340	91	165	0	.	0	0	0	0	0	5
LHX4	89884	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	180240552	180240552	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LHX4-91	NM_033343	exon4	c.C489A	p.T163T	GACCACCATCACA	.	554	134	345	2	.	0	0	0	0	0	4
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181702776	181702776	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNA1E-95	NM_000721	exon21	c.C3152A	p.P1051H	GCGAGCCTGACCT	.	973	256	531	1	.	0	0	0	0	0	5
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	181767816	181767816	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNA1E-95	NM_001205293	exon48	c.C6788A	p.S2263Y	GCCGTTCCAACAC	.	217	21	117	0	.	0	0	0	0	0	4
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	181767817	181767817	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNA1E-95	NM_001205293	exon48	c.C6789A	p.S2263S	CCGTTCCAACACC	.	217	21	114	0	.	0	0	0	0	0	3
ZNF648	127665	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	182027141	182027141	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF648-91	NM_001009992	exon2	c.C5A	p.A2E	ACTTGTGCCATGA	.	280	100	164	1	.	0	0	0	0	0	3
RGSL1	353299	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	182500036	182500036	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RGSL1-226	NM_001137669	exon13	c.2355delG	p.Q785fs	CCTACAGGAATCC	.	97	45	53	0	.	0	0	0	0	0	3
LAMC2	3918	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	183195953	183195953	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LAMC2-93	NM_005562	exon9	c.G1187T	p.C396F	AGGATTGTGCTTC	.	217	17	163	0	.	0	0	0	0	0	3
TRMT1L	81627	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	185112534	185112534	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRMT1L-92	NM_030934	exon7	c.G814A	p.E272K	GTTCCTCAGCCAA	.	296	42	198	2	.	0	0	0	0	0	3
PLA2G4A	5321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186880385	186880385	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLA2G4A-721	NM_024420	exon7	c.G422T	p.C141F	GCTCATGCCCAGA	.	186	63	116	0	.	0	0	0	0	0	5
FAM5C	339479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	190067548	190067548	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM5C-228	NM_199051	exon8	c.1901delA	p.K634fs	TTGGACTTGATGC	.	161	87	134	0	.	0	0	0	0	0	3
FAM5C	339479	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	190067550	190067550	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM5C-228	NM_199051	exon8	c.C1899T	p.I633I	GGACTTGATGCGA	.	155	88	130	0	.	0	0	0	0	0	3
RGS18	64407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	192127877	192127877	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RGS18-229	NM_130782	exon1	c.C110A	p.A37D	AAGAAGCCAAAAT	.	259	60	230	0	.	0	0	0	0	0	5
RGS18	64407	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	192153625	192153625	+	Missense_Mutation	SNP	C	C	A	rs200020460	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RGS18-229	NM_130782	exon5	c.C649A	p.R217S	CGATCACGCTCAT	.	250	90	243	1	C|0.999;T|0.001	0	0	0	0	0	4
RGS1	5996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	192548286	192548286	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RGS1-226	NM_002922	exon5	c.C464A	p.T155N	TCCGCACTCGAGA	.	238	59	201	0	.	0	0	0	0	0	5
CFHR3	10878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	196749007	196749007	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CFHR3-90	NM_021023	exon3	c.G334C	p.V112L	ACAGAAGTTGCCT	.	618	300	414	0	.	0	0	0	0	0	5
CFHR2	3080	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	196920020	196920020	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CFHR2-93	NM_005666	exon3	c.G292C	p.E98Q	CATTCTGAATCTT	.	204	17	155	0	.	0	0	0	0	0	3
CFHR5	81494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	196964954	196964954	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CFHR5-154	NM_030787	exon5	c.C715G	p.P239A	TGCAATCCTAATT	.	289	142	200	0	.	0	0	0	0	0	5
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197059995	197059995	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASPM-615	NM_018136	exon23	c.A9621T	p.G3207G	AATGATTCCACTA	.	62	23	45	0	.	0	0	0	0	0	5
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197113117	197113117	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASPM-615	NM_001206846	exon2	c.A411T	p.L137L	ATTTCCTAGTAAT	.	127	44	114	0	.	0	0	0	0	0	5
KIF21B	23046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	200943940	200943940	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF21B-96	NM_001252102	exon34	c.G4716T	p.W1572C	CACGTTCCAGACC	.	379	94	186	0	.	0	0	0	0	0	5
KIF21B	23046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	200971454	200971454	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF21B-96	NM_017596	exon9	c.G1237T	p.G413C	CAGCGCCATCCTC	.	193	53	132	0	.	0	0	0	0	0	5
CACNA1S	779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201047167	201047167	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNA1S-94	NM_000069	exon11	c.G1459T	p.G487C	GCAGGCCCAGCCC	.	625	338	369	0	.	0	0	0	0	0	5
IGFN1	91156	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201181975	201181975	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGFN1-71	NM_001164586	exon12	c.G7954T	p.G2652C	GCTTCCGGTTCTC	.	242	137	148	1	.	0	0	0	0	0	3
KDM5B	10765	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202715062	202715062	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KDM5B-273	NM_006618	exon16	c.G2247T	p.K749N	TCGAAGCTTCAAT	.	120	33	84	1	.	0	0	0	0	0	4
ADIPOR1	51094	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	202915739	202915739	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADIPOR1-90	NM_015999	exon5	c.259-1G>T	.	CCAGACCTAGAAC	.	367	68	217	1	.	0	0	0	0	0	3
PPFIA4	8497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203028334	203028334	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPFIA4-230	NM_015053	exon7	c.G918T	p.M306I	CAGTATGCAGGAG	.	811	294	468	0	.	0	0	0	0	0	5
BTG2	7832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203276418	203276418	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BTG2-651	NM_006763	exon2	c.C329T	p.S110F	AGGTGTCCTACCG	.	140	39	104	0	.	0	0	0	0	0	5
PRELP	5549	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	203452438	203452438	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRELP-516	NM_201348	exon2	c.C126A	p.P42P	CAGGCCCACACCC	.	245	107	140	1	.	0	0	0	0	0	3
PRELP	5549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203452762	203452762	+	Silent	SNP	C	C	T	rs200569548	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRELP-516	NM_201348	exon2	c.C450T	p.P150P	ACTGCCCGGCCTG	.	316	106	202	0	C|0.999;T|0.000	0	0	0	0	0	5
LAX1	54900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203743202	203743202	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LAX1-514	NM_017773	exon5	c.C590A	p.P197H	ATGTCCCCACAGC	.	196	66	99	0	.	0	0	0	0	0	5
ZC3H11A	9877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203807096	203807096	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZC3H11A-515	NM_014827	exon13	c.G877T	p.G293C	ATAGGCGGTGACA	.	246	115	190	0	.	0	0	0	0	0	5
NFASC	23114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	204937426	204937426	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NFASC-139	NM_001160332	exon9	c.C789A	p.T263T	GGGCACCGCGAGC	.	226	98	136	0	.	0	0	0	0	0	5
NFASC	23114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	204966446	204966446	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NFASC-139	NM_001005388	exon25	c.C2931A	p.V977V	CACCGTCGCCACA	.	477	166	338	1	.	0	0	0	0	0	5
CNTN2	6900	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	205039030	205039030	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTN2-91	NM_005076	exon18	c.T2272A	p.W758R	ACTCACTGGCAGA	.	549	66	258	2	.	0	0	0	0	0	3
FAIM3	9214	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207087142	207087142	+	Missense_Mutation	SNP	C	C	A	rs200225589	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAIM3-90	NM_001193338	exon2	c.G335T	p.R112L	TTTCCCCGGTCTG	.	212	80	116	1	C|0.999;T|0.000	0	0	0	0	0	3
FCAMR	83953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207139094	207139094	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FCAMR-91	NM_032029	exon4	c.G279T	p.S93S	GAGGGGCGAGGAA	.	235	85	168	0	.	0	0	0	0	0	5
CR2	1380	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207649601	207649601	+	Silent	SNP	G	G	A	rs184057547	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CR2-232	NM_001006658	exon15	c.G2739A	p.P913P	ACCTCCGCCTAAG	.	274	43	177	1	G|0.999;A|0.000	0	0	0	0	0	3
CR1	1378	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207753724	207753724	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CR1-93	NM_000651	exon30	c.C5076A	p.P1692P	CACACCCCAGGGA	.	285	72	160	1	.	0	0	0	0	0	3
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	208202235	208202235	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLXNA2-92	NM_025179	exon30	c.C5378G	p.S1793C	GAGGGGGAGTCCT	.	333	43	197	0	.	0	0	0	0	0	4
LAMB3	3914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	209795997	209795997	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LAMB3-156	NM_000228	exon18	c.A2585G	p.Q862R	TGAATCTGTGAGG	.	200	60	134	0	.	0	0	0	0	0	5
LAMB3	3914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	209796407	209796407	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LAMB3-156	NM_000228	exon17	c.G2476T	p.G826C	CCCCACCGGCCCT	.	425	208	280	1	.	0	0	0	0	0	5
TRAF3IP3	80342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	209936416	209936416	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRAF3IP3-291	NM_025228	exon6	c.C555A	p.Y185X	CAGTTACGGAGTT	.	141	54	101	0	.	0	0	0	0	0	5
TRAF3IP3	80342	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	209936707	209936707	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRAF3IP3-291	NM_025228	exon7	c.577-1G>A	.	TCTCCAGGAAATC	.	226	67	147	1	.	0	0	0	0	0	3
IRF6	3664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	209964145	209964145	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IRF6-92	NM_006147	exon7	c.T755C	p.F252S	CCATAGAAGAGTC	.	161	46	88	0	.	0	0	0	0	0	5
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	210857441	210857441	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNH1-94	NM_172362	exon11	c.G2152C	p.E718Q	GTTCTTCCTCTTC	.	55	9	31	0	.	0	0	0	0	0	4
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	210971060	210971060	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNH1-94	NM_172362	exon9	c.G1705T	p.V569L	GGTGCACGCAGAT	.	400	207	233	0	.	0	0	0	0	0	5
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	211264025	211264025	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNH1-94	NM_002238	exon4	c.T318A	p.P106P	CCACACAGGTGTC	.	83	47	43	0	.	0	0	0	0	0	5
INTS7	25896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	212141280	212141280	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	INTS7-90	NM_001199812	exon15	c.A2054G	p.Y685C	TCTCCATATCGAG	.	60	24	23	0	.	0	0	0	0	0	5
KCNK2	3776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	215408289	215408289	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNK2-90	NM_001017425	exon7	c.T1082A	p.I361N	CCTCCATCAAGCG	.	112	50	91	0	.	0	0	0	0	0	5
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	215822060	215822060	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USH2A-115	NM_206933	exon66	c.T14392C	p.F4798L	TAGTGAAGGCTTG	.	249	128	141	0	.	0	0	0	0	0	5
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	215953376	215953376	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USH2A-115	NM_206933	exon55	c.C10748A	p.A3583E	GTAGCTGCAACTA	.	168	22	121	0	.	0	0	0	0	0	4
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	215963428	215963428	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USH2A-115	NM_206933	exon51	c.C10155A	p.D3385E	AATCTTGTCAGAG	.	85	20	60	0	.	0	0	0	0	0	5
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216052284	216052284	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USH2A-115	NM_206933	exon42	c.G8380T	p.V2794F	AAGCAACAATGGT	.	329	166	209	0	.	0	0	0	0	0	5
USH2A	7399	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	216144042	216144042	+	Nonsense_Mutation	SNP	G	G	T	rs147615382	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USH2A-115	NM_206933	exon36	c.C6882A	p.Y2294X	AAATCCGTAAGCA	.	225	32	138	1	G|1.000;A|0.000	0	0	0	0	0	3
USH2A	7399	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216390770	216390770	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USH2A-115	NM_206933	exon15	c.C3116A	p.A1039E	TGGCTTGCACTGG	.	268	82	220	1	.	0	0	0	0	0	4
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216498841	216498841	+	Silent	SNP	G	G	T	rs111033272	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USH2A-115	NM_206933	exon6	c.C949A	p.R317R	AGTACCGCTGTGC	.	175	76	113	0	.	0	0	0	0	0	5
TGFB2	7042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	218607682	218607682	+	Silent	SNP	A	A	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TGFB2-710	NM_001135599	exon5	c.A730C	p.R244R	CCAGACAGGAACC	.	161	22	98	0	.	0	0	0	0	0	4
EPRS	2058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220152840	220152840	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPRS-92	NM_004446	exon27	c.A3829C	p.T1277P	TTCGAGTTGTCAG	.	192	108	105	0	.	0	0	0	0	0	5
EPRS	2058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220178699	220178699	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPRS-92	NM_004446	exon16	c.G1954T	p.E652X	GCTCTTCATGCTG	.	49	20	21	0	.	0	0	0	0	0	5
BPNT1	10380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220247364	220247364	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BPNT1-91	NM_006085	exon3	c.G170A	p.S57N	CATATGCTCATCT	.	159	34	95	0	.	0	0	0	0	0	5
HHIPL2	79802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	222705308	222705308	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HHIPL2-69	NM_024746	exon6	c.G1723A	p.G575R	TGTTACCTGCTTC	.	145	49	77	0	.	0	0	0	0	0	5
DNAH14	127602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	225267153	225267153	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH14-23	NM_001373	exon18	c.G2669T	p.S890I	AGTTAAGTAAAAT	.	256	38	220	0	.	0	0	0	0	0	5
CDC42BPA	8476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	227261686	227261686	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDC42BPA-549	NM_003607	exon19	c.G2614C	p.A872P	GTTTCGCAAAACG	.	56	17	48	0	.	0	0	0	0	0	5
PRSS38	339501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228005027	228005027	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRSS38-92	NM_183062	exon3	c.G429C	p.M143I	TGAGATGTACCAC	.	221	53	129	0	.	0	0	0	0	0	5
OBSCN	84033	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	228469788	228469788	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OBSCN-403	NM_001271223	exon36	c.G9639T	p.Q3213H	CTTCCAGGCCACA	.	543	322	368	2	.	0	0	0	0	0	3
OBSCN	84033	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228487844	228487844	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OBSCN-403	NM_001271223	exon51	c.G13736A	p.R4579K	CTGTCAGGGGTAA	.	82	16	48	0	.	0	0	0	0	0	3
OBSCN	84033	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228496916	228496916	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OBSCN-403	NM_001271223	exon59	c.G15727T	p.G5243X	GCTTTAGGAGGGG	.	365	98	232	1	.	0	0	0	0	0	3
PGBD5	79605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	230468646	230468646	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PGBD5-93	NM_001258311	exon5	c.G1217A	p.W406X	TTGTACCAGCAGA	.	358	177	180	0	.	0	0	0	0	0	5
TRIM67	440730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231349591	231349591	+	Silent	SNP	C	C	A	rs200465476	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRIM67-229	NM_001004342	exon9	c.C2154A	p.T718T	GGCCACCGTGGGC	.	666	345	383	0	C|0.998;T|0.002	0	0	0	0	0	5
DISC1	27185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231885794	231885794	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DISC1-91	NM_001164537	exon5	c.G1336C	p.A446P	GTCCAGGCTGCCT	.	276	74	158	0	.	0	0	0	0	0	5
ARID4B	51742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	235357437	235357437	+	Silent	SNP	T	T	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARID4B-228	NM_016374	exon19	c.A2016C	p.T672T	TGGATTTGTCTGA	.	107	54	69	0	.	0	0	0	0	0	5
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	235904873	235904873	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LYST-143	NM_000081	exon31	c.G8207C	p.C2736S	TCCTTACAAGACC	.	189	42	128	0	.	0	0	0	0	0	5
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	235966313	235966313	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LYST-143	NM_000081	exon8	c.G3607C	p.E1203Q	CAGCTTCTTCTGA	.	69	8	45	0	.	0	0	0	0	0	4
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	235972428	235972428	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LYST-143	NM_000081	exon5	c.G1690T	p.A564S	AGGAAGCCTGCTG	.	238	124	135	0	.	0	0	0	0	0	5
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	235973763	235973763	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LYST-143	NM_000081	exon5	c.C355G	p.Q119E	TTTCCTGAGTGGA	.	50	15	32	0	.	0	0	0	0	0	5
ACTN2	88	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236902766	236902766	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACTN2-95	NM_001103	exon10	c.G1041C	p.T347T	CAACACGCTGCAG	.	274	139	170	1	.	0	0	0	0	0	4
ACTN2	88	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236902815	236902815	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACTN2-95	NM_001103	exon10	c.G1090C	p.E364Q	CCCTCCGAGGGCA	.	193	54	128	0	.	0	0	0	0	0	5
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237664056	237664056	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RYR2-158	NM_001035	exon21	c.G2249T	p.R750I	TGTTAAGAACTGA	.	237	59	161	0	.	0	0	0	0	0	5
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237811775	237811775	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RYR2-158	NM_001035	exon49	c.G7374T	p.A2458A	GTCTGCGGGGTTT	.	269	33	179	0	.	0	0	0	0	0	5
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237870480	237870480	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RYR2-158	NM_001035	exon68	c.A9812T	p.E3271V	ACTCAGAGCACAT	.	271	72	173	0	.	0	0	0	0	0	5
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237890397	237890397	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RYR2-158	NM_001035	exon76	c.C10736G	p.P3579R	AACATCCTCAGAG	.	119	51	74	0	.	0	0	0	0	0	5
RYR2	6262	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	237947789	237947789	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RYR2-158	NM_001035	exon90	c.C12777T	p.L4259L	AATGCTCAGTCTG	.	157	42	128	1	.	0	0	0	0	0	3
RYR2	6262	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237947964	237947964	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RYR2-158	NM_001035	exon90	c.C12952A	p.L4318I	GGAAGCCTCGTCG	.	182	93	104	0	.	0	0	0	0	0	4
ZP4	57829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	238048794	238048794	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZP4-93	NM_021186	exon8	c.C1057G	p.L353V	TGTGAAGGATGGA	.	387	57	262	0	.	0	0	0	0	0	5
ZP4	57829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	238049161	238049161	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZP4-93	NM_021186	exon7	c.G865T	p.V289L	TACTTACTGAGTA	.	182	29	134	0	.	0	0	0	0	0	5
FMN2	56776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	240371788	240371788	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FMN2-145	NM_020066	exon5	c.C3676A	p.P1226T	CCACTCCCTCCAC	.	214	71	142	0	.	0	0	0	0	0	4
KMO	8564	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	241725612	241725612	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KMO-92	NM_003679	exon7	c.A595T	p.I199F	TTGACTATTCCAC	.	422	155	229	1	.	0	0	0	0	0	4
WDR64	128025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	241846794	241846794	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDR64-91	NM_144625	exon6	c.T600C	p.N200N	GGAAAATTATTTT	.	98	21	82	0	.	0	0	0	0	0	5
CEP170	9859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	243349332	243349332	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CEP170-93	NM_014812	exon10	c.G1315T	p.G439W	ATTTCCCATGTGG	.	305	116	218	0	.	0	0	0	0	0	5
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	245766029	245766029	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF26B-25	NM_018012	exon6	c.C1501G	p.Q501E	GGCAACCAGGTTC	.	315	29	164	0	.	0	0	0	0	0	3
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	245849362	245849362	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF26B-25	NM_018012	exon12	c.C3077A	p.P1026Q	GCGTCCCGGGCAG	.	181	77	12	0	.	0	0	0	0	0	4
KIF26B	55083	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	245849536	245849536	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF26B-25	NM_018012	exon12	c.C3251A	p.S1084Y	CCAGCTCTCCTTC	.	366	208	171	1	.	0	0	0	0	0	3
OR2C3	81472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247694914	247694914	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2C3-70	NM_198074	exon2	c.C900G	p.S300R	GAGGGCGCTCTTC	.	274	83	121	0	.	0	0	0	0	0	5
OR2G3	81469	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247769018	247769018	+	Missense_Mutation	SNP	C	C	A	rs200831993	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2G3-68	NM_001001914	exon1	c.C131A	p.T44N	ACTTCACCATAAT	.	208	54	123	2	C|0.999;A|0.001	0	0	0	0	0	3
OR2G3	81469	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247769252	247769252	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2G3-68	NM_001001914	exon1	c.G365A	p.R122Q	TGGATCGGTACAT	.	379	47	222	1	.	0	0	0	0	0	4
OR11L1	391189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248004443	248004443	+	Nonsense_Mutation	SNP	G	G	T	rs201677584	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR11L1-71	NM_001001959	exon1	c.C756A	p.Y252X	GGTCCCGTAGTAG	.	332	132	188	0	G|0.999;A|0.000	0	0	0	0	0	5
TRIM58	25893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248039228	248039228	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRIM58-96	NM_015431	exon6	c.G898T	p.A300S	GCCACGGCGCACC	.	127	12	59	0	.	0	0	0	0	0	4
OR2L8	391190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248113085	248113085	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2L8-70	NM_001001963	exon1	c.C926A	p.S309Y	TCTGCTCTGTGAA	.	41	24	29	0	.	0	0	0	0	0	4
OR2L5	81466	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	248185406	248185406	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001258284	exon1	c.C157G	p.H53D	GACACCCATCTCC	.	251	84	180	0	.	0	0	0	0	0	3
OR2L2	26246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248201688	248201688	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2L2-70	NM_001004686	exon1	c.G119T	p.G40V	TAATTGGAAATCT	.	259	34	187	0	.	0	0	0	0	0	5
OR2L13	284521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248263017	248263017	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2L13-70	NM_175911	exon3	c.C340A	p.L114M	TTACTCCTGACCT	.	174	29	91	0	.	0	0	0	0	0	5
OR2L13	284521	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	248263390	248263390	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2L13-70	NM_175911	exon3	c.713delC	p.T238fs	CCTTCACCACCAT	.	154	83	98	0	.	0	0	0	0	0	3
OR2L13	284521	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248263394	248263394	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2L13-70	NM_175911	exon3	c.C717G	p.T239T	CACCACCATTTCA	.	157	38	95	0	.	0	0	0	0	0	4
OR2M5	127059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248308676	248308676	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2M5-71	NM_001004690	exon1	c.C227A	p.S76Y	TCTGCTCTACCGT	.	463	57	285	0	.	0	0	0	0	0	5
OR2M2	391194	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248343672	248343672	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2M2-72	NM_001004688	exon1	c.C385G	p.P129A	TGCCACCCTCTAA	.	233	46	174	1	.	0	0	0	0	0	4
OR2M3	127062	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248366445	248366445	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2M3-70	NM_001004689	exon1	c.T76A	p.F26I	CACACCTTCCTCT	.	615	160	362	1	.	0	0	0	0	0	3
OR2M3	127062	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248366542	248366542	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2M3-70	NM_001004689	exon1	c.C173G	p.P58R	ACACCCCCATGTA	.	494	146	296	1	.	0	0	0	0	0	3
OR2M4	26245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248402254	248402254	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2M4-113	NM_017504	exon1	c.C24T	p.F8F	GACCTTCAACTCC	.	305	153	167	0	.	0	0	0	0	0	5
OR2T12	127064	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248458292	248458292	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2T12-71	NM_001004692	exon1	c.A589T	p.M197L	TGTACATGGCGTT	.	1588	190	807	0	.	0	0	0	0	0	4
OR14C36	127066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248512583	248512583	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR14C36-48	NM_001001918	exon1	c.C507A	p.S169S	TCGGTCCAACGTT	.	119	57	85	0	.	0	0	0	0	0	5
OR2T6	254879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248551108	248551108	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2T6-71	NM_001005471	exon1	c.T199A	p.S67T	CACCTCTCCGTCA	.	345	186	219	0	.	0	0	0	0	0	5
OR2T1	26696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248569879	248569879	+	Missense_Mutation	SNP	T	T	C	rs138350213	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2T1-69	NM_030904	exon1	c.T584C	p.I195T	TGATTATAGCAGG	.	248	107	139	0	T|0.999;C|0.001	0	0	0	0	0	5
OR2T10	127069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248756309	248756309	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2T10-69	NM_001004693	exon1	c.C761T	p.A254V	ATAGCAGCTCCAT	.	256	39	202	0	.	0	0	0	0	0	5
OR2T10	127069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248756494	248756494	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2T10-69	NM_001004693	exon1	c.C576A	p.T192T	AAGTGAGGTGTCT	.	392	246	343	1	.	0	0	0	0	0	4
OR2T10	127069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248756527	248756527	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2T10-69	NM_001004693	exon1	c.C543A	p.V181V	AGCAGGGACCTCA	.	441	74	375	0	.	0	0	0	0	0	5
OR2T10	127069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248756878	248756878	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2T10-69	NM_001004693	exon1	c.C192A	p.N64K	GAGCTGGTTTATA	.	281	153	266	1	.	0	0	0	0	0	4
OR2T11	127077	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248790268	248790268	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2T11-69	NM_001001964	exon1	c.C162A	p.T54T	CATGGGGGTGTGG	.	240	115	158	1	.	0	0	0	0	0	3
OR2T11	127077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248790331	248790331	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2T11-69	NM_001001964	exon1	c.G99T	p.L33F	GGCCCCCAAGAAA	.	196	27	135	0	.	0	0	0	0	0	4
AKR1C4	1109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5254964	5254964	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AKR1C4-91	NM_001818	exon7	c.C688A	p.P230T	GTGGACCCAAACT	.	224	81	169	0	.	0	0	0	0	0	5
PRKCQ	5588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	6521128	6521128	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRKCQ-1380	NM_006257	exon13	c.1180-1G>T	.	GAAGACCTAGAAG	.	138	45	114	0	.	0	0	0	0	0	5
ITIH5	80760	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	7621911	7621911	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITIH5-92	NM_001001851	exon9	c.C1225G	p.P409A	CCGTGGGCTTCCC	.	139	50	83	1	.	0	0	0	0	0	3
ITIH5	80760	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	7659227	7659227	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITIH5-92	NM_001001851	exon6	c.671delC	p.P224fs	GTAGATGGGGGAG	.	50	22	56	0	.	0	0	0	0	0	3
ITIH2	3698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	7763735	7763735	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITIH2-93	NM_002216	exon8	c.C862A	p.L288M	GGTGAACTGGAGG	.	219	76	191	0	.	0	0	0	0	0	5
ATP5C1	509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	7841035	7841035	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP5C1-90	NM_005174	exon4	c.G306C	p.L102L	AGGACTGTGTGGT	.	306	85	306	0	.	0	0	0	0	0	5
UPF2	26019	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	12046670	12046670	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UPF2-515	NM_080599	exon5	c.G1363T	p.E455X	CACCTTCCAAGTC	.	75	35	68	1	.	0	0	0	0	0	3
UCMA	221044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	13275734	13275734	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UCMA-90	NM_145314	exon3	c.124+1G>T	.	CACTCACCTTCAC	.	84	30	67	0	.	0	0	0	0	0	4
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	16949626	16949626	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CUBN-166	NM_001081	exon49	c.G7586A	p.S2529N	TTCACACTACTAC	.	190	71	163	0	.	0	0	0	0	0	5
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	16970184	16970184	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CUBN-166	NM_001081	exon41	c.G6243C	p.R2081S	GCCTGCCCTGGTT	.	59	32	65	0	.	0	0	0	0	0	5
PTPLA	9200	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17636354	17636354	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPLA-226	NM_014241	exon6	c.G634A	p.V212I	CTCCAACAGGATA	.	66	21	66	1	.	0	0	0	0	0	4
MRC1	4360	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	18138668	18138668	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MRC1-68	NM_002438	exon7	c.C1224G	p.D408E	ATTGGACTTTATT	.	311	235	306	1	.	0	0	0	0	0	3
SLC39A12	221074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	18254445	18254445	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC39A12-154	NM_152725	exon4	c.G577T	p.G193X	AAATCTGGAATAG	.	49	12	62	0	.	0	0	0	0	0	5
MSRB2	22921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	23408289	23408289	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MSRB2-90	NM_012228	exon4	c.G353A	p.G118D	CTCATGGTACGTC	.	153	54	116	0	.	0	0	0	0	0	5
GPR158	57512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	25701255	25701255	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR158-141	NM_020752	exon4	c.G1188T	p.R396S	TTGCAGGGAGGGC	.	242	86	206	0	.	0	0	0	0	0	5
GPR158	57512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	25839904	25839904	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR158-141	NM_020752	exon6	c.1405-1G>T	.	CCCACAGGTTGTT	.	160	52	118	0	.	0	0	0	0	0	4
GPR158	57512	ucsc.edu;bcgsc.ca;mdanderson.org	37	10	25861668	25861668	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR158-141	NM_020752	exon7	c.G1605A	p.L535L	ACTCTTGGTAGTG	.	233	71	203	2	.	0	0	0	0	0	3
GPR158	57512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	25885596	25885596	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR158-141	NM_020752	exon10	c.C2023G	p.R675G	AACCCACGAGATG	.	125	41	141	0	.	0	0	0	0	0	5
GPR158	57512	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	25887095	25887095	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR158-141	NM_020752	exon11	c.C2540A	p.S847Y	AAAATTCCACACT	.	152	47	169	1	.	0	0	0	0	0	3
MYO3A	53904	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	26459432	26459432	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO3A-1007	NM_017433	exon29	c.A3362T	p.Q1121L	CTGATCAGGAATT	.	250	64	273	0	.	0	0	0	0	0	4
ZEB1	6935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	31750115	31750115	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZEB1-518	NM_001174093	exon2	c.G208T	p.G70W	TTACCAGGGAGGA	.	279	103	240	0	.	0	0	0	0	0	5
ANKRD30A	91074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	37422904	37422904	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD30A-161	NM_052997	exon5	c.G510T	p.Q170H	TCTTCAGCAAAAT	.	152	66	157	0	.	0	0	0	0	0	5
ANKRD30A	91074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	37508068	37508068	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD30A-161	NM_052997	exon34	c.A3260G	p.N1087S	AAAAGAATGCTGA	.	252	49	240	0	.	0	0	0	0	0	5
ZNF33A	7581	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	38305844	38305844	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF33A-93	NM_006954	exon3	c.G55T	p.V19L	GTGACTGTGGGCT	.	319	107	286	1	.	0	0	0	0	0	4
RET	5979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43609034	43609034	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RET-4507	NM_020630	exon10	c.G1790T	p.G597V	AGCCTGGGGAGCC	.	33	14	21	0	.	0	0	0	0	0	5
RASGEF1A	221002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43692433	43692433	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RASGEF1A-227	NM_145313	exon11	c.A1339T	p.S447C	CCTCGCTGTAGAT	.	150	62	154	0	.	0	0	0	0	0	5
PPYR1	5540	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	47087507	47087507	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPYR1-524	NM_005972	exon3	c.C724A	p.Q242K	CGCCTGCAGAGGC	.	131	28	121	0	.	0	0	0	0	0	4
ARHGAP22	58504	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	49658873	49658873	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGAP22-228	NM_001256024	exon9	c.G1347C	p.R449R	CGGCTGCCGGAAG	.	186	68	106	0	.	0	0	0	0	0	4
WDFY4	57705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	49918000	49918000	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDFY4-22	NM_020945	exon2	c.C223A	p.L75I	CTCCCCCTATTCC	.	45	16	57	0	.	0	0	0	0	0	5
WDFY4	57705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	49934093	49934093	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDFY4-22	NM_020945	exon6	c.C759G	p.L253L	GAACCTCAGCATC	.	170	31	119	0	.	0	0	0	0	0	5
WDFY4	57705	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	49951243	49951243	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDFY4-22	NM_020945	exon12	c.G2109T	p.R703S	CTTCAGGAGGAAT	.	140	57	178	1	.	0	0	0	0	0	3
WDFY4	57705	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	50098737	50098737	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDFY4-22	NM_020945	exon44	c.G7281A	p.T2427T	TCCCACGGGTGAT	.	292	95	273	1	.	0	0	0	0	0	3
FAM170B	170370	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	50341914	50341914	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001164484	exon1	c.G50C	p.G17A	GTGGTCCCATCGG	.	189	55	179	2	.	0	0	0	0	0	3
C10orf71	118461	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	50530784	50530784	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C10orf71-90	NM_001135196	exon3	c.G194T	p.G65V	TGTTTGGGACTTT	.	264	92	247	1	.	0	0	0	0	0	3
C10orf71	118461	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	10	50532949	50532949	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C10orf71-90	NM_001135196	exon3	c.G2359T	p.G787W	AGCAATGGGCACG	.	197	68	153	0	.	0	0	0	0	0	3
SLC18A3	6572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50819769	50819769	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC18A3-92	NM_003055	exon1	c.G983T	p.G328V	AGATGGGCATGGC	.	59	17	39	0	.	0	0	0	0	0	5
CHAT	1103	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50854688	50854688	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHAT-514	NM_020549	exon8	c.G1249C	p.G417R	AAGAACGGGGCCA	.	273	86	235	0	.	0	0	0	0	0	4
PARG	8505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	51040918	51040918	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PARG-948	NM_003631	exon16	c.G2578T	p.E860X	GATTCTCTGAAGA	.	163	52	145	0	.	0	0	0	0	0	5
SGMS1	259230	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	52067049	52067049	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SGMS1-227	NM_147156	exon11	c.G1095C	p.L365L	CCTGGCCAGGAGG	.	112	54	80	2	.	0	0	0	0	0	3
A1CF	29974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	52573773	52573773	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	A1CF-68	NM_001198819	exon12	c.C1215A	p.G405G	ACGGCCGCCCAGT	.	93	32	83	0	.	0	0	0	0	0	5
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	56106181	56106181	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH15-193	NM_001142763	exon7	c.G553C	p.D185H	CATCATCTATATC	.	75	15	56	0	.	0	0	0	0	0	5
BICC1	80114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	60562966	60562966	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BICC1-72	NM_001080512	exon15	c.C2145T	p.A715A	AAGGGCCCACCTT	.	108	26	152	0	.	0	0	0	0	0	5
FAM13C	220965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61029737	61029737	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM13C-70	NM_198215	exon7	c.C725A	p.S242Y	AAGATGGAGCATC	.	130	53	216	0	.	0	0	0	0	0	5
FAM13C	220965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	61112192	61112192	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM13C-70	NM_198215	exon3	c.G162T	p.L54L	TTCTACCAGAGCC	.	33	8	36	0	.	0	0	0	0	0	4
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61815615	61815615	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANK3-107	NM_020987	exon42	c.G12866C	p.G4289A	CCAGATCCATGTA	.	111	47	123	0	.	0	0	0	0	0	5
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70450767	70450767	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TET1-663	NM_030625	exon12	c.A5607T	p.S1869S	AGCCTCATGCGGG	.	96	26	74	0	.	0	0	0	0	0	5
STOX1	219736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70644278	70644278	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STOX1-92	NM_152709	exon3	c.G726T	p.Q242H	CTGTCAGTCTTGC	.	109	46	126	0	.	0	0	0	0	0	5
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73326680	73326680	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH23-563	NM_052836	exon7	c.C611A	p.T204K	AGCTCACGGTCAA	.	29	22	50	0	.	0	0	0	0	0	5
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73405591	73405591	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH23-563	NM_052836	exon12	c.C1144A	p.L382M	CAGGGCCTGAACA	.	237	96	218	0	.	0	0	0	0	0	5
CDH23	64072	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	73447457	73447457	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH23-563	NM_022124	exon18	c.G2040T	p.V680V	CTCCGTGGTGGAG	.	129	29	103	1	.	0	0	0	0	0	3
CHST3	9469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73766985	73766985	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHST3-90	NM_004273	exon3	c.G196T	p.D66Y	AGCACCGACCCAG	.	105	39	123	0	.	0	0	0	0	0	5
PPP3CB	5532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75239173	75239173	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPP3CB-226	NM_001142354	exon2	c.G188T	p.G63V	ACTCGACCTTCTT	.	107	29	126	0	.	0	0	0	0	0	5
DUSP13	51207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	76861715	76861715	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DUSP13-226	NM_001007273	exon3	c.A188T	p.Q63L	TGATGCTGTTTCT	.	56	10	62	0	.	0	0	0	0	0	4
RPS24	6229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	79814544	79814544	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RPS24-91	NM_001142285	exon5	c.G646T	p.V216F	GCACTGGTCAGAA	.	192	82	173	0	.	0	0	0	0	0	5
CDHR1	92211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	85961590	85961590	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDHR1-91	NM_001171971	exon7	c.C553A	p.R185S	GTGGACCGCCACA	.	33	16	30	0	.	0	0	0	0	0	5
BMPR1A	657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	88649911	88649911	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BMPR1A-1619	NM_004329	exon4	c.G160C	p.D54H	CCAGAGGATACCT	.	234	47	254	0	.	0	0	0	0	0	5
IFIT5	24138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	91177055	91177055	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IFIT5-90	NM_012420	exon2	c.G99A	p.E33E	GTTTGAGGTAGAA	.	125	40	138	0	.	0	0	0	0	0	5
IDE	3416	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	94239048	94239048	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IDE-92	NM_004969	exon15	c.A1870G	p.I624V	CATAGATGGTATT	.	77	26	88	1	.	0	0	0	0	0	4
ALDH18A1	5832	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	97386505	97386505	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALDH18A1-117	NM_002860	exon10	c.G1107T	p.M369I	TCGCGCCATTTCT	.	97	21	115	1	.	0	0	0	0	0	4
PIK3AP1	118788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	98355338	98355338	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIK3AP1-519	NM_152309	exon17	c.G2414C	p.R805P	AATCAGCGTCCTC	.	180	39	203	0	.	0	0	0	0	0	5
SLIT1	6585	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	98766287	98766287	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLIT1-94	NM_003061	exon32	c.C3532A	p.Q1178K	TGAACTGCAGGTA	.	229	91	212	1	.	0	0	0	0	0	3
PYROXD2	84795	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	100143584	100143584	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PYROXD2-90	NM_032709	exon16	c.G1717C	p.V573L	AGGCCACATGTGC	.	102	41	116	1	.	0	0	0	0	0	4
PYROXD2	84795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	100159880	100159880	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PYROXD2-90	NM_032709	exon5	c.G450T	p.Q150H	GGAGAACTGGGCG	.	79	32	109	0	.	0	0	0	0	0	5
CWF19L1	55280	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	101995432	101995432	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CWF19L1-90	NM_018294	exon13	c.G1464A	p.Q488Q	TCCAAACTGCAAA	.	25	6	23	0	.	0	0	0	0	0	3
PAX2	5076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	102568924	102568924	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAX2-90	NM_003987	exon8	c.C919T	p.L307L	TCGAGTCTATCTG	.	100	43	100	0	.	0	0	0	0	0	5
CALHM3	119395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105236155	105236155	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CALHM3-67	NM_001129742	exon2	c.C439A	p.Q147K	GTACCTGGCTGGG	.	425	140	254	0	.	0	0	0	0	0	4
SORCS3	22986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	106737189	106737189	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SORCS3-99	NM_014978	exon4	c.C892A	p.Q298K	TATATCCAGAGCC	.	58	9	31	0	.	0	0	0	0	0	4
SORCS3	22986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106970974	106970974	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SORCS3-99	NM_014978	exon17	c.T2341A	p.C781S	AAGGACTGCAGCC	.	216	59	186	0	.	0	0	0	0	0	5
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	108338952	108338952	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SORCS1-153	NM_001206572	exon26	c.G3429T	p.M1143I	ACTGATCATCTCT	.	115	26	76	0	.	0	0	0	0	0	5
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	108448031	108448031	+	Missense_Mutation	SNP	G	G	C	rs145364719	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SORCS1-153	NM_001206572	exon10	c.C1479G	p.I493M	ATATGTGATGAAA	.	189	26	146	0	G|1.000;A|0.000	0	0	0	0	0	5
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	108589374	108589374	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SORCS1-153	NM_001206572	exon3	c.C684A	p.T228T	CAAAATGGTTTTC	.	160	17	108	0	.	0	0	0	0	0	4
RBM20	282996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	112572474	112572474	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001134363	exon9	c.G2319T	p.K773N	TCTGAAGCAGCAG	.	159	70	98	0	.	0	0	0	0	0	5
ADRA2A	150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	112838012	112838012	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADRA2A-90	NM_000681	exon1	c.C258T	p.F86F	CCTCTTCCTGGTG	.	239	79	128	0	.	0	0	0	0	0	5
ADRA2A	150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	112838129	112838129	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADRA2A-90	NM_000681	exon1	c.G375T	p.L125L	CTACCTGGCGCTC	.	311	83	161	0	.	0	0	0	0	0	5
TDRD1	56165	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	115991245	115991245	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TDRD1-90	NM_198795	exon26	c.3539delA	p.K1180fs	TTTCAGAAACAGC	.	59	18	52	0	.	0	0	0	0	0	3
TDRD1	56165	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	10	115991247	115991247	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TDRD1-90	NM_198795	exon26	c.A3541G	p.T1181A	TCAGAAACAGCAT	.	59	17	52	0	.	0	0	0	0	0	3
ABLIM1	3983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	116201527	116201527	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABLIM1-153	NM_002313	exon18	c.C1952T	p.S651F	GTTTTAGATGATG	.	163	39	90	0	.	0	0	0	0	0	5
ABLIM1	3983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	116444073	116444073	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABLIM1-153	NM_001003407	exon1	c.C40T	p.H14Y	TGTGATGAGGGTC	.	275	63	138	0	.	0	0	0	0	0	5
GFRA1	2674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118030372	118030372	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GFRA1-93	NM_005264	exon3	c.G296T	p.C99F	CGCAGGCAGTTCT	.	152	37	83	0	.	0	0	0	0	0	5
PNLIP	5406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	118306857	118306857	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PNLIP-92	NM_000936	exon3	c.G98T	p.W33L	CCCCATGGTCAGG	.	161	21	104	0	.	0	0	0	0	0	4
PNLIP	5406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118315585	118315585	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PNLIP-92	NM_000936	exon9	c.T885G	p.D295E	CCCTGATGGCTTT	.	184	45	104	0	.	0	0	0	0	0	5
PNLIPRP1	5407	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	118350667	118350667	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PNLIPRP1-154	NM_006229	exon2	c.26delT	p.L9fs	TCACACTTTTCCT	.	69	19	38	0	.	0	0	0	0	0	3
C10orf82	143379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	118424447	118424447	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C10orf82-90	NM_144661	exon4	c.G286C	p.V96L	TCTTTACATATTT	.	46	7	32	0	.	0	0	0	0	0	4
C10orf82	143379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118425218	118425218	+	Missense_Mutation	SNP	C	C	G	rs144390968	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C10orf82-90	NM_144661	exon3	c.G175C	p.A59P	CCACTGCGCAGCA	.	260	35	149	0	C|1.000;T|0.000	0	0	0	0	0	5
VAX1	11023	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	118893665	118893665	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VAX1-92	NM_001112704	exon3	c.C859A	p.R287S	ACAGGCGGCTGGC	.	62	16	18	0	.	0	0	0	0	0	4
VAX1	11023	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	118896161	118896161	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VAX1-92	NM_001112704	exon2	c.G251T	p.G84V	ATGGACCCCTTGG	.	325	74	207	2	.	0	0	0	0	0	3
VAX1	11023	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	118897336	118897336	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VAX1-92	NM_001112704	exon1	c.C232A	p.L78M	GGACCAGGATCCG	.	146	58	50	0	.	0	0	0	0	0	4
KCNK18	338567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118969655	118969655	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNK18-91	NM_181840	exon3	c.C1000A	p.P334T	GAACACCCTAACT	.	316	105	199	0	.	0	0	0	0	0	5
SLC18A2	6571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	119003663	119003663	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC18A2-90	NM_003054	exon3	c.C303A	p.T101T	TCAGACCGCCACA	.	231	41	135	0	.	0	0	0	0	0	5
EMX2	2018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	119305183	119305183	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EMX2-90	NM_004098	exon2	c.G447T	p.A149A	CAACGCGCTGGCC	.	606	223	410	1	.	0	0	0	0	0	5
PRLHR	2834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	120353662	120353662	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRLHR-90	NM_004248	exon2	c.C1095G	p.T365T	GCTGACGGTCATA	.	331	53	161	0	.	0	0	0	0	0	5
PRLHR	2834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	120354576	120354576	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRLHR-90	NM_004248	exon2	c.G181T	p.G61W	TCAGCCCCTTCAG	.	372	97	80	0	.	0	0	0	0	0	5
SFXN4	119559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	120921874	120921874	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SFXN4-91	NM_213649	exon3	c.G230A	p.S77N	GCAGGGCTGGAAA	.	329	122	195	0	.	0	0	0	0	0	5
SEC23IP	11196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	121685604	121685604	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEC23IP-93	NM_007190	exon13	c.G2178T	p.E726D	ACAAGAGCAAAGT	.	168	68	134	0	.	0	0	0	0	0	5
TACC2	10579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124008228	124008228	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TACC2-296	NM_206862	exon20	c.C8463T	p.A2821A	GCAAGCCCTGGCC	.	181	33	110	0	.	0	0	0	0	0	5
DMBT1	1755	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124402801	124402801	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DMBT1-494	NM_007329	exon53	c.G7129C	p.G2377R	TACCGAGGCTGTG	.	570	143	304	2	.	0	0	0	0	0	4
HMX2	3167	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	124909282	124909282	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HMX2-90	NM_005519	exon2	c.C465A	p.V155V	CACCGTCTTTTCG	.	196	29	98	1	.	0	0	0	0	0	3
CPXM2	119587	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	125530486	125530486	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CPXM2-92	NM_198148	exon8	c.G1048T	p.G350C	TCAGGCCCTGGTG	.	247	85	146	2	.	0	0	0	0	0	3
ADAM12	8038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127806696	127806696	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAM12-716	NM_021641	exon6	c.G523T	p.V175F	CCCGGACGCTTTT	.	235	54	135	0	.	0	0	0	0	0	5
C10orf90	118611	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	128147643	128147643	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C10orf90-92	NM_001004298	exon6	c.C1863A	p.S621R	CTTCTTGCTGGTG	.	200	64	100	1	.	0	0	0	0	0	3
C10orf90	118611	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	128153420	128153420	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C10orf90-92	NM_001004298	exon4	c.G1379C	p.C460S	GACAGACAGTCAT	.	279	25	164	0	.	0	0	0	0	0	3
MGMT	4255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	131565118	131565118	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MGMT-1108	NM_002412	exon5	c.G574C	p.G192R	TCCGGAGGACTGG	.	338	41	220	0	.	0	0	0	0	0	5
EBF3	253738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	131638572	131638572	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EBF3-91	NM_001005463	exon15	c.G1561T	p.V521L	GGACCACGGGCGC	.	207	30	125	0	.	0	0	0	0	0	5
TTC40	54777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134648207	134648207	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001200049	exon48	c.G6817A	p.E2273K	GCTCCTCCAGGGG	.	239	68	154	0	.	0	0	0	0	0	5
TTC40	54777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134663902	134663902	+	Missense_Mutation	SNP	C	C	T	rs143782266	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001200049	exon41	c.G5798A	p.G1933E	AGTGCCCCGTGTG	.	346	92	103	0	C|0.999;G|0.001	0	0	0	0	0	5
TTC40	54777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134664665	134664665	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001200049	exon40	c.G5719T	p.A1907S	AGTCCGCCAGCAG	.	209	31	145	0	.	0	0	0	0	0	5
TUBGCP2	10844	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	135106162	135106162	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TUBGCP2-90	NM_001256617	exon9	c.G1139T	p.G380V	GACCCCCCAAGAC	.	226	68	113	2	.	0	0	0	0	0	3
ECHS1	1892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	135179540	135179540	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ECHS1-90	NM_004092	exon6	c.G679T	p.E227X	TTTTTTCTGCACA	.	127	28	78	0	.	0	0	0	0	0	5
MTG1	92170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	135209699	135209699	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MTG1-91	NM_138384	exon3	c.G210T	p.Q70H	GTTTCAGGAAACC	.	146	24	89	0	.	0	0	0	0	0	5
ANO9	338440	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	418479	418479	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANO9-227	NM_001012302	exon23	c.G2241A	p.M747I	ATGCCACATCTTC	.	126	60	156	1	.	0	0	0	0	0	3
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	607214	607214	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHRF1-22	NM_020901	exon14	c.A1755T	p.Q585H	CTGTCAAGGCAGG	.	45	32	21	0	.	0	0	0	0	0	5
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1269567	1269567	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_002458	exon31	c.G11457T	p.M3819I	CACCATGTCCACA	.	599	261	740	1	.	0	0	0	0	0	3
BRSK2	9024	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1464775	1464775	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BRSK2-333	NM_001256630	exon8	c.G828T	p.R276R	GAAGCGGGGCGTG	.	62	34	51	0	.	0	0	0	0	0	4
C11orf40	143501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4592668	4592668	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C11orf40-92	NM_144663	exon4	c.G639C	p.L213F	GGACTTCAAGTAG	.	37	22	70	0	.	0	0	0	0	0	5
OR51A4	401666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4968178	4968178	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR51A4-71	NM_001005329	exon1	c.C153A	p.I51I	TGTCTTGATGATA	.	510	300	794	1	.	0	0	0	0	0	5
OR52E8	390079	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	5878658	5878658	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR52E8-70	NM_001005168	exon1	c.G275C	p.W92S	TTGAACCAGAAGA	.	113	62	158	1	.	0	0	0	0	0	3
FAM160A2	84067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6245247	6245247	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM160A2-92	NM_032127	exon3	c.G370T	p.E124X	GTTCCTCGACCCC	.	73	36	101	0	.	0	0	0	0	0	5
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6661671	6661671	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DCHS1-73	NM_003737	exon2	c.G1174T	p.D392Y	CTGGGTCTGACAC	.	69	33	134	0	.	0	0	0	0	0	5
OR2D2	120776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6913108	6913108	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2D2-501	NM_003700	exon1	c.C624A	p.L208L	AGGTATGAGGAGA	.	68	37	92	0	.	0	0	0	0	0	5
OR2D3	120775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6942958	6942958	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2D3-68	NM_001004684	exon1	c.C726A	p.I242I	TGTTATCCAGATG	.	146	75	213	0	.	0	0	0	0	0	5
OR5P2	120065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7817640	7817640	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR5P2-496	NM_153444	exon1	c.C850A	p.L284M	AGATCAGGGGGTT	.	206	119	224	0	.	0	0	0	0	0	5
ADM	133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10328160	10328160	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADM-514	NM_001124	exon4	c.C530A	p.P177Q	CCCCCCCGAGTGG	.	118	70	96	0	.	0	0	0	0	0	5
INSC	387755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	15197588	15197588	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	INSC-94	NM_001031853	exon3	c.G499T	p.E167X	GTCAGCGAGTACA	.	146	59	187	0	.	0	0	0	0	0	5
SOX6	55553	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	16256218	16256218	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SOX6-93	NM_001145811	exon5	c.446-1G>T	.	AGGAATCTATTAA	.	11	6	12	0	.	0	0	0	0	0	3
USH1C	10083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	17552712	17552712	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USH1C-91	NM_005709	exon4	c.G376T	p.V126F	GCCCGACGCTGTC	.	128	73	199	0	.	0	0	0	0	0	5
NELL1	4745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	21596527	21596527	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NELL1-155	NM_006157	exon20	c.G2392T	p.V798F	GGAAGAGTCTGTT	.	58	26	105	0	.	0	0	0	0	0	5
SLC17A6	57084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	22363120	22363120	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC17A6-580	NM_020346	exon2	c.G133C	p.E45Q	CTGACGGAGGATG	.	57	33	102	0	.	0	0	0	0	0	5
SLC17A6	57084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	22399006	22399006	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC17A6-580	NM_020346	exon12	c.G1469T	p.G490V	ATGGTGGAGTTAT	.	88	51	149	0	.	0	0	0	0	0	5
DCDC5	100506627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	30915876	30915876	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DCDC5-23	NM_020869	exon16	c.G2133T	p.V711V	GGGCTGCACAGGG	.	56	26	85	0	.	0	0	0	0	0	5
WT1	7490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	32414240	32414240	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WT1-6891	NM_024424	exon8	c.G1311T	p.Q437H	TTTGAGCTGGTCT	.	142	80	185	0	.	0	0	0	0	0	5
CCDC73	493860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	32635948	32635948	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC73-91	NM_001008391	exon16	c.T1916A	p.I639K	GGAACAGGATTTT	.	38	21	52	0	.	0	0	0	0	0	5
QSER1	79832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	32956724	32956724	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	QSER1-95	NM_001076786	exon4	c.G3533T	p.R1178L	CTAGACGGCCAGG	.	68	35	131	0	.	0	0	0	0	0	5
KIAA1549L	25758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	33564462	33564462	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_012194	exon1	c.A462T	p.S154S	TTTGTCAGCAGCT	.	65	33	94	0	.	0	0	0	0	0	5
PAMR1	25891	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	35453941	35453941	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAMR1-70	NM_015430	exon12	c.T2177G	p.L726R	AAAGGCAGCACCT	.	45	21	63	1	.	0	0	0	0	0	4
PAMR1	25891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	35457622	35457622	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAMR1-70	NM_015430	exon10	c.C1213A	p.P405T	TGGTAGGGGCACT	.	255	142	308	0	.	0	0	0	0	0	5
RAG1	5896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	36596616	36596616	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAG1-230	NM_000448	exon2	c.G1762T	p.D588Y	CTTGATGATTACC	.	136	75	198	1	.	0	0	0	0	0	5
LRRC4C	57689	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	40137767	40137767	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC4C-521	NM_001258419	exon7	c.C76A	p.L26M	CAAGCAGGGGGTC	.	136	69	171	1	.	0	0	0	0	0	3
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46880716	46880716	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRP4-94	NM_002334	exon38	c.G5536T	p.D1846Y	CCGTGTCTGTCTT	.	87	27	107	0	.	0	0	0	0	0	5
OR4S1	256148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	48328090	48328090	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4S1-69	NM_001004725	exon1	c.G316C	p.G106R	TTCTTTGGTGGCA	.	84	52	116	0	.	0	0	0	0	0	5
FOLH1	2346	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	49195014	49195014	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FOLH1-579	NM_004476	exon10	c.C1120T	p.L374L	CTCCCAGAATGAC	.	80	38	117	0	.	0	0	0	0	0	4
OR4C46	119749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	51515827	51515827	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4C46-69	NM_001004703	exon1	c.G546T	p.L182F	CCCTTTGCTCAAC	.	103	54	124	0	.	0	0	0	0	0	5
OR4C11	219429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55371701	55371701	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4C11-69	NM_001004700	exon1	c.G149A	p.S50N	GTCCGGCTGGACT	.	34	23	59	0	.	0	0	0	0	0	5
OR4C6	219432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55432829	55432829	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4C6-70	NM_001004704	exon1	c.T187A	p.F63I	CTTACCTTCTTGT	.	113	70	141	0	.	0	0	0	0	0	5
OR5D16	390144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55606310	55606310	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR5D16-73	NM_001005496	exon1	c.C83T	p.P28L	AAATTCCCCTCTT	.	73	41	92	0	.	0	0	0	0	0	5
OR5W2	390148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55681212	55681212	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR5W2-70	NM_001001960	exon1	c.C847G	p.P283A	ACATGGGAACCAC	.	53	16	93	0	.	0	0	0	0	0	5
OR8H1	219469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56058500	56058500	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR8H1-71	NM_001005199	exon1	c.C39A	p.I13I	CGTAAGGATGAAG	.	29	16	41	0	.	0	0	0	0	0	5
OR8U1	219417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56143148	56143148	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR8U1-72	NM_001005204	exon1	c.C49A	p.L17I	GTGGGCCTCACAG	.	71	44	115	0	.	0	0	0	0	0	5
OR5R1	219479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56185247	56185247	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR5R1-70	NM_001004744	exon1	c.G462T	p.L154L	GGCAACCAGGAAG	.	94	56	137	0	.	0	0	0	0	0	5
OR1S2	219958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57970677	57970677	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR1S2-69	NM_001004459	exon1	c.G977C	p.X326S	GGGCATCAAAGGG	.	104	66	170	0	.	0	0	0	0	0	5
OR5B3	441608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58170454	58170454	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR5B3-68	NM_001005469	exon1	c.C429T	p.A143A	GCCTATGGCCAGA	.	97	57	152	0	.	0	0	0	0	0	5
OR5B2	390190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58190520	58190520	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR5B2-71	NM_001005566	exon1	c.C215A	p.S72Y	GCTGAGGAGTATC	.	129	80	189	0	.	0	0	0	0	0	5
OR5B12	390191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58207133	58207133	+	Silent	SNP	G	G	A	rs146093633	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR5B12-68	NM_001004733	exon1	c.C492T	p.L164L	GAAGGAGAGCCTG	.	139	83	161	0	G|1.000;A|0.000	0	0	0	0	0	5
OR5AN1	390195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	59132631	59132631	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR5AN1-69	NM_001004729	exon1	c.G700T	p.G234C	GCTAAAGGCAGGT	.	112	69	164	0	.	0	0	0	0	0	5
CCDC86	79080	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60617436	60617436	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC86-90	NM_024098	exon3	c.G912T	p.E304D	GGCTGAGAACCTG	.	95	45	146	1	.	0	0	0	0	0	4
MYRF	745	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	61533677	61533677	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001127392	exon3	c.G382T	p.A128S	CCCAAGGCTCCCT	.	61	38	58	1	.	0	0	0	0	0	3
SLC22A24	283238	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62886491	62886491	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001136506	exon4	c.C723A	p.Y241X	AACACTGTAGGAA	.	147	95	181	2	.	0	0	0	0	0	3
FLRT1	23769	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63885551	63885551	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FLRT1-90	NM_013280	exon2	c.G1812A	p.G604G	GTCAGGGACCAAG	.	171	79	178	1	.	0	0	0	0	0	4
NRXN2	9379	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	64375221	64375221	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NRXN2-232	NM_015080	exon23	c.C4586T	p.P1529L	TTGCGGGGTGACA	.	124	58	59	0	.	0	0	0	0	0	4
NRXN2	9379	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64402917	64402917	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NRXN2-232	NM_015080	exon18	c.C3411A	p.T1137T	GTATGTGGTCCCG	.	98	33	62	1	.	0	0	0	0	0	3
ZFPL1	7542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64855517	64855517	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFPL1-91	NM_006782	exon8	c.G864T	p.R288R	AGGCCGGGCCGCA	.	100	41	58	0	.	0	0	0	0	0	5
FAM89B	23625	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65340987	65340987	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM89B-90	NM_001098784	exon2	c.G455T	p.G152V	GATGCGGGCCTGT	.	225	25	159	1	.	0	0	0	0	0	3
TMEM151A	256472	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	66062127	66062127	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM151A-90	NM_153266	exon2	c.C410A	p.A137E	TGCTGGCGCTGAT	.	93	21	13	0	.	0	0	0	0	0	4
CCS	9973	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	66366693	66366693	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCS-90	NM_005125	exon3	c.G219T	p.A73A	GCAGGCGGTACTC	.	90	20	87	0	.	0	0	0	0	0	4
SPTBN2	6712	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66466921	66466921	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPTBN2-155	NM_006946	exon17	c.C3732G	p.I1244M	GGCGTGGATGTTG	.	197	79	147	2	.	0	0	0	0	0	4
RHOD	29984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66838961	66838961	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RHOD-659	NM_014578	exon5	c.G521A	p.R174Q	CGGCTCGGCTCCA	.	192	41	38	0	.	0	0	0	0	0	5
PITPNM1	9600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67264702	67264702	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PITPNM1-227	NM_001130848	exon14	c.G2146T	p.A716S	ACTCACCCTCCAG	.	240	100	210	0	.	0	0	0	0	0	5
FGF3	2248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	69625429	69625429	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FGF3-847	NM_005247	exon3	c.C364A	p.H122N	GCTCGTGGATCCG	.	204	104	211	1	.	0	0	0	0	0	4
SHANK2	22941	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	70331792	70331792	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SHANK2-94	NM_133266	exon10	c.G2842T	p.G948W	CTTGCCCATCTGC	.	161	76	211	1	.	0	0	0	0	0	3
KRTAP5-9	3846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71259735	71259735	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_005553	exon1	c.G32T	p.G11V	GCTGTGGCTCCAG	.	331	189	405	1	.	0	0	0	0	0	5
UCP2	7351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73687909	73687909	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UCP2-90	NM_003355	exon5	c.A491T	p.K164M	ATGGTCTTGTAGG	.	229	116	281	0	.	0	0	0	0	0	5
ARRB1	408	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	74978733	74978733	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARRB1-567	NM_004041	exon15	c.A1108T	p.T370S	CTGGCGTCTCGTT	.	13	8	19	0	.	0	0	0	0	0	3
UVRAG	7405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	75563004	75563004	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UVRAG-229	NM_003369	exon2	c.A194T	p.Y65F	ATACCTACTTTAC	.	64	33	92	0	.	0	0	0	0	0	5
TMEM135	65084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	87013485	87013485	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM135-514	NM_001168724	exon7	c.632+1G>T	.	TTCAATGTGAGCT	.	56	24	105	0	.	0	0	0	0	0	5
CTSC	1075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	88045699	88045699	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTSC-90	NM_001814	exon3	c.G342C	p.V114V	AGTGGTCACCTTG	.	61	32	62	0	.	0	0	0	0	0	5
GRM5	2915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	88242036	88242036	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRM5-949	NM_001143831	exon9	c.C3363T	p.I1121I	GACTTCGATGGCC	.	71	31	58	0	.	0	0	0	0	0	4
NOX4	50507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	89223635	89223635	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOX4-515	NM_001143836	exon2	c.G144C	p.Q48H	CAACATCTGGTGG	.	27	17	31	0	.	0	0	0	0	0	5
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92534391	92534391	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAT3-73	NM_001008781	exon9	c.G8212A	p.V2738I	CAGAATGTCTGGT	.	56	30	116	0	.	0	0	0	0	0	5
FOLR4	390243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94039684	94039684	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FOLR4-23	NM_001199206	exon2	c.C144T	p.I48I	GTGCATCCCCTGG	.	79	39	87	0	.	0	0	0	0	0	5
CNTN5	53942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	99942487	99942487	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTN5-366	NM_001243270	exon11	c.A1350T	p.Q450H	GAATCAATCAGAT	.	81	50	127	0	.	0	0	0	0	0	5
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108236144	108236144	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATM-3419	NM_000051	exon63	c.G9080T	p.S3027I	TGCTCAGTGTTGG	.	46	28	67	0	.	0	0	0	0	0	5
ARHGAP20	57569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	110482045	110482045	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGAP20-230	NM_020809	exon8	c.G696T	p.M232I	CCCTAGCATTGGT	.	48	23	99	0	.	0	0	0	0	0	5
TIMM8B	26521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111956172	111956172	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TIMM8B-90	NM_012459	exon2	c.G144T	p.M48I	TAACTCCATGAAG	.	42	24	48	0	.	0	0	0	0	0	5
BCO2	83875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	112087010	112087010	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BCO2-68	NM_031938	exon11	c.A1583C	p.E528A	ATGAAGAAGATGG	.	95	57	128	0	.	0	0	0	0	0	5
FXYD6-FXYD2	100533181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117691574	117691574	+	Missense_Mutation	SNP	C	C	T	rs139816783	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001204268	exon9	c.G410A	p.R137K	GCTCACCTGCGCT	.	34	18	43	0	C|1.000;T|0.000	0	0	0	0	0	5
HSPA8	3312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	122929389	122929389	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HSPA8-654	NM_006597	exon7	c.G1473T	p.V491V	CTTGTCCACAGCA	.	28	13	61	0	.	0	0	0	0	0	5
HSPA8	3312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	122929391	122929391	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HSPA8-654	NM_006597	exon7	c.G1471T	p.V491L	TGTCCACAGCAGA	.	28	13	61	0	.	0	0	0	0	0	5
OR10S1	219873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123847992	123847992	+	Missense_Mutation	SNP	C	C	A	rs199683540	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR10S1-70	NM_001004474	exon1	c.G407T	p.R136L	AGATAGCGGTCAT	.	101	57	119	0	.	0	0	0	0	0	5
VWA5A	4013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124015980	124015980	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VWA5A-92	NM_014622	exon17	c.G2191T	p.V731L	CTGGCCGTGATCT	.	65	44	125	0	.	0	0	0	0	0	5
OR8A1	390275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124440239	124440239	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR8A1-69	NM_001005194	exon1	c.C275T	p.S92F	ACTCCTCCGTCAT	.	84	46	122	0	.	0	0	0	0	0	5
NTM	50863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	132204993	132204993	+	Missense_Mutation	SNP	G	G	T	rs145004908	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NTM-95	NM_001144058	exon8	c.G1021T	p.V341F	GGCTGCGTCTGGC	.	43	27	57	0	G|1.000;A|0.000	0	0	0	0	0	5
CACNA2D4	93589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1994182	1994182	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNA2D4-23	NM_172364	exon10	c.C1129A	p.L377M	CTCTCAGGGCTTG	.	113	73	132	0	.	0	0	0	0	0	5
FGF6	2251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	4554551	4554551	+	Silent	SNP	G	G	C	rs202212518	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FGF6-659	NM_020996	exon1	c.C186G	p.R62R	CCCGGCGCGAGAC	.	86	52	69	0	G|0.999;A|0.000	0	0	0	0	0	5
GALNT8	26290	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	4829958	4829958	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GALNT8-230	NM_017417	exon1	c.G115T	p.G39C	TTTACGGGTGGTC	.	144	91	124	1	.	0	0	0	0	0	3
KCNA6	3742	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	4920365	4920365	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNA6-93	NM_002235	exon1	c.G1158A	p.G386G	CATCGGGGTCATC	.	267	176	275	1	.	0	0	0	0	0	4
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6078387	6078387	+	Missense_Mutation	SNP	G	G	T	rs192262780	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VWF-163	NM_000552	exon45	c.C7719A	p.S2573R	GCGACAGCTTGGG	.	155	102	173	0	G|0.999;T|0.000	0	0	0	0	0	5
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6125362	6125362	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VWF-163	NM_000552	exon31	c.C5348G	p.S1783X	ATTTCTGAAGTCA	.	286	74	227	0	.	0	0	0	0	0	5
LAG3	3902	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6883823	6883823	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LAG3-90	NM_002286	exon4	c.A574T	p.S192C	TCCTTCAGCCGCC	.	104	66	89	1	.	0	0	0	0	0	3
CD163L1	283316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7528358	7528358	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CD163L1-100	NM_174941	exon10	c.C2624T	p.P875L	ACAATGGGGCATA	.	135	95	126	0	.	0	0	0	0	0	5
C3AR1	719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8212382	8212382	+	Missense_Mutation	SNP	G	G	C	rs61736561	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C3AR1-227	NM_004054	exon2	c.C400G	p.R134G	CATTGCGATGATT	.	122	76	151	0	G|0.986;A|0.014	0	0	0	0	0	5
MFAP5	8076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8813475	8813475	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MFAP5-577	NM_003480	exon3	c.C78A	p.V26V	ACTATTGACCCCC	.	58	35	77	0	.	0	0	0	0	0	5
PZP	5858	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	9334698	9334698	+	Missense_Mutation	SNP	G	G	T	rs188078627	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PZP-157	NM_002864	exon14	c.C1562A	p.A521D	GATAAGGCAAAAC	.	118	75	104	1	G|0.999;A|0.001	0	0	0	0	0	3
PZP	5858	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	9353011	9353011	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PZP-157	NM_002864	exon7	c.C704A	p.P235Q	ATCTTTGGCACCT	.	60	36	69	1	.	0	0	0	0	0	4
STYK1	55359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10782211	10782211	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STYK1-1379	NM_018423	exon6	c.G514T	p.G172W	GTTTCCCCAGGTA	.	64	33	91	0	.	0	0	0	0	0	5
ATF7IP	55729	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	14578095	14578095	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATF7IP-252	NM_018179	exon2	c.G1246T	p.E416X	GTTATTGAAGATA	.	31	19	54	1	.	0	0	0	0	0	4
PDE3A	5139	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	20523173	20523173	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDE3A-94	NM_000921	exon1	c.G955T	p.E319X	CCGAGGGAACAGG	.	37	25	53	0	.	0	0	0	0	0	4
SLCO1C1	53919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	20886031	20886031	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLCO1C1-97	NM_017435	exon10	c.T1375A	p.Y459N	GTCTCCTACCAAG	.	49	30	51	0	.	0	0	0	0	0	5
SOX5	6660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	23893815	23893815	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SOX5-655	NM_006940	exon5	c.C727A	p.Q243K	GTTGCTGCTTGGC	.	50	33	74	0	.	0	0	0	0	0	5
MANSC4	100287284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	27915672	27915672	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001146221	exon3	c.A1022T	p.X341L	TTTTACTATGAAG	.	60	33	43	0	.	0	0	0	0	0	5
CCDC91	55297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	28605587	28605587	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC91-90	NM_018318	exon10	c.G1101C	p.Q367H	AAGTCAGGTTAGT	.	35	14	53	0	.	0	0	0	0	0	5
OVCH1	341350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	29598275	29598275	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OVCH1-210	NM_183378	exon23	c.G2817T	p.R939S	TGTCACCCTCACC	.	52	34	64	0	.	0	0	0	0	0	5
OVCH1	341350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	29607850	29607850	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OVCH1-210	NM_183378	exon21	c.G2454T	p.Q818H	ATTTGTCTGAAGT	.	60	36	83	0	.	0	0	0	0	0	5
OVCH1	341350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	29628092	29628092	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OVCH1-210	NM_183378	exon14	c.C1502A	p.S501X	AATATTGAAGTGA	.	103	70	151	0	.	0	0	0	0	0	5
TMTC1	83857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	29908758	29908758	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMTC1-90	NM_001193451	exon4	c.G615T	p.L205F	GAGCAGCAAGAAG	.	82	47	95	0	.	0	0	0	0	0	5
KIAA1551	55196	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	32134534	32134534	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_018169	exon4	c.A645T	p.P215P	ACCTCCAAAGCTA	.	95	68	101	1	.	0	0	0	0	0	3
KIAA1551	55196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	32136907	32136907	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_018169	exon4	c.A3018T	p.T1006T	AAGCACAGCTAAC	.	54	36	53	0	.	0	0	0	0	0	5
KIF21A	55605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	39695356	39695356	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF21A-97	NM_001173464	exon37	c.G4857T	p.V1619V	CTCTCCCACTGGC	.	171	126	179	0	.	0	0	0	0	0	5
CNTN1	1272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	41463834	41463834	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTN1-1149	NM_001843	exon24	c.C3054A	p.F1018L	GGAATTCTGAATG	.	72	49	85	0	.	0	0	0	0	0	5
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	43821221	43821221	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS20-795	NM_025003	exon27	c.G3997T	p.D1333Y	TTTCATCCTGGCA	.	94	56	102	0	.	0	0	0	0	0	5
PUS7L	83448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	44142372	44142372	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PUS7L-91	NM_001098614	exon3	c.G951T	p.A317A	ACCAATCGCTTCA	.	38	26	40	0	.	0	0	0	0	0	5
TWF1	5756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	44190794	44190794	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TWF1-797	NM_001242397	exon9	c.G888T	p.M296I	TACATCCATTTGT	.	58	41	91	0	.	0	0	0	0	0	5
ANO6	196527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	45742042	45742042	+	Missense_Mutation	SNP	G	G	C	rs145491348	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANO6-516	NM_001204803	exon6	c.G640C	p.D214H	ATGAATGATTTTT	.	119	29	137	0	G|1.000;T|0.000	0	0	0	0	0	5
NCKAP5L	57701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50195681	50195681	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NCKAP5L-68	NM_001037806	exon6	c.A301T	p.S101C	GGGCACTCAGCAT	.	168	117	176	0	.	0	0	0	0	0	5
FAM186A	121006	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	50746537	50746537	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM186A-68	NM_001145475	exon4	c.G4078C	p.G1360R	GGATCCCCAGTTC	.	454	374	271	2	.	0	0	0	0	0	3
KRT74	121391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52967215	52967215	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRT74-92	NM_175053	exon1	c.C347T	p.T116I	TTGACAGTGACCT	.	103	49	122	0	.	0	0	0	0	0	5
IGFBP6	3489	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53494882	53494882	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGFBP6-523	NM_002178	exon3	c.C538T	p.R180X	GTCTACCGAGGGG	.	125	84	135	0	.	0	0	0	0	0	5
ERBB3	2065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56487188	56487188	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ERBB3-1403	NM_001982	exon12	c.C1334T	p.S445F	TCCGATCCCTGAA	.	115	27	94	0	.	0	0	0	0	0	5
GNS	2799	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	65122777	65122777	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GNS-514	NM_002076	exon10	c.A1159T	p.N387Y	TCTTATTTAGGTC	.	128	72	123	0	.	0	0	0	0	0	4
LGR5	8549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	71972663	71972663	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LGR5-527	NM_003667	exon15	c.C1360G	p.H454D	GGAAATCATGCCT	.	99	61	116	0	.	0	0	0	0	0	5
LGR5	8549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	71978418	71978418	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LGR5-527	NM_003667	exon18	c.C2628G	p.I876M	CAGCATCACTTAT	.	82	46	78	0	.	0	0	0	0	0	5
TRHDE	29953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	72680494	72680494	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRHDE-93	NM_013381	exon2	c.T813G	p.H271Q	TACACATGCCAGA	.	107	67	128	0	.	0	0	0	0	0	5
SLC6A15	55117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85255765	85255765	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC6A15-93	NM_182767	exon12	c.C1839G	p.S613R	TGGATAGCTCAGA	.	42	18	97	0	.	0	0	0	0	0	5
TMPO	7112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	98940166	98940166	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMPO-93	NM_001032283	exon8	c.A1020G	p.V340V	AAGAGTAGAAAGG	.	105	61	118	0	.	0	0	0	0	0	5
SLC5A8	160728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	101603553	101603553	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC5A8-90	NM_145913	exon1	c.C74A	p.S25X	GCGGCCGAGATGA	.	94	68	57	0	.	0	0	0	0	0	4
ALDH1L2	160428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	105424132	105424132	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALDH1L2-91	NM_001034173	exon21	c.C2486A	p.P829H	ATAATAGGCCCAA	.	84	54	82	0	.	0	0	0	0	0	5
TRPV4	59341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	110231758	110231758	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPV4-94	NM_021625	exon9	c.G1561T	p.G521W	GGACCCCAGTGAA	.	241	182	251	0	.	0	0	0	0	0	5
ACAD10	80724	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112130583	112130583	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACAD10-92	NM_001136538	exon2	c.A70C	p.T24P	AAACACACCCAGC	.	124	77	96	2	.	0	0	0	0	0	4
HECTD4	283450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112701980	112701980	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001109662	exon17	c.C2224G	p.Q742E	GATTCTGAACTGC	.	103	21	109	0	.	0	0	0	0	0	5
RPH3A	22895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	113304642	113304642	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RPH3A-519	NM_001143854	exon7	c.G441A	p.R147R	GCAGAGGGAGGTG	.	133	88	123	0	.	0	0	0	0	0	5
TBX3	6926	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	115112157	115112157	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBX3-93	NM_016569	exon7	c.G1583C	p.G528A	GCGCCCCCCATGG	.	103	49	57	0	.	0	0	0	0	0	4
NOS1	4842	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	117768276	117768276	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOS1-154	NM_000620	exon2	c.G599T	p.G200V	TTCTCCCCTCTGC	.	91	49	95	1	.	0	0	0	0	0	3
SUDS3	64426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	118841234	118841234	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SUDS3-90	NM_022491	exon10	c.G715T	p.E239X	TCTCCTGAGCACT	.	50	34	41	0	.	0	0	0	0	0	5
SRRM4	84530	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	119594333	119594333	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SRRM4-2	NM_194286	exon13	c.C1566A	p.P522P	TCGGCCCAGCCCC	.	205	119	176	1	.	0	0	0	0	0	3
CCDC60	160777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	119926594	119926594	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC60-93	NM_178499	exon5	c.C480A	p.L160L	TGCTCTCCACTGG	.	300	218	236	0	.	0	0	0	0	0	5
WDR66	144406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122413555	122413555	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDR66-92	NM_144668	exon19	c.C2970T	p.V990V	TTTTGTCATGAGA	.	160	32	112	0	.	0	0	0	0	0	5
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124335466	124335466	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH10-95	NM_207437	exon34	c.G5780T	p.R1927L	ACTCCCGCATGGG	.	98	74	79	0	.	0	0	0	0	0	5
TMEM132B	114795	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	126135311	126135311	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM132B-185	NM_052907	exon7	c.C1711A	p.R571S	ACAGTGCGTGTCC	.	257	182	241	2	.	0	0	0	0	0	3
RNF17	56163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25363494	25363494	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RNF17-228	NM_001184993	exon8	c.G792T	p.R264R	TATCCGGACTTTG	.	61	21	120	0	.	0	0	0	0	0	5
CDK8	1024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	26923272	26923272	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDK8-1023	NM_001260	exon3	c.G268T	p.D90Y	CATGCTGATAGGA	.	93	33	127	0	.	0	0	0	0	0	5
MTUS2	23281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	29599201	29599201	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MTUS2-218	NM_001033602	exon1	c.G396T	p.Q132H	CCTGCAGACCACG	.	86	34	153	0	.	0	0	0	0	0	5
MTUS2	23281	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	29599429	29599429	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MTUS2-218	NM_001033602	exon1	c.A624G	p.L208L	GCCTCTATCCCTC	.	59	26	96	1	.	0	0	0	0	0	3
MTUS2	23281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	29600623	29600623	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MTUS2-218	NM_001033602	exon1	c.G1818T	p.G606G	CAGTGGGATCCCC	.	74	23	122	0	.	0	0	0	0	0	5
MTUS2	23281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	30054476	30054476	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MTUS2-218	NM_001033602	exon8	c.G3404C	p.S1135T	TGCTGAGCATCCG	.	112	40	180	0	.	0	0	0	0	0	5
DCLK1	9201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36699966	36699966	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DCLK1-826	NM_004734	exon2	c.G309T	p.Q103H	CACTCCCTGGGGC	.	111	31	155	0	.	0	0	0	0	0	5
SMAD9	4093	broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	37427574	37427574	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMAD9-414	NM_001127217	exon6	c.C1242T	p.I414I	CATCCGGATAGTA	.	45	12	69	0	.	0	0	0	0	0	3
EXOSC8	11340	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	37582275	37582275	+	Missense_Mutation	SNP	G	G	T	rs200992929	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EXOSC8-91	NM_181503	exon9	c.G569T	p.R190I	ATATTAGAACTCA	.	45	6	107	0	G|1.000;A|0.000	0	0	0	0	0	3
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39264618	39264618	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FREM2-100	NM_207361	exon1	c.G3137T	p.G1046V	GAATTGGTGGCAA	.	53	21	96	0	.	0	0	0	0	0	5
NAA16	79612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	41932560	41932560	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NAA16-90	NM_001110798	exon11	c.G1208T	p.S403I	TTGCTAGTACTCC	.	50	13	100	0	.	0	0	0	0	0	5
ENOX1	55068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	43896519	43896519	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ENOX1-92	NM_001242863	exon12	c.1261+1G>T	.	GCATTACCTGATT	.	73	28	188	0	.	0	0	0	0	0	4
TSC22D1	8848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	45147767	45147767	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TSC22D1-90	NM_183422	exon1	c.C2444T	p.S815L	TGCTGTGAAACAA	.	86	28	171	0	.	0	0	0	0	0	5
LRCH1	23143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	47297444	47297444	+	Missense_Mutation	SNP	G	G	T	rs188820612	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRCH1-91	NM_001164211	exon17	c.G1848T	p.E616D	GAAAGAGCTGGTG	.	30	11	62	0	G|0.999;A|0.000	0	0	0	0	0	5
HTR2A	3356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	47469863	47469863	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HTR2A-519	NM_000621	exon2	c.G179T	p.C60F	GAGAGGCACCCTT	.	129	36	190	0	.	0	0	0	0	0	5
ITM2B	9445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	48830474	48830474	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITM2B-90	NM_021999	exon3	c.G408T	p.E136D	CCCAGAGTTTGCA	.	53	12	82	0	.	0	0	0	0	0	4
ARL11	115761	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	50205070	50205070	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARL11-90	NM_138450	exon2	c.C487G	p.P163A	GGGCTGCCCGAGG	.	65	26	89	1	.	0	0	0	0	0	4
PCDH8	5100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	53422274	53422274	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH8-153	NM_002590	exon1	c.C298A	p.P100T	ACTGCGGGGCCTG	.	68	21	20	0	.	0	0	0	0	0	5
OLFM4	10562	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	53624443	53624443	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OLFM4-69	NM_006418	exon5	c.C1070A	p.T357K	CCAACACGATTGC	.	203	54	291	1	.	0	0	0	0	0	3
PCDH17	27253	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	58208469	58208469	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH17-97	NM_001040429	exon1	c.G1789T	p.V597L	CTGCAGGTGCCGC	.	107	32	122	1	.	0	0	0	0	0	3
PCDH17	27253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	58208760	58208760	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH17-97	NM_001040429	exon1	c.C2080G	p.R694G	GTACCACGGGTGA	.	164	41	254	0	.	0	0	0	0	0	5
PCDH17	27253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	58240856	58240856	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH17-97	NM_001040429	exon3	c.G2686T	p.D896Y	GACAGTGATCAGG	.	119	42	174	0	.	0	0	0	0	0	5
PCDH9	5101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	67205483	67205483	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH9-96	NM_203487	exon4	c.G3199T	p.G1067C	CTAGACCACTGTC	.	64	17	129	0	.	0	0	0	0	0	5
TBC1D4	9882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	75915278	75915278	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBC1D4-95	NM_014832	exon7	c.A1594G	p.I532V	CCCCGATGTGCAC	.	106	28	133	0	.	0	0	0	0	0	5
IRG1	730249	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	13	77531719	77531719	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001258406	exon4	c.G1033T	p.V345F	ATCACTGTCCCCT	.	73	17	78	0	.	0	0	0	0	0	3
MYCBP2	23077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	77870754	77870754	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYCBP2-236	NM_015057	exon2	c.A358G	p.K120E	TCACTTTTGATTT	.	13	4	22	0	.	0	0	0	0	0	4
EDNRB	1910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	78492683	78492683	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EDNRB-522	NM_001201397	exon2	c.G296C	p.G99A	GCGCGTCCGCACA	.	79	24	93	0	.	0	0	0	0	0	5
RNF219	79596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	79191112	79191112	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RNF219-135	NM_024546	exon6	c.G784T	p.E262X	TCTCTTCACTTGA	.	73	18	107	0	.	0	0	0	0	0	5
SLITRK1	114798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	84455469	84455469	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLITRK1-94	NM_052910	exon1	c.C174A	p.S58S	AAACTGGGAAGTC	.	37	9	70	0	.	0	0	0	0	0	4
SLITRK6	84189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	86368998	86368998	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLITRK6-137	NM_032229	exon2	c.C1646A	p.P549H	TGCCCGGGGGAAG	.	84	14	132	0	.	0	0	0	0	0	4
GPC5	2262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	92051320	92051320	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPC5-519	NM_004466	exon1	c.C20A	p.P7H	CCTGGCCCGTGGG	.	115	26	100	0	.	0	0	0	0	0	4
GPC5	2262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	92345810	92345810	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPC5-519	NM_004466	exon3	c.G695T	p.G232V	ATCTGGGCATTGA	.	70	21	125	0	.	0	0	0	0	0	5
DCT	1638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	95121092	95121092	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DCT-94	NM_001129889	exon2	c.G503T	p.G168V	TTGGGCCCAAGCA	.	69	17	101	0	.	0	0	0	0	0	5
HS6ST3	266722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	96743551	96743551	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HS6ST3-92	NM_153456	exon1	c.C435G	p.R145R	AGGGCGCGACGTG	.	122	38	183	0	.	0	0	0	0	0	5
GPR183	1880	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99948095	99948095	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR183-522	NM_004951	exon2	c.C305G	p.A102G	CACAAGGCATCTC	.	129	37	218	2	.	0	0	0	0	0	3
NALCN	259232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	101736110	101736110	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NALCN-167	NM_052867	exon31	c.A3535C	p.K1179Q	GGCTCTTCAGGTC	.	30	7	73	0	.	0	0	0	0	0	4
NALCN	259232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	101755576	101755576	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NALCN-167	NM_052867	exon26	c.C3004A	p.Q1002K	TCATCTGGGGCAC	.	51	16	65	0	.	0	0	0	0	0	5
NALCN	259232	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	101757250	101757250	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NALCN-167	NM_052867	exon23	c.A2631T	p.Q877H	CTAAAGTTGATGG	.	87	31	95	1	.	0	0	0	0	0	4
NALCN	259232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	102029346	102029346	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NALCN-167	NM_052867	exon5	c.G437T	p.R146L	AGTGGCCGTGGAA	.	91	19	103	0	.	0	0	0	0	0	5
CCDC168	643677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103388356	103388356	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001146197	exon4	c.C14691A	p.P4897P	CCTTTTGGGGAGT	.	68	20	83	0	.	0	0	0	0	0	5
CCDC168	643677	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	103388670	103388670	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001146197	exon4	c.C14377A	p.H4793N	GACTGTGCTCAGT	.	145	39	219	1	.	0	0	0	0	0	3
CCDC168	643677	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	13	103391132	103391132	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001146197	exon4	c.C11915A	p.P3972H	GCAAAAGGTTTGC	.	24	4	65	0	.	0	0	0	0	0	3
CCDC168	643677	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	13	103398334	103398334	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001146197	exon4	c.C4713T	p.G1571G	TATTAAGCCATCG	.	87	12	118	0	.	0	0	0	0	0	3
COL4A1	1282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	110850953	110850953	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL4A1-654	NM_001845	exon21	c.T1146C	p.G382G	AGGGGCACCAGCC	.	38	12	67	0	.	0	0	0	0	0	5
ATP11A	23250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	113508734	113508734	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP11A-138	NM_032189	exon19	c.G2133C	p.L711L	GCTGCTGGAGCTG	.	100	23	115	0	.	0	0	0	0	0	5
PCID2	55795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	113839829	113839829	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCID2-90	NM_001258212	exon8	c.G675T	p.L225L	GTTCACCAGAAAC	.	42	9	55	0	.	0	0	0	0	0	4
GRK1	6011	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	114322346	114322346	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRK1-614	NM_002929	exon1	c.G645T	p.L215L	CAAGCTGTATGCC	.	130	36	164	1	.	0	0	0	0	0	4
OR4N2	390429	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20296018	20296018	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4N2-71	NM_001004723	exon1	c.C411A	p.N137K	CATGAACCCTAGA	.	147	68	195	1	.	0	0	0	0	0	4
OR11G2	390439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20665906	20665906	+	Missense_Mutation	SNP	C	C	A	rs77997988	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR11G2-70	NM_001005503	exon1	c.C412A	p.Q138K	TTCCTCCAGTTCT	.	67	38	107	0	.	0	0	0	0	0	5
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20845643	20845643	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TEP1-95	NM_007110	exon41	c.G5884T	p.G1962W	GAGCCCCCTGGGA	.	54	30	81	0	.	0	0	0	0	0	5
MYH6	4624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23876252	23876252	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYH6-94	NM_002471	exon3	c.G181C	p.A61P	TTTCAGCAATGAC	.	87	59	92	0	.	0	0	0	0	0	5
RNF31	55072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24617561	24617561	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RNF31-90	NM_017999	exon3	c.A434C	p.Q145P	AGCACCAGGTTGC	.	115	57	195	0	.	0	0	0	0	0	5
DTD2	112487	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	31926518	31926518	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_080664	exon1	c.G82A	p.D28N	CCCCATCGGCTGG	.	304	75	75	1	.	0	0	0	0	0	3
EAPP	55837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	35005309	35005309	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EAPP-91	NM_018453	exon2	c.C247T	p.L83L	TTCCCAGAGAGGA	.	25	17	36	0	.	0	0	0	0	0	5
FAM177A1	283635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	35548204	35548204	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM177A1-226	NM_173607	exon4	c.G478C	p.D160H	GCCATTGATGAAT	.	60	16	96	0	.	0	0	0	0	0	5
LRFN5	145581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	42356483	42356483	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRFN5-97	NM_152447	exon3	c.G655C	p.A219P	CAGCGAGCTCAGG	.	102	57	121	0	.	0	0	0	0	0	5
LRFN5	145581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	42356830	42356830	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRFN5-97	NM_152447	exon3	c.T1002A	p.S334S	AAGATCTCTGGTG	.	78	37	130	0	.	0	0	0	0	0	5
FSCB	84075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	44974595	44974595	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FSCB-587	NM_032135	exon1	c.G1596T	p.E532D	AGGAGCCTCTATA	.	35	22	31	0	.	0	0	0	0	0	5
MIS18BP1	55320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45693590	45693590	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MIS18BP1-90	NM_018353	exon11	c.G2200A	p.E734K	TTTGTTCCTTTTC	.	41	24	47	0	.	0	0	0	0	0	5
MIS18BP1	55320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45711445	45711445	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MIS18BP1-90	NM_018353	exon4	c.G935C	p.G312A	GAAGTCCCTTCTG	.	57	28	64	0	.	0	0	0	0	0	5
MDGA2	161357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	47342647	47342647	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MDGA2-95	NM_001113498	exon14	c.G2741C	p.G914A	TGTTGTCCATACA	.	33	16	71	0	.	0	0	0	0	0	5
ABHD12B	145447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	51355545	51355545	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABHD12B-153	NM_001206673	exon9	c.G704A	p.C235Y	AAGGATGCCCAGT	.	31	18	55	0	.	0	0	0	0	0	5
NID2	22795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	52485862	52485862	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NID2-158	NM_007361	exon14	c.G2945T	p.W982L	ACGCACCAGCAGA	.	177	111	180	1	.	0	0	0	0	0	5
NID2	22795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	52486816	52486816	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NID2-158	NM_007361	exon13	c.C2755A	p.Q919K	CGGGTTGACAACG	.	124	68	173	0	.	0	0	0	0	0	5
ARID4A	5926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	58831980	58831980	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARID4A-231	NM_002892	exon20	c.G3173C	p.C1058S	GTACCTGTAGTAT	.	81	52	119	0	.	0	0	0	0	0	5
C14orf39	317761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	60933637	60933637	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C14orf39-94	NM_174978	exon10	c.C893A	p.A298E	ATACCTGCAACTC	.	17	10	17	0	.	0	0	0	0	0	4
SYNE2	23224	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64691758	64691758	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SYNE2-164	NM_182914	exon115	c.G20511T	p.E6837D	GACAGAGAGCAGG	.	463	138	162	2	.	0	0	0	0	0	4
AKAP5	9495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64935226	64935226	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AKAP5-226	NM_004857	exon2	c.G114C	p.K38N	CTTCAAGAGAAGA	.	276	41	188	0	.	0	0	0	0	0	5
PLEKHG3	26030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65209938	65209938	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLEKHG3-91	NM_015549	exon15	c.C3009G	p.S1003S	TGCCTCCCGCGAT	.	111	24	13	0	.	0	0	0	0	0	5
VTI1B	10490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	68120200	68120200	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VTI1B-90	NM_006370	exon5	c.G556T	p.E186X	AGTTTTCACTTGT	.	50	8	65	0	.	0	0	0	0	0	4
SLC8A3	6547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	70634023	70634023	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC8A3-225	NM_183002	exon2	c.G1117T	p.A373S	CTGCTGCATGTTT	.	131	87	169	0	.	0	0	0	0	0	5
ADAM21	8747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	70926120	70926120	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAM21-92	NM_003813	exon2	c.T1904A	p.L635H	TCTGCCTTCCTGA	.	397	180	435	1	.	0	0	0	0	0	5
ADAM20	8748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	70990144	70990144	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAM20-226	NM_003814	exon2	c.G1481T	p.G494V	GCAGCCCCAGGAT	.	120	43	97	0	.	0	0	0	0	0	5
SIPA1L1	26037	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	72128143	72128143	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SIPA1L1-156	NM_015556	exon7	c.C2214A	p.I738I	CGTCATCGTCAGG	.	52	35	76	1	.	0	0	0	0	0	4
PAPLN	89932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	73711367	73711367	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAPLN-70	NM_173462	exon3	c.C70A	p.R24R	GTGAGGCGGCAGA	.	140	85	122	0	.	0	0	0	0	0	5
NUMB	8650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	73750814	73750814	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NUMB-1062	NM_001005744	exon10	c.G924A	p.K308K	ATCAGTCTTCCTC	.	187	41	195	0	.	0	0	0	0	0	5
LTBP2	4053	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	75018960	75018960	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LTBP2-92	NM_000428	exon6	c.C1329T	p.S443S	GGGGCGGGACCCC	.	168	122	134	2	.	0	0	0	0	0	3
TTLL5	23093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	76149969	76149969	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTLL5-92	NM_015072	exon5	c.C341T	p.S114F	CCCTCTCTGAAGC	.	122	28	121	0	.	0	0	0	0	0	5
NRXN3	9369	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	79175583	79175583	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NRXN3-587	NM_004796	exon4	c.C126T	p.I42I	TGACATCCGTCTG	.	62	36	89	1	.	0	0	0	0	0	3
PTPN21	11099	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	88971713	88971713	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPN21-230	NM_007039	exon5	c.G451T	p.D151Y	CAAAATCCGCTAT	.	123	8	153	0	.	0	0	0	0	0	3
SERPINA4	5267	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95030148	95030148	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SERPINA4-230	NM_006215	exon2	c.C329A	p.T110N	ACCTCACCGAGCT	.	77	35	72	1	.	0	0	0	0	0	4
SERPINA4	5267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95030149	95030149	+	Silent	SNP	C	C	G	rs141308668	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SERPINA4-230	NM_006215	exon2	c.C330G	p.T110T	CCTCACCGAGCTG	.	78	36	72	0	C|1.000;T|0.000	0	0	0	0	0	5
SERPINA5	5104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	95054239	95054239	+	Silent	SNP	G	G	A	rs146244413	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SERPINA5-652	NM_000624	exon3	c.G540A	p.T180T	GCAAACGAAGGGC	.	353	233	403	1	G|0.999;A|0.001	0	0	0	0	0	4
SYNE3	161176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95916424	95916424	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_152592	exon7	c.G1293A	p.A431A	CAGCCTCGCGCTC	.	179	36	120	0	.	0	0	0	0	0	5
ATG2B	55102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	96813577	96813577	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATG2B-93	NM_018036	exon2	c.G264T	p.Q88H	ATTATCCTGCAGT	.	71	46	97	0	.	0	0	0	0	0	5
PAPOLA	10914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	97029218	97029218	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAPOLA-68	NM_032632	exon21	c.G2130C	p.L710L	TTCTCTGTTGGCC	.	25	13	38	0	.	0	0	0	0	0	5
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	101351118	101351118	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RTL1-46	NM_001134888	exon1	c.A8G	p.E3G	GAGGGTTCTATCA	.	100	66	99	0	.	0	0	0	0	0	5
DIO3	1735	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102028262	102028262	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DIO3-494	.	.	.	.	TCTGCCCGACGGC	.	114	39	76	0	.	0	0	0	0	0	4
MARK3	4140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	103931918	103931918	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MARK3-360	NM_001128919	exon8	c.G565A	p.D189N	GATGCCGATATGA	.	55	13	56	0	.	0	0	0	0	0	4
TDRD9	122402	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	104470600	104470600	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TDRD9-70	NM_153046	exon14	c.G1509T	p.G503G	TAGAGGGTACTGT	.	135	107	111	2	.	0	0	0	0	0	3
ASPG	374569	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	104561948	104561948	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001080464	exon4	c.C384T	p.F128F	GTCCTTCATGCTG	.	145	28	140	1	.	0	0	0	0	0	3
KIF26A	26153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104641745	104641745	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF26A-24	NM_015656	exon12	c.G2620A	p.G874R	GCCCGAGGGGGCC	.	120	26	22	0	.	0	0	0	0	0	5
KIF26A	26153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	104641876	104641876	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF26A-24	NM_015656	exon12	c.C2751T	p.A917A	CAAGGCCATTGTC	.	62	11	32	0	.	0	0	0	0	0	4
OR4M2	390538	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	22368578	22368578	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4M2-69	NM_001004719	exon1	c.G3T	p.M1I	AGAAATGGAAACT	.	81	11	99	0	.	0	0	0	0	0	3
OR4M2	390538	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	22368613	22368613	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4M2-69	NM_001004719	exon1	c.T38C	p.V13A	AATTTGTTCTCAC	.	133	34	176	0	.	0	0	0	0	0	4
OR4N4	283694	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	22382866	22382866	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4N4-73	NM_001005241	exon1	c.T394G	p.C132G	CTGCACTGTTCAA	.	271	78	290	0	.	0	0	0	0	0	4
TUBGCP5	114791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	22855078	22855078	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TUBGCP5-91	NM_052903	exon13	c.G1539T	p.T513T	TTACACGTTATAT	.	273	32	177	0	.	0	0	0	0	0	5
MAGEL2	54551	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	23889842	23889842	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_019066	exon1	c.C3048A	p.P1016P	AGACAAGGGCTGT	.	175	30	171	1	.	0	0	0	0	0	4
GABRB3	2562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	26866612	26866612	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GABRB3-518	NM_021912	exon4	c.C310G	p.L104V	GGTTGAGAGGGAT	.	74	10	85	0	.	0	0	0	0	0	4
GABRA5	2558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	27182468	27182468	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GABRA5-91	NM_001165037	exon8	c.C717A	p.T239T	CAGCACCAGCACA	.	154	86	118	0	.	0	0	0	0	0	5
GABRG3	2567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	27572125	27572125	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001270873	exon4	c.C440A	p.P147H	CCACACCCAATCA	.	106	46	116	0	.	0	0	0	0	0	5
APBA2	321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	29346205	29346205	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	APBA2-90	NM_005503	exon3	c.G118T	p.G40C	TTGGAGGGCTATG	.	289	74	234	0	.	0	0	0	0	0	5
APBA2	321	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	29400511	29400511	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	APBA2-90	NM_005503	exon12	c.C1956T	p.V652V	CATTGTCAGCTGT	.	123	16	120	1	.	0	0	0	0	0	3
TRPM1	4308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	31295069	31295069	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPM1-94	NM_001252020	exon27	c.G3885T	p.T1295T	AAGATACGTTGCC	.	68	36	78	0	.	0	0	0	0	0	5
FMN1	342184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33300216	33300216	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FMN1-23	NM_001103184	exon3	c.A1553T	p.Q518L	CATACCTGCAGGT	.	65	26	43	0	.	0	0	0	0	0	5
RYR3	6263	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	33944994	33944994	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RYR3-520	NM_001243996	exon32	c.C4218A	p.N1406K	GAGCAACGTGGAC	.	316	66	330	2	.	0	0	0	0	0	3
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34111987	34111987	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RYR3-520	NM_001036	exon77	c.C10737A	p.S3579S	CACCTCCTATTCC	.	103	26	90	0	.	0	0	0	0	0	5
GPR176	11245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40094026	40094026	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR176-519	NM_007223	exon3	c.G855T	p.L285L	GACGACCAGGGTG	.	149	40	159	0	.	0	0	0	0	0	5
INO80	54617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41272438	41272438	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	INO80-72	NM_017553	exon36	c.C4654T	p.P1552S	CAGAGGGGTTGGT	.	70	16	67	0	.	0	0	0	0	0	5
MAPKBP1	23005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42116197	42116197	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAPKBP1-589	NM_001128608	exon30	c.C4169T	p.P1390L	CACCCCCTGAGAA	.	41	8	41	0	.	0	0	0	0	0	4
SPTBN5	51332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42158294	42158294	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPTBN5-91	NM_016642	exon38	c.G6659T	p.R2220L	AAGTTCCGCCTGT	.	68	11	56	0	.	0	0	0	0	0	4
PLA2G4D	283748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42364533	42364533	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLA2G4D-136	NM_178034	exon14	c.C1375T	p.L459L	GGGGCAGAGGGTT	.	82	19	69	0	.	0	0	0	0	0	5
TMEM87A	25963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42503948	42503948	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM87A-91	NM_015497	exon21	c.1627-1G>C	.	TCGTTCCTAGGGA	.	45	10	50	0	.	0	0	0	0	0	4
TTBK2	146057	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43120176	43120176	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTBK2-338	NM_173500	exon6	c.G487T	p.D163Y	CAAAATCAAGCAT	.	235	96	230	1	.	0	0	0	0	0	4
DUOX2	50506	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	45405235	45405235	+	Missense_Mutation	SNP	C	C	A	rs200434528	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DUOX2-95	NM_014080	exon3	c.G110T	p.R37L	TCATAGCGCTGCA	.	168	62	138	2	C|0.999;A|0.001	0	0	0	0	0	3
DUOXA1	90527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45409733	45409733	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DUOXA1-227	NM_144565	exon11	c.C1432T	p.R478C	TGTGGCGGGAGGT	.	110	52	140	0	.	0	0	0	0	0	5
SLC24A5	283652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48431348	48431348	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC24A5-90	NM_205850	exon7	c.C1054A	p.L352M	TATATCCTGGTTT	.	46	20	70	0	.	0	0	0	0	0	5
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	48802361	48802361	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBN1-92	NM_000138	exon14	c.G1594T	p.D532Y	ACTCATCAATGTC	.	88	16	143	0	.	0	0	0	0	0	4
SHC4	399694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49135625	49135625	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SHC4-95	NM_203349	exon10	c.G1464T	p.G488G	TGGGCTCCCCAGT	.	158	32	152	0	.	0	0	0	0	0	5
DTWD1	56986	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	49926822	49926822	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DTWD1-226	NM_001144955	exon4	c.498delC	p.G166fs	TAGAGGCAAAAAT	.	96	21	162	0	.	0	0	0	0	0	3
ATP8B4	79895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	50212566	50212566	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP8B4-140	NM_024837	exon18	c.C1800T	p.Y600Y	GTCTCTGTATGCG	.	116	32	101	0	.	0	0	0	0	0	5
TRPM7	54822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	50897135	50897135	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPM7-392	NM_017672	exon21	c.G2916T	p.W972C	CACATACCAAAAT	.	134	47	182	0	.	0	0	0	0	0	5
TRPM7	54822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	50941083	50941083	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPM7-392	NM_017672	exon5	c.123-1G>T	.	AAACACCTAAAAG	.	19	5	23	0	.	0	0	0	0	0	4
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	54305438	54305438	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UNC13C-51	NM_001080534	exon1	c.A338C	p.N113T	GTGATAATGAGGA	.	85	31	124	0	.	0	0	0	0	0	5
C2CD4A	145741	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	62359893	62359893	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C2CD4A-68	NM_207322	exon2	c.C81A	p.R27R	GGCCCGCGGAGCC	.	77	38	34	0	.	0	0	0	0	0	4
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63031744	63031744	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TLN2-573	NM_015059	exon28	c.G3885T	p.Q1295H	AGCTCAGGTGGGT	.	155	74	128	0	.	0	0	0	0	0	5
VWA9	81556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65884016	65884016	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001207058	exon9	c.A986T	p.N329I	ATGAGGTTTGATT	.	107	44	96	0	.	0	0	0	0	0	5
NOX5	79400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69347714	69347714	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOX5-136	NM_024505	exon15	c.G2040T	p.L680L	TGCACTGGGCAAG	.	161	32	199	0	.	0	0	0	0	0	5
PKM	5315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	72502105	72502105	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001206796	exon6	c.G696T	p.W232C	GTCCAGCCACAGG	.	124	55	154	0	.	0	0	0	0	0	5
TBC1D2B	23102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	78290603	78290603	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBC1D2B-136	NM_015079	exon13	c.G2739A	p.W913X	TCAGCTCCAGCCG	.	210	41	233	0	.	0	0	0	0	0	5
ANKRD34C	390616	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	79585642	79585642	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001146341	exon2	c.A16T	p.T6S	GATGACACTGAAT	.	191	80	190	1	.	0	0	0	0	0	3
KIAA1024	23251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79749156	79749156	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1024-183	NM_015206	exon2	c.G667C	p.E223Q	GAAAACGAGTCCA	.	158	41	148	0	.	0	0	0	0	0	5
ARNT2	9915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	80767372	80767372	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARNT2-175	NM_014862	exon5	c.G430C	p.E144Q	ATCCTTGAAGCAG	.	47	20	67	0	.	0	0	0	0	0	5
ARNT2	9915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	80800576	80800576	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARNT2-175	NM_014862	exon6	c.G702A	p.R234R	CTCGCGGCGGTCT	.	128	65	137	0	.	0	0	0	0	0	5
ARNT2	9915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	80869292	80869292	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARNT2-175	NM_014862	exon15	c.C1599A	p.S533S	ACACTCCGGGAAG	.	128	22	121	0	.	0	0	0	0	0	4
KIAA1199	57214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81218065	81218065	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1199-93	NM_018689	exon18	c.C2389A	p.R797S	TGGCTGCGCGGCG	.	131	61	100	0	.	0	0	0	0	0	5
KIAA1199	57214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81224296	81224296	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1199-93	NM_018689	exon21	c.C2709A	p.T903T	GCACACCAGCGCC	.	55	20	86	0	.	0	0	0	0	0	5
FAM154B	283726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	82574573	82574573	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM154B-70	NM_001008226	exon3	c.C367T	p.P123S	TTTGTTCCTCAGG	.	140	15	134	0	.	0	0	0	0	0	4
AKAP13	11214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86124843	86124843	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AKAP13-258	NM_007200	exon7	c.G3544A	p.E1182K	GACGATGAAGCAC	.	139	22	152	0	.	0	0	0	0	0	5
KLHL25	64410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86312878	86312878	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLHL25-92	NM_022480	exon2	c.G164T	p.R55L	AAGGCACGGTCGC	.	213	50	210	0	.	0	0	0	0	0	5
AGBL1	123624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	86697774	86697774	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_152336	exon3	c.C238A	p.R80S	GCTCTGCGTGTGT	.	94	15	87	0	.	0	0	0	0	0	4
AGBL1	123624	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	86790916	86790916	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_152336	exon6	c.A403T	p.R135X	GGCCGCAGAGCAG	.	176	48	183	1	.	0	0	0	0	0	3
AGBL1	123624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86800211	86800211	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_152336	exon7	c.G725T	p.G242V	TCCCCGGGTGCAT	.	117	29	102	0	.	0	0	0	0	0	5
NTRK3	4916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	88423642	88423642	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NTRK3-3538	NM_001012338	exon19	c.G2193T	p.M731I	GGGGAGCATGGTG	.	90	49	101	0	.	0	0	0	0	0	5
CERS3	204219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	100996194	100996194	+	Nonsense_Mutation	SNP	G	G	T	rs139946861	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_178842	exon12	c.C903A	p.Y301X	GAAGATGTATGAA	.	62	12	64	0	G|0.997;A|0.003	0	0	0	0	0	4
LRRK1	79705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	101565124	101565124	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRK1-602	NM_024652	exon16	c.G2184A	p.L728L	GGCGCTGGGGGAG	.	101	46	107	0	.	0	0	0	0	0	5
PCSK6	5046	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	101922386	101922386	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCSK6-46	.	.	.	.	TGCGTCCACCAAA	.	90	29	106	0	.	0	0	0	0	0	4
PDIA2	64714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	335179	335179	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDIA2-91	NM_006849	exon5	c.G774C	p.L258L	GCGCCTGGTCACG	.	129	23	99	0	.	0	0	0	0	0	5
PDIA2	64714	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	335541	335541	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDIA2-91	NM_006849	exon7	c.T957A	p.N319K	CGACAATGAGCAC	.	172	33	164	0	.	0	0	0	0	0	4
C16orf13	84326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	684529	684529	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C16orf13-22	NM_001040160	exon5	c.C615G	p.P205P	GGCCTAGGGAGGC	.	127	35	136	0	.	0	0	0	0	0	5
TELO2	9894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1551665	1551665	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TELO2-90	NM_016111	exon11	c.A1363G	p.T455A	TAAAGCACGTCCC	.	68	29	48	0	.	0	0	0	0	0	5
CRAMP1L	57585	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	16	1706050	1706050	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_020825	exon9	c.G1292T	p.R431L	GCGGCCGGTGCAA	.	146	66	54	0	.	0	0	0	0	0	3
SLC9A3R2	9351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2079600	2079600	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC9A3R2-23	NM_004785	exon2	c.G231T	p.K77N	GATCAAGGCTGTG	.	151	25	124	0	.	0	0	0	0	0	5
E4F1	1877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2284352	2284352	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	E4F1-187	NM_004424	exon10	c.A1556G	p.Y519C	GGCCCTACCCTTG	.	355	156	262	0	.	0	0	0	0	0	5
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2816143	2816143	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SRRM2-93	NM_016333	exon11	c.A5614T	p.T1872S	CCAGCCACTCACC	.	161	73	155	0	.	0	0	0	0	0	5
MEFV	4210	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3296527	3296527	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MEFV-228	NM_000243	exon6	c.C1608T	p.H536H	GTACCTGTGCAAG	.	70	21	61	1	.	0	0	0	0	0	4
ADCY9	115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4164589	4164589	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADCY9-139	NM_001116	exon2	c.G855T	p.G285G	GAGCAGCCCCCTG	.	87	36	78	0	.	0	0	0	0	0	5
CIITA	4261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	11000690	11000690	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CIITA-226	NM_000246	exon11	c.T1341G	p.F447L	CGACTTTGTCTTC	.	83	19	62	0	.	0	0	0	0	0	5
KIAA0430	9665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	15732947	15732947	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA0430-90	NM_014647	exon2	c.G144C	p.T48T	AGTTACCGTTTGG	.	86	36	139	0	.	0	0	0	0	0	5
XYLT1	64131	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	17228440	17228440	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	XYLT1-94	NM_022166	exon9	c.C1917G	p.D639E	GATGCCGTCAGGC	.	96	18	78	1	.	0	0	0	0	0	4
C16orf62	57020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19628040	19628040	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C16orf62-69	NM_020314	exon14	c.G1401T	p.V467V	GCTGGTGGTCCAA	.	162	45	140	0	.	0	0	0	0	0	5
GP2	2813	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	20327304	20327304	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GP2-94	NM_001007240	exon10	c.T1484G	p.L495R	AAATCTAGAACCC	.	116	57	120	1	.	0	0	0	0	0	4
GP2	2813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	20331586	20331586	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GP2-94	NM_001007240	exon6	c.G865T	p.E289X	TTACCTCCAGAAT	.	93	27	110	0	.	0	0	0	0	0	5
ACSM2A	123876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	20476935	20476935	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACSM2A-91	NM_001010845	exon4	c.C274T	p.Q92X	AGCCAGCAGGCAG	.	443	57	400	0	.	0	0	0	0	0	5
HS3ST2	9956	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	22825984	22825984	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HS3ST2-516	NM_006043	exon1	c.G53A	p.R18H	GGGCGCGCAGGCT	.	85	51	14	0	.	0	0	0	0	0	3
HS3ST2	9956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	22926624	22926624	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HS3ST2-516	NM_006043	exon2	c.C845A	p.A282D	ACCCGGCCGGCGA	.	138	68	138	0	.	0	0	0	0	0	5
ERN2	10595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23716290	23716290	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ERN2-322	NM_033266	exon8	c.C912G	p.L304L	GAGGGCGAGGAAA	.	212	91	73	0	.	0	0	0	0	0	5
RBBP6	5930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24582830	24582830	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBBP6-230	NM_006910	exon18	c.G4443T	p.E1481D	CAGAGAGTATTCA	.	78	19	81	0	.	0	0	0	0	0	5
SLC5A11	115584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24909414	24909414	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC5A11-92	NM_052944	exon10	c.C990G	p.S330R	GGTCAGCCGCATC	.	68	16	51	0	.	0	0	0	0	0	5
C16orf82	162083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27078584	27078584	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145545	exon1	c.G268T	p.G90W	AGCAGCGGGTACG	.	64	19	66	0	.	0	0	0	0	0	5
KIAA0556	23247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27709688	27709688	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA0556-141	NM_015202	exon9	c.G980T	p.R327L	CAACCCGCAAAAC	.	79	16	59	0	.	0	0	0	0	0	5
NFATC2IP	84901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28970367	28970367	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NFATC2IP-91	NM_032815	exon7	c.G1047T	p.Q349H	GCTCCAGCTCCGG	.	254	92	239	0	.	0	0	0	0	0	5
C16orf92	146378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30035165	30035165	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C16orf92-68	NM_001109660	exon2	c.C248A	p.A83D	CTGTGGCCCAGTT	.	137	72	119	0	.	0	0	0	0	0	5
FBXL19	54620	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30958250	30958250	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXL19-661	NM_001099784	exon10	c.G1887T	p.L629L	GACCCTGGTGCAC	.	155	39	104	1	.	0	0	0	0	0	3
ARMC5	79798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31477303	31477303	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARMC5-24	NM_001105247	exon5	c.G1997T	p.R666L	TCTGCCGGTGAGT	.	61	28	73	0	.	0	0	0	0	0	5
SHCBP1	79801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	46637518	46637518	+	Silent	SNP	A	A	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SHCBP1-154	NM_024745	exon8	c.T1146G	p.V382V	AACAATAACAGTG	.	334	148	282	0	.	0	0	0	0	0	5
ABCC12	94160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	48134826	48134826	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCC12-93	NM_033226	exon21	c.G2995T	p.G999C	TGATGCCCAGGCC	.	203	78	188	0	.	0	0	0	0	0	5
ABCC12	94160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	48173122	48173122	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCC12-93	NM_033226	exon5	c.C783A	p.P261P	AGCTGTGGGCCCC	.	116	22	108	0	.	0	0	0	0	0	5
ABCC11	85320	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	48234290	48234290	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCC11-95	NM_033151	exon14	c.C1979T	p.P660L	GACAGGGGGTCGT	.	150	78	135	1	.	0	0	0	0	0	3
NOD2	64127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	50744557	50744557	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOD2-231	NM_022162	exon4	c.G735T	p.T245T	AGAGACGCTCTGC	.	129	28	140	0	.	0	0	0	0	0	5
SALL1	6299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	51173113	51173113	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SALL1-98	NM_002968	exon2	c.G3020C	p.G1007A	GTTTTGCCACAAA	.	120	23	145	0	.	0	0	0	0	0	5
IRX6	79190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	55360430	55360430	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IRX6-174	NM_024335	exon2	c.G228T	p.A76A	CTATGCGGCCGCT	.	126	56	86	0	.	0	0	0	0	0	4
IRX6	79190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	55362936	55362936	+	Missense_Mutation	SNP	C	C	A	rs200996745	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IRX6-174	NM_024335	exon5	c.C1046A	p.P349Q	AGAAACCGCGCAT	.	156	31	127	0	C|0.999;T|0.000	0	0	0	0	0	5
CES5A	221223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	55880508	55880508	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CES5A-94	NM_001190158	exon14	c.G1670T	p.G557V	CTCTGTCCGAGGC	.	141	73	167	0	.	0	0	0	0	0	5
NUP93	9688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	56782300	56782300	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NUP93-205	NM_014669	exon2	c.C141G	p.T47T	CCGTACCCTAACA	.	77	32	93	0	.	0	0	0	0	0	5
SLC12A3	6559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	56936360	56936360	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC12A3-155	NM_000339	exon24	c.G2823A	p.E941E	CAACGAGATGCGG	.	157	28	146	0	.	0	0	0	0	0	5
CCDC135	84229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57732900	57732900	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC135-90	NM_032269	exon3	c.C342A	p.P114P	CGTGCCCCTCTTC	.	114	24	109	0	.	0	0	0	0	0	4
CCDC135	84229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57735916	57735916	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC135-90	NM_032269	exon5	c.G573C	p.T191T	CAGTACGCTGCTC	.	195	25	189	0	.	0	0	0	0	0	4
SLC38A7	55238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	58713931	58713931	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC38A7-69	NM_018231	exon3	c.G100T	p.A34S	TGGGGGCTGTGTC	.	80	32	85	0	.	0	0	0	0	0	5
GOT2	2806	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	58768113	58768113	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GOT2-91	NM_002080	exon1	c.G20T	p.G7V	ACGCGGCCGGAGT	.	127	44	15	0	.	0	0	0	0	0	4
CDH8	1006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	61851398	61851398	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH8-161	NM_001796	exon7	c.C1262G	p.T421S	CTGGAAGTGATAT	.	134	53	146	0	.	0	0	0	0	0	5
DPEP3	64180	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	68012505	68012505	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DPEP3-71	NM_001129758	exon3	c.C514A	p.Q172K	GGGACTGGCATGA	.	171	37	136	1	.	0	0	0	0	0	3
DPEP3	64180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	68012506	68012506	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DPEP3-71	NM_001129758	exon3	c.C513A	p.C171X	GGACTGGCATGAG	.	170	37	136	0	.	0	0	0	0	0	4
PDPR	55066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70182454	70182454	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDPR-135	NM_017990	exon17	c.G2050A	p.E684K	CCCATAGAGGTGA	.	405	56	342	0	.	0	0	0	0	0	5
FUK	197258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70512517	70512517	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FUK-91	NM_145059	exon22	c.C2893T	p.R965W	CTGGTACGGCAAA	.	65	29	49	0	.	0	0	0	0	0	5
DHX38	9785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	72144969	72144969	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DHX38-227	NM_014003	exon26	c.A3592T	p.S1198C	CTGGGCAGTGTCA	.	104	17	36	0	.	0	0	0	0	0	4
ADAT1	23536	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	75637040	75637040	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAT1-92	NM_012091	exon10	c.G1319T	p.R440I	AATGATCTGAAGA	.	111	13	125	0	.	0	0	0	0	0	3
CNTNAP4	85445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	76486501	76486501	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTNAP4-70	NM_138994	exon7	c.G949T	p.E317X	GGAGAGGAGGAGG	.	64	21	92	0	.	0	0	0	0	0	5
CNTNAP4	85445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	76555117	76555117	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTNAP4-70	NM_138994	exon15	c.G2227C	p.D743H	AGCGCGGATGTAT	.	34	15	60	0	.	0	0	0	0	0	5
VAT1L	57687	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	77913114	77913114	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VAT1L-90	NM_020927	exon6	c.C875A	p.A292E	GCTTTGCAAAATC	.	161	30	252	1	.	0	0	0	0	0	4
C16orf74	404550	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	85743810	85743810	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C16orf74-22	NM_206967	exon3	c.C132A	p.T44T	CGTGGGGGTGGGG	.	79	29	58	1	.	0	0	0	0	0	3
ZCCHC14	23174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	87445728	87445728	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZCCHC14-154	NM_015144	exon12	c.A2188T	p.S730C	TGGAGCTGGGGGC	.	59	11	58	0	.	0	0	0	0	0	4
ZNF469	84627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	88494585	88494585	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001127464	exon1	c.C707G	p.P236R	CCTGGCCTCCCGC	.	80	27	129	0	.	0	0	0	0	0	4
ZNF469	84627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	88495049	88495049	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001127464	exon1	c.C1171A	p.L391M	GATGGGCTGGGGA	.	94	31	79	0	.	0	0	0	0	0	4
ZNF469	84627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	88502418	88502418	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001127464	exon2	c.A8456T	p.K2819M	GTGCCAAGGATCC	.	42	12	49	0	.	0	0	0	0	0	5
VPS53	55275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	505108	505108	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VPS53-90	NM_001128159	exon12	c.C1145T	p.T382I	GGATTGGTAGATG	.	79	22	79	0	.	0	0	0	0	0	5
OR1A2	26189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3101229	3101229	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR1A2-70	NM_012352	exon1	c.G417T	p.R139R	TCCACGGTCTTGT	.	214	46	232	0	.	0	0	0	0	0	5
GSG2	83903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3628702	3628702	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GSG2-297	NM_031965	exon1	c.G1473T	p.G491G	GATTGGGGAAGGG	.	146	27	163	0	.	0	0	0	0	0	5
ITGAE	3682	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3655152	3655152	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITGAE-161	NM_002208	exon15	c.T1685C	p.L562S	CGTGCCAAGGAGA	.	204	54	221	0	.	0	0	0	0	0	4
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3955316	3955316	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZZEF1-93	NM_015113	exon35	c.A5549T	p.D1850V	AAGTCATCGCAAA	.	110	23	128	0	.	0	0	0	0	0	5
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3973982	3973982	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZZEF1-93	NM_015113	exon26	c.A4071T	p.K1357N	ACCATATTTTTGC	.	56	26	56	0	.	0	0	0	0	0	5
SPNS3	201305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4351540	4351540	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPNS3-153	NM_182538	exon6	c.G712T	p.G238W	GGGGAGGGGGCCG	.	98	42	65	0	.	0	0	0	0	0	5
MYBBP1A	10514	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	4453405	4453405	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYBBP1A-92	NM_014520	exon9	c.1267delG	p.V423fs	AGTCAACCAAGGA	.	163	41	215	0	.	0	0	0	0	0	3
NLRP1	22861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	5436275	5436275	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRP1-274	NM_001033053	exon11	c.G3175T	p.E1059X	AGAGTTCCACCGG	.	109	41	108	0	.	0	0	0	0	0	5
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578413	7578413	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TP53-70225	NM_000546	exon5	c.G517T	p.V173L	GCCTCACAACCTC	.	176	72	159	0	.	0	0	0	0	0	5
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578534	7578534	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TP53-70225	NM_000546	exon5	c.G396C	p.K132N	AAACATCTTGTTG	.	89	18	80	0	.	0	0	0	0	0	5
PER1	5187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8053364	8053364	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PER1-723	NM_002616	exon4	c.G454C	p.E152Q	GGCGCTCTGGCGG	.	99	28	138	0	.	0	0	0	0	0	5
AURKB	9212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8110524	8110524	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AURKB-1508	NM_004217	exon5	c.G368A	p.R123H	TCTCTGCGCAGCT	.	93	24	75	0	.	0	0	0	0	0	5
PIK3R6	146850	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8741937	8741937	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	.	.	.	.	GATCTCGCTCGAC	.	75	29	76	0	.	0	0	0	0	0	4
USP43	124739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	9631601	9631601	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP43-637	NM_153210	exon15	c.G2666T	p.G889V	CAGCCGGGGTGCC	.	266	112	252	0	.	0	0	0	0	0	5
GLP2R	9340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	9792935	9792935	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GLP2R-524	NM_004246	exon13	c.C1575A	p.P525P	CTGGCCCCGGGGC	.	101	42	89	0	.	0	0	0	0	0	5
MYH13	8735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10227550	10227550	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYH13-6	NM_003802	exon23	c.G2723T	p.R908L	TCACACCGTTCCT	.	93	21	74	0	.	0	0	0	0	0	5
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10293878	10293878	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYH8-101	NM_002472	exon40	c.C5707A	p.Q1903K	CATGCTGGAGTTT	.	66	13	81	0	.	0	0	0	0	0	4
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	10303798	10303798	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYH8-101	NM_002472	exon27	c.G3644T	p.R1215L	TTGACCCGCTGCA	.	55	24	46	0	.	0	0	0	0	0	4
MYH4	4622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10353829	10353829	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYH4-102	NM_017533	exon30	c.G4122T	p.Q1374H	CCTCCACTGGGCA	.	131	20	115	0	.	0	0	0	0	0	5
MYH4	4622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10356511	10356511	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYH4-102	NM_017533	exon24	c.C3069A	p.T1023T	GGTCAGGGTGTTG	.	162	75	224	0	.	0	0	0	0	0	5
MYH4	4622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10357111	10357111	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYH4-102	NM_017533	exon23	c.A2783G	p.E928G	GCTCTTTCAGTTA	.	193	39	258	0	.	0	0	0	0	0	5
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10402002	10402002	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYH1-171	NM_005963	exon30	c.G4122A	p.Q1374Q	CCTCCACTGGGCA	.	102	37	88	0	.	0	0	0	0	0	5
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10408289	10408289	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYH1-171	NM_005963	exon22	c.C2529A	p.L843L	TTTGAGGAGGGGT	.	83	28	63	0	.	0	0	0	0	0	5
MYH2	4620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10428845	10428845	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYH2-194	NM_017534	exon32	c.T4460A	p.L1487Q	TTGAACAGCTCAG	.	57	10	62	0	.	0	0	0	0	0	4
MYH3	4621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10535908	10535908	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYH3-95	NM_002470	exon34	c.G4841T	p.R1614L	TTGAGCCGGATGG	.	60	27	64	0	.	0	0	0	0	0	5
SHISA6	388336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11461111	11461111	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SHISA6-67	NM_207386	exon6	c.C1146T	p.H382H	GCGGCACCTGCCC	.	99	30	101	0	.	0	0	0	0	0	5
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11592948	11592948	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH9-168	NM_001372	exon20	c.C3809A	p.S1270Y	TGGAATCCACTAT	.	82	31	110	0	.	0	0	0	0	0	5
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11725237	11725237	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH9-168	NM_001372	exon46	c.G8708C	p.G2903A	TCCCAGGGGAGAT	.	75	21	61	0	.	0	0	0	0	0	5
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11738038	11738038	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH9-168	NM_001372	exon49	c.C9330A	p.V3110V	TCAGGTCGTGGGT	.	267	46	233	0	.	0	0	0	0	0	5
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	11772530	11772530	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH9-168	NM_001372	exon51	c.C10013A	p.A3338D	AAGAAGCCGAAGT	.	36	4	50	0	.	0	0	0	0	0	4
MYOCD	93649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	12656026	12656026	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYOCD-93	NM_001146312	exon10	c.C1421A	p.T474N	CGGACACCTTCAA	.	137	30	113	0	.	0	0	0	0	0	5
HS3ST3A1	9955	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	13504387	13504387	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HS3ST3A1-515	NM_006042	exon1	c.C60A	p.S20R	GAAGATGCTGCGG	.	166	42	94	0	.	0	0	0	0	0	4
TBC1D26	353149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	15638662	15638662	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBC1D26-90	.	.	.	.	TTGCAGGATGGAG	.	258	63	264	0	.	0	0	0	0	0	4
PEMT	10400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	17415964	17415964	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PEMT-90	NM_001267552	exon4	c.A325G	p.T109A	CCTGCGTGAAGCT	.	179	73	113	0	.	0	0	0	0	0	5
RAI1	10743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	17701546	17701546	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAI1-91	NM_030665	exon3	c.G5284C	p.D1762H	CCAGCTGACCCGG	.	70	13	14	0	.	0	0	0	0	0	4
FLII	2314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18148680	18148680	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FLII-91	NM_002018	exon29	c.G3663C	p.L1221L	GGCCTTCAGGCTC	.	127	57	150	0	.	0	0	0	0	0	5
MAP2K3	5606	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	21201734	21201734	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAP2K3-790	NM_145109	exon2	c.A59G	p.K20R	AATCCAAGAGGAA	.	190	28	225	0	.	0	0	0	0	0	4
KCNJ18	100134444	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	21319147	21319147	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001194958	exon3	c.C493G	p.Q165E	GTGGCCCAGTCCA	.	267	42	206	1	.	0	0	0	0	0	3
KCNJ18	100134444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	21319212	21319212	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001194958	exon3	c.G558C	p.R186S	GGCAAGGCCCAAG	.	320	23	240	0	.	0	0	0	0	0	3
KCNJ18	100134444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	21319910	21319910	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001194958	exon3	c.G1256T	p.G419V	CTGGCGGCGGGGT	.	95	7	59	0	.	0	0	0	0	0	3
GIT1	28964	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	27901828	27901830	+	In_Frame_Del	DEL	GGC	GGC	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GGC	GGC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GIT1-251	NM_001085454	exon21	c.2203_2205del	p.735_735del	CACTGGGGCGCCG	.	57	10	54	0	.	0	0	0	0	0	3
EFCAB5	374786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	28407846	28407846	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EFCAB5-70	NM_198529	exon17	c.C3273T	p.N1091N	CTGGAACCAGTCC	.	155	34	189	0	.	0	0	0	0	0	5
CPD	1362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	28748840	28748840	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CPD-92	NM_001304	exon4	c.A1296T	p.V432V	TACAGTAGTTTTA	.	68	18	77	0	.	0	0	0	0	0	5
CRLF3	51379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29120477	29120477	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRLF3-90	NM_015986	exon5	c.G817C	p.V273L	GAGGCACCAATGT	.	111	46	120	0	.	0	0	0	0	0	5
SPACA3	124912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	31322454	31322454	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPACA3-92	NM_173847	exon2	c.C62A	p.P21H	CTTCTCCTTCTGT	.	130	20	131	0	.	0	0	0	0	0	4
ASIC2	40	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	31618866	31618866	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_183377	exon1	c.G268T	p.V90L	CCAGCACCCACAG	.	69	20	39	0	.	0	0	0	0	0	4
UNC45B	146862	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	33498375	33498375	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UNC45B-157	NM_173167	exon13	c.C1730A	p.T577N	TGGCCACCACCCT	.	179	82	154	2	.	0	0	0	0	0	3
UNC45B	146862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33504573	33504573	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UNC45B-157	NM_173167	exon17	c.G2205T	p.Q735H	GCTTCAGAACTAT	.	79	45	63	0	.	0	0	0	0	0	5
SLC35G3	146861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33520493	33520493	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_152462	exon1	c.C834T	p.H278H	GGCAGGGTGGGCC	.	251	53	219	0	.	0	0	0	0	0	5
SLFN5	162394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33592239	33592239	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLFN5-92	NM_144975	exon5	c.C2008T	p.Q670X	ATCACTCAGACAG	.	184	26	221	0	.	0	0	0	0	0	5
SLFN13	146857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33768243	33768243	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLFN13-91	NM_144682	exon6	c.C2065G	p.Q689E	CTCTCTGAGTGAT	.	118	23	120	0	.	0	0	0	0	0	5
STARD3	10948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37818535	37818535	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STARD3-90	NM_006804	exon14	c.C1171T	p.L391F	ATCGTGCTCAAGT	.	146	46	120	0	.	0	0	0	0	0	5
MED24	9862	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38179422	38179422	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MED24-187	NM_014815	exon20	c.A2212G	p.M738V	CGCCCATGTGCAG	.	238	114	221	2	.	0	0	0	0	0	3
KRTAP9-8	83901	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	39394402	39394402	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRTAP9-8-1	NM_031963	exon1	c.C99G	p.C33W	CTGCTGCCAGCCC	.	94	19	110	1	.	0	0	0	0	0	3
KRT36	8689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39645883	39645883	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRT36-90	NM_003771	exon1	c.G234T	p.V78V	GCTCCCCACAAAG	.	118	36	105	0	.	0	0	0	0	0	5
KRT14	3861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39742633	39742633	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRT14-91	NM_000526	exon1	c.C454G	p.Q152E	GCCTCTGGTACCA	.	238	52	242	0	.	0	0	0	0	0	5
KRT16	3868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39766464	39766464	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRT16-91	NM_005557	exon7	c.C1305T	p.G435G	GGATTGGCCAGAT	.	284	57	263	0	.	0	0	0	0	0	5
LEPREL4	10609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39964251	39964251	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LEPREL4-90	NM_006455	exon5	c.G922A	p.D308N	GCACATCATTCAC	.	199	35	213	0	.	0	0	0	0	0	5
ACLY	47	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40054039	40054039	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACLY-228	NM_001096	exon13	c.G1392T	p.V464V	AGGCGCCACCTCA	.	70	35	66	0	.	0	0	0	0	0	5
GHDC	84514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40344460	40344460	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GHDC-90	NM_001142623	exon5	c.G688A	p.G230R	GCGCTCCAGGGTT	.	82	39	62	0	.	0	0	0	0	0	5
ITGA2B	3674	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42452028	42452028	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITGA2B-228	NM_000419	exon28	c.A2942T	p.Q981L	CTCACCTGAGCTT	.	94	18	96	1	.	0	0	0	0	0	4
ADAM11	4185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42847371	42847371	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAM11-227	NM_002390	exon4	c.C336G	p.Y112X	GCAATACGTGGAG	.	144	24	103	0	.	0	0	0	0	0	5
KANSL1	284058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	44117207	44117207	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001193466	exon8	c.G2064T	p.Q688H	CTGCCACTGAGAT	.	95	20	93	0	.	0	0	0	0	0	4
OSBPL7	114881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	45894628	45894628	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OSBPL7-68	NM_145798	exon8	c.A696T	p.T232T	CTGGTGTGTGGGG	.	33	18	63	0	.	0	0	0	0	0	5
IGF2BP1	10642	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47121377	47121377	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGF2BP1-226	NM_006546	exon11	c.G1249T	p.V417L	CAGGCAGTGGGCG	.	115	56	116	1	.	0	0	0	0	0	4
ITGA3	3675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48154781	48154781	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITGA3-229	NM_005501	exon16	c.G2109T	p.E703D	TTGCGAGCTGGGG	.	135	25	136	0	.	0	0	0	0	0	5
SGCA	6442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48246526	48246526	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SGCA-92	NM_000023	exon6	c.G658T	p.A220S	AGCCACGCCCGCT	.	59	28	72	0	.	0	0	0	0	0	5
CACNA1G	8913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48677192	48677192	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNA1G-67	NM_001256360	exon17	c.G3662A	p.G1221E	TGGATGGGGATGA	.	91	38	61	0	.	0	0	0	0	0	5
KIF2B	84643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	51900753	51900753	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF2B-98	NM_032559	exon1	c.C359G	p.P120R	TGATCCCCCAGAA	.	64	36	75	0	.	0	0	0	0	0	5
KIF2B	84643	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	51900846	51900846	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF2B-98	NM_032559	exon1	c.452delG	p.W151fs	GCCTCTGGGAAAT	.	75	29	71	0	.	0	0	0	0	0	3
TOM1L1	10040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	53014522	53014522	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TOM1L1-91	NM_005486	exon10	c.G968T	p.S323I	GTCCCAGTCCCCG	.	32	14	39	0	.	0	0	0	0	0	5
NOG	9241	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	54671840	54671840	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOG-90	NM_005450	exon1	c.G256T	p.D86Y	CCCGAGGACCGGC	.	68	17	17	0	.	0	0	0	0	0	4
LPO	4025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56326518	56326518	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LPO-91	NM_006151	exon5	c.T423C	p.I141I	CACCATTACGGGA	.	69	18	68	0	.	0	0	0	0	0	5
MTMR4	9110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56570286	56570286	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MTMR4-91	NM_004687	exon17	c.G3238T	p.D1080Y	CAGTATCACTGCC	.	213	33	262	0	.	0	0	0	0	0	5
MTMR4	9110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56570288	56570288	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MTMR4-91	NM_004687	exon17	c.G3236T	p.S1079I	GTATCACTGCCAT	.	209	33	263	0	.	0	0	0	0	0	5
SEPT4	5414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56598641	56598641	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEPT4-68	NM_001256782	exon10	c.G1133C	p.R378P	TAGAGTCGACCCC	.	138	33	160	0	.	0	0	0	0	0	5
TEX14	56155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56676889	56676889	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TEX14-810	NM_001201457	exon14	c.A1835T	p.E612V	CTGGCCTCTTCTG	.	105	51	69	0	.	0	0	0	0	0	5
HEATR6	63897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	58137396	58137396	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HEATR6-227	NM_022070	exon10	c.C1478G	p.S493C	GCAACAGAAAGAA	.	95	15	99	0	.	0	0	0	0	0	4
NACA2	342538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	59668146	59668146	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NACA2-91	NM_199290	exon1	c.T396A	p.S132S	TTGCTGAGATAAA	.	120	75	116	0	.	0	0	0	0	0	5
EFCAB3	146779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60484029	60484029	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EFCAB3-227	NM_001144933	exon9	c.T833A	p.L278H	AAGAGCTCAAGAG	.	64	24	69	0	.	0	0	0	0	0	5
GH2	2689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61958131	61958131	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GH2-93	NM_022557	exon4	c.G457T	p.V153L	CCCTCACCCACAT	.	163	32	180	0	.	0	0	0	0	0	5
ABCA6	23460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	67094069	67094069	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCA6-159	NM_080284	exon23	c.G3112T	p.D1038Y	TGTAATCACTGAT	.	17	7	26	0	.	0	0	0	0	0	5
KCNJ2	3759	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	68171793	68171793	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNJ2-90	NM_000891	exon2	c.G613T	p.D205Y	ATGAGAGACGGCA	.	189	95	176	1	.	0	0	0	0	0	4
SDK2	54549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	71334923	71334923	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SDK2-24	NM_001144952	exon45	c.G6322T	p.G2108C	GCTCACCCGAGTC	.	174	41	187	0	.	0	0	0	0	0	5
GPR142	350383	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72368353	72368353	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR142-93	NM_181790	exon4	c.G1003T	p.A335S	AACTCGGCCATCA	.	205	82	170	2	.	0	0	0	0	0	4
CD300LB	124599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72522169	72522169	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CD300LB-91	NM_174892	exon2	c.G199T	p.G67W	GGGACCCCTGCTC	.	81	43	55	0	.	0	0	0	0	0	5
RAB37	326624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72725483	72725483	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAB37-230	NM_175738	exon2	c.C161T	p.A54V	TCTCGGCCACTGT	.	183	35	175	0	.	0	0	0	0	0	5
FADS6	283985	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72875688	72875688	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FADS6-22	NM_178128	exon5	c.G752T	p.R251L	TTGTCCCGGGAGA	.	178	46	183	1	.	0	0	0	0	0	3
OTOP2	92736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72926856	72926856	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OTOP2-134	NM_178160	exon6	c.G1126C	p.A376P	GGTGCCGCCCTGG	.	179	42	186	0	.	0	0	0	0	0	5
SLC16A5	9121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73096274	73096274	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC16A5-90	NM_001271765	exon5	c.C516T	p.F172F	TACCTTCCTTGTC	.	139	61	129	0	.	0	0	0	0	0	5
TRIM47	91107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73871533	73871533	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRIM47-659	NM_033452	exon5	c.C1224G	p.L408L	ACTCTCGAGGTCT	.	95	34	114	0	.	0	0	0	0	0	5
UBE2O	63893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74392628	74392628	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBE2O-272	NM_022066	exon14	c.G2390T	p.G797V	ATCAGCCCGGCCA	.	46	15	48	0	.	0	0	0	0	0	5
GAA	2548	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78091491	78091491	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GAA-91	NM_001079803	exon18	c.G2424T	p.P808P	GCTGCCGGCCCCC	.	172	40	125	1	.	0	0	0	0	0	4
BAHCC1	57597	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	79428055	79428055	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BAHCC1-23	.	.	.	.	GAACCTCTTCCAG	.	130	34	28	0	.	0	0	0	0	0	3
HEXDC	284004	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	80393626	80393626	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HEXDC-92	NM_173620	exon6	c.C509T	p.T170M	ACAGCACGGGGAA	.	172	68	69	1	.	0	0	0	0	0	3
COLEC12	81035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	321761	321761	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COLEC12-92	NM_130386	exon9	c.C2110A	p.P704T	CTCCTGGCCCATG	.	57	30	60	0	.	0	0	0	0	0	5
CLUL1	27098	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	627305	627305	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLUL1-92	NM_199167	exon5	c.A632G	p.Q211R	TTGACCAGACTTT	.	128	57	147	1	.	0	0	0	0	0	3
MYOM1	8736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	3067394	3067394	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYOM1-94	NM_003803	exon38	c.G4924T	p.G1642C	ATTTGCCCGAGTC	.	166	39	126	0	.	0	0	0	0	0	5
C18orf42	642597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	5145576	5145576	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145194	exon2	c.G195C	p.K65N	TTCGTGCTTCTTG	.	196	43	221	0	.	0	0	0	0	0	5
ANKRD12	23253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	9258888	9258888	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD12-92	NM_015208	exon9	c.C5623G	p.L1875V	TCATATCTCCTGG	.	164	45	177	0	.	0	0	0	0	0	5
TXNDC2	84203	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	9886692	9886692	+	Silent	SNP	G	G	T	rs114777727	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TXNDC2-92	NM_001098529	exon2	c.G216T	p.T72T	CCACACGTTCCAC	.	98	46	109	0	G|0.996;A|0.004	0	0	0	0	0	4
CIDEA	1149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	12277152	12277152	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CIDEA-91	NM_001279	exon5	c.C543A	p.A181A	CTCCGCCCAGGTG	.	132	63	140	0	.	0	0	0	0	0	5
PTPN2	5771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	12817252	12817252	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPN2-652	NM_001207013	exon7	c.G677T	p.G226V	AAGGAGCCAGATT	.	203	93	204	0	.	0	0	0	0	0	5
ANKRD30B	374860	broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	14748439	14748439	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD30B-24	NM_001145029	exon1	c.C21A	p.A7A	AGCTGCCGCTGGC	.	94	27	59	1	.	0	0	0	0	0	3
ANKRD30B	374860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	14787090	14787090	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD30B-24	NM_001145029	exon15	c.G1725T	p.W575C	TTCTTGGGATTCT	.	132	52	154	0	.	0	0	0	0	0	5
ANKRD30B	374860	broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	14851981	14851981	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD30B-24	NM_001145029	exon36	c.G3681A	p.E1227E	CAATGAGGTGCTC	.	173	40	234	0	.	0	0	0	0	0	3
GREB1L	80000	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	18975392	18975392	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001142966	exon5	c.G402A	p.M134I	GTGTATGGAACAA	.	96	32	92	2	.	0	0	0	0	0	4
TTC39C	125488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21646036	21646036	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTC39C-91	NM_001135993	exon3	c.A277G	p.T93A	AAAACCACAGAAA	.	151	73	183	0	.	0	0	0	0	0	5
SS18	6760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	23615884	23615884	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SS18-1968	NM_001007559	exon8	c.A884G	p.H295R	TCATTATGACCTA	.	51	20	69	0	.	0	0	0	0	0	5
CDH2	1000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	25565561	25565561	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH2-525	NM_001792	exon12	c.C1906A	p.P636T	CAAATGGTCCAGC	.	87	17	96	0	.	0	0	0	0	0	5
CDH2	1000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	25593747	25593747	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH2-525	NM_001792	exon3	c.C299A	p.A100D	AACTTGGCATGCT	.	75	19	77	0	.	0	0	0	0	0	5
DSG1	1828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	28906904	28906904	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DSG1-519	NM_001942	exon3	c.G152T	p.W51L	GTGAATGGATCAA	.	355	155	461	1	.	0	0	0	0	0	5
DSG3	1830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	29049291	29049291	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DSG3-98	NM_001944	exon12	c.C1876T	p.L626F	CTGCTCCTTGGTC	.	88	35	70	0	.	0	0	0	0	0	5
KLHL14	57565	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	30350407	30350407	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLHL14-91	NM_020805	exon2	c.G148A	p.V50M	CCAGCACGGCCTT	.	100	31	78	1	.	0	0	0	0	0	3
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	31323338	31323338	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASXL3-49	NM_030632	exon12	c.C3526A	p.R1176R	CACCTCCGGGAGA	.	42	24	58	0	.	0	0	0	0	0	5
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	31325189	31325189	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASXL3-49	NM_030632	exon12	c.G5377C	p.E1793Q	GCACCAGAGAGAA	.	65	11	93	0	.	0	0	0	0	0	4
DTNA	1837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	32431876	32431876	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DTNA-153	NM_001390	exon14	c.C1435A	p.L479I	GCTGAGCTAGAAA	.	204	93	195	0	.	0	0	0	0	0	5
FHOD3	80206	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	34297943	34297943	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FHOD3-139	NM_025135	exon16	c.G2157T	p.R719S	TGGGAGGACCCAG	.	161	28	160	1	.	0	0	0	0	0	4
KIAA1328	57536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	34646889	34646889	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1328-90	NM_020776	exon7	c.G613C	p.V205L	TCATCTGTGGAAC	.	202	43	181	0	.	0	0	0	0	0	5
CELF4	56853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	34853088	34853088	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CELF4-92	NM_020180	exon7	c.G840C	p.A280A	GCCCTGCGCGACT	.	314	147	249	0	.	0	0	0	0	0	5
PIK3C3	5289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	39567811	39567811	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIK3C3-1312	NM_002647	exon5	c.A567G	p.K189K	GGTGAAAGTAGAT	.	133	73	162	0	.	0	0	0	0	0	5
SLC14A2	8170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	43207111	43207111	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC14A2-93	NM_001242692	exon5	c.A520T	p.R174W	CAAGACAGGTGGG	.	120	22	86	0	.	0	0	0	0	0	5
SLC14A2	8170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	43219733	43219733	+	Missense_Mutation	SNP	G	G	T	rs137884313	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC14A2-93	NM_001242692	exon8	c.G866T	p.G289V	CTGTTGGGGTCGG	.	95	21	94	0	G|1.000;A|0.000	0	0	0	0	0	5
EPG5	57724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	43458387	43458387	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPG5-580	NM_020964	exon34	c.A5896G	p.I1966V	GCTGAATGATTAC	.	62	14	54	0	.	0	0	0	0	0	5
LOXHD1	125336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	44104755	44104755	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_144612	exon30	c.C4656A	p.N1552K	GTCCTCGTTGGTG	.	207	74	248	0	.	0	0	0	0	0	5
TCEB3B	51224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	44561326	44561326	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TCEB3B-156	NM_016427	exon1	c.C310T	p.Q104X	GGTCCTGAAGAGC	.	66	36	52	0	.	0	0	0	0	0	5
ME2	4200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	48458690	48458690	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ME2-90	NM_001168335	exon13	c.C1377G	p.V459V	GCGAGTCTTTACA	.	151	23	185	0	.	0	0	0	0	0	5
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	50278479	50278479	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DCC-225	NM_005215	exon2	c.C147G	p.A49A	TGATGCCGTCACA	.	57	8	66	0	.	0	0	0	0	0	4
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	50985607	50985607	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DCC-225	NM_005215	exon24	c.G3398C	p.R1133P	GGAAACGGGCCAC	.	62	22	80	0	.	0	0	0	0	0	5
CDH20	28316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	59221763	59221763	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH20-155	NM_031891	exon11	c.G2241T	p.T747T	CCAGACGTATATG	.	115	54	83	0	.	0	0	0	0	0	5
TNFRSF11A	8792	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	60036089	60036089	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNFRSF11A-659	NM_003839	exon9	c.A939G	p.V313V	ATGTGTAGGAGGT	.	237	63	224	1	.	0	0	0	0	0	3
SERPINB7	8710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61460444	61460444	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SERPINB7-226	NM_001261830	exon4	c.C269A	p.S90Y	ATGCATCCCACAA	.	89	21	105	0	.	0	0	0	0	0	5
SERPINB8	5271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61654266	61654266	+	Missense_Mutation	SNP	C	C	A	rs146637081	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SERPINB8-226	NM_198833	exon7	c.C879A	p.D293E	TTTTGACGAAGCC	.	153	66	140	0	C|1.000;G|0.000	0	0	0	0	0	5
CDH7	1005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	63476945	63476945	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH7-94	NM_004361	exon3	c.C216G	p.H72Q	GCTTCACTCTGAT	.	94	40	108	0	.	0	0	0	0	0	5
CDH7	1005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	63511216	63511216	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH7-94	NM_004361	exon7	c.A1150T	p.M384L	TACCCTATGGAGG	.	119	32	124	0	.	0	0	0	0	0	5
CDH19	28513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	64239377	64239377	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH19-516	NM_021153	exon2	c.C65A	p.A22E	TCTGTTGCTCCAA	.	107	16	114	0	.	0	0	0	0	0	4
DSEL	92126	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	65179129	65179129	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DSEL-157	NM_032160	exon2	c.G2747T	p.W916L	ACCTTCCATTCAC	.	70	30	81	1	.	0	0	0	0	0	4
CCDC102B	79839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	66564598	66564598	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC102B-93	NM_001093729	exon8	c.G1196T	p.R399I	AAAATAGATTAAG	.	49	8	56	0	.	0	0	0	0	0	4
CCDC102B	79839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	66721282	66721282	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC102B-93	NM_001093729	exon10	c.A1450T	p.N484Y	TCCCTGAATCAGA	.	22	5	16	0	.	0	0	0	0	0	3
NETO1	81832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	70526196	70526196	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NETO1-94	NM_001201465	exon4	c.C334A	p.P112T	TTATTGGAGAAAA	.	124	49	143	0	.	0	0	0	0	0	5
ZNF407	55628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	72775251	72775251	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF407-92	NM_017757	exon8	c.G5574T	p.P1858P	AGCGCCGCCCCCT	.	253	62	203	0	.	0	0	0	0	0	5
CTDP1	9150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	77475469	77475469	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTDP1-90	NM_004715	exon8	c.G2009T	p.R670L	TCACTCGGCTGGT	.	112	46	70	0	.	0	0	0	0	0	5
STK11	6794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1220443	1220443	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STK11-5227	NM_000455	exon4	c.C536G	p.P179R	TCAAGCCGGGGAA	.	183	107	169	1	.	0	0	0	0	0	4
OAZ1	4946	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	2271846	2271846	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OAZ1-68	.	.	.	.	CGTCCAGTCCAGG	.	206	132	216	2	.	0	0	0	0	0	3
SGTA	6449	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	2757762	2757762	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SGTA-91	NM_003021	exon10	c.G756T	p.S252S	GCCACCCGAAATC	.	91	58	62	1	.	0	0	0	0	0	3
NFIC	4782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3449047	3449047	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NFIC-226	NM_001245004	exon7	c.A994T	p.K332X	ATGGACAAGTCAC	.	145	88	116	0	.	0	0	0	0	0	5
PTPRS	5802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	5239001	5239001	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPRS-357	NM_002850	exon13	c.G1778T	p.R593L	GCCAGGCGGAAGG	.	118	66	43	0	.	0	0	0	0	0	5
KHSRP	8570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6416662	6416662	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KHSRP-226	NM_003685	exon15	c.1328-1G>T	.	CGCCACCTGCAGA	.	78	43	87	0	.	0	0	0	0	0	5
VAV1	7409	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	6853959	6853959	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VAV1-1276	NM_005428	exon26	c.2334delG	p.V778fs	CACAGTGGGAAGC	.	23	17	26	0	.	0	0	0	0	0	3
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9060203	9060203	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUC16-566	NM_024690	exon3	c.C27243A	p.T9081T	TGTTTGGGTGGTA	.	115	71	196	0	.	0	0	0	0	0	5
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9062539	9062539	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUC16-566	NM_024690	exon3	c.G24907T	p.G8303C	CCAGGCCAGGGTT	.	94	54	145	0	.	0	0	0	0	0	5
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9070334	9070334	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUC16-566	NM_024690	exon3	c.T17112A	p.T5704T	GTGCGCAGTGTCT	.	188	104	271	0	.	0	0	0	0	0	5
COL5A3	50509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10106750	10106750	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL5A3-99	NM_015719	exon15	c.G1525T	p.G509W	GTGGCCCTTCTGC	.	149	85	161	0	.	0	0	0	0	0	5
TYK2	7297	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10476223	10476223	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TYK2-1009	NM_003331	exon7	c.G981A	p.W327X	TACTGGCCACCAC	.	78	32	62	1	.	0	0	0	0	0	3
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11150201	11150201	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMARCA4-1523	NM_001128849	exon30	c.G4238A	p.G1413D	AGCGTGGCCTTCA	.	65	39	74	0	.	0	0	0	0	0	5
CACNA1A	773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13565966	13565966	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNA1A-67	NM_001127222	exon2	c.G354T	p.E118D	ATGCTGCTCCAGT	.	96	55	127	0	.	0	0	0	0	0	5
SLC1A6	6511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15083539	15083539	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC1A6-186	NM_001272087	exon4	c.A184T	p.T62S	TGACCGTCAGCAG	.	321	145	227	1	.	0	0	0	0	0	4
PGLYRP2	114770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15586650	15586650	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PGLYRP2-93	NM_052890	exon2	c.G831C	p.L277L	CCCATCCAGGGCG	.	55	12	59	0	.	0	0	0	0	0	4
CYP4F3	4051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15752302	15752302	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CYP4F3-93	NM_001199209	exon2	c.G77A	p.G26E	TGGTTGGGGCCTC	.	121	69	133	0	.	0	0	0	0	0	5
SIN3B	23309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16973222	16973222	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SIN3B-228	NM_015260	exon9	c.T1118A	p.F373Y	TGTCCTTCGCGCC	.	58	29	84	0	.	0	0	0	0	0	5
MYO9B	4650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17303667	17303667	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO9B-67	NM_001130065	exon21	c.A2924T	p.H975L	GTCGGCACTTCCT	.	154	93	107	0	.	0	0	0	0	0	5
FAM129C	199786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17643172	17643172	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM129C-90	NM_001098524	exon4	c.G380T	p.R127L	ACGGCCGCCTAGA	.	172	105	199	0	.	0	0	0	0	0	5
ZNF90	7643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	20228898	20228898	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF90-48	NM_007138	exon4	c.G535T	p.G179C	GAATGTGGCAAAG	.	54	21	62	0	.	0	0	0	0	0	5
ZNF675	171392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23844980	23844980	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF675-228	NM_138330	exon3	c.C162T	p.T54T	CAGACAGGTGATC	.	36	17	45	0	.	0	0	0	0	0	5
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	31767667	31767667	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TSHZ3-232	NM_020856	exon2	c.C3032G	p.T1011S	TGTTCGGTGGACA	.	198	112	316	0	.	0	0	0	0	0	5
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	31768123	31768123	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TSHZ3-232	NM_020856	exon2	c.C2576A	p.T859K	TTTGACGTGTGGC	.	106	61	157	0	.	0	0	0	0	0	5
ZNF599	148103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35260460	35260460	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF599-92	NM_001007248	exon2	c.G19T	p.A7S	CTAATGCCTGGGA	.	58	36	92	0	.	0	0	0	0	0	5
MAG	4099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35786525	35786525	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAG-947	NM_080600	exon4	c.G56T	p.G19V	CCCGAGGGGGTCA	.	57	30	69	0	.	0	0	0	0	0	5
ZFP82	284406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36884174	36884174	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFP82-91	NM_133466	exon5	c.T1068C	p.H356H	TCTCTGATGGAGT	.	48	30	77	0	.	0	0	0	0	0	5
ZNF382	84911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37100830	37100830	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF382-90	NM_032825	exon3	c.G14T	p.G5V	TACAGGGATCAGT	.	157	85	172	0	.	0	0	0	0	0	5
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	38572624	38572624	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SIPA1L3-91	NM_015073	exon3	c.G419A	p.R140Q	TCCACCGACTCTC	.	84	23	120	0	.	0	0	0	0	0	4
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38954426	38954426	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RYR1-100	NM_001042723	exon22	c.G2722T	p.D908Y	CTTGTGGACTTCC	.	88	52	107	0	.	0	0	0	0	0	5
MAP4K1	11184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39103252	39103252	+	Silent	SNP	T	T	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAP4K1-980	NM_007181	exon9	c.A664C	p.R222R	CCTACCTGAGAGG	.	38	24	52	0	.	0	0	0	0	0	5
PAPL	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	39589631	39589631	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001004318	exon4	c.C354A	p.S118R	CTGGAGCCGTCGG	.	28	16	50	0	.	0	0	0	0	0	4
SUPT5H	6829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39959793	39959793	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SUPT5H-94	NM_003169	exon14	c.G1218T	p.E406D	CCTGGAGGTGGTG	.	146	89	223	1	.	0	0	0	0	0	4
SERTAD1	29950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40929113	40929113	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SERTAD1-226	NM_013376	exon2	c.C341T	p.S114F	GCCATGGAGGCTG	.	138	16	95	0	.	0	0	0	0	0	4
PSG9	5678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43766262	43766262	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PSG9-92	NM_002784	exon3	c.C459A	p.S153R	GTTGCTGCTGGAG	.	73	30	118	0	.	0	0	0	0	0	5
MARK4	57787	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	45801154	45801154	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MARK4-782	NM_001199867	exon15	c.G1819T	p.G607W	CCCGCCGGGCGGC	.	76	49	27	2	.	0	0	0	0	0	3
GPR4	2828	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46094390	46094390	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR4-92	NM_005282	exon2	c.G735A	p.L245L	GCGGGACAGCAAG	.	74	41	65	1	.	0	0	0	0	0	3
DACT3	147906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47156013	47156013	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_145056	exon3	c.T403A	p.C135S	CCCCACAGAAGGT	.	39	23	69	0	.	0	0	0	0	0	5
MEIS3	56917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47920493	47920493	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MEIS3-90	NM_001009813	exon2	c.C127G	p.P43A	GCAGGGGCTGGGG	.	112	64	87	0	.	0	0	0	0	0	5
SLC8A2	6543	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	47951225	47951225	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC8A2-94	NM_015063	exon4	c.G1604A	p.S535N	CACTCGCTCACGT	.	63	35	18	0	.	0	0	0	0	0	3
RPL13A	23521	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	49994074	49994074	+	Missense_Mutation	SNP	C	C	G	rs1061320	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RPL13A-90	NM_012423	exon5	c.C295G	p.L99V	GCCGCTCTGGACC	.	201	125	238	0	C|1.000;|0.000	0	0	0	0	0	4
CPT1C	126129	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50209636	50209636	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CPT1C-92	NM_001199752	exon12	c.G1309A	p.A437T	GCCTACGCCCATG	.	83	45	54	1	.	0	0	0	0	0	4
IL4I1	259307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50404912	50404912	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IL4I1-523	NM_172374	exon4	c.C63A	p.P21P	CCTCTGGGGGGCT	.	81	54	60	0	.	0	0	0	0	0	5
KLK7	5650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51480918	51480918	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLK7-650	NM_139277	exon6	c.A636T	p.R212S	GGTACCTCTGCAC	.	99	57	113	0	.	0	0	0	0	0	5
SIGLEC8	27181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51958781	51958781	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SIGLEC8-94	NM_014442	exon4	c.G942T	p.E314D	AGGCAGCTCCAGC	.	152	93	175	1	.	0	0	0	0	0	5
SIGLEC8	27181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51961365	51961365	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SIGLEC8-94	NM_014442	exon1	c.C277G	p.Q93E	GGCCCTGGGTCTC	.	177	108	280	1	.	0	0	0	0	0	4
FPR2	2358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52272299	52272299	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FPR2-501	NM_001005738	exon2	c.C388G	p.P130A	CTGCATCCAGTCT	.	106	66	132	0	.	0	0	0	0	0	5
TTYH1	57348	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	54930366	54930366	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTYH1-90	NM_020659	exon2	c.T191C	p.V64A	TCGCTGTCTACCT	.	57	39	59	0	.	0	0	0	0	0	4
NLRP7	199713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55451819	55451819	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRP7-291	NM_001127255	exon4	c.G368T	p.W123L	TTTCTCCATCCTT	.	40	26	41	0	.	0	0	0	0	0	5
NLRP2	55655	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55481494	55481494	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRP2-120	NM_001174082	exon2	c.C111A	p.H37Q	GGCACACGAGCTC	.	160	90	179	2	.	0	0	0	0	0	3
NLRP4	147945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56369475	56369475	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRP4-216	NM_134444	exon3	c.G716C	p.G239A	AGGGCGGCTTGAA	.	109	64	146	0	.	0	0	0	0	0	5
NLRP8	126205	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56466259	56466259	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRP8-361	NM_176811	exon3	c.G835T	p.D279Y	AAACCCGACCAAC	.	96	58	139	1	.	0	0	0	0	0	3
NLRP8	126205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56466706	56466706	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRP8-361	NM_176811	exon3	c.G1282T	p.V428F	GTGTTCGTCCGGT	.	88	47	126	0	.	0	0	0	0	0	5
NLRP5	126206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56539330	56539330	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRP5-162	NM_153447	exon7	c.G1731C	p.E577D	CTGTGAGGAGTAC	.	143	81	157	1	.	0	0	0	0	0	5
NLRP5	126206	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56539331	56539331	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRP5-162	NM_153447	exon7	c.G1732T	p.E578X	TGTGAGGAGTACT	.	141	79	160	1	.	0	0	0	0	0	4
NLRP5	126206	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	56569695	56569695	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRP5-162	NM_153447	exon14	c.T3389A	p.V1130E	ACCTGGTGCAGAA	.	94	54	94	1	.	0	0	0	0	0	3
PEG3	5178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57334984	57334984	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PEG3-164	NM_001146184	exon4	c.C458A	p.P153Q	TGAGGTGGTGAGG	.	166	92	217	0	.	0	0	0	0	0	5
DUXA	503835	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57672059	57672059	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DUXA-91	NM_001012729	exon2	c.C132A	p.T44T	TTGTTTGGTAGCA	.	54	29	45	1	.	0	0	0	0	0	4
AURKC	6795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	57746327	57746327	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AURKC-1560	NM_001015878	exon6	c.660delG	p.V220fs	AAAGGTGGATTTG	.	137	61	188	0	.	0	0	0	0	0	3
ZNF17	7565	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57932542	57932542	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF17-90	NM_006959	exon3	c.G1682T	p.R561I	GTGGGAGAGTTTT	.	68	44	91	1	.	0	0	0	0	0	4
ZNF530	348327	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58117486	58117486	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF530-90	NM_020880	exon3	c.G593C	p.R198T	ACAGCAGGATTAG	.	95	63	119	1	.	0	0	0	0	0	3
ZNF211	10520	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58152335	58152335	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF211-92	NM_001265597	exon5	c.G676A	p.A226T	ACAGAGGCACCTT	.	119	71	167	1	.	0	0	0	0	0	3
A1BG	1	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58864353	58864353	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	A1BG-90	NM_130786	exon3	c.G281A	p.R94H	CCCGAGCGGCAGC	.	90	25	121	0	.	0	0	0	0	0	5
SNTG2	54221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1094065	1094065	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SNTG2-136	NM_018968	exon4	c.C294G	p.V98V	CCCTGTCGTCATA	.	120	44	149	0	.	0	0	0	0	0	5
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	1926733	1926733	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYT1L-95	NM_015025	exon10	c.C808A	p.Q270K	GTCCTTGGGCTAA	.	237	92	280	1	.	0	0	0	0	0	4
MYT1L	23040	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	1926734	1926734	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYT1L-95	NM_015025	exon10	c.C807A	p.A269A	TCCTTGGGCTAAT	.	239	91	280	2	.	0	0	0	0	0	3
TSSC1	7260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	3197900	3197900	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TSSC1-90	NM_003310	exon7	c.G691A	p.V231M	CCCGCACCAGCTG	.	82	27	77	0	.	0	0	0	0	0	5
TRAPPC12	51112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	3447573	3447573	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_016030	exon6	c.C1441G	p.R481G	TCGATGCGCATCT	.	163	66	194	0	.	0	0	0	0	0	5
SOX11	6664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	5834070	5834070	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SOX11-514	NM_003108	exon1	c.G1217T	p.S406I	AGGGCAGCCTGGG	.	200	45	156	0	.	0	0	0	0	0	5
FAM84A	151354	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	14774305	14774305	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM84A-91	NM_145175	exon2	c.C202A	p.P68T	GAGAGCCCCAGCC	.	73	29	86	0	.	0	0	0	0	0	4
NBAS	51594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	15372587	15372587	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NBAS-94	NM_015909	exon47	c.G6195T	p.L2065L	ACCTTCCAGGACC	.	96	33	85	0	.	0	0	0	0	0	5
FAM49A	81553	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	16743378	16743378	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM49A-226	NM_030797	exon6	c.330delG	p.L110fs	ACAAGTCAGAGAT	.	122	41	113	0	.	0	0	0	0	0	3
NT5C1B-RDH14	100526794	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	18736655	18736655	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001199103	exon9	c.G1755A	p.V585V	CCATGACACCAAA	.	143	28	184	1	.	0	0	0	0	0	4
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21228418	21228418	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	APOB-175	NM_000384	exon26	c.G11322T	p.L3774L	AGTTCTCAGCTTC	.	80	19	81	0	.	0	0	0	0	0	5
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	24110821	24110821	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATAD2B-68	NM_001242338	exon4	c.G453C	p.K151N	ATCTCCCTTCTTT	.	130	24	152	0	.	0	0	0	0	0	5
EFR3B	22979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	25326646	25326646	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_014971	exon4	c.G353C	p.G118A	TCCTCGGCACCAA	.	136	31	124	0	.	0	0	0	0	0	5
SLC30A3	7781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27479291	27479291	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC30A3-90	NM_003459	exon7	c.G981A	p.T327T	AGTGAGCGTAAGG	.	358	68	308	0	.	0	0	0	0	0	5
ALK	238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	29497978	29497978	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALK-3833	NM_004304	exon11	c.C2028A	p.I676I	GTCAAAGATGGGG	.	113	39	155	0	.	0	0	0	0	0	5
ALK	238	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	29754793	29754793	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALK-3833	NM_004304	exon4	c.1142delC	p.P381fs	TTCCCTGGAGTGG	.	88	37	83	0	.	0	0	0	0	0	3
XDH	7498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	31610680	31610680	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	XDH-158	NM_000379	exon8	c.G648T	p.L216F	TACCAGCAACTCT	.	58	13	63	0	.	0	0	0	0	0	4
NLRC4	58484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32477523	32477523	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRC4-276	NM_001199138	exon3	c.G227A	p.W76X	TAGTTCCACTCCT	.	89	40	88	0	.	0	0	0	0	0	5
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	32673862	32673862	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BIRC6-233	NM_016252	exon22	c.4485-1G>T	.	TTTTCAGATATGG	.	34	13	51	0	.	0	0	0	0	0	4
TTC27	55622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32865410	32865410	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTC27-90	NM_017735	exon4	c.A470C	p.K157T	CCTCGAAGCCTAT	.	71	20	76	0	.	0	0	0	0	0	5
RASGRP3	25780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	33752422	33752422	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RASGRP3-661	NM_170672	exon11	c.C1026T	p.S342S	AGTCTCCCTGCAG	.	137	62	136	0	.	0	0	0	0	0	5
FAM98A	25940	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	33810384	33810384	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM98A-91	NM_015475	exon8	c.G1016T	p.G339V	CCTCTCCCTCCTC	.	124	47	145	1	.	0	0	0	0	0	4
QPCT	25797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37599541	37599541	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	QPCT-90	NM_012413	exon6	c.T866C	p.L289S	ACTCTTTGGAGGG	.	189	76	198	0	.	0	0	0	0	0	5
SLC8A1	6546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	40656207	40656207	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC8A1-93	NM_001252624	exon1	c.C1214G	p.P405R	CTAACAGGGTCAT	.	175	41	189	0	.	0	0	0	0	0	5
COX7A2L	9167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	42578413	42578413	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COX7A2L-226	NM_004718	exon3	c.G291T	p.G97G	GATGGTCCCTCCC	.	309	62	299	0	.	0	0	0	0	0	5
STON1-GTF2A1L	286749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	48872174	48872174	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STON1-GTF2A1L-27	NM_001198593	exon7	c.C2418A	p.G806G	CTAGGGCACTTCA	.	33	8	53	0	.	0	0	0	0	0	4
GPR75-ASB3	100302652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	53992682	53992682	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001164165	exon2	c.A142T	p.T48S	AGCACGTGTCCGC	.	100	41	120	0	.	0	0	0	0	0	5
GPR75	10936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54080954	54080954	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR75-92	NM_006794	exon2	c.G940T	p.A314S	CCTTGGCAGTGGA	.	177	63	182	0	.	0	0	0	0	0	5
BMP10	27302	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	69092925	69092925	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BMP10-92	NM_014482	exon2	c.T1113C	p.I371I	CTGGATAATTGCA	.	172	84	206	2	.	0	0	0	0	0	4
ASPRV1	151516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	70188807	70188807	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASPRV1-69	NM_152792	exon1	c.G14T	p.G5V	CTGGCCCCTGGGC	.	66	13	59	0	.	0	0	0	0	0	4
ZNF638	27332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71629179	71629179	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF638-94	NM_014497	exon16	c.G2791T	p.G931C	TTTGGTGGTTTAA	.	112	20	117	0	.	0	0	0	0	0	5
DYSF	8291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71709010	71709010	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DYSF-158	NM_001130984	exon3	c.G149C	p.G50A	TCCAGGGATTTGA	.	46	13	38	0	.	0	0	0	0	0	5
SPR	6697	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73115545	73115545	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPR-92	NM_003124	exon2	c.C407T	p.S136F	TGACTTCCAGCGT	.	230	54	244	1	.	0	0	0	0	0	4
EGR4	1961	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	73519448	73519448	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EGR4-90	NM_001965	exon2	c.G907C	p.A303P	TGAAGGCAGAGAC	.	96	12	52	0	.	0	0	0	0	0	3
DQX1	165545	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74746335	74746335	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DQX1-92	NM_133637	exon11	c.C1829T	p.T610I	TTTCCAGTCCCGT	.	148	73	145	1	.	0	0	0	0	0	3
TACR1	6869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	75425974	75425974	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TACR1-523	NM_001058	exon1	c.C87G	p.A29A	TTGCCAGGCTGGT	.	302	89	322	0	.	0	0	0	0	0	5
LRRTM4	80059	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	77745615	77745615	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRTM4-94	NM_024993	exon3	c.C1380A	p.H460Q	AAGAGAGTGTTGC	.	111	29	111	2	.	0	0	0	0	0	3
LRRTM4	80059	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	77746839	77746839	+	Missense_Mutation	SNP	G	G	C	rs76327576	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRTM4-94	NM_024993	exon3	c.C156G	p.F52L	ATCTGCGAAAGCA	.	137	24	191	0	G|0.996;C|0.004	0	0	0	0	0	3
REG3A	5068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	79385466	79385466	+	Missense_Mutation	SNP	G	G	C	rs11554092	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	REG3A-91	NM_138938	exon3	c.C319G	p.H107D	GGTCATGGAGCCC	.	131	28	163	0	.	0	0	0	0	0	5
CTNNA2	1496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	79878752	79878752	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTNNA2-368	NM_001164883	exon2	c.G70T	p.V24L	CTAACAGTGGAAA	.	91	34	111	0	.	0	0	0	0	0	5
LRRTM1	347730	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	80530470	80530470	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRTM1-73	NM_178839	exon2	c.G475T	p.G159W	GCAGCCCGTGGAA	.	110	51	99	1	.	0	0	0	0	0	4
RETSAT	54884	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	85577993	85577993	+	Missense_Mutation	SNP	C	C	T	rs201722519	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RETSAT-70	NM_017750	exon3	c.G507A	p.M169I	ACTGTACATGGGG	.	167	69	222	1	C|0.999;T|0.001	0	0	0	0	0	3
CAPG	822	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	85625897	85625897	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CAPG-204	NM_001256139	exon7	c.C675A	p.G225G	CTTGGGGCCCAGG	.	162	30	125	2	.	0	0	0	0	0	3
RNF103-CHMP3	100526767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	86769415	86769415	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001198954	exon4	c.G153T	p.K51N	TCTTATCTTCAAT	.	106	31	108	0	.	0	0	0	0	0	5
TEX37	200523	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	88828736	88828736	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_152670	exon4	c.287delG	p.R96fs	CCACGAGGGAGGA	.	293	83	241	0	.	0	0	0	0	0	3
ADRA2B	151	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	96780750	96780750	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADRA2B-229	NM_000682	exon1	c.G1139T	p.C380F	AACCAGCAGAGCA	.	180	78	168	1	.	0	0	0	0	0	3
STARD7	56910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96858161	96858161	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STARD7-68	NM_020151	exon6	c.G789T	p.R263S	TCTGACCCTGACG	.	111	48	96	0	.	0	0	0	0	0	5
INPP4A	3631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	99181141	99181141	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	INPP4A-227	NM_001134224	exon20	c.G2082T	p.R694S	GCTGAGGAACTGC	.	143	30	158	0	.	0	0	0	0	0	5
TBC1D8	11138	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	101670676	101670676	+	Silent	SNP	G	G	A	rs78556703	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBC1D8-25	NM_001102426	exon4	c.C480T	p.V160V	GTAGGTGACCAGC	.	123	20	166	0	G|0.993;A|0.007	0	0	0	0	0	3
RFX8	731220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	102038877	102038877	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145664	exon3	c.A130T	p.R44W	ATCTCCTGAATTC	.	133	37	157	0	.	0	0	0	0	0	5
SLC9A4	389015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	103090435	103090435	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC9A4-92	NM_001011552	exon1	c.G217T	p.V73F	TATGAGGTCACTC	.	95	37	102	0	.	0	0	0	0	0	5
RGPD3	653489	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	107041065	107041065	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RGPD3-23	NM_001144013	exon20	c.C3358T	p.L1120L	GCTTCAGGTTCAT	.	27	12	40	0	.	0	0	0	0	0	4
ST6GAL2	84620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	107423334	107423334	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ST6GAL2-191	NM_032528	exon6	c.G1390T	p.E464X	ACAGCTCCGTCTG	.	157	68	196	0	.	0	0	0	0	0	5
ST6GAL2	84620	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	107459875	107459875	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ST6GAL2-191	NM_032528	exon2	c.G559T	p.E187X	CCTCCTCCAACAC	.	119	31	124	2	.	0	0	0	0	0	3
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	109384075	109384075	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RANBP2-675	NM_006267	exon20	c.A7080C	p.L2360F	GATTTTACAGAAT	.	217	72	213	0	.	0	0	0	0	0	4
IL36G	56300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113736244	113736244	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IL36G-91	NM_019618	exon2	c.G29T	p.G10V	CTGATGGTGGAGG	.	163	75	191	0	.	0	0	0	0	0	5
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	116535388	116535388	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DPP10-142	NM_001178034	exon15	c.1351delC	p.P451fs	TCTTCTCCCAGAG	.	106	44	116	0	.	0	0	0	0	0	3
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	125192069	125192069	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTNAP5-524	NM_130773	exon5	c.G538A	p.V180I	TCAGATGTTGCTG	.	71	28	93	0	.	0	0	0	0	0	5
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	125284869	125284869	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTNAP5-524	NM_130773	exon10	c.C1482A	p.P494P	GTGCCCCGACAAT	.	151	68	160	0	.	0	0	0	0	0	5
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	125405388	125405388	+	Silent	SNP	C	C	A	rs200795882	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTNAP5-524	NM_130773	exon13	c.C1927A	p.R643R	CGAGTGCGGGGCG	.	370	161	422	1	.	0	0	0	0	0	4
MYO7B	4648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128367426	128367426	+	Silent	SNP	C	C	A	rs202235279	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO7B-47	NM_001080527	exon24	c.C3027A	p.A1009A	CCAGGCCGCCCTG	.	163	36	173	0	C|0.999;T|0.000	0	0	0	0	0	5
UGGT1	56886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128890799	128890799	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UGGT1-91	NM_020120	exon14	c.G1462C	p.V488L	CCTGGTGTTATTC	.	117	34	120	0	.	0	0	0	0	0	5
CCDC74B	91409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	130898790	130898790	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC74B-90	NM_207310	exon4	c.G624T	p.E208D	GGGCTCCTCTTCC	.	353	111	349	0	.	0	0	0	0	0	5
SMPD4	55627	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	130911967	130911967	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMPD4-90	NM_017951	exon16	c.G1659T	p.L553L	GGGTGACAGGAAG	.	583	82	607	1	.	0	0	0	0	0	3
AMER3	205147	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	131519737	131519737	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_152698	exon2	c.G92T	p.R31M	CAGCCAGGGAGGG	.	133	65	150	1	.	0	0	0	0	0	3
GPR39	2863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	133174919	133174919	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR39-226	NM_001508	exon1	c.T304A	p.S102T	ACCACGTCCAGCT	.	161	73	180	0	.	0	0	0	0	0	5
NCKAP5	344148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	134275043	134275043	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_207481	exon3	c.G55C	p.D19H	TGCTGTCTAGAGA	.	71	13	75	0	.	0	0	0	0	0	4
MAP3K19	80122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	135738654	135738654	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_025052	exon9	c.C3657G	p.T1219T	ACTGTGGGTGCCA	.	83	18	56	0	.	0	0	0	0	0	5
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	137814534	137814534	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	THSD7B-75	.	.	.	.	TGATGCTCCCATT	.	134	23	186	0	.	0	0	0	0	0	4
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141055390	141055390	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRP1B-311	NM_018557	exon84	c.C12954A	p.D4318E	ACATCTGTCTCCG	.	102	55	204	0	.	0	0	0	0	0	5
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141116494	141116494	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRP1B-311	NM_018557	exon73	c.C11153A	p.T3718K	GGTCTCGTGGATG	.	45	17	83	0	.	0	0	0	0	0	5
LRP1B	53353	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	141128388	141128388	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRP1B-311	NM_018557	exon71	c.G10899A	p.K3633K	ATCTTCCTTACAT	.	83	33	83	1	.	0	0	0	0	0	3
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141245192	141245192	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRP1B-311	NM_018557	exon58	c.C9237T	p.D3079D	CTTAATGTCACTT	.	54	15	50	0	.	0	0	0	0	0	5
KIF5C	3800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	149837965	149837965	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF5C-69	NM_004522	exon14	c.G1459C	p.V487L	AAAGAAGTTCTCC	.	140	51	117	0	.	0	0	0	0	0	5
RIF1	55183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152320981	152320981	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RIF1-300	NM_018151	exon30	c.G4947T	p.V1649V	AAATGTGTGTGAG	.	78	21	107	0	.	0	0	0	0	0	5
RIF1	55183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152321633	152321633	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RIF1-300	NM_018151	exon30	c.G5599A	p.G1867R	TGTTTAGGAGACT	.	47	15	48	0	.	0	0	0	0	0	5
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152521284	152521284	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NEB-145	NM_004543	exon43	c.A5332G	p.T1778A	TCATGGTGATTTG	.	163	76	189	0	.	0	0	0	0	0	5
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152537258	152537258	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NEB-145	NM_004543	exon30	c.G3028T	p.A1010S	TCTGGGCCTGGTT	.	151	54	121	0	.	0	0	0	0	0	5
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152563490	152563490	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NEB-145	NM_004543	exon13	c.G1057T	p.E353X	TCTTTTCATAGTC	.	38	11	41	0	.	0	0	0	0	0	5
CACNB4	785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152727077	152727077	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNB4-24	NM_001145798	exon8	c.G667T	p.V223L	CTAACACCACCGG	.	333	100	251	0	.	0	0	0	0	0	5
RPRM	56475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	154334873	154334873	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RPRM-204	NM_019845	exon1	c.G207T	p.V69V	GAAGACCACGGTG	.	447	163	268	0	.	0	0	0	0	0	5
GALNT13	114805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	154996920	154996920	+	Silent	SNP	G	G	A	rs114793552	bycluster;by1000genomes	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GALNT13-95	NM_052917	exon4	c.G213A	p.Q71Q	TGACCAGGAGAAA	.	147	53	146	0	G|1.000;A|0.000	0	0	0	0	0	5
BAZ2B	29994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160205740	160205740	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BAZ2B-94	NM_013450	exon29	c.G4915C	p.G1639R	CCACACCAGTGGG	.	50	21	41	0	.	0	0	0	0	0	5
SLC4A10	57282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162820704	162820704	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC4A10-229	NM_001178015	exon22	c.C2922A	p.Y974X	TATATACCTAAGG	.	76	24	72	0	.	0	0	0	0	0	5
FAP	2191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	163059625	163059625	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAP-93	NM_004460	exon13	c.G1078A	p.D360N	TGGCATCATAGCT	.	95	29	100	0	.	0	0	0	0	0	5
GRB14	2888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	165353720	165353720	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRB14-420	NM_004490	exon12	c.1294+1G>T	.	GACATACCCATGT	.	172	56	161	0	.	0	0	0	0	0	4
GRB14	2888	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	165353721	165353721	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRB14-420	NM_004490	exon11	c.G1294T	p.A432S	ACATACCCATGTT	.	172	56	163	1	.	0	0	0	0	0	3
SCN3A	6328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	165947786	165947786	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCN3A-141	NM_006922	exon28	c.C4877A	p.A1626D	ATCCTGGCAAGAC	.	240	72	243	0	.	0	0	0	0	0	5
SCN3A	6328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166032795	166032795	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCN3A-141	NM_001081676	exon3	c.C110A	p.P37H	TTTTTGGGCTTCT	.	113	44	92	0	.	0	0	0	0	0	5
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166198817	166198817	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCN2A-142	NM_001040143	exon14	c.G2400A	p.G800G	CACAGGGATCTTC	.	82	14	73	0	.	0	0	0	0	0	4
SCN2A	6326	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166198894	166198894	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCN2A-142	NM_001040143	exon14	c.T2477C	p.F826S	ATATTTTTGATGG	.	136	44	108	1	.	0	0	0	0	0	3
CSRNP3	80034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166535679	166535679	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSRNP3-157	NM_001172173	exon7	c.G1174T	p.G392C	GGAGATGGCTTCG	.	73	28	75	0	.	0	0	0	0	0	5
CSRNP3	80034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166535970	166535970	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSRNP3-157	NM_001172173	exon7	c.G1465A	p.G489S	GCCTATGGTGCCT	.	255	81	224	0	.	0	0	0	0	0	5
GALNT3	2591	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	166626967	166626967	+	Nonsense_Mutation	DEL	T	T	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GALNT3-92	NM_004482	exon2	c.244delA	p.I82X	CTCCTATTTGCAT	.	137	36	119	0	.	0	0	0	0	0	3
TTC21B	79809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166781171	166781171	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTC21B-94	NM_024753	exon12	c.A1404T	p.Q468H	AAGAGGTTGCCCA	.	132	56	133	0	.	0	0	0	0	0	5
SCN9A	6335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	167060640	167060640	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCN9A-181	NM_002977	exon26	c.G4566T	p.M1522I	TTCTACCATCATG	.	101	26	104	0	.	0	0	0	0	0	5
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168100697	168100697	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	XIRP2-104	NM_152381	exon9	c.C2795T	p.T932I	AGTACACACGAAC	.	154	50	174	0	.	0	0	0	0	0	5
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168107417	168107417	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	XIRP2-104	NM_152381	exon9	c.C9515A	p.P3172H	CTTCCCCTTCTCC	.	127	40	111	0	.	0	0	0	0	0	5
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168107715	168107715	+	Nonsense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	XIRP2-104	NM_152381	exon9	c.T9813G	p.Y3271X	TACTTATGTTCAT	.	175	65	137	0	.	0	0	0	0	0	5
CERS6	253782	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169404169	169404169	+	Silent	SNP	G	G	T	rs112858320	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_203463	exon2	c.G234T	p.P78P	TGCTCCGCCCAAT	.	105	45	94	0	G|0.997;A|0.003	0	0	0	0	0	4
G6PC2	57818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169759005	169759005	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	G6PC2-91	NM_021176	exon2	c.A269T	p.Y90F	AGATTTACCCAAA	.	81	26	111	0	.	0	0	0	0	0	5
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170088312	170088312	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRP2-175	NM_004525	exon31	c.C5139A	p.C1713X	AAGCAGGCAGAGA	.	443	151	419	0	.	0	0	0	0	0	5
HOXD13	3239	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	2	176957863	176957863	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HOXD13-658	NM_000523	exon1	c.G245T	p.R82L	CTGAGCGCACGGG	.	47	14	14	0	.	0	0	0	0	0	3
HOXD8	3234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	176996244	176996244	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HOXD8-90	NM_019558	exon2	c.C777A	p.D259E	CAAGGACAAATTT	.	133	47	120	0	.	0	0	0	0	0	5
OSBPL6	114880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179209068	179209068	+	Missense_Mutation	SNP	C	C	A	rs137879178	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OSBPL6-69	NM_001201480	exon12	c.C1043A	p.A348E	GGCTAGCGGCAGC	.	120	38	99	0	C|0.999;T|0.001	0	0	0	0	0	5
FKBP7	51661	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179341878	179341878	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FKBP7-90	NM_001135212	exon2	c.G284T	p.G95V	TCTAGGCCTTTTA	.	110	33	119	1	.	0	0	0	0	0	4
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179406032	179406032	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_001267550	exon350	c.C97772A	p.P32591H	ACGATGGGTTTGG	.	184	68	188	0	.	0	0	0	0	0	5
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179422421	179422421	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_001267550	exon328	c.C87660A	p.I29220I	ATCACTGATGCCA	.	287	92	220	0	.	0	0	0	0	0	5
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179426459	179426459	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_001267550	exon326	c.C84400A	p.R28134S	CATAGCGGTTTTC	.	160	52	192	0	.	0	0	0	0	0	5
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179426490	179426490	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_001267550	exon326	c.T84369A	p.S28123R	ATACTCACTTCCT	.	186	67	211	0	.	0	0	0	0	0	5
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179429435	179429435	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_001267550	exon326	c.G81424T	p.E27142X	CATACTCAAGGCC	.	126	22	132	0	.	0	0	0	0	0	5
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179430005	179430005	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_001267550	exon326	c.G80854A	p.V26952I	CCGTTACGGTGTA	.	289	95	259	0	.	0	0	0	0	0	5
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179437248	179437248	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_001267550	exon326	c.A73611G	p.T24537T	TGTGAGTGTGACA	.	121	44	92	0	.	0	0	0	0	0	5
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179482958	179482958	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_001267550	exon252	c.C47227A	p.P15743T	CTACTGGCTCACC	.	99	33	109	0	.	0	0	0	0	0	5
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179505334	179505334	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_001267550	exon221	c.C40657T	p.P13553S	CAACAGGTTTTGG	.	88	29	106	0	.	0	0	0	0	0	5
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179517194	179517194	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_001267550	exon202	c.C39118T	p.P13040S	TAACAGGTGTGAC	.	94	30	91	0	.	0	0	0	0	0	5
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179560965	179560965	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_001267550	exon114	c.T30834A	p.A10278A	TTCTTCAGCTTTA	.	19	7	22	0	.	0	0	0	0	0	5
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179598048	179598048	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_001267550	exon54	c.G15972A	p.E5324E	GTGCAGCTCAGCT	.	99	31	96	0	.	0	0	0	0	0	5
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179610937	179610937	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_133379	exon46	c.C16190A	p.A5397D	AATACAGCATCTG	.	62	23	69	0	.	0	0	0	0	0	5
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179616717	179616717	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_133379	exon46	c.C10410A	p.D3470E	AAAGGCGTCACGT	.	43	16	64	1	.	0	0	0	0	0	3
NCKAP1	10787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	183817593	183817593	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NCKAP1-92	NM_205842	exon23	c.A2449T	p.M817L	CTTTCATTGCAGG	.	152	46	122	0	.	0	0	0	0	0	5
ZNF804A	91752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	185800948	185800948	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF804A-163	NM_194250	exon4	c.T825C	p.T275T	GAAAACTAACTCT	.	60	19	63	0	.	0	0	0	0	0	5
FSIP2	401024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	186670638	186670638	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FSIP2-90	NM_173651	exon17	c.T16872A	p.N5624K	TGAGAATGTATCA	.	139	56	131	0	.	0	0	0	0	0	5
FAM171B	165215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	187625878	187625878	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM171B-141	NM_177454	exon7	c.T1051C	p.Y351H	ACTGCCTACCACA	.	423	175	377	0	.	0	0	0	0	0	5
PMS1	5378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	190719368	190719368	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PMS1-1396	NM_001128144	exon9	c.G1370C	p.C457S	AAACTTGTTTTAT	.	98	30	101	0	.	0	0	0	0	0	5
MSTN	2660	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	190927030	190927030	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MSTN-650	NM_005259	exon1	c.G293T	p.R98M	TCATCCCTCTGGA	.	208	87	176	1	.	0	0	0	0	0	3
MSTN	2660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	190927320	190927320	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MSTN-650	NM_005259	exon1	c.G3T	p.M1I	TTTTTGCATGATT	.	36	13	31	0	.	0	0	0	0	0	5
TMEFF2	23671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	192863915	192863915	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEFF2-524	NM_016192	exon6	c.T556A	p.C186S	GAGAACAGTCAAT	.	97	34	80	0	.	0	0	0	0	0	5
TMEFF2	23671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	193044393	193044393	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEFF2-524	NM_016192	exon5	c.439+1G>T	.	CTCCTACCTCCAT	.	151	60	207	0	.	0	0	0	0	0	5
DNAH7	56171	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196737099	196737099	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH7-102	NM_018897	exon40	c.A6508T	p.T2170S	CTGGAGTAGGCAA	.	168	54	128	1	.	0	0	0	0	0	4
CCDC150	284992	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197511082	197511082	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001080539	exon2	c.A30G	p.T10T	AACTACAGTGTCC	.	256	89	214	1	.	0	0	0	0	0	4
PLCL1	5334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198950268	198950268	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLCL1-228	NM_006226	exon2	c.C2027A	p.P676Q	CGGGTCCAATGAT	.	78	20	93	0	.	0	0	0	0	0	5
NBEAL1	65065	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	204039945	204039945	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NBEAL1-92	NM_001114132	exon41	c.G6312T	p.G2104G	TGCGGGGGTCATG	.	230	75	181	1	.	0	0	0	0	0	4
ZDBF2	57683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207169902	207169902	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZDBF2-3	NM_020923	exon5	c.G650T	p.S217I	CAGTTAGCAAATG	.	117	36	129	0	.	0	0	0	0	0	5
ZDBF2	57683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	207170268	207170268	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZDBF2-3	NM_020923	exon5	c.G1016A	p.C339Y	TGGATTGTACCCA	.	46	13	29	0	.	0	0	0	0	0	4
ZDBF2	57683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207174022	207174022	+	Silent	SNP	T	T	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZDBF2-3	NM_020923	exon5	c.T4770G	p.T1590T	CTCTACTCCCTCA	.	46	18	44	0	.	0	0	0	0	0	5
ZDBF2	57683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207174333	207174333	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZDBF2-3	NM_020923	exon5	c.G5081T	p.R1694I	ATCCAAGAAATGC	.	69	28	50	0	.	0	0	0	0	0	5
ADAM23	8745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207454220	207454220	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAM23-228	NM_003812	exon21	c.G1940T	p.W647L	ACCGGTGGATTCA	.	104	38	81	0	.	0	0	0	0	0	5
DYTN	391475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207527859	207527859	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DYTN-23	NM_001093730	exon11	c.C1401A	p.S467R	TGTTTGGCTTTGT	.	307	100	264	0	.	0	0	0	0	0	5
FASTKD2	22868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207655353	207655353	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FASTKD2-118	NM_001136193	exon11	c.A1956G	p.R652R	CCCCAGAGGATTC	.	59	13	63	0	.	0	0	0	0	0	5
CRYGC	1420	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	208992943	208992943	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRYGC-90	NM_020989	exon3	c.T509C	p.V170A	TCCACCACTCTCC	.	102	40	93	1	.	0	0	0	0	0	4
CPS1	1373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	211457659	211457659	+	Silent	SNP	C	C	G	rs148322072	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CPS1-162	NM_001122633	exon12	c.C1161G	p.T387T	GGTCACCCCGGGG	.	48	21	61	0	C|1.000;T|0.000	0	0	0	0	0	5
CPS1	1373	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	211512667	211512667	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CPS1-162	NM_001122633	exon27	c.G3240T	p.K1080N	TGTCAAGATCATG	.	475	148	459	2	.	0	0	0	0	0	4
CPS1	1373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	211527846	211527846	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CPS1-162	NM_001122633	exon34	c.3946-1G>T	.	CCAACAGGCTCCC	.	41	12	33	0	.	0	0	0	0	0	4
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	212285242	212285242	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ERBB4-1461	NM_001042599	exon25	c.A3059T	p.E1020V	TACTCCTCAGCAT	.	76	38	95	0	.	0	0	0	0	0	5
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	212578300	212578300	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ERBB4-1461	NM_001042599	exon8	c.G957T	p.G319G	TTTAATCCCATTT	.	99	38	63	0	.	0	0	0	0	0	5
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	212589908	212589908	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ERBB4-1461	NM_001042599	exon6	c.G634T	p.V212L	CACACACCGTCCT	.	189	81	184	0	.	0	0	0	0	0	5
ERBB4	2066	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	212812187	212812187	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ERBB4-1461	NM_001042599	exon3	c.G389T	p.G130V	TGAAGTCCAAAGT	.	116	44	90	1	.	0	0	0	0	0	4
PRKAG3	53632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219695074	219695074	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRKAG3-659	NM_017431	exon4	c.C260T	p.T87I	AGCCCGGTGGACT	.	203	63	153	0	.	0	0	0	0	0	5
WNT10A	80326	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219746981	219746981	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WNT10A-523	NM_025216	exon2	c.A212G	p.Q71R	GGCGGCAGATGGA	.	312	112	248	1	.	0	0	0	0	0	4
ANKZF1	55139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220098512	220098512	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKZF1-92	NM_001042410	exon8	c.C895G	p.P299A	CGTGCTCCCCGCT	.	115	23	100	0	.	0	0	0	0	0	5
PTPRN	5798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	220159708	220159708	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPRN-229	NM_002846	exon19	c.G2664A	p.L888L	GAAGTCCAGCAGG	.	109	40	28	0	.	0	0	0	0	0	4
PTPRN	5798	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220172174	220172174	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPRN-229	NM_002846	exon3	c.T272G	p.M91R	TGGGACATGAGTT	.	57	22	55	1	.	0	0	0	0	0	4
CHPF	79586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220405282	220405282	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHPF-90	NM_024536	exon4	c.G1151T	p.R384L	GCCGGGCGGGATG	.	191	61	109	0	.	0	0	0	0	0	5
OBSL1	23363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220419228	220419228	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OBSL1-71	NM_015311	exon15	c.C4844A	p.S1615Y	CGCAGGGAATCCG	.	384	130	318	1	.	0	0	0	0	0	5
SLC4A3	6508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220493241	220493241	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC4A3-157	NM_005070	exon3	c.G166T	p.A56S	CCCCCGGCCTGGG	.	467	161	316	0	.	0	0	0	0	0	5
SCG2	7857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	224463929	224463929	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCG2-69	NM_003469	exon2	c.G72A	p.G24G	TTCAGCCCCAGAG	.	177	63	154	0	.	0	0	0	0	0	5
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228858308	228858308	+	Missense_Mutation	SNP	G	G	T	rs192502309	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPHKAP-167	NM_001142644	exon9	c.C4663A	p.L1555I	TGCCAAGACTGCT	.	200	69	163	0	G|0.999;T|0.001	0	0	0	0	0	5
SPHKAP	80309	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228882596	228882596	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPHKAP-167	NM_030623	exon7	c.G2974T	p.V992L	TCCTCACAGCGGT	.	105	34	103	1	.	0	0	0	0	0	4
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228883407	228883407	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPHKAP-167	NM_030623	exon7	c.C2163G	p.F721L	CTTCTTGAACGTG	.	118	37	97	0	.	0	0	0	0	0	5
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228883709	228883709	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPHKAP-167	NM_030623	exon7	c.A1861T	p.K621X	CCTCCTTGAGCAA	.	157	57	140	0	.	0	0	0	0	0	5
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228883760	228883760	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPHKAP-167	NM_030623	exon7	c.G1810C	p.G604R	CTAAACCACAAAG	.	102	38	111	0	.	0	0	0	0	0	5
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228884194	228884194	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPHKAP-167	NM_030623	exon7	c.G1376A	p.S459N	GCATCACTGCCAT	.	89	35	69	0	.	0	0	0	0	0	5
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228884765	228884765	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPHKAP-167	NM_030623	exon7	c.G805T	p.E269X	TGTCTTCCAAAGC	.	109	34	95	0	.	0	0	0	0	0	5
PID1	55022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	229890643	229890643	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PID1-94	NM_017933	exon4	c.A452T	p.E151V	GTGGCCTCCCCTT	.	254	80	219	0	.	0	0	0	0	0	5
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230723756	230723756	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRIP12-572	NM_004238	exon3	c.G633C	p.S211S	GGAGGCCGAGGCT	.	88	27	72	0	.	0	0	0	0	0	5
C2orf72	257407	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	231906104	231906104	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001144994	exon2	c.728delC	p.A243fs	TTGCTGCCTGCAG	.	108	35	73	0	.	0	0	0	0	0	3
ALPI	248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	233322794	233322794	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALPI-90	NM_001631	exon8	c.C943A	p.L315M	GCTGCCCTGCGCC	.	505	180	339	1	.	0	0	0	0	0	4
SAG	6295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234229340	234229340	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SAG-23	NM_000541	exon5	c.C246A	p.T82T	CTTGACCTTCCGC	.	149	55	118	0	.	0	0	0	0	0	5
UGT1A5	54579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234621950	234621950	+	Missense_Mutation	SNP	C	C	A	rs200200998	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UGT1A5-3	NM_019078	exon1	c.C313A	p.H105N	ACAGAACATCTTC	.	116	36	128	0	C|1.000;T|0.000	0	0	0	0	0	5
COL6A3	1293	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	238280884	238280884	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL6A3-526	NM_004369	exon9	c.T3776A	p.V1259D	TAGTCAACCAGCC	.	110	55	120	1	.	0	0	0	0	0	3
NDUFA10	4705	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	240951052	240951052	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NDUFA10-514	NM_004544	exon6	c.C731G	p.T244S	AGAAAGGTTTTCT	.	92	31	125	1	.	0	0	0	0	0	3
OTOS	150677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241078654	241078654	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OTOS-68	NM_148961	exon4	c.G203A	p.R68Q	AAGGTTCGGGCCA	.	229	31	227	0	.	0	0	0	0	0	5
KIF1A	547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241658532	241658532	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF1A-91	NM_001244008	exon47	c.G5105T	p.R1702L	TAGGGGCGCCGCA	.	269	104	164	0	.	0	0	0	0	0	5
AGXT	189	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241812461	241812461	+	Missense_Mutation	SNP	G	G	T	rs34664134	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AGXT-90	NM_000030	exon5	c.G590T	p.R197L	TGGACCGGCAAGG	.	141	46	107	0	G|0.993;A|0.007	0	0	0	0	0	4
PASK	23178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242066763	242066763	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PASK-536	NM_015148	exon10	c.G1567T	p.E523X	GGCTCTCTATTGC	.	106	41	87	0	.	0	0	0	0	0	5
HDLBP	3069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242192402	242192402	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HDLBP-290	NM_005336	exon11	c.A1342T	p.R448W	GGTGCCTGTGGAA	.	220	68	192	0	.	0	0	0	0	0	5
ATG4B	23192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242606247	242606247	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_178326	exon8	c.G726T	p.T242T	GGAGACGCTGAAG	.	63	22	48	0	.	0	0	0	0	0	5
SIRPG	55423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1610940	1610940	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SIRPG-23	NM_018556	exon5	c.C1094G	p.S365C	GTAAGGGATGATG	.	40	12	78	0	.	0	0	0	0	0	5
TGM6	343641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	2398147	2398147	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TGM6-94	NM_198994	exon10	c.A1606G	p.I536V	GCCACCATCCTCT	.	40	11	26	0	.	0	0	0	0	0	4
TMC2	117532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2542507	2542507	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMC2-93	NM_080751	exon4	c.A405T	p.S135S	CAGGTCATCCTCC	.	120	26	166	0	.	0	0	0	0	0	5
SLC4A11	83959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3218585	3218585	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC4A11-91	NM_001174090	exon1	c.T126A	p.A42A	CGCTGCAGCGAGA	.	54	17	88	0	.	0	0	0	0	0	5
ATRN	8455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3624815	3624815	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATRN-154	NM_139321	exon28	c.C4065T	p.P1355P	CAAACCCATTGCA	.	78	25	127	0	.	0	0	0	0	0	5
PROKR2	128674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	5283022	5283022	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PROKR2-94	NM_144773	exon2	c.G819T	p.T273T	CAGGACCGTCTTC	.	132	42	167	0	.	0	0	0	0	0	5
CHGB	1114	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	5903995	5903995	+	Missense_Mutation	SNP	G	G	T	rs200027232	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHGB-96	NM_001819	exon4	c.G1205T	p.G402V	GATATGGTGAAGA	.	21	5	51	0	G|0.999;A|0.001	0	0	0	0	0	3
HAO1	54363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	7875859	7875859	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HAO1-93	NM_017545	exon5	c.G734T	p.R245M	GCCTCCCTGGCAT	.	68	17	88	0	.	0	0	0	0	0	5
PLCB1	23236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	8770166	8770166	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLCB1-297	NM_015192	exon30	c.G3280T	p.G1094C	TTTAGGGAGAAGA	.	91	35	155	0	.	0	0	0	0	0	5
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9417684	9417684	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLCB4-274	NM_001172646	exon29	c.A2649G	p.K883K	TTCCAAAAATGAC	.	85	24	133	0	.	0	0	0	0	0	5
PAK7	57144	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	9543657	9543657	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAK7-1434	NM_177990	exon6	c.G1497T	p.R499R	GTAATCCCGCATG	.	107	32	124	1	.	0	0	0	0	0	3
ESF1	51575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	13752040	13752040	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ESF1-91	NM_001276380	exon6	c.G1340A	p.S447N	ATTTTACTAGCTG	.	71	14	90	0	.	0	0	0	0	0	4
RRBP1	6238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	17617312	17617312	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RRBP1-92	NM_004587	exon6	c.G948T	p.V316V	CCGGGCCACCAGC	.	81	20	89	0	.	0	0	0	0	0	5
DZANK1	55184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	18434400	18434400	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001099407	exon5	c.G450T	p.W150C	AACATTCCAGCTG	.	48	11	73	0	.	0	0	0	0	0	5
C20orf78	100128496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	18790706	18790706	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C20orf78-71	NM_001242671	exon3	c.A170T	p.E57V	CTGTCTTCTGAGG	.	103	31	164	0	.	0	0	0	0	0	5
RALGAPA2	57186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20501596	20501596	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RALGAPA2-24	NM_020343	exon31	c.C4049T	p.S1350L	TCTGCTGATGAAT	.	95	24	130	0	.	0	0	0	0	0	5
FOXA2	3170	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	22563160	22563160	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FOXA2-228	NM_021784	exon2	c.C720T	p.T240T	GTGCAGGGTCCAG	.	88	48	101	0	.	0	0	0	0	0	4
CD93	22918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23065618	23065618	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CD93-153	NM_012072	exon1	c.T1212C	p.D404D	TGAGCCATCTGTG	.	224	101	237	0	.	0	0	0	0	0	5
CST8	10047	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23472348	23472348	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CST8-90	NM_005492	exon2	c.C44T	p.P15L	CCATTCCCCTGGC	.	147	73	121	1	.	0	0	0	0	0	4
CST8	10047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23472361	23472361	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CST8-90	NM_005492	exon2	c.G57T	p.V19V	CCTGGTGGCCAGG	.	164	43	129	0	.	0	0	0	0	0	5
CST9	128822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23584212	23584212	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CST9-91	NM_001008693	exon2	c.T415C	p.C139R	CCATGCAGCATCC	.	216	45	231	0	.	0	0	0	0	0	5
BPIFB6	128859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	31631832	31631832	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_174897	exon15	c.G1341T	p.M447I	CCTGATGCTGGAC	.	88	17	88	0	.	0	0	0	0	0	4
CDK5RAP1	51654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	31967333	31967333	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDK5RAP1-230	NM_016408	exon8	c.C1041G	p.V347V	TCTGGAGACCTGA	.	131	17	143	0	.	0	0	0	0	0	4
PIGU	128869	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	33169461	33169461	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIGU-226	NM_080476	exon10	c.C942A	p.F314L	CATGAAGAAGATG	.	134	9	133	0	.	0	0	0	0	0	3
ACSS2	55902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33508448	33508448	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACSS2-226	NM_001076552	exon10	c.G1118T	p.G373V	ACATTGGTTGGAT	.	105	42	124	0	.	0	0	0	0	0	5
CEP250	11190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34090551	34090551	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CEP250-27	NM_007186	exon30	c.G4354T	p.E1452X	CAACGGGAAATGC	.	149	77	194	0	.	0	0	0	0	0	5
RBM12	10137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34242103	34242103	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBM12-93	NM_001198840	exon2	c.A1142T	p.Q381L	ACCCACTGTCTTT	.	90	17	101	0	.	0	0	0	0	0	5
PHF20	51230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34535448	34535448	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHF20-515	NM_016436	exon18	c.C2938T	p.P980S	GAGCCCCCTGAGC	.	112	50	90	0	.	0	0	0	0	0	5
CNBD2	140894	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	34568458	34568458	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_080834	exon4	c.C321T	p.V107V	GGCCGTCTGTAAC	.	193	46	162	1	.	0	0	0	0	0	3
PPP1R16B	26051	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	37531363	37531363	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPP1R16B-228	NM_001172735	exon6	c.G624A	p.M208I	GCAGATGATTGCG	.	217	91	173	1	.	0	0	0	0	0	4
MAFB	9935	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	39316536	39316536	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAFB-846	NM_005461	exon1	c.C955G	p.P319A	ACTCGGGAGAGGA	.	59	21	59	0	.	0	0	0	0	0	4
PTPRT	11122	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	40980823	40980823	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPRT-664	NM_007050	exon10	c.G1663T	p.G555C	ACAGACCCACAAA	.	154	66	145	2	.	0	0	0	0	0	3
MYBL2	4605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	42315672	42315672	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYBL2-415	NM_002466	exon5	c.G460C	p.G154R	GTGCTGGGCAACC	.	118	57	87	0	.	0	0	0	0	0	5
TOX2	84969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	42683068	42683068	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TOX2-91	NM_001098798	exon5	c.C808T	p.Q270X	GACACTCAGGCCG	.	174	75	170	0	.	0	0	0	0	0	5
RIMS4	140730	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43384921	43384921	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RIMS4-94	NM_001205317	exon6	c.G667C	p.E223Q	CCAGCTCCTCCAG	.	139	63	147	0	.	0	0	0	0	0	4
ZNF334	55713	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45130422	45130422	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF334-92	NM_018102	exon5	c.G1556T	p.C519F	TCACTACACTCAT	.	127	27	134	1	.	0	0	0	0	0	4
SLC2A10	81031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45354555	45354555	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC2A10-91	NM_030777	exon2	c.G880T	p.A294S	GACCGTGCAGGCC	.	167	39	149	0	.	0	0	0	0	0	5
EYA2	2139	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45700881	45700881	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EYA2-523	NM_172110	exon6	c.G473T	p.S158I	TCGGGAGTGTGCA	.	163	29	137	1	.	0	0	0	0	0	4
EYA2	2139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45771748	45771748	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EYA2-523	NM_172110	exon10	c.C939A	p.F313L	GATCTTCAACCTT	.	137	65	151	0	.	0	0	0	0	0	5
ZMYND8	23613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45976616	45976616	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZMYND8-252	NM_183048	exon2	c.C69G	p.I23M	AGTAGAGATATCC	.	54	15	53	0	.	0	0	0	0	0	5
SULF2	55959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	46311853	46311853	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SULF2-293	NM_001161841	exon7	c.G949T	p.D317Y	CGTGGTCGGCGGT	.	279	55	212	0	.	0	0	0	0	0	5
SULF2	55959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	46385940	46385940	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SULF2-293	NM_001161841	exon2	c.G168T	p.V56V	CAGCTCCACATCC	.	73	31	62	0	.	0	0	0	0	0	5
PREX1	57580	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47262418	47262418	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PREX1-231	NM_020820	exon26	c.C3483G	p.H1161Q	GGTGTCGTGGCCT	.	154	65	188	1	.	0	0	0	0	0	4
PREX1	57580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47317415	47317415	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PREX1-231	NM_020820	exon7	c.C793A	p.L265I	CTGTGAGGTTGGA	.	127	63	102	0	.	0	0	0	0	0	5
B4GALT5	9334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	48257052	48257052	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	B4GALT5-91	NM_004776	exon6	c.A757T	p.R253W	AATGCCTCGGCAT	.	55	27	50	0	.	0	0	0	0	0	5
SALL4	57167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	50408431	50408431	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SALL4-92	NM_020436	exon2	c.C591A	p.S197R	ATCCGCGCTCCGC	.	88	15	88	0	.	0	0	0	0	0	4
PCK1	5105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	56139391	56139391	+	Silent	SNP	G	G	T	rs200264001	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCK1-227	NM_002591	exon7	c.G1128T	p.P376P	TGAGCCGCTAGCT	.	268	54	277	0	G|0.999;A|0.000	0	0	0	0	0	5
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	57428374	57428374	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GNAS-4767	NM_080425	exon1	c.54delC	p.I18fs	CGATATCCCCCCT	.	111	51	147	0	.	0	0	0	0	0	3
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57768917	57768917	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF831-126	NM_178457	exon1	c.C2843A	p.A948E	CTCAGGCAGAGAC	.	68	34	74	0	.	0	0	0	0	0	5
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57769069	57769069	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF831-126	NM_178457	exon1	c.G2995T	p.G999C	TCCCCAGGTGAGG	.	34	13	32	0	.	0	0	0	0	0	5
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57769218	57769218	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF831-126	NM_178457	exon1	c.C3144A	p.P1048P	GGCTCCCAGGGAG	.	93	20	66	0	.	0	0	0	0	0	5
ZNF831	128611	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	57828115	57828115	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF831-126	NM_178457	exon4	c.C4110A	p.D1370E	AGGTGACTGCAGA	.	187	89	146	1	.	0	0	0	0	0	3
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57829495	57829495	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF831-126	NM_178457	exon5	c.T4731A	p.A1577A	TTCAGCTAGTTCA	.	211	86	229	0	.	0	0	0	0	0	5
PHACTR3	116154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	58349336	58349336	+	Missense_Mutation	SNP	G	G	T	rs143127476	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHACTR3-93	NM_080672	exon7	c.G965T	p.R322L	AGAAGCGGCTGGA	.	117	27	124	0	G|0.999;A|0.000	0	0	0	0	0	5
FAM217B	63939	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	58519072	58519072	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_022106	exon4	c.A74C	p.Q25P	AATCCCAAGTACC	.	134	25	191	2	.	0	0	0	0	0	3
CDH4	1002	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	60448951	60448951	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH4-282	NM_001794	exon7	c.C1045A	p.R349R	CTGGACCGAGAGG	.	150	40	102	1	.	0	0	0	0	0	3
TAF4	6874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60581714	60581714	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAF4-93	NM_003185	exon7	c.C2075T	p.A692V	GTGAGCGCAGTGG	.	175	42	19	0	.	0	0	0	0	0	5
LAMA5	3911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60913072	60913072	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LAMA5-93	NM_005560	exon14	c.G1891T	p.A631S	GCTCACCTTGGCA	.	236	119	116	0	.	0	0	0	0	0	5
OGFR	11054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61444261	61444261	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OGFR-68	NM_007346	exon7	c.G1294T	p.G432C	GAAGTGGGCGGTC	.	123	32	56	0	.	0	0	0	0	0	5
DIDO1	11083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	61512594	61512594	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DIDO1-96	NM_001193369	exon16	c.G4714T	p.E1572X	CCCCCTCACCGGT	.	42	9	18	0	.	0	0	0	0	0	3
YTHDF1	54915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61834292	61834292	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	YTHDF1-92	NM_017798	exon4	c.A1000G	p.R334G	CGTTTCTGTTGCG	.	72	21	62	0	.	0	0	0	0	0	5
BIRC7	79444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61869820	61869820	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BIRC7-659	NM_139317	exon3	c.G522T	p.L174L	GCTGCTGGGCTCC	.	88	42	72	0	.	0	0	0	0	0	5
ARFGAP1	55738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61919061	61919061	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARFGAP1-91	NM_175609	exon14	c.G1081A	p.D361N	TGCGCGGACACCT	.	167	39	125	0	.	0	0	0	0	0	5
TPTE	7179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	10920084	10920084	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TPTE-344	NM_199261	exon19	c.G1170T	p.Q390H	ACTTACCTGAGAA	.	19	7	36	0	.	0	0	0	0	0	4
TPTE	7179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	10944670	10944670	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TPTE-344	NM_199261	exon11	c.C564A	p.P188P	ATACCTGGGAATA	.	304	29	359	0	.	0	0	0	0	0	3
BAGE2	85319	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	11058188	11058188	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_182482	exon3	c.G252T	p.Q84H	TGTGTTCTGGACA	.	220	22	249	0	.	0	0	0	0	0	3
GRIK1	2897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	31311813	31311813	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRIK1-137	NM_175611	exon1	c.G6C	p.E2D	GCCGTGCTCCATC	.	99	69	79	0	.	0	0	0	0	0	5
KRTAP24-1	643803	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	31655215	31655215	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRTAP24-1-68	NM_001085455	exon1	c.T36A	p.P12P	GACACCAGGATAG	.	276	181	219	2	.	0	0	0	0	0	3
KRTAP13-3	337960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	31797786	31797786	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRTAP13-3-92	NM_181622	exon1	c.C445G	p.P149A	AGATTGGATGGCA	.	111	83	116	0	.	0	0	0	0	0	5
DSCR6	53820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	38385914	38385914	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DSCR6-153	NM_018962	exon3	c.G235T	p.V79L	CATCCTGTAAGGT	.	109	81	85	0	.	0	0	0	0	0	5
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	41719682	41719682	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DSCAM-101	NM_001271534	exon6	c.G1125T	p.M375I	TTTGACCATGTGA	.	152	115	158	0	.	0	0	0	0	0	5
TRPM2	7226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45795727	45795727	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPM2-92	NM_003307	exon6	c.C783T	p.P261P	CTTCCCCGCCGAG	.	161	120	133	0	.	0	0	0	0	0	5
TRPM2	7226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45845667	45845667	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPM2-92	NM_003307	exon25	c.C3752A	p.P1251H	ACTGCCCTGTCAC	.	259	171	108	0	.	0	0	0	0	0	5
KRTAP10-9	386676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46047799	46047799	+	Silent	SNP	T	T	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_198690	exon1	c.T711G	p.P237P	CCGCCCTGTGTGC	.	189	144	97	0	.	0	0	0	0	0	5
COL6A1	1291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47423043	47423043	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL6A1-91	NM_001848	exon34	c.G2444T	p.C815F	AGAAGTGTCCAGA	.	184	125	121	0	.	0	0	0	0	0	5
CLTCL1	8218	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19220842	19220842	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLTCL1-230	NM_001835	exon10	c.1369-1G>T	.	CTCCAGCTGTGGT	.	89	68	81	1	.	0	0	0	0	0	4
PRAME	23532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	22890729	22890729	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRAME-515	NM_206954	exon6	c.C1290A	p.L430L	CCCGATGAGGTGC	.	70	40	50	0	.	0	0	0	0	0	5
MYO18B	84700	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	26422797	26422797	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO18B-142	NM_032608	exon43	c.C6857A	p.A2286D	CTGGGGCCTCCAC	.	101	68	130	1	.	0	0	0	0	0	3
SEZ6L	23544	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	26761520	26761520	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEZ6L-95	NM_021115	exon13	c.C2782G	p.P928A	CCCCTGCCCGTGT	.	117	81	93	1	.	0	0	0	0	0	3
TTC28	23331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	28559432	28559432	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145418	exon6	c.G1089A	p.V363V	AATATACACAGCT	.	125	74	128	0	.	0	0	0	0	0	5
AP1B1	162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29745300	29745300	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AP1B1-92	NM_001127	exon11	c.G1344T	p.M448I	CCAGATCATGGCA	.	73	47	103	0	.	0	0	0	0	0	5
BPIFC	254240	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	32828365	32828365	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_174932	exon10	c.G1144C	p.D382H	CGAAGTCCATGGA	.	208	152	173	2	.	0	0	0	0	0	3
LARGE	9215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	33712075	33712075	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LARGE-92	NM_004737	exon12	c.G1447T	p.D483Y	ACCTGTCCATGGA	.	187	127	186	1	.	0	0	0	0	0	5
TMPRSS6	164656	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	37465237	37465237	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMPRSS6-292	NM_153609	exon16	c.G2016A	p.L672L	GAGCTGCAGCAGC	.	139	78	57	0	.	0	0	0	0	0	4
SH3BP1	23616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38043305	38043305	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SH3BP1-90	NM_018957	exon12	c.A1068G	p.P356P	GCTGCCAGAGCCT	.	98	41	100	0	.	0	0	0	0	0	5
FAM83F	113828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40417793	40417793	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM83F-153	NM_138435	exon4	c.G1279A	p.A427T	GGAGAAGCGGCCC	.	154	37	88	0	.	0	0	0	0	0	5
XPNPEP3	63929	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	41278040	41278040	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	XPNPEP3-68	NM_022098	exon3	c.A448T	p.I150L	AAAGCCATACTTT	.	108	49	127	1	.	0	0	0	0	0	3
ZC3H7B	23264	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41723297	41723297	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZC3H7B-90	NM_017590	exon5	c.G373C	p.A125P	GCACGCGCTCTCA	.	135	34	96	1	.	0	0	0	0	0	4
C22orf46	79640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42089695	42089695	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001142964	exon2	c.C445T	p.P149S	TCTGAGCCCATCT	.	68	14	69	0	.	0	0	0	0	0	5
MEI1	150365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	42114182	42114182	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MEI1-70	NM_152513	exon6	c.G637T	p.E213X	GCAGCTGAGATGC	.	94	16	86	0	.	0	0	0	0	0	4
MEI1	150365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42114184	42114184	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MEI1-70	NM_152513	exon6	c.G639A	p.E213E	AGCTGAGATGCTT	.	96	17	86	0	.	0	0	0	0	0	5
NFAM1	150372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42781209	42781209	+	Missense_Mutation	SNP	G	G	T	rs200124807	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NFAM1-90	NM_145912	exon6	c.C771A	p.F257L	ATCTTCGAATCTA	.	63	32	76	0	G|1.000;A|0.000	0	0	0	0	0	5
SCUBE1	80274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	43610215	43610215	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCUBE1-93	NM_173050	exon16	c.A1934T	p.Q645L	ACACACTGGCCGA	.	211	94	194	0	.	0	0	0	0	0	5
EFCAB6	64800	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	44151684	44151684	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EFCAB6-97	NM_022785	exon6	c.C469T	p.R157C	ATGTGCGGCAGCA	.	33	17	48	0	.	0	0	0	0	0	4
EFCAB6	64800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	44161245	44161245	+	Missense_Mutation	SNP	G	G	A	rs139001785	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EFCAB6-97	NM_022785	exon5	c.C380T	p.P127L	AGGTACGGTACAG	.	189	73	203	0	G|0.999;A|0.000	0	0	0	0	0	5
EFCAB6	64800	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	44161247	44161247	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EFCAB6-97	NM_022785	exon5	c.A378T	p.V126V	GTACGGTACAGTA	.	189	74	201	1	.	0	0	0	0	0	4
PARVG	64098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	44602230	44602230	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PARVG-90	NM_001137606	exon14	c.G920T	p.R307M	CACTGAGGGTGCT	.	278	117	182	0	.	0	0	0	0	0	5
KIAA0930	23313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	45598876	45598876	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA0930-90	NM_015264	exon7	c.G862A	p.E288K	CCCGCTCGTGCAT	.	96	11	81	0	.	0	0	0	0	0	4
UPK3A	7380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45691536	45691536	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UPK3A-90	NM_006953	exon6	c.C800A	p.T267K	CCTACACGTCCGT	.	72	25	55	0	.	0	0	0	0	0	5
RIBC2	26150	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45822021	45822021	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RIBC2-90	.	.	.	.	AGATCCGCCTAGT	.	66	31	77	0	.	0	0	0	0	0	4
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46835306	46835306	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CELSR1-525	NM_014246	exon3	c.G4186A	p.E1396K	AGTGCTCTCCTGG	.	84	18	54	0	.	0	0	0	0	0	5
PLXNB2	23654	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50714236	50714236	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLXNB2-211	NM_012401	exon37	c.T5414A	p.I1805N	TTGATGATCTGAG	.	119	51	87	1	.	0	0	0	0	0	3
ACR	49	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	51183082	51183082	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACR-90	NM_001097	exon5	c.G713A	p.G238E	GACAGGGAGACAG	.	232	55	186	0	.	0	0	0	0	0	5
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	361487	361487	+	Missense_Mutation	SNP	C	C	G	rs139673243	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHL1-583	NM_001253388	exon1	c.C28G	p.L10V	AGAGGACTAATCG	.	30	19	43	0	C|1.000;G|0.000	0	0	0	0	0	5
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	4693830	4693830	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITPR1-710	NM_001099952	exon11	c.G879T	p.R293R	ATGTCGGGGCGGA	.	163	110	138	0	.	0	0	0	0	0	5
GRM7	2917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	6903300	6903300	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRM7-526	NM_000844	exon1	c.G225T	p.G75G	AAACGGGATCCAC	.	246	165	173	1	.	0	0	0	0	0	5
SETD5	55209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9483874	9483874	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SETD5-70	NM_001080517	exon10	c.G1022T	p.R341L	ATGCCCGTACTTT	.	65	41	68	0	.	0	0	0	0	0	5
ARPC4	10093	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9839433	9839433	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARPC4-90	NM_001198780	exon2	c.C151A	p.R51R	GTGGAACGACACA	.	87	56	76	1	.	0	0	0	0	0	4
WNT7A	7476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	13896295	13896295	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WNT7A-948	NM_004625	exon3	c.C304A	p.R102R	CCTCCCGGCTCCC	.	62	45	52	0	.	0	0	0	0	0	5
ZCWPW2	152098	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	28454817	28454817	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZCWPW2-24	NM_001040432	exon2	c.G258T	p.Q86H	TCATCAGTGTGGA	.	130	98	124	2	.	0	0	0	0	0	3
TGFBR2	7048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	30713626	30713626	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TGFBR2-1698	NM_001024847	exon5	c.G1026T	p.L342F	GGAGTTGGGGAAA	.	113	74	160	1	.	0	0	0	0	0	4
SCN11A	11280	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38936044	38936044	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCN11A-99	NM_014139	exon15	c.C2815A	p.Q939K	CAGGTTGTGTGAT	.	100	55	119	1	.	0	0	0	0	0	3
SCN11A	11280	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38991675	38991675	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCN11A-99	NM_014139	exon1	c.G179A	p.R60K	AACTTCCTGGAGG	.	111	70	129	2	.	0	0	0	0	0	3
TTC21A	199223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	39151570	39151570	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTC21A-91	NM_001105513	exon3	c.G208T	p.D70Y	CACCCAGACGTGT	.	67	37	118	0	.	0	0	0	0	0	5
CX3CR1	1524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	39307473	39307473	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CX3CR1-658	NM_001171174	exon2	c.T624A	p.L208L	GTCACCAAGGCAT	.	94	49	141	0	.	0	0	0	0	0	5
CX3CR1	1524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	39307475	39307475	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CX3CR1-658	NM_001171174	exon2	c.C622A	p.L208I	CACCAAGGCATTC	.	91	47	140	0	.	0	0	0	0	0	5
CCDC13	152206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42787495	42787495	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC13-91	NM_144719	exon7	c.G745A	p.D249N	TGATGTCTTCCCC	.	100	44	149	0	.	0	0	0	0	0	5
CSPG5	10675	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47618883	47618883	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSPG5-91	NM_006574	exon2	c.C633G	p.D211E	GAAGTAGTCGATG	.	55	29	78	1	.	0	0	0	0	0	3
COL7A1	1294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48607044	48607044	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL7A1-160	NM_000094	exon101	c.G7595C	p.R2532P	GCACCCCGTGGGC	.	75	44	86	0	.	0	0	0	0	0	5
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52402787	52402787	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH1-67	NM_015512	exon37	c.G5796T	p.R1932R	CATCCGGGCGGGG	.	144	78	184	0	.	0	0	0	0	0	5
DNAH12	201625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57458294	57458294	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH12-47	NM_178504	exon14	c.C1755A	p.P585P	AAAGATGGGATTA	.	207	118	249	0	.	0	0	0	0	0	5
CADPS	8618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	62535700	62535700	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CADPS-281	NM_003716	exon11	c.G1844T	p.W615L	TGGACCCACAGGA	.	166	90	175	0	.	0	0	0	0	0	5
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	77607213	77607213	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ROBO2-328	NM_002942	exon9	c.C1350A	p.S450R	AATTAGCTGGTTA	.	130	70	173	0	.	0	0	0	0	0	5
ROBO1	6091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	78795964	78795964	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ROBO1-67	NM_002941	exon5	c.G586T	p.G196C	GATGGCCTCGTGG	.	79	44	97	0	.	0	0	0	0	0	5
POU1F1	5449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	87322579	87322579	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POU1F1-226	NM_001122757	exon2	c.G210T	p.L70F	GTTTCCCAACGTT	.	79	46	156	0	.	0	0	0	0	0	5
PROS1	5627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	93617357	93617357	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PROS1-153	NM_000313	exon8	c.G784T	p.G262C	TGTAACCTCCAGG	.	175	35	171	0	.	0	0	0	0	0	5
EPHA6	285220	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	97466266	97466266	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPHA6-1561	NM_001080448	exon17	c.3129-1G>T	.	CTTACAGAATGCC	.	47	15	61	1	.	0	0	0	0	0	3
OR5AC2	81050	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	97806110	97806110	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR5AC2-69	NM_054106	exon1	c.G94T	p.V32L	TTTGTTGTGTTTT	.	169	38	160	2	.	0	0	0	0	0	4
OR5H2	79310	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	98002120	98002120	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR5H2-71	NM_001005482	exon1	c.C389A	p.A130D	ATGTAGCCATATG	.	147	54	122	1	.	0	0	0	0	0	3
IMPG2	50939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	100948383	100948383	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IMPG2-93	NM_016247	exon17	c.G3474C	p.K1158N	GTTGTACTTCACA	.	93	54	74	0	.	0	0	0	0	0	5
MORC1	27136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	108812300	108812300	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MORC1-98	NM_014429	exon8	c.G672T	p.M224I	TCCAGCCATCAGT	.	79	12	79	0	.	0	0	0	0	0	4
SLC9C1	285335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111898522	111898522	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_183061	exon23	c.G2775A	p.G925G	ATCAATCCCTAAA	.	20	11	23	0	.	0	0	0	0	0	5
SIDT1	54847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113304098	113304098	+	Missense_Mutation	SNP	G	G	T	rs199757460	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SIDT1-95	NM_017699	exon9	c.G982T	p.G328W	CTTGTTGGGTTTG	.	101	54	107	0	G|1.000;A|0.000	0	0	0	0	0	5
IGSF11	152404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	118621406	118621406	+	Silent	SNP	G	G	T	rs148424020	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGSF11-90	NM_001015887	exon7	c.C1257A	p.V419V	TACCATGACAGGT	.	151	15	164	0	G|1.000;A|0.000	0	0	0	0	0	4
LRRC58	116064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	120053716	120053716	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001099678	exon3	c.G900T	p.K300N	TCCACACTTTGGG	.	93	12	92	0	.	0	0	0	0	0	4
HGD	3081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	120347254	120347254	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HGD-68	NM_000187	exon14	c.C1311A	p.N437K	CCTGGAGTTGGGA	.	120	20	118	0	.	0	0	0	0	0	5
FBXO40	51725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121340603	121340603	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXO40-273	NM_016298	exon3	c.C327T	p.T109T	TGAAACCACCCTT	.	95	50	72	0	.	0	0	0	0	0	5
SEMA5B	54437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	122680055	122680055	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEMA5B-157	NM_001256347	exon2	c.C218A	p.P73H	GTATCAGGCGGCC	.	297	159	248	1	.	0	0	0	0	0	5
KALRN	8997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	124017695	124017695	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KALRN-738	NM_003947	exon6	c.G1021C	p.G341R	GAGATCGGAGTCA	.	214	107	178	0	.	0	0	0	0	0	5
ALDH1L1	10840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	125869263	125869263	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALDH1L1-156	NM_001270364	exon8	c.G1000T	p.A334S	CCTCCGCAGTAAC	.	291	73	261	0	.	0	0	0	0	0	5
UROC1	131669	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	126224620	126224620	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UROC1-91	NM_001165974	exon8	c.C737G	p.T246S	CCAGAGGTGACAA	.	226	50	159	0	.	0	0	0	0	0	4
PODXL2	50512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	127387303	127387303	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PODXL2-91	NM_015720	exon5	c.G1226T	p.R409L	AGCACCGGGGGCC	.	270	143	196	1	.	0	0	0	0	0	5
IFT122	55764	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	129239080	129239080	+	Missense_Mutation	SNP	G	G	T	rs201755623	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IFT122-92	NM_052985	exon31	c.G3851T	p.R1284L	ACTGCCGCAGGTG	.	106	64	65	1	G|0.999;A|0.001	0	0	0	0	0	3
TMCC1	23023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129373858	129373858	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMCC1-91	NM_001017395	exon5	c.G1600T	p.E534X	TTTCTTCCATGCT	.	105	21	82	0	.	0	0	0	0	0	5
PRR23A	729627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	138724701	138724701	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001134659	exon1	c.T410A	p.V137D	TGCTCAACGACGA	.	303	153	195	0	.	0	0	0	0	0	5
PRR23C	389152	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	138762923	138762923	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRR23C-23	NM_001134657	exon1	c.C540G	p.P180P	AGCGGAGGGGTAG	.	198	115	144	1	.	0	0	0	0	0	3
CLSTN2	64084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	140167391	140167391	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLSTN2-157	NM_022131	exon6	c.G818T	p.G273V	AGCCTGGCTCCGG	.	196	37	221	0	.	0	0	0	0	0	5
CLSTN2	64084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	140265408	140265408	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLSTN2-157	NM_022131	exon10	c.C1559A	p.A520D	GCCTGGCCAGTCT	.	300	172	240	1	.	0	0	0	0	0	4
GK5	256356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	141904794	141904794	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GK5-90	NM_001039547	exon9	c.G793T	p.V265L	TAGGCACACCAAA	.	127	12	102	0	.	0	0	0	0	0	4
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142232433	142232433	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATR-1139	NM_001184	exon26	c.G4551C	p.M1517I	CTTCATCATAATG	.	469	88	395	0	.	0	0	0	0	0	5
TRPC1	7220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142523389	142523389	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPC1-92	NM_001251845	exon12	c.A2071G	p.I691V	AAGACTATCTGCT	.	263	44	247	0	.	0	0	0	0	0	5
CPA3	1359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	148586735	148586735	+	Missense_Mutation	SNP	G	G	T	rs138685459	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CPA3-154	NM_001870	exon3	c.G178T	p.V60L	CACCACGTAGCTG	.	105	19	69	0	G|1.000;A|0.000	0	0	0	0	0	5
CP	1356	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	148923984	148923984	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CP-515	NM_000096	exon6	c.C1179T	p.F393F	TTTAGTGAAGATG	.	92	13	87	1	.	0	0	0	0	0	3
P2RY12	64805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151055969	151055969	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	P2RY12-501	NM_022788	exon3	c.G665C	p.R222T	CTCGTTCTTACGT	.	121	19	124	0	.	0	0	0	0	0	5
IGSF10	285313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151166386	151166386	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGSF10-102	NM_178822	exon4	c.A1383T	p.P461P	TGCTCTTGGTAAA	.	85	49	59	0	.	0	0	0	0	0	5
RAP2B	5912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	152880651	152880651	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAP2B-847	NM_002886	exon1	c.G169T	p.D57Y	ATCCTGGATACGG	.	341	174	282	0	.	0	0	0	0	0	5
GPR149	344758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	154146424	154146424	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR149-96	NM_001038705	exon1	c.G981T	p.M327I	TTTTACCATCATG	.	341	191	221	1	.	0	0	0	0	0	4
MME	4311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	154884770	154884770	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MME-516	NM_007287	exon18	c.G1740T	p.M580I	CGGCATGGTCATA	.	116	65	144	0	.	0	0	0	0	0	5
TIPARP	25976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	156413771	156413771	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TIPARP-523	NM_015508	exon4	c.A1204T	p.R402X	AAAAGGAGACCCC	.	79	22	78	0	.	0	0	0	0	0	5
OTOL1	131149	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	161214847	161214847	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001080440	exon1	c.C252T	p.L84L	CACTCTCTCTCCC	.	179	17	145	0	.	0	0	0	0	0	3
SI	6476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	164786984	164786984	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SI-104	NM_001041	exon5	c.256-1G>T	.	AATTCCCTGATAA	.	112	17	112	0	.	0	0	0	0	0	4
BCHE	590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	165547305	165547305	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BCHE-94	NM_000055	exon2	c.G1517T	p.G506V	ACTTACCCATATT	.	82	13	93	0	.	0	0	0	0	0	4
SERPINI2	5276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	167184843	167184843	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SERPINI2-228	NM_001012303	exon4	c.G508C	p.G170R	CTTTACCATCTGT	.	36	4	28	0	.	0	0	0	0	0	4
WDR49	151790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	167218046	167218046	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDR49-155	NM_178824	exon14	c.C1870T	p.P624S	CTTCAGGCAGCTC	.	50	29	59	0	.	0	0	0	0	0	5
SAMD7	344658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	169644583	169644583	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SAMD7-91	NM_182610	exon6	c.G533T	p.G178V	GCTGGGGGCAGAG	.	215	40	143	0	.	0	0	0	0	0	5
TNIK	23043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	170928929	170928929	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNIK-550	NM_001161562	exon4	c.A282T	p.P94P	GCCTGGTGGGTTC	.	60	26	79	0	.	0	0	0	0	0	5
MFN1	55669	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	179076752	179076752	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MFN1-155	NM_033540	exon4	c.C373T	p.L125F	GCCTATCTTATGA	.	60	33	72	1	.	0	0	0	0	0	4
NDUFB5	4711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	179332777	179332777	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NDUFB5-91	NM_002492	exon2	c.G143T	p.G48V	ACAGTGGAGACCA	.	46	11	48	0	.	0	0	0	0	0	4
CCDC39	339829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	180366051	180366051	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC39-72	NM_181426	exon10	c.G1264A	p.E422K	CAATTTCTGATAA	.	68	13	79	0	.	0	0	0	0	0	4
CCDC39	339829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	180369189	180369189	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC39-72	NM_181426	exon9	c.G1167A	p.K389K	CTTTACCTTCACA	.	40	17	32	0	.	0	0	0	0	0	5
SOX2	6657	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	181430384	181430384	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SOX2-650	NM_003106	exon1	c.G236T	p.W79L	CCGAGTGGAAACT	.	312	38	265	1	.	0	0	0	0	0	3
MCF2L2	23101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183013226	183013226	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MCF2L2-293	NM_015078	exon13	c.C1537A	p.Q513K	TTTCCTGGACATC	.	159	29	146	0	.	0	0	0	0	0	5
ABCC5	10057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183679297	183679297	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCC5-137	NM_005688	exon17	c.2379+2T>A	.	GATCTTACCTCAA	.	107	53	110	0	.	0	0	0	0	0	4
VWA5B2	90113	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183952539	183952539	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_138345	exon6	c.G941T	p.R314L	GGGACCGGCAGGT	.	106	60	114	1	.	0	0	0	0	0	3
CHRD	8646	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	184105719	184105719	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHRD-93	NM_003741	exon20	c.G2452T	p.G818W	CTACAGGGGGGCA	.	231	30	181	1	.	0	0	0	0	0	3
SENP2	59343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	185337191	185337191	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SENP2-658	NM_021627	exon13	c.G1347T	p.G449G	GTCTGGGGGTTAC	.	89	54	82	0	.	0	0	0	0	0	5
HRG	3273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	186389494	186389494	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HRG-91	NM_000412	exon4	c.C474A	p.A158A	ACAAGCCAACAAA	.	263	130	219	1	.	0	0	0	0	0	5
CCDC50	152137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	191107354	191107354	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC50-90	NM_178335	exon11	c.C1392T	p.S464S	GAGTTCCACACGG	.	138	52	127	0	.	0	0	0	0	0	5
OPA1	4976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193376763	193376763	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OPA1-68	NM_130837	exon24	c.C2419T	p.L807L	GAGGCTCTGCAGG	.	108	20	89	0	.	0	0	0	0	0	5
LRRC15	131578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	194080771	194080771	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC15-71	NM_001135057	exon3	c.G1020T	p.P340P	GGCACCCGGGGAG	.	183	28	158	0	.	0	0	0	0	0	5
ACAP2	23527	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	195022705	195022705	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACAP2-136	NM_012287	exon14	c.G1315T	p.G439X	GAATTCCGGAGCA	.	213	39	180	1	.	0	0	0	0	0	3
PIGZ	80235	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	196674222	196674222	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIGZ-93	NM_025163	exon3	c.C1546G	p.L516V	GGCAGAGCCATGG	.	114	56	90	1	.	0	0	0	0	0	4
KIAA0226	9711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	197402298	197402298	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA0226-22	NM_014687	exon19	c.G2735T	p.C912F	CCTTCACAGGTCC	.	65	31	61	0	.	0	0	0	0	0	5
KIAA0226	9711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	197420601	197420601	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA0226-22	NM_014687	exon11	c.G1771A	p.E591K	CAAATTCATCAAC	.	86	20	85	0	.	0	0	0	0	0	5
UVSSA	57654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1373968	1373968	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_020894	exon11	c.C1702T	p.R568C	TGGTGCCGTGCCC	.	288	122	177	0	.	0	0	0	0	0	5
CRIPAK	285464	ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1388416	1388416	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRIPAK-90	NM_175918	exon1	c.A117G	p.R39R	ATGTCGATGCGGA	.	131	38	117	1	.	0	0	0	0	0	3
EVC	2121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	5749913	5749913	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EVC-92	NM_153717	exon8	c.C978G	p.H326Q	CCAGCACTTTCTT	.	98	51	103	0	.	0	0	0	0	0	5
ZNF518B	85460	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	10446969	10446969	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF518B-72	NM_053042	exon3	c.A984T	p.P328P	TGTCAATGGCATA	.	211	44	244	1	.	0	0	0	0	0	4
BOD1L1	259282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	13615256	13615256	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_148894	exon5	c.G1204T	p.G402X	TAAGTCCATCCAC	.	98	24	155	0	.	0	0	0	0	0	5
CC2D2A	57545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	15512967	15512967	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CC2D2A-25	NM_001080522	exon9	c.G638C	p.R213T	AAGCAAGACATAG	.	112	28	97	0	.	0	0	0	0	0	5
CLRN2	645104	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	17524572	17524572	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLRN2-68	NM_001079827	exon2	c.G339T	p.L113L	GGCTCTGGTCAGC	.	99	26	103	1	.	0	0	0	0	0	3
DCAF16	54876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	17805608	17805608	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DCAF16-91	NM_017741	exon3	c.G157T	p.A53S	GCCAGGCAAGACT	.	77	8	101	0	.	0	0	0	0	0	4
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	20530599	20530599	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLIT2-521	NM_004787	exon16	c.G1490T	p.S497I	AATTAAGTGGAGA	.	42	5	61	0	.	0	0	0	0	0	4
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	20543086	20543086	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLIT2-521	NM_004787	exon20	c.G1987C	p.A663P	CTCTTGGCCAATC	.	128	58	142	0	.	0	0	0	0	0	5
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	20550717	20550717	+	Missense_Mutation	SNP	C	C	G	rs143383158	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLIT2-521	NM_004787	exon24	c.C2455G	p.R819G	CCTCCTCGCACCT	.	79	31	56	0	C|1.000;T|0.000	0	0	0	0	0	5
PACRGL	133015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	20711305	20711305	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PACRGL-68	NM_001258345	exon5	c.276-1G>C	.	ATTTTAGATTGGT	.	28	15	46	0	.	0	0	0	0	0	4
PPARGC1A	10891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	23815899	23815899	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPARGC1A-230	NM_013261	exon8	c.G1207C	p.E403Q	GGAGCTCCTGTGA	.	45	19	40	0	.	0	0	0	0	0	5
STIM2	57620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	26997095	26997095	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STIM2-91	NM_001169118	exon4	c.A492T	p.K164N	TGTCAAAGGAACG	.	57	20	71	0	.	0	0	0	0	0	5
PCDH7	5099	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30724205	30724205	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH7-229	NM_032457	exon1	c.C1161A	p.A387A	CATGGCCCGCGAC	.	378	166	226	1	.	0	0	0	0	0	4
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30725203	30725203	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH7-229	NM_032457	exon1	c.C2159A	p.P720H	GAGATCCTCCCAG	.	167	42	200	0	.	0	0	0	0	0	5
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30726108	30726108	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH7-229	NM_032457	exon1	c.C3064A	p.Q1022K	GCCGTACAAGATC	.	122	41	145	0	.	0	0	0	0	0	5
ARAP2	116984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	36214095	36214095	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARAP2-93	NM_015230	exon5	c.G1056T	p.K352N	TTCATTCTTTATA	.	28	9	51	0	.	0	0	0	0	0	4
CHRNA9	55584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	40337897	40337897	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHRNA9-96	NM_017581	exon2	c.G118C	p.E40Q	CTTTTTGAAGATT	.	162	41	167	0	.	0	0	0	0	0	5
DCAF4L1	285429	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	41984385	41984385	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DCAF4L1-23	NM_001029955	exon1	c.C576G	p.L192L	GTCCCTCAACACC	.	209	19	270	0	.	0	0	0	0	0	3
GRXCR1	389207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42895306	42895306	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRXCR1-23	NM_001080476	exon1	c.C23A	p.P8Q	TGAAGCCAGAAAG	.	242	43	254	0	.	0	0	0	0	0	5
KCTD8	386617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	44177094	44177094	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCTD8-92	NM_198353	exon2	c.G1135T	p.A379S	CTGTTGCCTGCTG	.	108	32	121	0	.	0	0	0	0	0	5
GABRG1	2565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	46060307	46060307	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GABRG1-92	NM_173536	exon7	c.C843A	p.C281X	CAGAATGCATGGA	.	177	60	189	0	.	0	0	0	0	0	5
SGCB	6443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	52895076	52895076	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SGCB-90	NM_000232	exon4	c.G441T	p.Q147H	CCCTTGCTGAAAA	.	45	15	42	0	.	0	0	0	0	0	5
SPATA18	132671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	52944930	52944930	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPATA18-72	NM_145263	exon8	c.C1050A	p.F350L	GGCATTCAGACAC	.	105	27	101	0	.	0	0	0	0	0	5
EXOC1	55763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	56763013	56763013	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EXOC1-950	NM_018261	exon16	c.G2084T	p.R695L	AGCGTCGTGGAGA	.	79	29	101	0	.	0	0	0	0	0	5
TECRL	253017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	65180421	65180421	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TECRL-90	NM_001010874	exon5	c.C496A	p.P166T	TACATGGGATCCT	.	302	124	365	1	.	0	0	0	0	0	4
EPHA5	2044	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	66201818	66201818	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPHA5-1430	NM_004439	exon16	c.A2684G	p.Y895C	AGACGATAGCCTT	.	105	42	133	1	.	0	0	0	0	0	3
EPHA5	2044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	66467370	66467370	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPHA5-1430	NM_004439	exon3	c.G899T	p.G300V	CAGGTGCCATTTT	.	67	30	60	0	.	0	0	0	0	0	5
UBA6	55236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	68492095	68492095	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBA6-90	NM_018227	exon28	c.C2501T	p.S834F	TCATTAGATAAAA	.	29	6	32	0	.	0	0	0	0	0	4
TMPRSS11E	28983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	69343119	69343119	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMPRSS11E-70	NM_014058	exon8	c.T740A	p.F247Y	CTTCCTTTGGAGT	.	199	80	193	0	.	0	0	0	0	0	5
UGT2A3	79799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	69795545	69795545	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UGT2A3-92	NM_024743	exon6	c.G1570C	p.E524Q	TCTTTTCTATCTT	.	57	25	87	0	.	0	0	0	0	0	5
HTN1	3346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	70920167	70920167	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HTN1-91	NM_002159	exon4	c.T102C	p.H34H	ATTCCATGTAAGT	.	108	18	142	0	.	0	0	0	0	0	4
MUC7	4589	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71346966	71346966	+	Missense_Mutation	SNP	C	C	A	rs41413151	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUC7-93	NM_001145007	exon4	c.C505A	p.P169T	GCTGCCCCACCCA	.	254	126	276	1	C|0.987;A|0.013	0	0	0	0	0	4
GC	2638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	72622606	72622606	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GC-93	NM_001204307	exon9	c.G914A	p.C305Y	TTGTCACAGAGTT	.	34	16	40	0	.	0	0	0	0	0	5
CNOT6L	246175	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	78641630	78641630	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNOT6L-67	NM_144571	exon12	c.A1623G	p.P541P	CAGGAGTGGAGGG	.	754	181	816	1	.	0	0	0	0	0	4
FGF5	2250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	81207738	81207738	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FGF5-1135	NM_004464	exon3	c.C719A	p.P240H	AGCCACCTAGCCC	.	102	20	106	0	.	0	0	0	0	0	4
PRKG2	5593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	82090866	82090866	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRKG2-524	NM_006259	exon4	c.A799T	p.R267W	TCCTCCTCATTAT	.	52	12	43	0	.	0	0	0	0	0	4
PRKG2	5593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	82125944	82125944	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRKG2-524	NM_006259	exon1	c.G258T	p.V86V	CATATGCACCACA	.	137	55	143	0	.	0	0	0	0	0	5
SEC31A	22872	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	83785613	83785613	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEC31A-268	NM_001077206	exon11	c.C1336T	p.Q446X	CCTGCTGAAGTTG	.	121	59	109	2	.	0	0	0	0	0	3
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	85626662	85626662	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDFY3-93	NM_014991	exon54	c.G8220T	p.E2740D	ATCCACCTCCTAA	.	103	40	108	0	.	0	0	0	0	0	5
SLC10A6	345274	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87744863	87744863	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC10A6-22	NM_197965	exon6	c.G1112T	p.G371V	ATGTGGCCAACTG	.	124	27	132	1	.	0	0	0	0	0	4
SLC10A6	345274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87769948	87769948	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC10A6-22	NM_197965	exon1	c.G321T	p.P107P	GCCCCCCGGGCAG	.	176	82	145	0	.	0	0	0	0	0	5
HERC3	8916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	89607931	89607931	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HERC3-660	NM_014606	exon22	c.A2552C	p.E851A	TGGAGGAGACTTT	.	112	34	115	0	.	0	0	0	0	0	5
MMRN1	22915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	90857026	90857026	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MMRN1-94	NM_007351	exon6	c.T2195G	p.M732R	AGACAATGACTAT	.	130	35	184	0	.	0	0	0	0	0	5
MMRN1	22915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	90857213	90857213	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MMRN1-94	NM_007351	exon6	c.G2382T	p.Q794H	CAATCAGAGATAT	.	50	18	69	0	.	0	0	0	0	0	5
PDLIM5	10611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	95497186	95497186	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDLIM5-117	NM_006457	exon5	c.710+1G>T	.	AAATGGGTAGGTG	.	172	59	179	0	.	0	0	0	0	0	5
BMPR1B	658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	96075737	96075737	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BMPR1B-1378	NM_001256793	exon11	c.G1512T	p.W504C	ATGCTGGGCTCAC	.	168	44	140	0	.	0	0	0	0	0	5
ADH1B	125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100235236	100235236	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADH1B-136	NM_000668	exon6	c.C570T	p.V190V	TGGGGTGACCTGT	.	155	72	186	0	.	0	0	0	0	0	5
ADH1B	125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100237112	100237112	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADH1B-136	NM_000668	exon5	c.C510A	p.V170V	GAGGCAGACTTTC	.	262	72	276	0	.	0	0	0	0	0	5
NFKB1	4790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	103537720	103537720	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NFKB1-912	NM_003998	exon24	c.G2879T	p.G960V	ATTATGGGCAGGA	.	86	52	97	0	.	0	0	0	0	0	5
MANBA	4126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	103557078	103557078	+	Missense_Mutation	SNP	T	T	C	rs113843904	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MANBA-91	NM_005908	exon15	c.A2101G	p.T701A	AGAACGTGTTTTC	.	135	28	159	0	T|0.500;C|0.500	0	0	0	0	0	4
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104032111	104032111	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CENPE-277	NM_001813	exon47	c.G7598T	p.G2533V	CCGCTGCCACCTC	.	49	24	69	0	.	0	0	0	0	0	5
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104066245	104066245	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CENPE-277	NM_001813	exon32	c.G4819T	p.D1607Y	GTTGGTCTCTCTC	.	33	13	37	0	.	0	0	0	0	0	5
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104080288	104080288	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CENPE-277	NM_001813	exon22	c.T2480A	p.M827K	AAGTCCATATGAA	.	61	30	95	0	.	0	0	0	0	0	5
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104102532	104102532	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CENPE-277	NM_001813	exon12	c.A1045T	p.R349X	CTTTTCTATACCT	.	193	58	214	0	.	0	0	0	0	0	5
GSTCD	79807	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	106640417	106640417	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GSTCD-92	NM_001031720	exon3	c.G627T	p.G209G	AGTTGGGCCTCCC	.	94	38	114	2	.	0	0	0	0	0	3
DKK2	27123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	107956686	107956686	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DKK2-661	NM_014421	exon1	c.G63T	p.L21L	CACCATCAGCACC	.	121	47	140	0	.	0	0	0	0	0	5
PITX2	5308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	111539439	111539439	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PITX2-650	NM_000325	exon3	c.C817G	p.P273A	TCGGCGGCGCGTA	.	257	151	217	0	.	0	0	0	0	0	5
ANK2	287	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	114199709	114199709	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANK2-583	NM_001148	exon17	c.G1876T	p.A626S	GCCACTGCCAAGG	.	187	116	118	1	.	0	0	0	0	0	3
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	114279073	114279073	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANK2-583	NM_001148	exon38	c.C9299G	p.P3100R	AAAACCCATTTCT	.	110	73	86	0	.	0	0	0	0	0	5
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	114294594	114294594	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANK2-583	NM_001148	exon45	c.G11848A	p.E3950K	GACACCGAGCAGT	.	427	250	308	0	.	0	0	0	0	0	5
UGT8	7368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	115544819	115544819	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UGT8-92	NM_003360	exon1	c.A783T	p.V261V	TTATGTAGGAGGA	.	163	91	126	0	.	0	0	0	0	0	5
NDST4	64579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	115773935	115773935	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NDST4-94	NM_022569	exon8	c.G1762T	p.E588X	TTTTCTCTCTGGA	.	112	69	108	0	.	0	0	0	0	0	5
SYNPO2	171024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	119978893	119978893	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SYNPO2-92	NM_133477	exon5	c.A3590T	p.Q1197L	GAAGGCAAGAGTA	.	490	66	328	0	.	0	0	0	0	0	5
KIAA1109	84162	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123227129	123227129	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1109-80	NM_015312	exon55	c.C9770A	p.S3257X	GTTCTTCAGATAG	.	99	61	92	1	.	0	0	0	0	0	4
ANKRD50	57182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	125591276	125591276	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD50-90	NM_020337	exon4	c.A3156T	p.A1052A	CTGGGCTGCAATA	.	498	320	348	0	.	0	0	0	0	0	5
ANKRD50	57182	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	125592669	125592669	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD50-90	NM_020337	exon4	c.A1763C	p.Q588P	TGTCCCTGTCTAG	.	152	13	105	0	.	0	0	0	0	0	3
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	126370695	126370695	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAT4-108	NM_024582	exon9	c.A8524T	p.R2842X	CGTTACAGAATTC	.	124	18	92	0	.	0	0	0	0	0	4
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	126372220	126372220	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAT4-108	NM_024582	exon9	c.A10049T	p.K3350M	TCAATAAGAAGAC	.	141	84	107	0	.	0	0	0	0	0	5
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	134071578	134071578	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH10-92	NM_032961	exon1	c.C283A	p.L95M	CTGCACCTGGAGG	.	65	16	140	0	.	0	0	0	0	0	5
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	134071922	134071922	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH10-92	NM_032961	exon1	c.G627A	p.G209G	AGGTGGGGGAGGA	.	77	27	70	0	.	0	0	0	0	0	5
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	134073851	134073851	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH10-92	NM_032961	exon1	c.C2556A	p.P852P	CAACCCCTGCGGG	.	160	60	256	0	.	0	0	0	0	0	5
PCDH18	54510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	138451929	138451929	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH18-185	NM_019035	exon1	c.G1314T	p.E438D	CCTGTCCTCAGCG	.	29	5	65	0	.	0	0	0	0	0	4
ZNF330	27309	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	142155000	142155000	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF330-90	NM_014487	exon10	c.G820T	p.E274X	GAGGATGAGTATG	.	176	42	243	1	.	0	0	0	0	0	4
GAB1	2549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	144359748	144359748	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GAB1-1146	NM_207123	exon4	c.G1190C	p.R397P	AATTGCGAAAAGG	.	44	11	71	0	.	0	0	0	0	0	5
MMAA	166785	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	146563573	146563573	+	Missense_Mutation	SNP	G	G	T	rs186933110	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MMAA-91	NM_172250	exon3	c.G498T	p.M166I	AAAAATGCTTACT	.	71	13	102	0	G|0.999;A|0.000	0	0	0	0	0	3
ARHGAP10	79658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	148968042	148968042	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGAP10-229	NM_024605	exon20	c.1868-1G>T	.	CTCCTAGGTGACA	.	25	9	40	0	.	0	0	0	0	0	4
SFRP2	6423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	154709637	154709637	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SFRP2-659	NM_003013	exon1	c.C351A	p.L117L	CACGCAGAGCGAG	.	200	48	256	0	.	0	0	0	0	0	5
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155156608	155156608	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DCHS2-94	NM_017639	exon25	c.G7831A	p.D2611N	TGGCATCCACAGG	.	64	20	129	0	.	0	0	0	0	0	5
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155241704	155241704	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DCHS2-94	NM_017639	exon14	c.A3482T	p.H1161L	GGGTTGTGGTCAT	.	190	60	279	0	.	0	0	0	0	0	5
GRIA2	2891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	158224710	158224710	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRIA2-515	NM_000826	exon3	c.C236A	p.S79Y	TCTGCTCCCAGTT	.	49	8	68	0	.	0	0	0	0	0	4
FAM198B	51313	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	159092012	159092012	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM198B-90	NM_016613	exon2	c.G516C	p.L172L	CTTAACCAGGTTT	.	91	24	134	0	.	0	0	0	0	0	4
TMEM144	55314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	159162724	159162724	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM144-90	NM_018342	exon11	c.T866A	p.L289Q	ACTCTCTGAGTGC	.	35	10	55	0	.	0	0	0	0	0	5
RXFP1	59350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	159573178	159573178	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RXFP1-91	NM_001253727	exon18	c.C2326A	p.Q776K	ATTTCTCAATCAA	.	46	9	67	0	.	0	0	0	0	0	4
NPY1R	4886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	164247178	164247178	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NPY1R-523	NM_000909	exon2	c.C529A	p.Q177K	TTACTTGGTAGAT	.	124	26	199	0	.	0	0	0	0	0	5
TKTL2	84076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	164393463	164393463	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TKTL2-95	NM_032136	exon1	c.G1424T	p.R475L	CTGGTTCGAATGA	.	86	25	130	0	.	0	0	0	0	0	5
TLL1	7092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	166960572	166960572	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TLL1-158	NM_012464	exon10	c.T1240A	p.W414R	GGGTACTGGAGAA	.	63	13	100	0	.	0	0	0	0	0	5
TLL1	7092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	167020586	167020586	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TLL1-158	NM_012464	exon20	c.G2814T	p.V938V	TGAAGTGGAGGAA	.	172	55	290	0	.	0	0	0	0	0	5
DDX60L	91351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	169383010	169383010	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DDX60L-69	NM_001012967	exon5	c.G446T	p.G149V	CTCAGGCCTTCCT	.	87	23	86	0	.	0	0	0	0	0	5
NEK1	4750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	170506532	170506532	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NEK1-361	NM_001199399	exon10	c.G775T	p.A259S	GTTTGGCTATAAA	.	90	17	126	0	.	0	0	0	0	0	5
GALNTL6	442117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	173734869	173734869	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GALNTL6-137	NM_001034845	exon7	c.T918C	p.P306P	CGACCCTTTTGAG	.	73	23	84	0	.	0	0	0	0	0	5
WDR17	116966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	177098263	177098263	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDR17-95	NM_170710	exon29	c.T3621A	p.S1207S	TCTTTCTGAGGAA	.	49	14	58	0	.	0	0	0	0	0	5
TENM3	55714	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	183659684	183659684	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001080477	exon17	c.G3366T	p.L1122L	CGTGCTGGATGTA	.	158	35	159	1	.	0	0	0	0	0	4
MTNR1A	4543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	187455197	187455197	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MTNR1A-524	NM_005958	exon2	c.C699A	p.D233E	CCTGAAGTCCTGT	.	219	62	230	0	.	0	0	0	0	0	5
MTNR1A	4543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	187455239	187455239	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MTNR1A-524	NM_005958	exon2	c.G657T	p.Q219H	CACCCTCTGTCTG	.	236	73	253	0	.	0	0	0	0	0	5
FAT1	2195	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	187541066	187541066	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAT1-34	NM_005245	exon10	c.G6674T	p.S2225I	AACTGGCTGAAAG	.	128	35	173	2	.	0	0	0	0	0	3
TRIML1	339976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	189068073	189068073	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRIML1-156	NM_178556	exon6	c.C954A	p.P318P	GCTACCCGACAAC	.	179	57	197	0	.	0	0	0	0	0	5
KIAA0947	23379	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	5457693	5457693	+	Missense_Mutation	SNP	G	G	T	rs76783275	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA0947-48	NM_015325	exon12	c.G940T	p.G314C	CGTGACGGTGGTA	.	185	61	193	0	G|0.986;A|0.014	0	0	0	0	0	4
KIAA0947	23379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	5460966	5460966	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA0947-48	NM_015325	exon13	c.G1519T	p.G507C	ACTCGAGGTCTAT	.	216	78	211	0	.	0	0	0	0	0	5
KIAA0947	23379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	5462358	5462358	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA0947-48	NM_015325	exon13	c.A2911T	p.I971F	CAAGACATTGTGA	.	86	32	81	0	.	0	0	0	0	0	5
KIAA0947	23379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	5466585	5466585	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA0947-48	NM_015325	exon14	c.C6031G	p.R2011G	AGAGCTCGTTTGT	.	105	13	125	0	.	0	0	0	0	0	4
SEMA5A	9037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	9154783	9154783	+	Missense_Mutation	SNP	C	C	A	rs138343991	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEMA5A-91	NM_003966	exon12	c.G1298T	p.R433L	GGTACCCGCACTT	.	377	106	272	0	C|0.999;T|0.000	0	0	0	0	0	5
SEMA5A	9037	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	9202086	9202086	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEMA5A-91	NM_003966	exon9	c.G913T	p.G305C	AGATGCCATAGAT	.	269	87	259	1	.	0	0	0	0	0	3
CTNND2	1501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	11364815	11364815	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTNND2-293	NM_001332	exon8	c.G1365C	p.T455T	TGTGCTCGTGCGG	.	61	30	73	0	.	0	0	0	0	0	5
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13753344	13753344	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH5-182	NM_001369	exon63	c.C10870T	p.Q3624X	TTACCTGGAGTTC	.	67	19	59	0	.	0	0	0	0	0	5
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13841987	13841987	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH5-182	NM_001369	exon33	c.C5298G	p.S1766S	TTGAGAGGAAATT	.	62	24	67	0	.	0	0	0	0	0	5
FBXL7	23194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	15928111	15928111	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXL7-228	NM_012304	exon3	c.C240A	p.I80I	CTCCATCACCGGG	.	115	40	87	0	.	0	0	0	0	0	5
FBXL7	23194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	15928344	15928344	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXL7-228	NM_012304	exon3	c.G473T	p.R158L	CTATCCGCCTGAC	.	148	50	75	0	.	0	0	0	0	0	5
FBXL7	23194	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	15928373	15928373	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXL7-228	NM_012304	exon3	c.C502T	p.R168C	GTGGACCGCGCCC	.	195	70	120	1	.	0	0	0	0	0	3
CDH18	1016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	19473645	19473645	+	Missense_Mutation	SNP	C	C	A	rs140353037	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH18-159	NM_004934	exon13	c.G2063T	p.R688L	TCCCTCCGGTACT	.	157	59	176	0	C|1.000;T|0.000	0	0	0	0	0	5
CDH12	1010	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	21755941	21755941	+	Silent	SNP	C	C	G	rs201811162	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH12-92	NM_004061	exon14	c.G1644C	p.A548A	AATCCCCGCTGTG	.	140	42	170	1	C|0.999;T|0.001	0	0	0	0	0	3
CDH12	1010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	21783535	21783535	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH12-92	NM_004061	exon11	c.C1325A	p.A442D	TTAGTGGCGATGG	.	95	32	88	0	.	0	0	0	0	0	5
CDH12	1010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	21854885	21854885	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH12-92	NM_004061	exon7	c.C541T	p.Q181X	TGACCTGGAGTAC	.	172	58	173	0	.	0	0	0	0	0	5
PRDM9	56979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	23524575	23524575	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRDM9-139	NM_020227	exon10	c.C1083A	p.Y361X	TGAATACGGCCAG	.	255	92	225	0	.	0	0	0	0	0	5
PRDM9	56979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	23526532	23526532	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRDM9-139	NM_020227	exon11	c.C1335A	p.H445Q	TCCACACAGCCGT	.	113	35	101	0	.	0	0	0	0	0	5
PRDM9	56979	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	23527437	23527437	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRDM9-139	NM_020227	exon11	c.C2240A	p.P747H	AGAAGCCCTATGT	.	402	128	396	0	.	0	0	0	0	0	4
ADAMTS12	81792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	33576158	33576158	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS12-232	NM_030955	exon20	c.3972+1G>T	.	GTCTTACCTCGCT	.	95	36	88	0	.	0	0	0	0	0	4
ADAMTS12	81792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	33576501	33576501	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS12-232	NM_030955	exon19	c.G3630A	p.W1210X	GGGTGGCCACCAG	.	210	81	164	0	.	0	0	0	0	0	5
ADAMTS12	81792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	33658359	33658359	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS12-232	NM_030955	exon7	c.C1120A	p.R374S	AACTGCGGTGAGG	.	224	80	194	0	.	0	0	0	0	0	5
ADAMTS12	81792	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	33751563	33751563	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS12-232	NM_030955	exon3	c.G580T	p.V194F	TGTAAACGATGTG	.	223	80	235	1	.	0	0	0	0	0	3
UGT3A1	133688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	35968210	35968210	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UGT3A1-92	NM_152404	exon3	c.C222G	p.Y74X	AACTTGGTATGAT	.	67	25	57	0	.	0	0	0	0	0	5
C5orf42	65250	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	37107729	37107729	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C5orf42-94	NM_023073	exon52	c.C9569G	p.S3190C	TGGACAGACAGGC	.	348	55	262	1	.	0	0	0	0	0	3
EGFLAM	133584	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38418309	38418309	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EGFLAM-187	NM_001205301	exon12	c.G1636C	p.D546H	AGAATTGACATGA	.	227	32	173	1	.	0	0	0	0	0	4
OSMR	9180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38881777	38881777	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OSMR-496	NM_001168355	exon4	c.A329T	p.H110L	CCACACACTTTGT	.	111	46	113	0	.	0	0	0	0	0	5
C9	735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	39308382	39308382	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C9-90	NM_001737	exon8	c.G1190T	p.G397V	TCAGCTCCAACAG	.	223	77	203	0	.	0	0	0	0	0	5
PTGER4	5734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	40692043	40692043	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTGER4-658	NM_000958	exon3	c.A1030T	p.I344F	GAGAAGATCAAAT	.	167	61	151	0	.	0	0	0	0	0	5
CARD6	84674	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	40841514	40841514	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CARD6-230	NM_032587	exon1	c.C30G	p.I10M	AGAGATCATAGAA	.	53	21	56	1	.	0	0	0	0	0	3
HCN1	348980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	45353216	45353216	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HCN1-91	NM_021072	exon5	c.G1363T	p.D455Y	GAGGATCATTGAG	.	62	23	59	0	.	0	0	0	0	0	5
ITGA2	3673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	52368469	52368469	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITGA2-226	NM_002203	exon19	c.G2373T	p.E791D	TGGTGAGGACGGA	.	50	10	63	0	.	0	0	0	0	0	4
GPX8	493869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	54457048	54457048	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPX8-68	NM_001008397	exon2	c.G431T	p.G144V	TTCTAGGATCTGA	.	36	9	44	0	.	0	0	0	0	0	4
ACTBL2	345651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	56778494	56778494	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACTBL2-25	NM_001017992	exon1	c.G41A	p.G14E	CCTGACCCATTAT	.	160	72	179	0	.	0	0	0	0	0	5
LRRC70	100130733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	61876613	61876613	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_181506	exon2	c.G1348A	p.E450K	GAGACTGAGAACA	.	92	38	105	0	.	0	0	0	0	0	5
ADAMTS6	11174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	64747376	64747376	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS6-226	NM_197941	exon7	c.C999G	p.L333L	GTGGGAGAGAATG	.	248	26	196	0	.	0	0	0	0	0	4
ADAMTS6	11174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	64755998	64755998	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS6-226	NM_197941	exon4	c.G630T	p.S210S	CTCACCCGAAACC	.	81	21	76	0	.	0	0	0	0	0	5
F2RL1	2150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	76129178	76129178	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	F2RL1-226	NM_005242	exon2	c.G746T	p.G249V	CCATTGGGGTCTT	.	159	37	166	0	.	0	0	0	0	0	5
S100Z	170591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	76173537	76173537	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	S100Z-91	NM_130772	exon4	c.G180T	p.Q60H	AGTGCAGGACCTG	.	153	28	179	0	.	0	0	0	0	0	5
PAPD4	167153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	78944447	78944447	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAPD4-69	NM_173797	exon10	c.G829T	p.E277X	TGTGTGGAGTTTG	.	99	18	137	0	.	0	0	0	0	0	4
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79025201	79025201	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CMYA5-77	NM_153610	exon2	c.A613G	p.T205A	CCGATTACTGGGG	.	160	23	195	0	.	0	0	0	0	0	5
CMYA5	202333	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	79031613	79031613	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CMYA5-77	NM_153610	exon2	c.A7025T	p.D2342V	TTACTGATAGTAA	.	123	31	117	1	.	0	0	0	0	0	3
THBS4	7060	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79366521	79366521	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	THBS4-90	NM_003248	exon12	c.T1508G	p.I503S	ATGGCATTGGCGA	.	213	45	199	1	.	0	0	0	0	0	4
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	82785935	82785935	+	Missense_Mutation	SNP	C	C	A	rs202176395	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VCAN-238	NM_004385	exon3	c.C89A	p.P30Q	AAAGCCCACCGGT	.	45	12	47	0	C|0.999;T|0.001	0	0	0	0	0	4
VCAN	1462	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	82808022	82808022	+	Silent	SNP	C	C	A	rs142777690	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VCAN-238	NM_004385	exon6	c.C849A	p.L283L	GGAACTCCAGGCG	.	102	52	161	1	C|0.999;T|0.001	0	0	0	0	0	3
EDIL3	10085	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	83356153	83356153	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EDIL3-131	NM_005711	exon9	c.C1103T	p.T368I	CCAGAGGTCCAGG	.	140	21	128	1	.	0	0	0	0	0	3
MEF2C	4208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	88047710	88047710	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MEF2C-704	NM_001193347	exon7	c.G607C	p.G203R	TTACACCAGGAGA	.	192	44	211	0	.	0	0	0	0	0	5
POU5F2	134187	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	93077152	93077152	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_153216	exon1	c.G118T	p.A40S	CAGGGGCCGCCTG	.	144	68	102	1	.	0	0	0	0	0	3
POU5F2	134187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	93077153	93077153	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_153216	exon1	c.G117T	p.A39A	AGGGGCCGCCTGG	.	145	68	102	0	.	0	0	0	0	0	4
KIAA0825	285600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	93805738	93805738	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA0825-91	NM_001145678	exon10	c.C1800T	p.V600V	AACTCTGACGCAG	.	108	18	108	0	.	0	0	0	0	0	4
ANKRD32	84250	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	94027837	94027837	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD32-92	NM_032290	exon20	c.C2571A	p.V857V	GTGTGTCCAGGAA	.	145	37	146	1	.	0	0	0	0	0	4
MCTP1	79772	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	94206155	94206155	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MCTP1-92	NM_024717	exon16	c.G2283T	p.K761N	AATGTACTTCTGT	.	80	37	120	2	.	0	0	0	0	0	3
FAM81B	153643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	94727146	94727146	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM81B-92	NM_152548	exon1	c.C53T	p.S18L	AAAAATCACAGAG	.	123	26	129	0	.	0	0	0	0	0	5
FAM81B	153643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	94772570	94772570	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM81B-92	NM_152548	exon7	c.C853T	p.Q285X	ATGGTCCAGGGGG	.	103	50	94	0	.	0	0	0	0	0	5
TTC37	9652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	94852291	94852291	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTC37-94	NM_014639	exon25	c.2516-1G>A	.	CAATACCTGAAAA	.	108	51	126	0	.	0	0	0	0	0	5
ARSK	153642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	94901701	94901701	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARSK-91	NM_198150	exon2	c.127-1G>T	.	TTTCCAGGATGGA	.	38	8	53	0	.	0	0	0	0	0	4
SPATA9	83890	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	95018555	95018555	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPATA9-90	NM_031952	exon1	c.C4G	p.P2A	TGATTGGCATGGT	.	138	55	151	1	.	0	0	0	0	0	3
SLCO6A1	133482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	101794169	101794169	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLCO6A1-96	NM_173488	exon6	c.C1048G	p.R350G	GTTTACGTTTCCT	.	52	20	38	0	.	0	0	0	0	0	5
PPIP5K2	23262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	102508858	102508858	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPIP5K2-92	NM_001276277	exon20	c.2287-1G>T	.	TGCTCAGGAATAT	.	55	26	80	0	.	0	0	0	0	0	4
APC	324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	112175595	112175595	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	APC-12026	NM_001127510	exon17	c.G4304C	p.R1435T	CAAGCAGAAGTAA	.	114	29	134	0	.	0	0	0	0	0	5
YTHDC2	64848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	112899724	112899724	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	YTHDC2-92	NM_022828	exon20	c.G2611T	p.V871L	CCTTTTGTACTAC	.	145	56	136	0	.	0	0	0	0	0	5
AQPEP	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	115318994	115318994	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_173800	exon2	c.G706A	p.A236T	CTGTTAGCGTCCC	.	174	88	258	0	.	0	0	0	0	0	5
HSD17B4	3295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	118809620	118809620	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HSD17B4-92	NM_001199291	exon4	c.G205T	p.D69Y	GGAGGGGACTTCA	.	128	20	165	0	.	0	0	0	0	0	4
MEGF10	84466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	126769171	126769171	+	Missense_Mutation	SNP	C	C	G	rs202135671	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MEGF10-94	NM_032446	exon15	c.C1810G	p.P604A	TGTGCACCAGGCT	.	166	40	164	0	C|0.999;A|0.000	0	0	0	0	0	5
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127595479	127595479	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBN2-146	NM_001999	exon65	c.G8407T	p.V2803F	TGTTGACGGGGCT	.	127	22	145	0	.	0	0	0	0	0	5
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	127640733	127640733	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBN2-146	NM_001999	exon45	c.G5716T	p.G1906C	ACAAGCCATGACT	.	199	38	209	0	.	0	0	0	0	0	4
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	127782257	127782257	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBN2-146	NM_001999	exon7	c.G869T	p.G290V	CAGTTTCCTCCTT	.	77	11	83	0	.	0	0	0	0	0	4
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127800433	127800433	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBN2-146	NM_001999	exon6	c.C810A	p.R270R	TCCAGTGCGGATG	.	45	16	61	0	.	0	0	0	0	0	5
SLC27A6	28965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	128302151	128302151	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC27A6-90	NM_001017372	exon1	c.G321T	p.T107T	GGACACGGTGGCT	.	86	37	105	0	.	0	0	0	0	0	5
LYRM7	90624	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	130522733	130522733	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LYRM7-68	NM_181705	exon4	c.G175T	p.G59C	AAAATAGGTTCTG	.	126	29	143	1	.	0	0	0	0	0	4
RAD50	10111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	131940656	131940656	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAD50-229	NM_005732	exon16	c.T2683C	p.S895P	GAATTATCCACTG	.	170	33	196	0	.	0	0	0	0	0	5
SHROOM1	134549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	132160321	132160321	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SHROOM1-91	NM_133456	exon3	c.G1227T	p.Q409H	GGGCCCCTGGGAG	.	103	50	103	0	.	0	0	0	0	0	5
GDF9	2661	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	132199862	132199862	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GDF9-227	NM_005260	exon1	c.C364T	p.R122W	TGTGCCGGGTACA	.	135	23	156	1	.	0	0	0	0	0	4
TXNDC15	79770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	134235224	134235224	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TXNDC15-154	NM_024715	exon5	c.T932A	p.I311K	ACCAAATAGGCCC	.	89	18	63	0	.	0	0	0	0	0	5
TRPC7	57113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	135692848	135692848	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001167576	exon2	c.C228G	p.Y76X	CCCCATGTAGTCC	.	167	28	158	0	.	0	0	0	0	0	5
TRPC7	57113	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	135692905	135692905	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001167576	exon2	c.G171T	p.P57P	GACCACCGGGATG	.	150	33	158	1	.	0	0	0	0	0	4
EGR1	1958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	137802588	137802588	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EGR1-227	NM_001964	exon2	c.G450T	p.W150C	CTTGTGGCCCGAG	.	109	17	106	0	.	0	0	0	0	0	4
PCDHA1	56147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140167127	140167127	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHA1-23	NM_031411	exon1	c.C1252T	p.L418L	GAGAGCCTGTCGG	.	245	60	132	0	.	0	0	0	0	0	5
PCDHA2	56146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140176290	140176290	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHA2-94	NM_031495	exon1	c.G1741C	p.V581L	GAGCTGGTGCCGT	.	412	98	90	0	.	0	0	0	0	0	5
PCDHA3	56145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140181421	140181421	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHA3-98	NM_031497	exon1	c.A639T	p.T213T	AATAACAGCAATT	.	51	24	71	0	.	0	0	0	0	0	5
PCDHA4	56144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140187138	140187138	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHA4-96	NM_031500	exon1	c.G366A	p.E122E	CGTGGAGGTGAGG	.	234	59	263	0	.	0	0	0	0	0	5
PCDHA6	56142	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140208235	140208235	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHA6-92	NM_031849	exon1	c.G559A	p.D187N	AACAGTGATGACA	.	118	27	111	1	.	0	0	0	0	0	3
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140223235	140223235	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHA8-92	NM_031856	exon1	c.C2329A	p.P777T	TGCCTTCCTCCTG	.	490	102	475	0	.	0	0	0	0	0	5
PCDHA10	56139	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140237814	140237814	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHA10-99	NM_031859	exon1	c.G2181T	p.E727D	CACCGAGGGCGCA	.	309	164	73	1	.	0	0	0	0	0	4
PCDHA11	56138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140249406	140249406	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHA11-67	NM_018902	exon1	c.C718A	p.P240T	AATGATCCAGAGT	.	153	66	156	0	.	0	0	0	0	0	5
PCDHB1	29930	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140433080	140433080	+	Missense_Mutation	SNP	G	G	C	rs36090285	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB1-90	NM_013340	exon1	c.G2025C	p.Q675H	GTTCCAGGATCCA	.	150	73	191	0	G|0.995;A|0.005	0	0	0	0	0	4
PCDHB4	56131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140502574	140502574	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB4-93	NM_018938	exon1	c.G994A	p.V332I	GGCACTGTAGTCA	.	157	63	175	0	.	0	0	0	0	0	5
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140562215	140562215	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB16-92	NM_020957	exon1	c.C81T	p.G27G	GGCGGGCGCCGAG	.	130	46	140	0	.	0	0	0	0	0	5
PCDHB16	57717	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	140562775	140562775	+	Missense_Mutation	SNP	C	C	G	rs139379718	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB16-92	NM_020957	exon1	c.C641G	p.A214G	TGACAGCGCTGGA	.	65	13	88	0	C|0.997;T|0.003	0	0	0	0	0	3
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140562794	140562794	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB16-92	NM_020957	exon1	c.A660T	p.P220P	CTCTCCACCGCGA	.	73	12	94	0	.	0	0	0	0	0	4
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	5	140563800	140563800	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB16-92	NM_020957	exon1	c.G1666T	p.D556Y	GCCAACGACAACT	.	222	90	22	0	.	0	0	0	0	0	3
PCDHB10	56126	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	5	140573565	140573565	+	Silent	SNP	G	G	T	rs61741789	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB10-92	NM_018930	exon1	c.G1440T	p.S480S	AGACTCGGGCACC	.	241	63	141	0	G|0.680;A|0.320	0	0	0	0	0	3
PCDHB10	56126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140574448	140574448	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB10-92	NM_018930	exon1	c.G2323T	p.D775Y	ATTTCGGATATTC	.	141	55	172	0	.	0	0	0	0	0	5
PCDHB13	56123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140595009	140595009	+	Silent	SNP	C	C	G	rs201145725	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB13-93	NM_018933	exon1	c.C1314G	p.T438T	TATGACCGTGCTG	.	227	46	235	0	C|0.999;T|0.000	0	0	0	0	0	5
PCDHB13	56123	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140595284	140595284	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB13-93	NM_018933	exon1	c.G1589T	p.R530L	AGTTCCGCGTGGG	.	443	198	184	1	.	0	0	0	0	0	3
PCDHB14	56122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140604121	140604121	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB14-91	NM_018934	exon1	c.C1044A	p.T348T	AGTGACCATATCG	.	76	11	81	0	.	0	0	0	0	0	4
PCDHB15	56121	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140625197	140625197	+	Silent	SNP	C	C	A	rs149965698	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB15-156	NM_018935	exon1	c.C51A	p.L17L	GATTCTCCTTCTT	.	64	30	66	1	C|1.000;T|0.000	0	0	0	0	0	4
PCDHGA1	56114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140710828	140710828	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHGA1-137	NM_018912	exon1	c.G577C	p.E193Q	CATCCAGAGATGG	.	89	20	99	0	.	0	0	0	0	0	5
PCDHGA2	56113	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140720729	140720729	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHGA2-71	NM_018915	exon1	c.A2191T	p.S731C	GGAGGCAGCTTGA	.	209	93	191	1	.	0	0	0	0	0	3
PCDHGB1	56104	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140730366	140730366	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHGB1-33	NM_018922	exon1	c.A539T	p.K180M	CAACGAAGGAAAG	.	122	36	170	1	.	0	0	0	0	0	3
PCDHGB1	56104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140731133	140731133	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHGB1-33	NM_018922	exon1	c.C1306A	p.L436M	ATCACCCTGCACA	.	161	76	170	0	.	0	0	0	0	0	5
PCDHGB1	56104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140731260	140731260	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHGB1-33	NM_018922	exon1	c.G1433T	p.G478V	ATTTGGGACCCAA	.	120	71	127	0	.	0	0	0	0	0	5
PCDHGA5	56110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140744142	140744142	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHGA5-35	NM_032054	exon1	c.G245T	p.G82V	GAAGCGGCAGCTT	.	113	30	119	0	.	0	0	0	0	0	5
PCDHGA5	56110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140745589	140745589	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHGA5-35	NM_032054	exon1	c.C1692T	p.Y564Y	CCTGTACCCCGCC	.	235	96	247	0	.	0	0	0	0	0	5
PCDHGA6	56109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140753654	140753654	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHGA6-67	NM_018919	exon1	c.G4T	p.A2S	GTAATGGCGCCTC	.	215	46	161	0	.	0	0	0	0	0	5
PCDHGA7	56108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140762550	140762550	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_032087	exon1	c.A84G	p.A28A	CTGGGCAGGACGT	.	119	26	97	0	.	0	0	0	0	0	5
PCDHGA8	9708	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140773971	140773971	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_014004	exon1	c.C1591A	p.L531M	CAGCTACTGGTAA	.	216	86	220	1	.	0	0	0	0	0	4
PCDHGA9	56107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140782720	140782720	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_032089	exon1	c.C201T	p.V67V	CATCGTCTCTAGA	.	91	22	94	0	.	0	0	0	0	0	5
PCDHGA9	56107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140783342	140783342	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_032089	exon1	c.G823C	p.G275R	ATCAACGGAAAAG	.	92	19	112	0	.	0	0	0	0	0	5
PCDHGB7	56099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140798387	140798387	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHGB7-29	NM_018927	exon1	c.G961T	p.A321S	ATAGAAGCAAAAG	.	128	20	162	0	.	0	0	0	0	0	5
YIPF5	81555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	143541849	143541849	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	YIPF5-92	NM_001024947	exon5	c.A544T	p.S182C	GGACACTTGCCAC	.	410	107	414	0	.	0	0	0	0	0	5
KCTD16	57528	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	143853384	143853384	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCTD16-137	NM_020768	exon4	c.C994G	p.P332A	TGTGGTCCCGTGA	.	413	68	418	1	.	0	0	0	0	0	3
LARS	51520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145509683	145509683	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LARS-90	NM_020117	exon25	c.G2526A	p.G842G	GTGCATCCCTTCC	.	77	37	104	0	.	0	0	0	0	0	5
SH3TC2	79628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	148406710	148406710	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SH3TC2-92	NM_024577	exon11	c.C2585A	p.A862D	TTCAAGGCCCGAA	.	138	53	182	0	.	0	0	0	0	0	5
SH3TC2	79628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	148407036	148407036	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SH3TC2-92	NM_024577	exon11	c.G2259T	p.R753R	GGTGCTCCGGTCT	.	217	43	237	0	.	0	0	0	0	0	5
PCYOX1L	78991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	148745675	148745675	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCYOX1L-91	NM_024028	exon4	c.G641T	p.R214L	TCCTGCGGGCCAG	.	71	34	72	0	.	0	0	0	0	0	5
PDGFRB	5159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149505087	149505087	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDGFRB-1499	NM_002609	exon12	c.C1728G	p.G576G	CTCATGGCCGTCA	.	339	92	245	0	.	0	0	0	0	0	5
CCDC69	26112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150565009	150565009	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC69-92	NM_015621	exon7	c.A589T	p.R197W	GCCGCCTGTCCAG	.	139	60	113	0	.	0	0	0	0	0	5
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150925322	150925322	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAT2-96	NM_001447	exon9	c.C5366A	p.A1789D	TCAGAGGCATGAA	.	86	43	75	0	.	0	0	0	0	0	5
KIF4B	285643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	154396953	154396953	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF4B-1	NM_001099293	exon1	c.G3534T	p.V1178V	GCAGGTGCTGTCA	.	224	61	162	0	.	0	0	0	0	0	5
ADAM19	8728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156997966	156997966	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAM19-294	NM_033274	exon2	c.C117T	p.P39P	CAGCTTGGGGCTG	.	122	52	69	0	.	0	0	0	0	0	5
EBF1	1879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	158139314	158139314	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EBF1-92	NM_024007	exon14	c.C1397A	p.S466X	TGTGGTGATACGC	.	236	103	189	0	.	0	0	0	0	0	5
GABRA1	2554	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	161322775	161322775	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GABRA1-93	NM_001127644	exon9	c.C960G	p.C320W	CGTGTGCTATGCC	.	272	126	237	2	.	0	0	0	0	0	3
GABRG2	2566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	161576148	161576148	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GABRG2-95	NM_198903	exon9	c.C1077G	p.S359R	CCTCAGCACCATT	.	172	39	116	0	.	0	0	0	0	0	5
CCNG1	900	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	162869514	162869514	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCNG1-725	NM_199246	exon7	c.G831A	p.L277L	GCAATTGAAGCAT	.	205	76	211	1	.	0	0	0	0	0	3
TENM2	57451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	167645293	167645293	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001122679	exon23	c.G4370T	p.S1457I	CACTCAGCAAACT	.	306	101	252	0	.	0	0	0	0	0	5
DOCK2	1794	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	169141144	169141144	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DOCK2-97	NM_004946	exon18	c.G1772T	p.G591V	TTGGGGGGCTTTC	.	187	102	111	1	.	0	0	0	0	0	3
FAM196B	100131897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169310385	169310385	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001129891	exon2	c.G518C	p.R173T	GGGACCCTTGGGA	.	144	57	118	0	.	0	0	0	0	0	5
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169461501	169461501	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DOCK2-97	NM_004946	exon35	c.G3566T	p.R1189L	ATTACCGGGGTGT	.	169	87	113	0	.	0	0	0	0	0	5
KCNMB1	3779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169810783	169810783	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNMB1-92	NM_004137	exon3	c.T206G	p.L69R	ACCTTCTTGCCCT	.	182	56	143	0	.	0	0	0	0	0	5
TLX3	30012	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	170736778	170736778	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TLX3-658	NM_021025	exon1	c.G409A	p.D137N	GTGAAAGACCGCT	.	121	44	46	0	.	0	0	0	0	0	4
EIF4E1B	253314	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176070253	176070253	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001099408	exon4	c.C186A	p.H62Q	GCTGCACCCCTTG	.	210	92	166	1	.	0	0	0	0	0	4
ADAMTS2	9509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178770799	178770799	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS2-228	NM_021599	exon2	c.C503A	p.S168Y	ACAGAGGAGGCTT	.	138	51	47	0	.	0	0	0	0	0	5
C5orf60	285679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179069972	179069972	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001142306	exon4	c.C581A	p.S194Y	TTGGAGGAGCTCA	.	506	209	364	0	.	0	0	0	0	0	5
MAML1	9794	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179195985	179195985	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAML1-848	NM_014757	exon3	c.G1866T	p.K622N	AATGAAGCAGCAT	.	187	67	157	1	.	0	0	0	0	0	4
BPHL	670	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	3140673	3140673	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BPHL-90	NM_004332	exon6	c.C718A	p.H240N	ATTGTGCACGGTG	.	226	102	217	1	.	0	0	0	0	0	4
CDYL	9425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	4954182	4954182	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDYL-90	NM_004824	exon7	c.G1527T	p.L509L	GGAGCTGGAGCAG	.	150	45	146	0	.	0	0	0	0	0	5
DSP	1832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	7579564	7579564	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DSP-518	NM_004415	exon23	c.C3141A	p.A1047A	AGATGCCAACTCG	.	104	34	112	1	.	0	0	0	0	0	3
CDKAL1	54901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	21000542	21000542	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDKAL1-92	NM_017774	exon11	c.G994T	p.E332X	CTCATGGAAATGA	.	61	17	55	0	.	0	0	0	0	0	5
GPLD1	2822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	24473883	24473883	+	Missense_Mutation	SNP	C	C	A	rs139020496	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPLD1-228	NM_001503	exon6	c.G454T	p.G152C	AGGAGCCGTGAAA	.	88	49	60	0	C|1.000;T|0.000	0	0	0	0	0	5
SLC17A2	10246	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	25918769	25918769	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC17A2-91	NM_005835	exon6	c.G595C	p.V199L	CCCCCACACAGAG	.	173	60	130	1	.	0	0	0	0	0	3
HIST1H2BH	8345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26252078	26252078	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIST1H2BH-93	NM_003524	exon1	c.T200A	p.V67D	CCTTTGTCAACGA	.	283	116	249	1	.	0	0	0	0	0	5
BTN3A3	10384	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	26451901	26451901	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BTN3A3-90	NM_006994	exon11	c.1019-2A>T	.	CTCTGCAGCGGAT	.	133	40	145	0	.	0	0	0	0	0	4
HIST1H2BM	8342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27783029	27783029	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIST1H2BM-131	NM_003521	exon1	c.A208T	p.I70F	AACGACATCTTTG	.	193	60	200	0	.	0	0	0	0	0	5
GABBR1	2550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29581230	29581230	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GABBR1-521	NM_001470	exon12	c.G1356T	p.K452N	CAGTCGCTTGGTT	.	149	52	125	0	.	0	0	0	0	0	5
TRIM10	10107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30126189	30126189	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRIM10-226	NM_052828	exon3	c.G743T	p.R248M	AGCTCCCTTGCTG	.	114	31	110	0	.	0	0	0	0	0	5
MICB	4277	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31474946	31474946	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MICB-90	NM_005931	exon4	c.G761C	p.G254A	AGTGGGGGGATGT	.	315	54	278	0	.	0	0	0	0	0	4
C6orf47	57827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31627653	31627653	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C6orf47-91	NM_021184	exon1	c.G72T	p.P24P	GTAAGGCGGGTCA	.	154	49	136	0	.	0	0	0	0	0	5
VARS	7407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31759413	31759413	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VARS-93	NM_006295	exon8	c.C1074T	p.N358N	GATGGCGTTGGTG	.	251	43	231	0	.	0	0	0	0	0	5
NELFE	7936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31922485	31922485	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_002904	exon7	c.G589A	p.D197N	CTCTGTCCCGGTT	.	78	29	83	0	.	0	0	0	0	0	5
NELFE	7936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31926215	31926215	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_002904	exon2	c.G9A	p.V3V	GGGTATCACCAAC	.	78	34	63	0	.	0	0	0	0	0	5
RXRB	6257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33164382	33164382	+	Silent	SNP	C	C	A	rs148086899	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RXRB-189	NM_021976	exon5	c.G822T	p.A274A	CTGTACCGCTGCA	.	60	12	67	0	C|1.000;T|0.000	0	0	0	0	0	5
ZBTB22	9278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33283358	33283358	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZBTB22-69	NM_001145338	exon2	c.G1336T	p.G446W	GGTTCCCTGGTGG	.	259	93	236	0	.	0	0	0	0	0	5
PHF1	5252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33381015	33381015	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHF1-226	NM_002636	exon5	c.G380C	p.G127A	CCCCTGGAGAGGG	.	122	57	142	0	.	0	0	0	0	0	5
GRM4	2914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	34101175	34101175	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRM4-525	NM_001256811	exon2	c.G99T	p.K33N	TTTGGGCTTTCCC	.	210	76	127	0	.	0	0	0	0	0	5
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	38890846	38890846	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH8-615	NM_001206927	exon72	c.G10675T	p.D3559Y	CTTAATGACGCTG	.	37	9	45	0	.	0	0	0	0	0	4
KCNK5	8645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	39162077	39162077	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNK5-227	NM_003740	exon4	c.G502T	p.V168L	CCCACACGATGAA	.	401	134	358	1	.	0	0	0	0	0	4
KCNK16	83795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	39284652	39284652	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNK16-229	NM_001135106	exon4	c.G567T	p.M189I	GAAGACCATGGGT	.	112	40	106	0	.	0	0	0	0	0	5
DAAM2	23500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	39851832	39851832	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DAAM2-228	NM_015345	exon15	c.A1940T	p.Y647F	CAGCCTACCAGAG	.	96	45	91	0	.	0	0	0	0	0	5
LRFN2	57497	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	40359771	40359771	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRFN2-93	NM_020737	exon3	c.G2281A	p.G761S	GCATGCCGTTGAC	.	312	116	233	1	.	0	0	0	0	0	3
FOXP4	116113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41555166	41555166	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FOXP4-289	NM_001012426	exon7	c.C788G	p.A263G	CGTTTGCCGCTCC	.	333	42	192	0	.	0	0	0	0	0	5
KLC4	89953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43038449	43038449	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLC4-94	NM_201523	exon8	c.C1055G	p.P352R	ATCATCCAGATGT	.	293	111	207	0	.	0	0	0	0	0	5
SLC22A7	10864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43266402	43266402	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC22A7-90	NM_006672	exon1	c.G306C	p.G102G	CCGTGGGGAGCTG	.	130	55	103	0	.	0	0	0	0	0	5
TJAP1	93643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43472938	43472938	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TJAP1-90	NM_001146016	exon11	c.G1019T	p.R340L	AGGTTCGGATCCC	.	107	35	122	0	.	0	0	0	0	0	5
POLR1C	9533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43488718	43488718	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POLR1C-90	NM_203290	exon8	c.G854T	p.R285I	TCAGCAGAGAAAT	.	91	34	68	0	.	0	0	0	0	0	5
TDRD6	221400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46657182	46657182	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TDRD6-138	NM_001168359	exon1	c.G1317A	p.S439S	ACAGTCGTGTTGC	.	50	21	56	0	.	0	0	0	0	0	5
PLA2G7	7941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46677128	46677128	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLA2G7-90	NM_005084	exon9	c.G805T	p.V269L	CAATTACTGCTAT	.	80	16	53	0	.	0	0	0	0	0	5
ANKRD66	100287718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	46717703	46717703	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001162435	exon2	c.G140C	p.R47T	TGCCCAGAGTTTC	.	77	14	57	0	.	0	0	0	0	0	3
RHAG	6005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	49574560	49574560	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RHAG-154	NM_000324	exon10	c.1212+1G>A	.	ACAGTACCTTCCA	.	82	33	76	0	.	0	0	0	0	0	4
CRISP3	10321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49701562	49701562	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRISP3-92	NM_001190986	exon6	c.347-1G>T	.	TTAGACCTAAGAA	.	151	63	124	0	.	0	0	0	0	0	5
PGK2	5232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49754711	49754711	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PGK2-91	NM_138733	exon1	c.C190G	p.L64V	GACCTAGATGACT	.	182	61	164	0	.	0	0	0	0	0	5
DEFB113	245927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49936521	49936521	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DEFB113-90	NM_001037729	exon2	c.G118T	p.G40C	AAGCACCACGAAC	.	77	28	99	0	.	0	0	0	0	0	5
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51907711	51907711	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKHD1-603	NM_170724	exon27	c.C3043A	p.L1015I	CATTTAGGAAGAG	.	111	31	120	0	.	0	0	0	0	0	5
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51907765	51907765	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKHD1-603	NM_170724	exon27	c.A2989T	p.M997L	CCAACATCAAGAT	.	155	63	161	0	.	0	0	0	0	0	5
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51908447	51908447	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKHD1-603	NM_170724	exon26	c.G2797T	p.V933F	AATGGACACAGGG	.	110	41	106	0	.	0	0	0	0	0	5
MCM3	4172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	52141266	52141266	+	Missense_Mutation	SNP	G	G	A	rs144158830	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MCM3-228	NM_002388	exon9	c.C1309T	p.R437C	CCAGACGGCGCTC	.	127	54	117	0	G|0.999;A|0.001	0	0	0	0	0	5
GCLC	2729	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	53409375	53409375	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GCLC-515	NM_001197115	exon1	c.G69T	p.R23R	GTGCCGCCGCACG	.	114	41	47	0	.	0	0	0	0	0	4
FAM83B	222584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	54791229	54791229	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM83B-96	NM_001010872	exon3	c.G505T	p.A169S	GTTGAGGCATCAA	.	66	24	64	0	.	0	0	0	0	0	5
DST	667	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56426291	56426291	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DST-523	NM_015548	exon38	c.G6256T	p.G2086C	AGAGGCCAAGATC	.	121	48	95	1	.	0	0	0	0	0	4
DST	667	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56480710	56480710	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DST-523	NM_001723	exon24	c.C7555T	p.Q2519X	CACACTGTCGCAG	.	153	51	138	1	.	0	0	0	0	0	4
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	56495106	56495106	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DST-523	NM_001723	exon17	c.G2607T	p.L869L	TTCACACAGTTTA	.	59	10	85	0	.	0	0	0	0	0	4
ZNF451	26036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56965611	56965611	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF451-93	NM_001257273	exon4	c.G397T	p.E133X	ATCTCTGAGACAG	.	61	18	61	0	.	0	0	0	0	0	5
KHDRBS2	202559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	62407105	62407105	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KHDRBS2-272	NM_152688	exon8	c.G947T	p.S316I	CCGTAGCTGTCAT	.	114	32	80	0	.	0	0	0	0	0	5
EYS	346007	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	65300987	65300987	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EYS-660	NM_001142800	exon26	c.G4773T	p.A1591A	TAATATCGCTGAG	.	91	27	99	1	.	0	0	0	0	0	3
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	65655797	65655797	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EYS-660	NM_001142800	exon15	c.G2270C	p.C757S	CACACACACTGGT	.	52	16	50	0	.	0	0	0	0	0	5
EYS	346007	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	66053984	66053984	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EYS-660	NM_001142801	exon10	c.G1546C	p.D516H	CAGGATCGTTCAC	.	185	64	185	1	.	0	0	0	0	0	4
BAI3	577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	69943298	69943298	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BAI3-1148	NM_001704	exon18	c.C2597A	p.P866H	AGCAACCTAGAGA	.	158	49	199	0	.	0	0	0	0	0	5
COL19A1	1310	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	70639346	70639346	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL19A1-156	NM_001858	exon6	c.G420T	p.K140N	AAAGAAGGTGGTG	.	116	45	119	1	.	0	0	0	0	0	3
COL9A1	1297	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	70981789	70981789	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL9A1-94	NM_001851	exon13	c.C1068A	p.G356G	ACCACGGCCCTAA	.	160	40	169	2	.	0	0	0	0	0	3
B3GAT2	135152	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	71665781	71665781	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	B3GAT2-93	NM_080742	exon1	c.G352T	p.D118Y	CCGCGTCCTCCAC	.	99	34	16	0	.	0	0	0	0	0	4
KHDC3L	154288	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	74072990	74072990	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001017361	exon2	c.G342T	p.Q114H	GCTCCAGGCGAAA	.	180	63	106	1	.	0	0	0	0	0	3
COL12A1	1303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	75814965	75814965	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL12A1-142	NM_004370	exon54	c.G8222T	p.C2741F	TGTGTACATGTGC	.	176	60	211	0	.	0	0	0	0	0	5
TTK	7272	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	80744821	80744821	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTK-1299	NM_003318	exon15	c.A1734G	p.L578L	TAAACTACAACAA	.	172	73	207	1	.	0	0	0	0	0	4
SNAP91	9892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	84290239	84290239	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SNAP91-23	NM_001242792	exon23	c.C2229A	p.P743P	AGGACTGGGTGGT	.	240	97	262	0	.	0	0	0	0	0	5
TBX18	9096	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	85446831	85446831	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBX18-73	NM_001080508	exon8	c.G1396T	p.V466L	TGTTCACGGAGGT	.	161	58	158	1	.	0	0	0	0	0	3
HTR1E	3354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	87725124	87725124	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HTR1E-93	NM_000865	exon2	c.C72G	p.L24L	GATGCTCATTTGC	.	339	132	300	0	.	0	0	0	0	0	5
RARS2	57038	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	88279286	88279286	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RARS2-92	NM_020320	exon2	c.C59T	p.P20L	TCTGGTGGAAGAT	.	79	11	92	1	.	0	0	0	0	0	3
SRSF12	135295	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	89827555	89827555	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SRSF12-90	NM_080743	exon1	c.G52T	p.A18S	CGTCCGCGACGTT	.	177	69	49	0	.	0	0	0	0	0	4
MAP3K7	6885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	91233443	91233443	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAP3K7-980	NM_145331	exon14	c.A1416T	p.S472S	CTTTTCTGAGGTT	.	150	69	151	0	.	0	0	0	0	0	5
UFL1	23376	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	96999750	96999750	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_015323	exon17	c.G1936T	p.A646S	TCTGCAGCAGAAG	.	196	57	217	1	.	0	0	0	0	0	3
MMS22L	253714	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	97599708	97599708	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MMS22L-92	NM_198468	exon23	c.G3421A	p.V1141I	CTTTTACCATGTA	.	82	20	77	1	.	0	0	0	0	0	4
GRIK2	2898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	102124584	102124584	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRIK2-157	NM_021956	exon4	c.G628C	p.D210H	ACAAAGGATGCAA	.	195	74	196	0	.	0	0	0	0	0	5
SCML4	256380	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	108041954	108041954	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCML4-91	NM_198081	exon6	c.C926T	p.A309V	CTGGAGGCTGGAG	.	75	23	57	1	.	0	0	0	0	0	4
SCML4	256380	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	108068044	108068044	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCML4-91	NM_198081	exon4	c.G336A	p.R112R	CTTCTTCCTCTCC	.	138	42	106	1	.	0	0	0	0	0	3
WISP3	8838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	112375568	112375568	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WISP3-90	NM_198239	exon1	c.G62T	p.G21V	TGCAGGGGCTCCT	.	121	42	107	0	.	0	0	0	0	0	5
HS3ST5	222537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	114378755	114378755	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HS3ST5-92	NM_153612	exon2	c.A707T	p.K236I	AGATGTTTGGTGT	.	139	55	113	0	.	0	0	0	0	0	5
HS3ST5	222537	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	114379130	114379130	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HS3ST5-92	NM_153612	exon2	c.A332C	p.N111T	TGTAGGTTCAGCA	.	99	10	65	0	.	0	0	0	0	0	3
GPRC6A	222545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	117130541	117130541	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPRC6A-96	NM_148963	exon2	c.G434T	p.G145V	CCAGAACCTATGA	.	109	50	85	0	.	0	0	0	0	0	5
ROS1	6098	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	117709087	117709087	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ROS1-1353	NM_002944	exon13	c.C1870T	p.H624Y	AAATATGAGTGAC	.	178	57	132	2	.	0	0	0	0	0	3
C6orf170	221322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	121563361	121563361	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C6orf170-92	NM_152730	exon18	c.G2143T	p.A715S	TTTTTGCATATCG	.	77	21	85	0	.	0	0	0	0	0	5
NKAIN2	154215	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	124979429	124979429	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NKAIN2-23	NM_001040214	exon4	c.C371T	p.P124L	CTGCCCCAGACTG	.	184	75	183	1	.	0	0	0	0	0	3
LAMA2	3908	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	129766860	129766860	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LAMA2-162	NM_000426	exon45	c.G6323T	p.R2108L	CTGACCGGCTAAT	.	132	52	133	1	.	0	0	0	0	0	4
TMEM200A	114801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	130761684	130761684	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM200A-23	NM_001258277	exon3	c.C117G	p.P39P	GAAGCCCATCAGG	.	88	41	116	0	.	0	0	0	0	0	5
TMEM200A	114801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	130762826	130762826	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM200A-23	NM_001258277	exon3	c.C1259A	p.P420H	GTTGGCCTAGGTT	.	73	27	52	0	.	0	0	0	0	0	5
TMEM200A	114801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	130762909	130762909	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM200A-23	NM_001258277	exon3	c.G1342T	p.V448F	CCCCAAGTTGCCA	.	55	22	62	0	.	0	0	0	0	0	5
TAAR5	9038	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	132910041	132910041	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAAR5-91	NM_003967	exon1	c.T785A	p.L262H	CACAAGAGGTATA	.	310	120	269	2	.	0	0	0	0	0	3
TAAR5	9038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	132910108	132910108	+	Missense_Mutation	SNP	G	G	T	rs188569215	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAAR5-91	NM_003967	exon1	c.C718A	p.L240M	CAGCCAGGCTTTT	.	140	55	125	0	G|0.999;A|0.001	0	0	0	0	0	5
VNN1	8876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	133032885	133032885	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VNN1-93	NM_004666	exon2	c.C304T	p.P102S	CTTCAGGGTCTGG	.	114	27	96	0	.	0	0	0	0	0	5
EYA4	2070	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	133836501	133836501	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EYA4-578	NM_172105	exon17	c.G1544T	p.R515M	AGTTAAGGGCAGA	.	111	25	114	1	.	0	0	0	0	0	3
AHI1	54806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	135754223	135754223	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AHI1-227	NM_001134832	exon15	c.G2208T	p.L736F	TCGGACCAATATG	.	189	62	166	0	.	0	0	0	0	0	5
AHI1	54806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	135754324	135754324	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AHI1-227	NM_001134832	exon15	c.G2107T	p.A703S	ATTTAGCCGTGTA	.	89	34	116	0	.	0	0	0	0	0	5
BCLAF1	9774	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	136599766	136599766	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BCLAF1-228	NM_014739	exon4	c.G253T	p.G85X	TACCTCCTCCTCC	.	200	21	147	0	.	0	0	0	0	0	3
TXLNB	167838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	139563758	139563758	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TXLNB-91	NM_153235	exon10	c.C1960A	p.P654T	GTGGGGGCTGCCT	.	105	20	70	0	.	0	0	0	0	0	4
GPR126	57211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	142691775	142691775	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR126-91	NM_198569	exon4	c.G914T	p.G305V	TAAAAGGGGACAT	.	136	51	149	0	.	0	0	0	0	0	5
ADAT2	134637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	143749780	143749780	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAT2-90	NM_182503	exon5	c.A501G	p.L167L	GGTCTTTAACATT	.	89	36	88	0	.	0	0	0	0	0	5
AKAP12	9590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	151672276	151672276	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AKAP12-293	NM_005100	exon4	c.C2750T	p.S917L	CTGCTTCAGTGAC	.	135	27	132	0	.	0	0	0	0	0	5
CCDC170	80129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	151917690	151917690	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_025059	exon9	c.T1688A	p.L563Q	CCAAACTGGCCGA	.	161	51	126	0	.	0	0	0	0	0	5
ESR1	2099	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	152201872	152201872	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ESR1-1042	NM_000125	exon3	c.C726G	p.L242L	CCGGCTCCGTAAA	.	84	33	73	1	.	0	0	0	0	0	4
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	152647669	152647669	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SYNE1-607	NM_182961	exon79	c.15055delG	p.A5019fs	TGCCTGCCAGCTG	.	126	33	115	0	.	0	0	0	0	0	3
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	152737529	152737529	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SYNE1-607	NM_033071	exon41	c.C6064T	p.Q2022X	TCTGCTGAAGAGC	.	34	11	40	0	.	0	0	0	0	0	5
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	152793441	152793441	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SYNE1-607	NM_033071	exon15	c.C1479G	p.A493A	CCTCTCGGCCATG	.	112	35	92	0	.	0	0	0	0	0	5
MYCT1	80177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	153042879	153042879	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYCT1-91	NM_025107	exon2	c.G199T	p.D67Y	TCAGAGGACCTTA	.	62	30	46	0	.	0	0	0	0	0	5
IPCEF1	26034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	154587053	154587053	+	Missense_Mutation	SNP	C	C	A	rs139019503	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IPCEF1-90	NM_001130699	exon4	c.G29T	p.S10I	AGAGCACTGCCAT	.	119	44	120	0	C|1.000;T|0.000	0	0	0	0	0	5
TIAM2	26230	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	155450837	155450837	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TIAM2-93	NM_012454	exon3	c.A480T	p.R160R	CCCCCGAGTGCTC	.	60	20	62	1	.	0	0	0	0	0	3
TIAM2	26230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155458506	155458506	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TIAM2-93	NM_012454	exon4	c.C1390G	p.R464G	TTCATGCGAGAGT	.	120	36	130	0	.	0	0	0	0	0	5
NOX3	50508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155764494	155764494	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOX3-91	NM_015718	exon5	c.G399T	p.E133D	GGCCTCCTCGGAC	.	218	85	189	0	.	0	0	0	0	0	5
ARID1B	57492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	157505500	157505500	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARID1B-154	NM_020732	exon13	c.G3481T	p.E1161X	GGGGAGGAGCCCC	.	187	75	141	0	.	0	0	0	0	0	5
RSPH3	83861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159401950	159401950	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RSPH3-92	NM_031924	exon6	c.C1141T	p.Q381X	CCCACTGCTGTTT	.	156	47	124	0	.	0	0	0	0	0	5
FNDC1	84624	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159646610	159646610	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FNDC1-138	NM_032532	exon8	c.T928A	p.W310R	GCCAGGTGGGATT	.	193	66	154	2	.	0	0	0	0	0	4
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	160468850	160468850	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGF2R-118	NM_000876	exon17	c.2256delC	p.F752fs	CAACTTCCGGTGG	.	123	39	100	0	.	0	0	0	0	0	3
IGF2R	3482	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	6	160468852	160468852	+	Missense_Mutation	SNP	G	G	T	rs141234361	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGF2R-118	NM_000876	exon17	c.G2258T	p.R753L	ACTTCCGGTGGTA	.	121	40	100	0	G|1.000;A|0.000	0	0	0	0	0	3
PLG	5340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	161134147	161134147	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLG-94	NM_000301	exon5	c.T537A	p.L179L	CATTCTTGAGTGT	.	137	46	100	0	.	0	0	0	0	0	5
PDE10A	10846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	165801852	165801852	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDE10A-519	NM_001130690	exon17	c.G1747T	p.A583S	GAGCGGCCAGAGG	.	177	55	130	0	.	0	0	0	0	0	5
T	6862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	166580287	166580287	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	T-516	NM_003181	exon3	c.C264A	p.Y88X	GAAGGAGTACATG	.	225	81	135	0	.	0	0	0	0	0	5
UNC93A	54346	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167721323	167721323	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UNC93A-90	NM_018974	exon7	c.G1033T	p.D345Y	CGTGCTGACCATC	.	204	70	186	1	.	0	0	0	0	0	4
TTLL2	83887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167755029	167755029	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTLL2-92	NM_031949	exon3	c.A1641T	p.K547N	TGGCAAAGCTCCA	.	165	54	113	0	.	0	0	0	0	0	5
KIF25	3834	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	168442775	168442775	+	Missense_Mutation	SNP	C	C	T	rs138311357	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF25-92	NM_030615	exon7	c.C773T	p.A258V	GGCATGCGGAGCA	.	219	33	182	1	C|0.999;A|0.001	0	0	0	0	0	3
THBS2	7058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	169629675	169629675	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	THBS2-95	NM_003247	exon15	c.G2251T	p.D751Y	TCTCATCGGTCAC	.	97	31	69	0	.	0	0	0	0	0	5
MAD1L1	8379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	1976421	1976421	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAD1L1-1083	NM_003550	exon17	c.G1709T	p.R570L	CGCAGTCGCTCGC	.	117	40	18	0	.	0	0	0	0	0	5
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2976779	2976779	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CARD11-870	NM_032415	exon9	c.G1233T	p.E411D	CTTCTCCTCCAGC	.	145	40	157	0	.	0	0	0	0	0	5
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	2978414	2978414	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CARD11-870	NM_032415	exon7	c.G916C	p.E306Q	CGTGTTCCAAGAT	.	75	13	61	0	.	0	0	0	0	0	4
TNRC18	84629	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	5401321	5401321	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNRC18-46	NM_001080495	exon14	c.C4565T	p.A1522V	CTGCGTGCCAAGC	.	73	18	12	0	.	0	0	0	0	0	4
GRID2IP	392862	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	6554007	6554007	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145118	exon8	c.A1422T	p.T474T	CTTACCTGTCATG	.	27	11	46	0	.	0	0	0	0	0	4
GRID2IP	392862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	6561558	6561558	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145118	exon5	c.C950A	p.S317X	TCACCTGACTTGA	.	104	30	95	0	.	0	0	0	0	0	5
THSD7A	221981	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	11419313	11419313	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	THSD7A-71	NM_015204	exon24	c.G4534A	p.D1512N	CGGCATCAGGCTG	.	86	21	127	0	.	0	0	0	0	0	4
THSD7A	221981	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	11581087	11581087	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	THSD7A-71	NM_015204	exon6	c.C1781G	p.P594R	GTGCCTGGACCAC	.	216	51	264	1	.	0	0	0	0	0	4
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	11676331	11676331	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	THSD7A-71	NM_015204	exon2	c.448delG	p.E150fs	CTTCTTCCCCCTT	.	71	13	147	0	.	0	0	0	0	0	3
VWDE	221806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	12396973	12396973	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VWDE-68	NM_001135924	exon17	c.G3443C	p.W1148S	GTTTTCCACATAA	.	64	21	54	0	.	0	0	0	0	0	5
VWDE	221806	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	12409933	12409933	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VWDE-68	NM_001135924	exon12	c.G1999A	p.V667I	AGGTGACATCTAG	.	35	6	63	0	.	0	0	0	0	0	3
DGKB	1607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	14661070	14661070	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DGKB-276	NM_145695	exon14	c.A1220T	p.N407I	ACTTTGTTTGGCT	.	34	9	61	0	.	0	0	0	0	0	4
DGKB	1607	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	14775769	14775769	+	Silent	SNP	G	G	T	rs10238323	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DGKB-276	NM_145695	exon4	c.C219A	p.A73A	AAGCTCGGCTTCC	.	104	22	146	0	G|0.984;A|0.016	0	0	0	0	0	4
TMEM196	256130	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	19765212	19765212	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM196-22	NM_152774	exon3	c.A384T	p.L128L	ACTGGCTAGTCGA	.	153	49	220	1	.	0	0	0	0	0	3
ITGB8	3696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20444293	20444293	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITGB8-227	NM_002214	exon11	c.G1730C	p.G577A	TCAGTGGCTGGGA	.	152	36	223	0	.	0	0	0	0	0	5
SP8	221833	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	20824578	20824578	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SP8-91	NM_182700	exon2	c.C858T	p.S286S	GTGCGAGGAGGCG	.	30	6	32	0	.	0	0	0	0	0	3
DNAH11	8701	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	21789958	21789958	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH11-146	.	.	.	.	CTTTATGGCCAGG	.	60	11	85	0	.	0	0	0	0	0	3
DFNA5	1687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	24789190	24789190	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DFNA5-91	NM_001127453	exon2	c.G204T	p.P68P	TGGACTCGGAAAT	.	32	7	42	0	.	0	0	0	0	0	4
C7orf31	136895	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	25182373	25182373	+	Missense_Mutation	SNP	C	C	G	rs17150982	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C7orf31-90	NM_138811	exon8	c.G745C	p.A249P	TAGGAGCGAAGGT	.	58	17	71	0	C|0.971;T|0.029	0	0	0	0	0	4
HOXA3	3200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	27148164	27148164	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HOXA3-153	NM_030661	exon3	c.G702T	p.Q234H	CTTGATCTGGCGC	.	93	17	134	1	.	0	0	0	0	0	3
EVX1	2128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	27283071	27283071	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EVX1-91	NM_001989	exon1	c.G422A	p.S141N	AGCACAGCAAAGG	.	72	15	78	0	.	0	0	0	0	0	5
CREB5	9586	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	28610012	28610012	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CREB5-92	NM_182898	exon5	c.G321T	p.G107G	TGGTGGGGCCATG	.	203	72	290	2	.	0	0	0	0	0	4
NEUROD6	63974	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	31377995	31377995	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NEUROD6-92	NM_022728	exon2	c.888delC	p.P296fs	ACCCCTGGGTGGC	.	101	22	135	0	.	0	0	0	0	0	3
BMPER	168667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	34006114	34006114	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BMPER-92	NM_133468	exon5	c.T343C	p.Y115H	AATACCTATAACA	.	50	11	107	0	.	0	0	0	0	0	4
BMPER	168667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	34125628	34125628	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BMPER-92	NM_133468	exon14	c.C1669A	p.H557N	CGGGCCCATCGAG	.	117	20	172	0	.	0	0	0	0	0	5
AOAH	313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	36726385	36726385	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AOAH-91	NM_001637	exon2	c.G142T	p.V48L	CAGACACCACCAG	.	137	48	151	0	.	0	0	0	0	0	5
ELMO1	9844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	37298802	37298802	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ELMO1-96	NM_014800	exon6	c.G397T	p.V133L	TCTCCACCATCTG	.	84	29	115	0	.	0	0	0	0	0	5
POU6F2	11281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	39379343	39379343	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POU6F2-90	NM_007252	exon6	c.C614A	p.P205Q	AGCACCCGCAACC	.	23	6	12	0	.	0	0	0	0	0	3
INHBA	3624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	41739811	41739811	+	Missense_Mutation	SNP	C	C	A	rs140132631	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	INHBA-703	NM_002192	exon2	c.G162T	p.M54I	CTCCACCATCTCT	.	42	15	87	0	C|1.000;A|0.000	0	0	0	0	0	4
RAMP3	10268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45222995	45222995	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAMP3-90	NM_005856	exon3	c.C431G	p.T144S	AACGCACCGACAC	.	100	29	109	0	.	0	0	0	0	0	5
ADCY1	107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45753294	45753294	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADCY1-95	NM_021116	exon20	c.G3060T	p.V1020V	ACAGGTGACTGAG	.	140	43	185	0	.	0	0	0	0	0	5
IGFBP1	3484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45932578	45932578	+	Missense_Mutation	SNP	G	G	T	rs201339143	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGFBP1-946	NM_000596	exon4	c.G668T	p.G223V	TGGATGGAGAGGC	.	53	15	53	0	.	0	0	0	0	0	5
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48314688	48314688	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCA13-521	NM_152701	exon17	c.C5425G	p.P1809A	GATAAGCCAGATA	.	34	14	74	0	.	0	0	0	0	0	5
IKZF1	10320	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	50468109	50468109	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IKZF1-1242	NM_006060	exon8	c.G1344C	p.A448A	GGACGCGCTCCGC	.	148	36	104	1	.	0	0	0	0	0	4
COBL	23242	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	51092894	51092894	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COBL-95	NM_015198	exon12	c.G3680T	p.S1227I	CCCGTGCTGAACC	.	84	24	90	0	.	0	0	0	0	0	4
COBL	23242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	51111286	51111286	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COBL-95	NM_015198	exon8	c.G1200T	p.S400S	GTCCTCCGACGCA	.	79	33	108	0	.	0	0	0	0	0	5
VSTM2A	222008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	54617625	54617625	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_182546	exon4	c.C396G	p.A132A	TGATGCCAACTAC	.	166	46	216	0	.	0	0	0	0	0	5
LANCL2	55915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	55479679	55479679	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LANCL2-516	NM_018697	exon6	c.G905T	p.R302L	AATTCCGATCTGG	.	157	53	130	0	.	0	0	0	0	0	5
CCT6A	908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	56128072	56128072	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCT6A-91	NM_001762	exon10	c.G1176T	p.R392S	AGTGAGGGACGGC	.	120	31	168	0	.	0	0	0	0	0	5
CALN1	83698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	71571250	71571250	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CALN1-91	NM_031468	exon4	c.C274A	p.R92R	CATCCCGGTCCAG	.	96	43	94	0	.	0	0	0	0	0	5
MDH2	4191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	75689773	75689773	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MDH2-228	NM_005918	exon5	c.C512T	p.T171I	TGACGACCCTGGA	.	202	69	168	0	.	0	0	0	0	0	5
MAGI2	9863	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	78131056	78131056	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAGI2-461	NM_012301	exon5	c.C803A	p.P268H	TGGGAGGGCATCT	.	107	33	85	1	.	0	0	0	0	0	3
MAGI2	9863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	78131057	78131057	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAGI2-461	NM_012301	exon5	c.C802A	p.P268T	GGGAGGGCATCTC	.	105	32	82	0	.	0	0	0	0	0	4
SEMA3D	223117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	84628911	84628911	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEMA3D-138	NM_152754	exon17	c.C2179A	p.L727I	GGTCGAGGCTGAA	.	221	76	216	0	.	0	0	0	0	0	5
SEMA3D	223117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	84644451	84644451	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEMA3D-138	NM_152754	exon14	c.G1627T	p.D543Y	AACAGTCTGCGCA	.	205	81	213	0	.	0	0	0	0	0	5
SEMA3D	223117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	84644491	84644491	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEMA3D-138	NM_152754	exon14	c.C1587A	p.L529L	CAAGGAGAGCTGA	.	197	72	206	0	.	0	0	0	0	0	5
GRM3	2913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86394645	86394645	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRM3-528	NM_000840	exon2	c.G184A	p.E62K	ATCAATGAAGACC	.	185	37	156	0	.	0	0	0	0	0	5
ABCB4	5244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	87082308	87082308	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCB4-96	NM_018850	exon6	c.G488T	p.G163V	AACCATCCTATTT	.	97	29	116	0	.	0	0	0	0	0	5
ABCB1	5243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	87138732	87138732	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCB1-582	NM_000927	exon27	c.G3348T	p.V1116V	CTGGGACACGATG	.	157	24	149	0	.	0	0	0	0	0	4
DBF4	10926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	87526653	87526653	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DBF4-253	NM_006716	exon8	c.C679A	p.Q227K	ATGAGCCAGTAAG	.	71	20	72	0	.	0	0	0	0	0	5
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	88963902	88963902	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF804B-101	NM_181646	exon4	c.C1606T	p.P536S	CCGAAACCAAAGA	.	117	32	141	0	.	0	0	0	0	0	5
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	88966065	88966065	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF804B-101	NM_181646	exon4	c.C3769A	p.P1257T	ATTATCCCTGCAC	.	129	50	119	0	.	0	0	0	0	0	5
SAMD9	54809	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92732074	92732074	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SAMD9-140	NM_001193307	exon2	c.G3337A	p.E1113K	CAGGTTCTATGAT	.	103	24	99	1	.	0	0	0	0	0	4
SAMD9L	219285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	92763958	92763958	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SAMD9L-94	NM_152703	exon5	c.G1327T	p.V443L	CCAACACAGCAAA	.	38	11	44	0	.	0	0	0	0	0	4
CALCR	799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	93073002	93073002	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CALCR-664	NM_001164737	exon11	c.G818T	p.C273F	CCTTCACAGAGCA	.	158	62	129	0	.	0	0	0	0	0	5
SHFM1	7979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	96324204	96324204	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SHFM1-227	NM_006304	exon3	c.77-1G>T	.	CCCAGTCTAAAAA	.	48	22	51	0	.	0	0	0	0	0	5
BAIAP2L1	55971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	97944819	97944819	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BAIAP2L1-91	NM_018842	exon7	c.G592T	p.D198Y	GCTTATCAACCAG	.	116	34	99	0	.	0	0	0	0	0	5
ZKSCAN5	23660	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99129205	99129205	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZKSCAN5-91	NM_145102	exon7	c.1853delC	p.S618fs	TGAGGTCCCACCT	.	322	90	169	0	.	0	0	0	0	0	3
ZNF655	79027	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99169990	99169990	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF655-91	NM_001085368	exon4	c.A364G	p.R122G	GAGACTAGAGAAG	.	90	5	57	0	.	0	0	0	0	0	3
MYL10	93408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	101259519	101259519	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYL10-136	NM_138403	exon6	c.G514T	p.G172C	CGAAACCTTTCCC	.	173	55	157	0	.	0	0	0	0	0	5
CUX1	1523	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	101844740	101844740	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CUX1-160	NM_001202543	exon18	c.G2196T	p.Q732H	CCAGCAGGCTGCC	.	260	95	167	1	.	0	0	0	0	0	3
RELN	5649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	103163855	103163855	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RELN-574	NM_173054	exon47	c.C7473G	p.C2491W	CTGGATGCATCTC	.	139	42	144	0	.	0	0	0	0	0	5
RELN	5649	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	103193993	103193993	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RELN-574	NM_173054	exon40	c.T5987C	p.M1996T	AACACCATAGCTG	.	123	36	105	1	.	0	0	0	0	0	4
PIK3CG	5294	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	106509035	106509035	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIK3CG-1316	NM_002649	exon2	c.C1029A	p.G343G	CCACGGCAAGGAC	.	289	106	245	1	.	0	0	0	0	0	3
SLC26A3	1811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107431510	107431510	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC26A3-94	NM_000111	exon5	c.C553G	p.L185V	CAGAAAGCACTGT	.	239	79	206	0	.	0	0	0	0	0	5
LAMB4	22798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107684339	107684339	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LAMB4-140	NM_007356	exon29	c.C4329A	p.I1443I	ACTTTCGATCTGG	.	36	11	28	0	.	0	0	0	0	0	5
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107816985	107816985	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NRCAM-156	NM_001037132	exon24	c.C3041A	p.T1014N	TTTAAAGTCCACC	.	62	21	51	0	.	0	0	0	0	0	5
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107880406	107880406	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NRCAM-156	NM_001037132	exon1	c.G103T	p.D35Y	TACGATCAAGAGG	.	72	24	82	0	.	0	0	0	0	0	5
PNPLA8	50640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	108119816	108119816	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PNPLA8-135	NM_001256008	exon9	c.G1886T	p.G629V	AGCAAACCTCCAT	.	85	24	70	0	.	0	0	0	0	0	5
FOXP2	93986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	114294061	114294061	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FOXP2-295	NM_001172767	exon10	c.A1338T	p.K446N	TCCCAAACCTGTA	.	66	20	51	0	.	0	0	0	0	0	5
ASZ1	136991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	117062373	117062373	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASZ1-515	NM_130768	exon3	c.C246T	p.P82P	CATAAGGGGAGTC	.	106	41	90	0	.	0	0	0	0	0	5
ANKRD7	56311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	117864956	117864956	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD7-90	NM_019644	exon1	c.G72T	p.K24N	AGAAAAGGATTTA	.	302	101	243	0	.	0	0	0	0	0	5
KCND2	3751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	119914836	119914836	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCND2-517	NM_012281	exon1	c.C150A	p.T50T	TGGCACCCGCTTC	.	177	62	169	0	.	0	0	0	0	0	5
CPED1	79974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	120770181	120770181	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001105533	exon11	c.C1410A	p.L470L	TCAGCTCTTCCCA	.	82	25	62	0	.	0	0	0	0	0	5
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	121624143	121624143	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPRZ1-699	NM_001206838	exon8	c.C900G	p.Y300X	CTCATACACTGGA	.	65	21	47	0	.	0	0	0	0	0	5
SLC13A1	6561	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	122757584	122757584	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC13A1-92	NM_022444	exon14	c.G1591T	p.V531L	TTGCTACTGGTAG	.	261	109	235	1	.	0	0	0	0	0	3
ASB15	142685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123270074	123270074	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASB15-228	NM_080928	exon9	c.C1495A	p.R499S	GTTACTCGTGTAC	.	102	30	89	0	.	0	0	0	0	0	5
GRM8	2918	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	126544129	126544129	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRM8-581	NM_000845	exon4	c.G915T	p.W305C	GCCAATCCAGAGA	.	185	84	179	2	.	0	0	0	0	0	3
GRM8	2918	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	126882813	126882813	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRM8-581	NM_000845	exon1	c.G446T	p.G149V	ATGACGCCAGAAA	.	259	109	194	1	.	0	0	0	0	0	3
PAX4	5078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127253093	127253093	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAX4-227	NM_006193	exon6	c.G674T	p.W225L	ATTTCCCACTTGA	.	196	68	167	0	.	0	0	0	0	0	5
PAX4	5078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127253928	127253928	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAX4-227	NM_006193	exon4	c.G420T	p.L140F	TGGAGCCAAAACA	.	90	22	62	0	.	0	0	0	0	0	5
FAM71F2	346653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128315858	128315858	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001012454	exon2	c.G310T	p.G104C	CCCCAGGGTCCAT	.	56	26	47	0	.	0	0	0	0	0	5
SMO	6608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128845593	128845593	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMO-2451	NM_005631	exon4	c.C890T	p.A297V	GCCGTGCAGATGG	.	85	33	37	0	.	0	0	0	0	0	5
SMO	6608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128846172	128846172	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMO-2451	NM_005631	exon5	c.C1102G	p.P368A	TCACTCCCCTTTG	.	202	79	166	0	.	0	0	0	0	0	5
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	131865384	131865384	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLXNA4-91	NM_020911	exon19	c.C3600A	p.L1200L	CTCGCAGAGCAGC	.	194	76	147	0	.	0	0	0	0	0	5
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	131912280	131912280	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLXNA4-91	NM_020911	exon7	c.G1812C	p.L604L	CACGACCAGCCCA	.	244	86	213	0	.	0	0	0	0	0	5
CNOT4	4850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135082955	135082955	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNOT4-90	NM_001190850	exon8	c.C845G	p.S282C	CTGAGAGAATCTG	.	62	24	41	0	.	0	0	0	0	0	5
PTN	5764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	136912824	136912824	+	Splice_Site	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTN-516	NM_002825	exon6	c.452-2A>T	.	TTCTGCTGTGATT	.	17	7	10	0	.	0	0	0	0	0	3
SVOPL	136306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138363243	138363243	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SVOPL-68	NM_001139456	exon2	c.C110T	p.A37V	TCCACTGCATCTT	.	99	36	81	0	.	0	0	0	0	0	5
JHDM1D	80853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139791751	139791751	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	JHDM1D-91	NM_030647	exon19	c.T2584G	p.S862A	GGTTTGAATTCTG	.	219	73	176	0	.	0	0	0	0	0	5
JHDM1D	80853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	139810956	139810956	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	JHDM1D-91	NM_030647	exon11	c.C1367T	p.P456L	TTGTCTGGAATTT	.	67	10	35	0	.	0	0	0	0	0	4
DENND2A	27147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	140246647	140246647	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DENND2A-138	NM_015689	exon11	c.G2130T	p.L710L	TTTGCCCAGGGCT	.	285	77	193	0	.	0	0	0	0	0	5
TAS2R3	50831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141464522	141464522	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAS2R3-90	NM_016943	exon1	c.G564T	p.W188C	TCTGTGGTACCTG	.	325	88	169	0	.	0	0	0	0	0	5
TAS2R38	5726	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141672602	141672602	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAS2R38-92	NM_176817	exon1	c.C888A	p.I296I	GATCAGGATGGCT	.	234	56	143	2	.	0	0	0	0	0	3
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141805635	141805635	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MGAM-70	NM_004668	exon48	c.G5518A	p.D1840N	GTGACTGACAGAA	.	153	30	94	0	.	0	0	0	0	0	5
PRSS58	136541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141955029	141955029	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRSS58-24	NM_001001317	exon4	c.A282T	p.S94S	AGTGACTGAGAAG	.	234	59	122	0	.	0	0	0	0	0	5
TRPV5	56302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142606676	142606676	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPV5-177	NM_019841	exon14	c.G1875T	p.L625L	GTCCCCCAGCCCG	.	126	38	104	0	.	0	0	0	0	0	5
KEL	3792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142638380	142638380	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KEL-93	NM_000420	exon19	c.G2158T	p.G720C	GAGCACCACGTGC	.	156	51	114	0	.	0	0	0	0	0	5
KEL	3792	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142640676	142640676	+	Missense_Mutation	SNP	C	C	A	rs150678405	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KEL-93	NM_000420	exon15	c.G1600T	p.V534L	GGGACACCTTCCA	.	184	53	125	1	C|1.000;T|0.000	0	0	0	0	0	4
OR9A2	135924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142723927	142723927	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR9A2-69	NM_001001658	exon1	c.C293A	p.S98X	TTGAGCGATACAT	.	392	95	250	0	.	0	0	0	0	0	5
OR6V1	346517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	142749491	142749491	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR6V1-23	NM_001001667	exon1	c.T54C	p.F18F	CTCCTTTGGTGAG	.	173	21	135	0	.	0	0	0	0	0	4
PIP	5304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142836633	142836633	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIP-91	NM_002652	exon4	c.C339A	p.V113V	AGCCGTCGTTGAT	.	162	36	108	0	.	0	0	0	0	0	5
OR2F1	26211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143657461	143657461	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2F1-71	NM_012369	exon1	c.C398A	p.S133X	GATACTCGGCCAT	.	429	226	273	0	.	0	0	0	0	0	5
OR2A14	135941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143826651	143826651	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2A14-90	NM_001001659	exon1	c.T446A	p.V149E	CCTGGGTGTTCAG	.	232	64	150	0	.	0	0	0	0	0	5
NOBOX	135935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	144098647	144098647	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOBOX-69	NM_001080413	exon4	c.G336A	p.E112E	TTCCTCCTCCCCG	.	32	8	20	0	.	0	0	0	0	0	4
CNTNAP2	26047	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	145813997	145813997	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTNAP2-100	NM_014141	exon1	c.G29C	p.G10A	GCTGCGGGGCAGC	.	71	26	27	0	.	0	0	0	0	0	4
ZNF467	168544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149466284	149466284	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF467-90	NM_207336	exon4	c.G157T	p.E53X	GGGCCTCGTGCCC	.	101	36	71	0	.	0	0	0	0	0	5
SSPO	23145	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	149486861	149486861	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_198455	exon31	c.C4635A	p.S1545S	CCCCTCCCCAGGC	.	148	47	116	1	.	0	0	0	0	0	3
SLC4A2	6522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150771826	150771826	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC4A2-90	NM_003040	exon19	c.C2945T	p.P982L	TCAACCCCCTGGG	.	148	51	131	0	.	0	0	0	0	0	5
SMARCD3	6604	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	150972338	150972338	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMARCD3-228	.	.	.	.	GAGGATCTGAAAG	.	98	33	46	0	.	0	0	0	0	0	3
PRKAG2	51422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151478357	151478357	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRKAG2-658	NM_016203	exon3	c.G347C	p.R116P	GGGGAGCGTGGCG	.	63	22	55	0	.	0	0	0	0	0	5
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151947965	151947965	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLL3-1398	NM_170606	exon12	c.G1708T	p.E570X	TGGACTCCTGACC	.	57	26	50	0	.	0	0	0	0	0	5
DPP6	1804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	153584820	153584820	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DPP6-652	NM_001039350	exon1	c.51+1G>T	.	GTGATGGTGAGTG	.	144	19	111	0	.	0	0	0	0	0	4
DPP6	1804	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	7	153749961	153749961	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DPP6-652	NM_130797	exon1	c.C56A	p.P19H	CCTTCCCCGCGCC	.	23	11	16	0	.	0	0	0	0	0	3
DPP6	1804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	154561206	154561206	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DPP6-652	NM_130797	exon9	c.C963T	p.S321S	TGATTCCCGTGTC	.	170	66	91	0	.	0	0	0	0	0	5
DPP6	1804	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	154598776	154598776	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DPP6-652	NM_130797	exon16	c.C1620A	p.S540R	CTTCAGCGCTTCC	.	95	29	76	1	.	0	0	0	0	0	4
NOM1	64434	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	156743069	156743069	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOM1-90	NM_138400	exon1	c.G638T	p.R213L	TTGCACGCGACGG	.	157	66	141	1	.	0	0	0	0	0	4
DLGAP2	9228	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	1497807	1497807	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DLGAP2-22	NM_004745	exon2	c.C948A	p.H316Q	GCTGCACCAGGAC	.	154	90	89	2	.	0	0	0	0	0	4
DLGAP2	9228	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	1626470	1626470	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DLGAP2-22	NM_004745	exon9	c.G2139T	p.E713D	CACGGAGGACAAA	.	192	31	161	1	.	0	0	0	0	0	3
MYOM2	9172	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2054093	2054093	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYOM2-95	NM_003970	exon22	c.C2796A	p.C932X	CGACTGCCAGGAA	.	167	38	237	1	.	0	0	0	0	0	4
MYOM2	9172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2090321	2090321	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYOM2-95	NM_003970	exon35	c.G4023T	p.K1341N	AGAGAAGAGTAAG	.	117	31	136	0	.	0	0	0	0	0	5
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	2800005	2800005	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSMD1-86	NM_033225	exon69	c.C10524A	p.L3508L	TTTGTAGAGGTAA	.	32	8	69	0	.	0	0	0	0	0	4
CSMD1	64478	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2855623	2855623	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSMD1-86	NM_033225	exon54	c.A8287T	p.T2763S	TGCAGGTGAAATT	.	165	44	219	2	.	0	0	0	0	0	4
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2910065	2910065	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSMD1-86	NM_033225	exon50	c.C7579A	p.L2527I	ATTCAAGCTTGAA	.	117	24	160	0	.	0	0	0	0	0	5
CSMD1	64478	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	3216806	3216806	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSMD1-86	NM_033225	exon21	c.G3172C	p.G1058R	GAAAACCAATTCT	.	85	11	129	1	.	0	0	0	0	0	3
AGPAT5	55326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	6599206	6599206	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AGPAT5-90	NM_018361	exon5	c.G520A	p.G174S	CCAGAAGGTACAA	.	55	21	76	0	.	0	0	0	0	0	5
XKR5	389610	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	6669732	6669732	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	XKR5-90	NM_207411	exon8	c.G1048T	p.A350S	CTGTGGCCCGGGG	.	55	18	65	0	.	0	0	0	0	0	3
TNKS	8658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	9620743	9620743	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNKS-660	NM_003747	exon22	c.G3361T	p.V1121L	CAGTCAGTGGAAG	.	47	24	25	0	.	0	0	0	0	0	5
PRSS55	203074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10389053	10389053	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRSS55-91	NM_001197020	exon3	c.C596G	p.A199G	CCAATGCTGGTAT	.	62	30	62	0	.	0	0	0	0	0	5
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	10467199	10467199	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RP1L1-139	NM_178857	exon4	c.4409delG	p.G1470fs	TGGGAGCCACTCT	.	60	19	30	0	.	0	0	0	0	0	3
GATA4	2626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	11607705	11607705	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GATA4-90	NM_002052	exon4	c.C869A	p.P290H	GCGAGCCTGTGTG	.	78	9	46	0	.	0	0	0	0	0	4
USP17L2	377630	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	11996101	11996101	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP17L2-435	NM_201402	exon1	c.C169A	p.P57T	CCACAGGAGCCAA	.	66	12	65	2	.	0	0	0	0	0	3
KIAA1456	57604	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	12878570	12878570	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1456-90	NM_020844	exon5	c.G382A	p.A128T	GAAATGGCCAGGG	.	136	22	111	1	.	0	0	0	0	0	3
PCM1	5108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	17796410	17796410	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCM1-742	NM_006197	exon5	c.A504T	p.S168S	TGGATCAGCACAG	.	115	33	160	0	.	0	0	0	0	0	5
NAT2	10	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	18258377	18258377	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NAT2-516	NM_000015	exon2	c.T864A	p.L288L	ATCCCTTACTATT	.	30	8	33	0	.	0	0	0	0	0	4
DOK2	9046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	21769421	21769421	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DOK2-226	NM_003974	exon3	c.G424A	p.A142T	TGACTGCGCTGCT	.	39	9	51	0	.	0	0	0	0	0	4
XPO7	23039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	21842176	21842176	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	XPO7-273	NM_015024	exon12	c.C1297G	p.L433V	GATCCCCTGGAGG	.	41	14	47	0	.	0	0	0	0	0	5
PIWIL2	55124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22147806	22147806	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIWIL2-91	NM_001135721	exon10	c.G1128T	p.L376L	CTTCCTGCTAGCT	.	121	40	117	0	.	0	0	0	0	0	5
LOXL2	4017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	23179795	23179795	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LOXL2-272	NM_002318	exon8	c.1151-1G>A	.	CGATCCCTGCAAG	.	111	33	115	0	.	0	0	0	0	0	5
NKX3-1	4824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	23538992	23538992	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NKX3-1-90	NM_006167	exon2	c.G447T	p.L149L	GGCCGACAGGTAC	.	64	21	81	0	.	0	0	0	0	0	5
NKX2-6	137814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	23560030	23560030	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NKX2-6-68	NM_001136271	exon2	c.C840A	p.H280Q	GCCACCGTGTCCG	.	68	19	16	0	.	0	0	0	0	0	5
DOCK5	80005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	25101270	25101270	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DOCK5-71	NM_024940	exon2	c.G124T	p.E42X	ATGTACGAGGGTA	.	55	18	41	0	.	0	0	0	0	0	5
SCARA3	51435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	27516983	27516983	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCARA3-228	NM_182826	exon5	c.C1296T	p.S432S	CCTCTCCATGATC	.	93	17	107	0	.	0	0	0	0	0	5
ESCO2	157570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	27646479	27646479	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ESCO2-90	NM_001017420	exon7	c.A1247T	p.E416V	TTCTGGAAGGAAT	.	59	17	83	0	.	0	0	0	0	0	5
SCARA5	286133	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	27779158	27779158	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCARA5-91	NM_173833	exon4	c.G846T	p.A282A	GGTGACCGCGTTG	.	213	61	127	1	.	0	0	0	0	0	4
NUGGC	389643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	27898604	27898604	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001010906	exon13	c.G1575T	p.R525S	AGAAGTCCTGGCG	.	68	23	100	0	.	0	0	0	0	0	5
PURG	29942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	30889911	30889911	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PURG-131	NM_013357	exon1	c.G388T	p.G130C	TCAGGCCCAGGTG	.	39	16	101	0	.	0	0	0	0	0	5
PPAPDC1B	84513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	38123741	38123741	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_032483	exon6	c.G552T	p.R184S	ACAGAACCTCCAA	.	333	58	403	0	.	0	0	0	0	0	5
ADAM9	8754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	38880770	38880770	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAM9-227	NM_003816	exon9	c.G840T	p.V280V	TGATGTGCTGGGG	.	184	81	130	0	.	0	0	0	0	0	5
KAT6A	7994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	41790513	41790513	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001099412	exon18	c.G5225A	p.G1742D	TAGCTGCCGGCAC	.	92	37	126	0	.	0	0	0	0	0	5
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	52233364	52233364	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PXDNL-70	NM_144651	exon22	c.T4240G	p.C1414G	GAGTGCAGTCTTC	.	104	52	69	0	.	0	0	0	0	0	4
PXDNL	137902	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	52284587	52284587	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PXDNL-70	NM_144651	exon19	c.G3747T	p.K1249N	CGCCTGCTTCAGC	.	124	63	98	1	.	0	0	0	0	0	3
RP1	6101	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	55537620	55537620	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RP1-102	NM_006269	exon4	c.C1178A	p.P393H	TGTCACCTATGGA	.	216	62	198	2	.	0	0	0	0	0	3
XKR4	114786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	56435991	56435991	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	XKR4-92	NM_052898	exon3	c.G1158T	p.R386S	CGCCAGGGTCATC	.	270	115	186	0	.	0	0	0	0	0	5
TOX	9760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	59750748	59750748	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TOX-227	NM_014729	exon5	c.T816A	p.F272L	ATCACGAAAGAAT	.	164	73	136	0	.	0	0	0	0	0	5
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61654436	61654436	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHD7-141	NM_017780	exon2	c.G445T	p.A149S	CCCAGGGCTGTTC	.	231	116	129	0	.	0	0	0	0	0	5
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61765660	61765660	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHD7-141	NM_017780	exon31	c.G6376C	p.D2126H	TTCTTGGATGCAC	.	249	110	181	0	.	0	0	0	0	0	5
YTHDF3	253943	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	64099049	64099049	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	.	.	.	.	ACCTAGTTCTCTT	.	262	84	185	0	.	0	0	0	0	0	4
VCPIP1	80124	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	67576973	67576973	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VCPIP1-662	NM_025054	exon1	c.G2221T	p.G741W	GTTGCCCTTTTTG	.	179	38	131	1	.	0	0	0	0	0	4
PPP1R42	286187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	67926709	67926709	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001013626	exon3	c.G248C	p.C83S	GAAATACAATTGT	.	81	25	53	0	.	0	0	0	0	0	5
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	69069640	69069640	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PREX2-390	NM_024870	exon35	c.G4315T	p.E1439X	TCACTGGAAAAGG	.	295	94	208	0	.	0	0	0	0	0	5
PRDM14	63978	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	70981760	70981760	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRDM14-93	NM_024504	exon2	c.G336T	p.P112P	GAAGGGCGGCACT	.	98	27	70	1	.	0	0	0	0	0	3
NCOA2	10499	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	71036168	71036168	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NCOA2-639	NM_006540	exon21	c.C4244T	p.S1415L	GTCACTGAGGTCA	.	323	43	206	2	.	0	0	0	0	0	3
KCNB2	9312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	73480116	73480116	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNB2-158	NM_004770	exon2	c.G147T	p.L49L	AGTCCTGTGGAGA	.	199	59	168	0	.	0	0	0	0	0	5
KCNB2	9312	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	73849028	73849028	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNB2-158	NM_004770	exon3	c.G1438T	p.D480Y	ACAAAGGACTCCG	.	115	32	86	2	.	0	0	0	0	0	3
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77618388	77618388	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFHX4-98	NM_024721	exon2	c.G2065T	p.G689C	GCCCGGGGTGAGA	.	119	73	119	0	.	0	0	0	0	0	5
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	77620165	77620165	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFHX4-98	NM_024721	exon3	c.2975delC	p.A992fs	GTATTGCCATTGG	.	290	69	193	0	.	0	0	0	0	0	3
ZFHX4	79776	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77763363	77763363	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFHX4-98	NM_024721	exon10	c.T4206C	p.C1402C	CCATTGTAGCTTG	.	141	43	159	1	.	0	0	0	0	0	4
ZFHX4	79776	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77763737	77763737	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFHX4-98	NM_024721	exon10	c.C4580A	p.P1527H	AAGGGCCCAATTT	.	247	78	172	1	.	0	0	0	0	0	4
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77776722	77776722	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFHX4-98	NM_024721	exon11	c.C10772G	p.S3591C	ATAATTCTTTGGA	.	262	38	178	0	.	0	0	0	0	0	5
ZBTB10	65986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	81412557	81412557	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZBTB10-522	NM_023929	exon2	c.G1801T	p.V601L	TGCTCAGTAATGC	.	143	72	131	0	.	0	0	0	0	0	5
PMP2	5375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	82359617	82359617	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PMP2-90	NM_002677	exon1	c.G5A	p.S2N	TTGTTGCTCATCG	.	122	37	110	0	.	0	0	0	0	0	5
CA13	377677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	86162997	86162997	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CA13-90	NM_198584	exon2	c.T66A	p.P22P	TTTCCCTATTGCT	.	234	104	183	0	.	0	0	0	0	0	5
ATP6V0D2	245972	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	87162446	87162446	+	Missense_Mutation	SNP	C	C	A	rs187338795	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP6V0D2-90	NM_152565	exon6	c.C745A	p.P249T	CTCTATCCTGAGG	.	202	69	106	1	C|0.999;T|0.001	0	0	0	0	0	3
DCAF4L2	138009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	88885067	88885067	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DCAF4L2-91	NM_152418	exon1	c.C1133A	p.A378E	CCTGGTGCTCCTC	.	91	32	68	0	.	0	0	0	0	0	5
TMEM55A	55529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	92008967	92008967	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM55A-90	NM_018710	exon6	c.C545G	p.S182X	CCCACTGAGGAGC	.	216	97	161	0	.	0	0	0	0	0	5
LRRC69	100130742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	92145519	92145519	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001129890	exon4	c.G565T	p.G189X	AACATTGGAGTTT	.	62	28	49	0	.	0	0	0	0	0	5
RUNX1T1	862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	92972688	92972688	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RUNX1T1-1196	NM_001198679	exon12	c.C1774A	p.R592R	AGTATCGGGCTGT	.	86	26	72	0	.	0	0	0	0	0	5
RAD54B	25788	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	95403988	95403988	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAD54B-539	NM_012415	exon10	c.C1658A	p.A553E	TGTAGTGCTCCTG	.	137	31	106	1	.	0	0	0	0	0	4
FBXO43	286151	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	101154328	101154328	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXO43-226	NM_001029860	exon2	c.154delG	p.D52fs	GAGAGTCCGCCCC	.	104	35	56	0	.	0	0	0	0	0	3
PABPC1	26986	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	101725319	101725319	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PABPC1-68	NM_002568	exon5	c.A734C	p.Q245P	ACTTTCTGTGCAT	.	107	50	120	2	.	0	0	0	0	0	3
RIMS2	9699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	104948841	104948841	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RIMS2-279	NM_001100117	exon13	c.C2438T	p.T813I	ACCAAACATTCAT	.	106	26	80	0	.	0	0	0	0	0	5
RIMS2	9699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	105263996	105263996	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RIMS2-279	NM_001100117	exon24	c.C3998A	p.A1333D	GAAGAGCTTCCCA	.	153	49	120	0	.	0	0	0	0	0	5
DCSTAMP	81501	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	105361150	105361150	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001257317	exon2	c.G370T	p.G124C	CTAGATGGTATGA	.	152	65	152	2	.	0	0	0	0	0	3
DPYS	1807	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	105405152	105405152	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DPYS-229	NM_001385	exon8	c.G1303A	p.G435R	GCACCCCGTGGCA	.	107	11	98	0	.	0	0	0	0	0	3
LRP12	29967	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	105511738	105511738	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRP12-90	NM_013437	exon4	c.T282G	p.D94E	ATCAAAATCCTGA	.	26	10	19	0	.	0	0	0	0	0	4
ZFPM2	23414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	106814687	106814687	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFPM2-139	NM_012082	exon8	c.G2377T	p.G793X	TTTCCAGGAATTG	.	276	76	231	0	.	0	0	0	0	0	5
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	110464351	110464351	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKHD1L1-145	NM_177531	exon42	c.6351-2A>T	.	TTTTACAGTGAAA	.	126	64	121	0	.	0	0	0	0	0	4
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110502235	110502235	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKHD1L1-145	NM_177531	exon60	c.G9935T	p.R3312M	GCTTCAGGGATAG	.	260	71	181	0	.	0	0	0	0	0	5
CSMD3	114788	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	113237100	113237100	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSMD3-1132	NM_198123	exon71	c.C11024G	p.A3675G	AAAGCTGCTTGGC	.	264	82	258	1	.	0	0	0	0	0	3
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113516042	113516042	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSMD3-1132	NM_198123	exon30	c.C5060A	p.T1687N	AATCCAGTGTAAC	.	106	48	78	0	.	0	0	0	0	0	5
CSMD3	114788	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	114111074	114111074	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSMD3-1132	NM_052900	exon5	c.G828T	p.G276G	TGTGTCCCCAGGC	.	188	59	139	1	.	0	0	0	0	0	3
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	114326847	114326847	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSMD3-1132	NM_052900	exon2	c.C354A	p.Y118X	TGATAAGTAGTCG	.	151	61	110	0	.	0	0	0	0	0	5
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	114449071	114449071	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSMD3-1132	NM_052900	exon1	c.C13A	p.R5S	CTTTGCGGATCCC	.	74	24	59	0	.	0	0	0	0	0	5
SLC30A8	169026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	118183272	118183272	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC30A8-229	NM_001172811	exon9	c.683-1G>C	.	TTGTCAGGTGTGC	.	172	68	128	0	.	0	0	0	0	0	4
MAL2	114569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	120252405	120252405	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_052886	exon4	c.G304A	p.D102N	TTTTAGGATTTTG	.	24	8	18	0	.	0	0	0	0	0	5
MAL2	114569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	120252497	120252497	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_052886	exon4	c.T396C	p.N132N	TTGCAATACAACC	.	57	13	38	0	.	0	0	0	0	0	5
COL14A1	7373	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	121215990	121215990	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL14A1-543	NM_021110	exon9	c.C920A	p.S307Y	TCGCCTCTGAACC	.	179	62	123	2	.	0	0	0	0	0	3
TMEM65	157378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	125339634	125339634	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM65-68	NM_194291	exon3	c.A378T	p.I126I	AAACCCTATGAAA	.	190	51	156	0	.	0	0	0	0	0	5
POU5F1B	5462	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	128428179	128428179	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001159542	exon1	c.68delG	p.W23fs	GGCCATGGGGGGC	.	61	19	46	0	.	0	0	0	0	0	3
POU5F1B	5462	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	8	128428183	128428183	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001159542	exon1	c.G72T	p.G24G	ATGGGGGGCGGAG	.	60	20	49	0	.	0	0	0	0	0	3
POU5F1B	5462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	128428187	128428187	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001159542	exon1	c.G76C	p.E26Q	GGGGCGGAGCCGG	.	61	23	52	0	.	0	0	0	0	0	5
ADCY8	114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	131964240	131964240	+	Missense_Mutation	SNP	C	C	A	rs138524416	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADCY8-157	NM_001115	exon3	c.G1115T	p.R372L	ACGAGCCGCTCCT	.	216	59	150	0	C|1.000;T|0.000	0	0	0	0	0	5
HHLA1	10086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	133090001	133090001	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145095	exon11	c.C1143A	p.G381G	TGGGCTGCCAGGT	.	130	60	96	0	.	0	0	0	0	0	4
KCNQ3	3786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133187720	133187720	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNQ3-138	NM_004519	exon5	c.G913T	p.D305Y	GGGCATCTGCATA	.	227	108	166	0	.	0	0	0	0	0	5
SLA	6503	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	134050829	134050829	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLA-279	NM_006748	exon7	c.G891T	p.M297I	ACCATACATCAGG	.	244	72	196	2	.	0	0	0	0	0	3
SLA	6503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	134072520	134072520	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLA-279	NM_006748	exon1	c.C6G	p.L2L	TTTAGAGAGCATC	.	173	54	124	0	.	0	0	0	0	0	5
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	134145773	134145773	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TG-145	NM_003235	exon47	c.C8057A	p.P2686H	CCTGGCCTGACTT	.	169	73	163	0	.	0	0	0	0	0	5
FAM135B	51059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	139158277	139158277	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM135B-31	NM_015912	exon15	c.C3465A	p.L1155L	CAGCCGGAGGTCT	.	67	25	39	0	.	0	0	0	0	0	5
FAM135B	51059	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	139165292	139165292	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM135B-31	NM_015912	exon13	c.G1426T	p.V476F	TTATAACTTCTTC	.	163	33	138	0	.	0	0	0	0	0	4
FAM135B	51059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	139190892	139190892	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM135B-31	NM_015912	exon10	c.G915T	p.K305N	CAGATCCTTGCTT	.	235	58	204	0	.	0	0	0	0	0	5
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	139712358	139712358	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL22A1-103	NM_152888	exon32	c.G2589T	p.M863I	TACGGGCATCCGT	.	136	47	103	0	.	0	0	0	0	0	5
ARC	23237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	143694448	143694448	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARC-135	NM_015193	exon1	c.C1185A	p.P395P	CTACTCGGGCTGG	.	143	44	47	0	.	0	0	0	0	0	5
ARC	23237	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	143694832	143694832	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARC-135	NM_015193	exon1	c.C801G	p.F267L	CTTCTTGAACTCC	.	169	87	126	1	.	0	0	0	0	0	3
TIGD5	84948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144681841	144681841	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TIGD5-90	NM_032862	exon1	c.G1768T	p.E590X	GCCGGGGAGGCCG	.	166	66	70	0	.	0	0	0	0	0	5
FAM83H	286077	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	144811162	144811162	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM83H-92	NM_198488	exon4	c.G712C	p.A238P	CCACGGCACAGTC	.	224	95	177	2	.	0	0	0	0	0	3
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	144940543	144940543	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPPK1-25	NM_031308	exon1	c.C6879T	p.G2293G	CTCGCCGCCCACC	.	256	25	27	0	.	0	0	0	0	0	3
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144941957	144941957	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPPK1-25	NM_031308	exon1	c.G5465T	p.G1822V	AGGCCCCCACTCT	.	160	57	110	0	.	0	0	0	0	0	5
PLEC	5339	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	144991254	144991254	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLEC-141	NM_201380	exon32	c.C13146T	p.S4382S	GGAACGGGAGCGG	.	346	125	207	1	.	0	0	0	0	0	3
GPAA1	8733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	145140943	145140943	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPAA1-90	NM_003801	exon12	c.C1781A	p.T594N	ACCACACCTACGG	.	98	12	66	0	.	0	0	0	0	0	4
MROH1	727957	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	145245734	145245734	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001099280	exon8	c.G610T	p.D204Y	AACCTGGACCGAG	.	169	54	108	1	.	0	0	0	0	0	3
CYHR1	50626	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	145678757	145678757	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CYHR1-90	NM_138496	exon3	c.C333T	p.P111P	ACAATTGGGGCAC	.	264	113	189	2	.	0	0	0	0	0	3
DMRT3	58524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	990798	990798	+	Missense_Mutation	SNP	G	G	T	rs148970201	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DMRT3-516	NM_021240	exon2	c.G1212T	p.R404S	GCTGAGGTCCCAG	.	98	55	130	0	G|0.999;A|0.000	0	0	0	0	0	5
PTPRD	5789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	8518129	8518129	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPRD-912	NM_130392	exon10	c.C1262A	p.P421Q	TCCCTCGGGGCAC	.	138	64	224	0	.	0	0	0	0	0	5
PTPRD	5789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	8636699	8636699	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPRD-912	NM_001040712	exon2	c.G210T	p.E70D	TAATACCTCAAAT	.	138	88	213	0	.	0	0	0	0	0	5
HAUS6	54801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	19063554	19063554	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HAUS6-92	NM_017645	exon13	c.A1401G	p.S467S	TGAAACTGACTGC	.	139	77	234	0	.	0	0	0	0	0	5
CCIN	881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	36170829	36170829	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCIN-92	NM_005893	exon1	c.G1330T	p.V444L	GTCGGGGTAGTGG	.	156	86	198	0	.	0	0	0	0	0	5
SPATA31A6	389730	broad.mit.edu;ucsc.edu;mdanderson.org	37	9	43627064	43627064	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145196	exon4	c.G1623T	p.W541C	CAAAGGCCATTCA	.	16	10	22	0	.	0	0	0	0	0	3
KLF9	687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	73027994	73027994	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLF9-90	NM_001206	exon1	c.G286C	p.D96H	CGCTGTCGGATCC	.	230	39	205	0	.	0	0	0	0	0	5
TMEM2	23670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	74349872	74349872	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM2-92	NM_013390	exon6	c.G1243T	p.G415X	TCACTCCATCTAC	.	76	20	55	0	.	0	0	0	0	0	4
GDA	9615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	74810477	74810477	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GDA-230	NM_004293	exon2	c.C185A	p.P62Q	TCAAGCCGTGTGA	.	48	14	35	0	.	0	0	0	0	0	5
RORB	6096	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	77249546	77249546	+	Splice_Site	DEL	G	G	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RORB-229	NM_006914	exon3	c.94-1G>-	.	CCTCAAGGGATTC	.	45	15	45	0	.	0	0	0	0	0	3
TRPM6	140803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	77423024	77423024	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPM6-335	NM_017662	exon14	c.G1564T	p.G522C	CTCTACCAATGAG	.	155	46	139	0	.	0	0	0	0	0	5
TRPM6	140803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	77431651	77431651	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPM6-335	NM_017662	exon11	c.G1242T	p.L414L	CATTGCCAGATTT	.	50	14	45	0	.	0	0	0	0	0	5
PRUNE2	158471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79320603	79320603	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRUNE2-157	NM_015225	exon8	c.A6587T	p.N2196I	TCACCGTTTATTT	.	155	56	141	0	.	0	0	0	0	0	5
TLE4	7091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	82321726	82321726	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TLE4-524	NM_007005	exon11	c.G848T	p.R283L	AGACACGCCTGCT	.	90	30	108	0	.	0	0	0	0	0	5
SPATA31D1	389763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	84607383	84607383	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001001670	exon4	c.C1998A	p.V666V	CAAGGTCCATGTT	.	227	78	201	0	.	0	0	0	0	0	5
SPATA31D1	389763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	84607770	84607770	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001001670	exon4	c.G2385T	p.K795N	AGACAAGGATCTG	.	571	178	505	0	.	0	0	0	0	0	4
SPATA31D1	389763	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	84608003	84608003	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001001670	exon4	c.A2618T	p.H873L	TTAAACATCGAAA	.	553	150	541	2	.	0	0	0	0	0	3
SPATA31D1	389763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	84608098	84608098	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001001670	exon4	c.G2713T	p.A905S	TTGGAAGCCCATA	.	160	65	172	0	.	0	0	0	0	0	5
AGTPBP1	23287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	88162051	88162051	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AGTPBP1-158	NM_015239	exon26	c.T3534A	p.S1178S	TAATTCAGAGTCA	.	130	45	141	0	.	0	0	0	0	0	5
DAPK1	1612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	90318057	90318057	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DAPK1-359	NM_004938	exon25	c.G2985T	p.V995V	CGACGTGCAGGAC	.	192	69	171	0	.	0	0	0	0	0	5
SYK	6850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	93637019	93637019	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SYK-1402	NM_003177	exon9	c.G1069C	p.E357Q	CCCGAGGAGATCA	.	108	52	128	0	.	0	0	0	0	0	5
NOL8	55035	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	95076909	95076909	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOL8-23	NM_017948	exon7	c.G1998C	p.K666N	ACTTCTCTTTTCA	.	166	47	142	2	.	0	0	0	0	0	3
NOL8	55035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	95077071	95077071	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOL8-23	NM_017948	exon7	c.C1836T	p.S612S	TTCCATGGATATG	.	52	25	59	0	.	0	0	0	0	0	5
ECM2	1842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	95263198	95263198	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ECM2-131	NM_001393	exon9	c.C1742A	p.P581Q	AGGCCTGGTTCCA	.	215	58	231	0	.	0	0	0	0	0	4
ECM2	1842	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	95263199	95263199	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ECM2-131	NM_001393	exon9	c.C1741A	p.P581T	GGCCTGGTTCCAT	.	219	60	227	1	.	0	0	0	0	0	3
FAM22G	441457	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	99694487	99694487	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM22G-69	NM_001045477	exon2	c.500delC	p.A167fs	AGGTGGCCCCCAT	.	713	165	392	0	.	0	0	0	0	0	3
HEMGN	55363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	100693484	100693484	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HEMGN-91	NM_197978	exon3	c.C193A	p.Q65K	TCTGCTGCTTGCG	.	27	6	18	0	.	0	0	0	0	0	4
COL15A1	1306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	101749611	101749611	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL15A1-96	NM_001855	exon4	c.C684A	p.P228P	CGACCCCAGGACT	.	80	30	62	0	.	0	0	0	0	0	5
COL15A1	1306	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	101765834	101765834	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL15A1-96	NM_001855	exon8	c.A1165G	p.M389V	CTCTCTATGTCCA	.	266	91	260	1	.	0	0	0	0	0	3
GRIN3A	116443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	104390541	104390541	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRIN3A-96	NM_133445	exon4	c.T2495A	p.L832Q	CACTTCAGATACT	.	42	4	39	0	.	0	0	0	0	0	4
GRIN3A	116443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	104432880	104432880	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRIN3A-96	NM_133445	exon3	c.A1814T	p.Y605F	GCTCCATACTTTC	.	108	33	138	0	.	0	0	0	0	0	5
OR13C8	138802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107331611	107331611	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR13C8-70	NM_001004483	exon1	c.C163A	p.L55M	TCTCACCTGCACA	.	96	30	97	0	.	0	0	0	0	0	5
ZNF462	58499	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	109746465	109746465	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF462-95	NM_021224	exon10	c.6833-2A>T	.	TTCCACAGAAGAG	.	99	33	71	1	.	0	0	0	0	0	3
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113169869	113169869	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SVEP1-75	NM_153366	exon38	c.C8011A	p.H2671N	ATGAATGTGTAGC	.	116	35	96	0	.	0	0	0	0	0	5
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113265477	113265477	+	Missense_Mutation	SNP	G	G	T	rs200840190	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SVEP1-75	NM_153366	exon6	c.C1324A	p.R442S	GCTGGCGGAGATG	.	251	85	209	0	G|0.999;A|0.001	0	0	0	0	0	5
MUSK	4593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113547978	113547978	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUSK-1379	NM_005592	exon12	c.T1758A	p.F586L	AGCGTTTGGAAGG	.	141	68	110	0	.	0	0	0	0	0	5
FKBP15	23307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	115969505	115969505	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FKBP15-25	NM_015258	exon3	c.C241T	p.H81Y	ATGCATGGACTGC	.	191	83	136	0	.	0	0	0	0	0	5
ALAD	210	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	116151361	116151361	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALAD-90	NM_000031	exon11	c.A827T	p.Y276F	ACGTGGTACACGG	.	257	102	231	2	.	0	0	0	0	0	3
C9orf43	257169	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116176080	116176080	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C9orf43-90	NM_152786	exon3	c.G193A	p.G65S	GATTCCGGCTTTG	.	95	33	113	2	.	0	0	0	0	0	4
COL27A1	85301	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	117070019	117070019	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL27A1-94	NM_032888	exon59	c.T5178C	p.H1726H	CACTCATGGTGGA	.	259	85	191	1	.	0	0	0	0	0	3
AKNA	80709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	117143414	117143414	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AKNA-94	NM_030767	exon2	c.C200T	p.P67L	AGGGGCGGCAGGT	.	114	51	64	0	.	0	0	0	0	0	5
PAPPA	5069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	118949703	118949703	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAPPA-77	NM_002581	exon2	c.G686C	p.S229T	TATTCAGCCCACT	.	93	12	86	0	.	0	0	0	0	0	4
PAPPA	5069	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	118997834	118997834	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAPPA-77	NM_002581	exon7	c.C2650G	p.L884V	AAGCCCCTGAAGT	.	142	43	137	1	.	0	0	0	0	0	3
PAPPA	5069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	119097159	119097159	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAPPA-77	NM_002581	exon13	c.C3417A	p.C1139X	GAGCTGCAGGAAC	.	129	27	106	0	.	0	0	0	0	0	5
TLR4	7099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	120475502	120475502	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TLR4-577	NM_138554	exon3	c.G1096C	p.A366P	GGGAATGCTTTTT	.	128	35	137	0	.	0	0	0	0	0	5
MORN5	254956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	124936842	124936842	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MORN5-90	NM_198469	exon4	c.C375A	p.D125E	TGGAGACGGCTTC	.	106	46	124	0	.	0	0	0	0	0	5
LHX6	26468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	124971944	124971944	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LHX6-90	NM_014368	exon9	c.C1107A	p.P369P	GTGGACGGGGGGT	.	201	91	159	0	.	0	0	0	0	0	5
PTGS1	5742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125154577	125154577	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTGS1-228	NM_000962	exon11	c.G1554T	p.G518G	CTTTGGGGAGAGT	.	178	67	129	0	.	0	0	0	0	0	5
OR1K1	392392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125562551	125562551	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR1K1-69	NM_080859	exon1	c.C150A	p.I50I	TGCCATCCAGGCC	.	255	102	161	0	.	0	0	0	0	0	5
ZBTB26	57684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125681181	125681181	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZBTB26-90	NM_020924	exon2	c.C1033T	p.L345F	GGTTAAGATGATC	.	76	24	95	0	.	0	0	0	0	0	5
OLFML2A	169611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	127549290	127549290	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OLFML2A-68	NM_182487	exon2	c.G127T	p.E43X	ACCTCGGAGGGCT	.	48	18	28	0	.	0	0	0	0	0	5
GOLGA1	2800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	127670717	127670717	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GOLGA1-91	NM_002077	exon12	c.G1004A	p.R335K	TGTTGTCTGGTAT	.	96	34	78	0	.	0	0	0	0	0	5
SPTAN1	6709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131395498	131395498	+	Missense_Mutation	SNP	G	G	A	rs141980692	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPTAN1-158	NM_001130438	exon57	c.G7319A	p.R2440Q	TGACCCGGGAACA	.	97	21	77	0	G|0.999;A|0.001	0	0	0	0	0	4
ZER1	10444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131513410	131513410	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZER1-91	NM_006336	exon7	c.G1176T	p.R392R	CAGGGCCCGCAGC	.	150	50	85	0	.	0	0	0	0	0	5
ASS1	445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	133342123	133342123	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASS1-91	NM_054012	exon6	c.C432T	p.P144P	TGCTCCCTGGAGG	.	130	44	100	0	.	0	0	0	0	0	5
SETX	23064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135140278	135140278	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SETX-93	NM_015046	exon26	c.A7382T	p.K2461M	AGAATCTTCACTG	.	124	57	103	0	.	0	0	0	0	0	5
SETX	23064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135210060	135210060	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SETX-93	NM_015046	exon7	c.T773G	p.L258W	GAGCCCAACAACA	.	154	25	129	0	.	0	0	0	0	0	5
DDX31	64794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	135505693	135505693	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DDX31-226	NM_022779	exon16	c.C1904T	p.S635L	GCCTCCGAAGGAG	.	84	14	74	0	.	0	0	0	0	0	4
GTF3C4	9329	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135554353	135554353	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GTF3C4-91	NM_012204	exon2	c.G1347T	p.Q449H	GAGGCAGCTGATT	.	216	77	165	1	.	0	0	0	0	0	4
TSC1	7248	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	135781060	135781060	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TSC1-1906	NM_000368	exon15	c.A1905T	p.T635T	TTCCTCTGTGTTT	.	209	69	170	1	.	0	0	0	0	0	3
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	137658845	137658845	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL5A1-524	NM_000093	exon23	c.2134-1G>T	.	CCTGTAGGGTCCC	.	161	54	130	0	.	0	0	0	0	0	4
SOHLH1	402381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	138585537	138585537	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SOHLH1-135	NM_001101677	exon8	c.G1070A	p.S357N	AGAGGGCTGTCCT	.	250	83	195	0	.	0	0	0	0	0	5
KCNT1	57582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	138660771	138660771	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNT1-137	NM_020822	exon15	c.G1498T	p.V500F	TTTCACGTCAAGT	.	65	15	43	0	.	0	0	0	0	0	5
SEC16A	9919	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139341310	139341310	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_014866	exon28	c.C6789T	p.P2263P	CACCTTGGGCTCT	.	80	33	73	1	.	0	0	0	0	0	3
NOTCH1	4851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139391450	139391450	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOTCH1-5459	NM_017617	exon34	c.G6741C	p.L2247L	CACGTTCAGGTGC	.	171	44	14	0	.	0	0	0	0	0	5
LCN6	158062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139639178	139639178	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LCN6-90	NM_198946	exon5	c.C428G	p.A143G	TGGCTGGCTGTCT	.	134	53	120	0	.	0	0	0	0	0	5
SLC34A3	142680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140126591	140126591	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC34A3-90	NM_001177317	exon3	c.G153T	p.K51N	GCTGAAGGACACA	.	165	64	143	0	.	0	0	0	0	0	5
PPP2R3B	28227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	322316	322316	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPP2R3B-136	NM_013239	exon2	c.C334T	p.R112W	CTTTCCGTGTCTG	.	278	154	312	1	.	0	0	0	0	0	5
CD99	4267	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	2637737	2637737	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CD99-40	NM_002414	exon4	c.G184T	p.G62X	GTTGATGGAGAAA	.	413	222	537	2	.	0	0	0	0	0	3
MXRA5	25878	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	3229122	3229122	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MXRA5-136	NM_015419	exon7	c.C7122T	p.P2374P	GGGCATGGGTTCT	.	157	74	192	1	.	0	0	0	0	0	3
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3241638	3241638	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MXRA5-136	NM_015419	exon5	c.G2088C	p.V696V	ATCCTCCACGATG	.	73	45	91	0	.	0	0	0	0	0	5
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3248114	3248114	+	Silent	SNP	C	C	A	rs200950732	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MXRA5-136	NM_015419	exon4	c.G654T	p.P218P	GGTCCACGGATTT	.	76	38	132	0	.	0	0	0	0	0	5
FAM9A	171482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	8763196	8763196	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM9A-130	NM_174951	exon7	c.G754T	p.G252X	CTCCTCCTTCTTC	.	48	32	59	0	.	0	0	0	0	0	5
AMELX	265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	11316882	11316882	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AMELX-130	NM_182680	exon6	c.C401T	p.P134L	ACCTCCCTCCGCC	.	162	77	153	0	.	0	0	0	0	0	5
FAM9C	171484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	13056583	13056583	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM9C-130	NM_174901	exon7	c.G478A	p.G160R	CTTTCCCATCTTG	.	17	8	35	0	.	0	0	0	0	0	5
ZRSR2	8233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	15841143	15841143	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZRSR2-133	NM_005089	exon11	c.A1227G	p.K409K	TCACAAACGCACA	.	214	125	210	1	.	0	0	0	0	0	4
GRPR	2925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	16168476	16168476	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRPR-565	NM_005314	exon2	c.G462A	p.L154L	TGCCCTGATGAAG	.	107	60	164	0	.	0	0	0	0	0	5
PHKA2	5256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	18911675	18911675	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHKA2-131	NM_000292	exon33	c.G3636T	p.M1212I	GTAGGTCATCGTC	.	231	103	155	0	.	0	0	0	0	0	5
PHKA2	5256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	18942242	18942242	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHKA2-131	NM_000292	exon17	c.C1725T	p.G575G	GTCTGAGCCATCA	.	352	133	286	1	.	0	0	0	0	0	4
GPR64	10149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	19046318	19046318	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR64-130	NM_001184834	exon10	c.G397T	p.E133X	TGCTTTCTTTATC	.	147	46	153	0	.	0	0	0	0	0	5
SUPT20HL1	100130302	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	24383063	24383063	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001136234	exon1	c.C2186A	p.A729E	GTTCCGCACTAGG	.	320	170	475	2	.	0	0	0	0	0	3
SUPT20HL1	100130302	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24383065	24383065	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001136234	exon1	c.C2188A	p.L730I	TCCGCACTAGGTT	.	320	171	479	1	.	0	0	0	0	0	4
MAGEB6	158809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	26212653	26212653	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAGEB6-133	NM_173523	exon2	c.G690T	p.K230N	GTACAAGCCCTAC	.	126	66	208	0	.	0	0	0	0	0	5
MAGEB6	158809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	26212780	26212780	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAGEB6-133	NM_173523	exon2	c.G817T	p.E273X	CCCAGTGAAGGAA	.	123	64	167	0	.	0	0	0	0	0	5
DCAF8L1	139425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	27998833	27998833	+	Missense_Mutation	SNP	G	G	T	rs148833488	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DCAF8L1-112	NM_001017930	exon1	c.C619A	p.R207S	TGCCACGCTGGTT	.	184	93	238	0	G|1.000;A|0.000	0	0	0	0	0	5
MAGEB1	4112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	30268640	30268640	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAGEB1-130	NM_177415	exon3	c.T30A	p.R10R	GCTCCGTGCTCGT	.	271	143	377	0	.	0	0	0	0	0	5
TAB3	257397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	30849617	30849617	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAB3-131	NM_152787	exon11	c.G2066T	p.C689F	CTATCACAATTCC	.	164	32	164	0	.	0	0	0	0	0	5
FTHL17	53940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	31090008	31090008	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FTHL17-130	NM_031894	exon1	c.C63G	p.I21M	GCTGTTGATGGCG	.	566	131	305	0	.	0	0	0	0	0	5
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	31222119	31222119	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DMD-265	NM_004006	exon67	c.G9766A	p.G3256S	TACTGCCCCCAAA	.	220	50	234	0	.	0	0	0	0	0	5
DMD	1756	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	31514988	31514988	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DMD-265	NM_004006	exon57	c.C8464A	p.Q2822K	TCAGCTGTAGCCA	.	199	93	219	1	.	0	0	0	0	0	3
FAM47B	170062	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	34961915	34961915	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM47B-196	NM_152631	exon1	c.C967A	p.P323T	CCGGAGCCTCCCG	.	80	43	120	1	.	0	0	0	0	0	4
CXorf22	170063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	35971805	35971805	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CXorf22-131	NM_152632	exon7	c.T1143G	p.F381L	TGGATTTTTGAGA	.	163	36	247	0	.	0	0	0	0	0	5
CXorf30	645090	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	36319291	36319291	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CXorf30-62	NM_001098843	exon8	c.G305T	p.G102V	ACCTTGGCAAGTA	.	172	96	237	2	.	0	0	0	0	0	3
FAM47C	442444	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	37027035	37027035	+	Silent	SNP	G	G	T	rs61730915	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM47C-111	NM_001013736	exon1	c.G552T	p.G184G	CTGTGGGGAATTC	.	71	49	93	0	G|0.992;A|0.008	0	0	0	0	0	4
FAM47C	442444	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	37028109	37028109	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM47C-111	NM_001013736	exon1	c.C1626A	p.S542R	GAGTAGCGTATCT	.	92	41	117	1	.	0	0	0	0	0	4
USP9X	8239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	41025466	41025466	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP9X-563	NM_001039591	exon16	c.G2327C	p.R776T	TTTGGAGGGTAAG	.	48	30	48	0	.	0	0	0	0	0	5
CHST7	56548	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	46433693	46433693	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHST7-133	NM_019886	exon1	c.C327A	p.T109T	TGCCACCTGGCGC	.	185	39	138	2	.	0	0	0	0	0	3
SLC9A7	84679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	46541866	46541866	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC9A7-132	NM_001257291	exon2	c.G430T	p.V144L	CATTCACTAATAA	.	133	22	152	0	.	0	0	0	0	0	5
NDUFB11	54539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47002022	47002022	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NDUFB11-130	NM_019056	exon2	c.C329A	p.P110H	TAGTCAGGCAGAT	.	202	48	221	0	.	0	0	0	0	0	5
NDUFB11	54539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47002127	47002127	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NDUFB11-130	NM_019056	exon2	c.G224T	p.G75V	TCATAACCATGGG	.	253	48	322	0	.	0	0	0	0	0	5
RBM10	8241	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47032530	47032530	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBM10-626	NM_001204468	exon5	c.C631A	p.R211S	TAGATCCGTGGCC	.	137	25	121	1	.	0	0	0	0	0	4
ZNF81	347344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47705685	47705685	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF81-130	NM_007137	exon2	c.G19T	p.A7S	GAGGACGCTCCCC	.	89	24	82	0	.	0	0	0	0	0	5
ZNF630	57232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47919260	47919260	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF630-131	NM_001037735	exon5	c.T571A	p.L191I	TTAGTAAGTCTGA	.	34	10	43	0	.	0	0	0	0	0	5
SLC38A5	92745	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	48319044	48319044	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC38A5-133	NM_033518	exon14	c.G1059T	p.V353V	GAACAGCACGACT	.	172	37	152	1	.	0	0	0	0	0	3
WAS	7454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48547809	48547809	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WAS-563	NM_000377	exon11	c.C1439T	p.A480V	GCAGAGCCATCCA	.	342	75	360	0	.	0	0	0	0	0	5
HDAC6	10013	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	48676461	48676461	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HDAC6-230	NM_006044	exon21	c.G1939T	p.D647Y	ATTGTGGATTGGG	.	286	51	271	1	.	0	0	0	0	0	3
HDAC6	10013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48678641	48678641	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HDAC6-230	NM_006044	exon23	c.C2316A	p.G772G	CAGTGGCCGCATT	.	80	15	77	0	.	0	0	0	0	0	5
OTUD5	55593	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48814313	48814313	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OTUD5-541	NM_001136157	exon1	c.G520T	p.G174C	TGTAGCCTGCGCC	.	148	31	86	1	.	0	0	0	0	0	4
KCND1	3750	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	48822694	48822694	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCND1-133	NM_004979	exon5	c.G1486C	p.E496Q	TGAGCTCATCTGT	.	418	76	385	1	.	0	0	0	0	0	3
GRIPAP1	56850	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48832699	48832699	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRIPAP1-227	NM_020137	exon23	c.A2138T	p.Q713L	AGCCGCTGAAAGA	.	228	46	222	1	.	0	0	0	0	0	4
GRIPAP1	56850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48853737	48853737	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRIPAP1-227	NM_020137	exon5	c.G231C	p.M77I	CTGCAGCATCTCA	.	51	13	36	0	.	0	0	0	0	0	5
PRAF2	11230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48929617	48929617	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRAF2-130	NM_007213	exon3	c.G448C	p.E150Q	TGTTCTCAATCTT	.	73	19	66	0	.	0	0	0	0	0	5
WDR45	11152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48935536	48935536	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDR45-131	NM_007075	exon4	c.C90T	p.R30R	GTAGATGCGCACA	.	91	19	93	0	.	0	0	0	0	0	5
CACNA1F	778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49074374	49074374	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNA1F-176	NM_005183	exon25	c.G3052A	p.G1018R	GCACCCCGATGCA	.	152	46	155	0	.	0	0	0	0	0	5
PPP1R3F	89801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49142338	49142338	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPP1R3F-229	NM_033215	exon4	c.G1186T	p.D396Y	GAAGGTGATGTCC	.	329	49	260	0	.	0	0	0	0	0	5
CLCN5	1184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49851057	49851057	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLCN5-132	NM_001127898	exon11	c.C1087T	p.R363C	ACTCTACGCTCCA	.	117	30	100	0	.	0	0	0	0	0	5
AKAP4	8852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49957836	49957836	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AKAP4-540	NM_003886	exon5	c.C1528A	p.Q510K	GCTTTTGGTTCCA	.	111	23	96	1	.	0	0	0	0	0	4
CCNB3	85417	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	50054083	50054083	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCNB3-482	NM_033031	exon5	c.2914delG	p.G972fs	CAAGTTGGAACCA	.	186	50	204	0	.	0	0	0	0	0	3
SHROOM4	57477	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	50377365	50377365	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SHROOM4-131	NM_020717	exon4	c.C1708A	p.R570R	CACTTCGCCTACC	.	65	16	87	0	.	0	0	0	0	0	4
SHROOM4	57477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	50377405	50377405	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SHROOM4-131	NM_020717	exon4	c.G1668C	p.G556G	GCTGTCCCCTTCT	.	97	21	138	0	.	0	0	0	0	0	5
NUDT10	170685	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	51075872	51075872	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NUDT10-90	NM_153183	exon2	c.C55A	p.R19R	AAGAAGCGGGCGG	.	759	121	541	1	.	0	0	0	0	0	4
GSPT2	23708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	51487049	51487049	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GSPT2-228	NM_018094	exon1	c.T327A	p.P109P	GGCACCTGTGGAA	.	67	12	28	0	.	0	0	0	0	0	4
GPR173	54328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53105990	53105990	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR173-130	NM_018969	exon2	c.G187T	p.D63Y	CTGCTGGACCTGT	.	121	26	145	0	.	0	0	0	0	0	5
IQSEC2	23096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53278002	53278002	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IQSEC2-178	NM_001111125	exon6	c.G2360T	p.G787V	GCCACTCCCACCG	.	94	42	76	0	.	0	0	0	0	0	5
IQSEC2	23096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53279726	53279726	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IQSEC2-178	NM_001111125	exon5	c.G2032T	p.G678C	TCCGACCCCCAGC	.	68	18	57	0	.	0	0	0	0	0	5
IQSEC2	23096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53279966	53279966	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IQSEC2-178	NM_001111125	exon5	c.C1792G	p.P598A	TAGGAGGCTCAAT	.	115	27	106	0	.	0	0	0	0	0	5
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53561133	53561133	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HUWE1-280	NM_031407	exon83	c.G12857A	p.R4286H	AAAGAACGCAATG	.	414	97	434	0	.	0	0	0	0	0	5
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53602737	53602737	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HUWE1-280	NM_031407	exon45	c.G5896T	p.D1966Y	TAGGATCAGATTT	.	146	26	178	0	.	0	0	0	0	0	5
WNK3	65267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54228531	54228531	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WNK3-441	NM_020922	exon23	c.G4966T	p.D1656Y	TCCAGTCATCCAC	.	105	26	127	0	.	0	0	0	0	0	5
WNK3	65267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	54263789	54263789	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WNK3-441	NM_020922	exon20	c.G4210C	p.E1404Q	AGGTTTCCTGAAG	.	63	6	81	0	.	0	0	0	0	0	4
WNK3	65267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	54263899	54263899	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WNK3-441	NM_020922	exon20	c.C4100A	p.S1367Y	TCACTAGAATGGT	.	15	5	21	0	.	0	0	0	0	0	4
GNL3L	54552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	54586952	54586952	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GNL3L-131	NM_019067	exon16	c.1667-1G>C	.	TTTGCAGATAAAA	.	106	20	79	0	.	0	0	0	0	0	4
ITIH6	347365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54800536	54800536	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_198510	exon6	c.T881G	p.M294R	CCAAACATGGAGC	.	442	81	446	0	.	0	0	0	0	0	5
ITIH6	347365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54817377	54817377	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_198510	exon4	c.T509A	p.L170X	TTCACCAATTGGC	.	223	45	217	0	.	0	0	0	0	0	5
KLF8	11279	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	56259773	56259773	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLF8-131	NM_001159296	exon2	c.C6A	p.V2V	CATGGTCGGTAAG	.	104	21	140	1	.	0	0	0	0	0	3
SPIN3	169981	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	57020873	57020873	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPIN3-131	NM_001010862	exon2	c.C508A	p.P170T	ATACAGGATCTTT	.	173	31	190	1	.	0	0	0	0	0	4
SPIN2B	474343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	57146348	57146348	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPIN2B-90	NM_001006683	exon2	c.T715A	p.Y239N	TGAAATACACAGA	.	824	160	973	0	.	0	0	0	0	0	5
SPIN2B	474343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	57146372	57146372	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPIN2B-90	NM_001006683	exon2	c.C691A	p.Q231K	CCACTTGGTGAAT	.	771	141	956	0	.	0	0	0	0	0	5
SPIN2A	54466	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	57162366	57162366	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPIN2A-130	NM_019003	exon2	c.C665G	p.S222C	CTTTTGGAGCCAT	.	734	148	824	1	.	0	0	0	0	0	3
HEPH	9843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	65412128	65412128	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HEPH-135	NM_138737	exon7	c.G1382T	p.R461I	ATTTGAGAGAGCC	.	209	110	345	1	.	0	0	0	0	0	4
FAM155B	27112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	68748874	68748874	+	Missense_Mutation	SNP	C	C	G	rs200565192	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM155B-131	NM_015686	exon2	c.C900G	p.S300R	CTTCAGCGTGACC	.	135	80	204	0	C|0.999;T|0.001	0	0	0	0	0	5
OTUD6A	139562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	69282886	69282886	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OTUD6A-541	NM_207320	exon1	c.G512T	p.R171L	TGCTGCGCTGCCG	.	269	154	318	0	.	0	0	0	0	0	5
GDPD2	54857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	69646560	69646560	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GDPD2-132	NM_017711	exon7	c.G525A	p.V175V	GCCTGTGGCTGAT	.	217	137	268	0	.	0	0	0	0	0	5
OGT	8473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70776864	70776864	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OGT-113	NM_181672	exon10	c.A1229T	p.D410V	TGCAGGATGTTCA	.	207	91	320	0	.	0	0	0	0	0	5
NHSL2	340527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	71354404	71354404	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NHSL2-108	NM_001013627	exon4	c.G610A	p.V204M	CAGGGTGTGAGGG	.	250	140	343	0	.	0	0	0	0	0	5
ZCCHC5	203430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	77912640	77912640	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZCCHC5-131	NM_152694	exon2	c.C1278A	p.I426I	GCAGTTGATTGCA	.	157	96	200	0	.	0	0	0	0	0	5
TBX22	50945	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	79278676	79278676	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBX22-628	NM_016954	exon2	c.G293T	p.G98V	TTCAAGGATCTGA	.	190	102	286	2	.	0	0	0	0	0	4
BRWD3	254065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	79971694	79971694	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BRWD3-134	NM_153252	exon20	c.G2287T	p.V763F	TTTCAACTGTATA	.	59	20	79	0	.	0	0	0	0	0	5
DACH2	117154	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	85404068	85404068	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DACH2-136	NM_001139514	exon1	c.C444T	p.T148T	CATCACCAGGAAA	.	81	40	116	1	.	0	0	0	0	0	3
KLHL4	56062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	86890618	86890618	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLHL4-133	NM_019117	exon9	c.T1768A	p.F590I	GAATACTTTGACC	.	99	26	174	0	.	0	0	0	0	0	5
PCDH11X	27328	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	91133492	91133492	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH11X-193	NM_001168363	exon2	c.C2253G	p.V751V	GTTGGTCAAAGCT	.	519	292	782	0	.	0	0	0	0	0	4
PCDH11X	27328	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	91133563	91133563	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH11X-193	NM_001168363	exon2	c.C2324A	p.S775X	ATGAGTCGGTGAC	.	526	312	785	2	.	0	0	0	0	0	4
PCDH11X	27328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	91873488	91873488	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH11X-193	NM_032968	exon7	c.G3593T	p.S1198I	GCCACAGCCCTCC	.	812	136	855	1	.	0	0	0	0	0	5
DIAPH2	1730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	96724708	96724708	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DIAPH2-133	NM_007309	exon27	c.G3257T	p.C1086F	ATCCCTGTGCAAC	.	286	44	371	0	.	0	0	0	0	0	5
PCDH19	57526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	99661493	99661493	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH19-110	NM_001184880	exon1	c.C2103G	p.I701M	GCACTTGATTGCC	.	142	54	156	0	.	0	0	0	0	0	5
TNMD	64102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	99854700	99854700	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNMD-130	NM_022144	exon7	c.C940A	p.L314M	CGCATGCTGGGGA	.	84	15	80	0	.	0	0	0	0	0	4
TSPAN6	7105	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	99890216	99890216	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TSPAN6-131	NM_003270	exon3	c.G310T	p.E104X	CCAGTTCGACCAA	.	175	37	187	0	.	0	0	0	0	0	4
CSTF2	1478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100093269	100093269	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSTF2-131	NM_001325	exon13	c.G1653T	p.Q551H	AGACCAGATTGCC	.	195	33	218	0	.	0	0	0	0	0	5
DRP2	1821	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	100509496	100509496	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DRP2-132	NM_001939	exon18	c.C2060A	p.P687H	AACACCCTCAGCG	.	491	109	568	2	.	0	0	0	0	0	3
BTK	695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	100615077	100615077	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BTK-1395	NM_000061	exon9	c.G838T	p.E280X	CTTACTCATACAT	.	69	11	69	0	.	0	0	0	0	0	4
ARMCX3	51566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100880257	100880257	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARMCX3-131	NM_016607	exon5	c.C288A	p.A96A	AAGGGCCAGGGCT	.	93	23	127	0	.	0	0	0	0	0	5
NXF5	55998	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	101096062	101096062	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NXF5-204	NM_032946	exon8	c.G406T	p.D136Y	CAATGTCACGGCC	.	433	147	502	1	.	0	0	0	0	0	3
BEX5	340542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101409039	101409039	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BEX5-86	NM_001012978	exon3	c.G199A	p.D67N	CCATATCATCTCC	.	167	34	201	0	.	0	0	0	0	0	5
GPRASP1	9737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101909810	101909810	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPRASP1-131	NM_001099411	exon3	c.T969A	p.A323A	GAGAGCTGGGAAG	.	46	25	70	0	.	0	0	0	0	0	5
GPRASP2	114928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101970728	101970728	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPRASP2-131	NM_138437	exon4	c.G931T	p.E311X	AGGGAGGAGGCAA	.	153	41	139	0	.	0	0	0	0	0	5
BEX1	55859	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	102317893	102317893	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BEX1-109	NM_018476	exon3	c.A310G	p.S104G	GCAGACTATGACT	.	290	62	252	1	.	0	0	0	0	0	3
NXF3	56000	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102334159	102334159	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NXF3-205	NM_022052	exon16	c.G1368T	p.V456V	CTTGAACACCCCG	.	432	194	481	2	.	0	0	0	0	0	4
BEX4	56271	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	102471392	102471392	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BEX4-62	NM_001080425	exon3	c.G311T	p.R104L	ATATGCGCTTCCA	.	323	118	309	2	.	0	0	0	0	0	3
TCEAL1	9338	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102884854	102884854	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TCEAL1-131	NM_001006639	exon3	c.C10A	p.P4T	GACAAACCACGCA	.	71	18	66	1	.	0	0	0	0	0	4
SLC25A53	401612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	103349892	103349892	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001012755	exon2	c.C49A	p.R17R	CTGCTCGCGTCCT	.	209	69	208	0	.	0	0	0	0	0	5
TEX13A	56157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	104464179	104464179	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TEX13A-132	NM_031274	exon5	c.G697T	p.A233S	TGGAGGCAGCCCT	.	48	14	47	0	.	0	0	0	0	0	5
TEX13A	56157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	104465051	104465051	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TEX13A-132	NM_031274	exon2	c.G31T	p.G11W	GGAACCCGCTACT	.	90	33	71	0	.	0	0	0	0	0	5
IL1RAPL2	26280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	105011209	105011209	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IL1RAPL2-194	NM_017416	exon11	c.C1616A	p.S539Y	AGGGATCCAAAAG	.	162	62	190	0	.	0	0	0	0	0	5
NRK	203447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	105132287	105132287	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NRK-630	NM_198465	exon5	c.G253T	p.D85Y	CCATAGGATGAGG	.	393	145	405	1	.	0	0	0	0	0	4
NRK	203447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	105153825	105153825	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NRK-630	NM_198465	exon13	c.G2192T	p.W731L	GCAGATGGGAAGA	.	273	68	295	0	.	0	0	0	0	0	5
NRK	203447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	105178368	105178368	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NRK-630	NM_198465	exon20	c.C3431G	p.S1144C	ATTTTTCTGCCAA	.	320	92	298	0	.	0	0	0	0	0	5
NRK	203447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	105187993	105187993	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NRK-630	NM_198465	exon24	c.C4019A	p.A1340E	TTTATGCATGGGC	.	364	115	304	0	.	0	0	0	0	0	5
NRK	203447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	105197070	105197070	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NRK-630	NM_198465	exon28	c.A4558G	p.I1520V	AAGGCCATTGAAG	.	299	130	239	0	.	0	0	0	0	0	5
SERPINA7	6906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	105279361	105279361	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SERPINA7-226	NM_000354	exon3	c.C638T	p.P213L	TCAAAAGGATTTG	.	115	34	140	0	.	0	0	0	0	0	5
TBC1D8B	54885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	106083404	106083404	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBC1D8B-133	NM_198881	exon9	c.G1480T	p.G494X	TTAAGAGGAGAAC	.	392	131	394	0	.	0	0	0	0	0	5
CLDN2	9075	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	106172103	106172103	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLDN2-131	NM_001171092	exon2	c.C645A	p.P215P	ACCTCCCAAAGTC	.	130	40	104	1	.	0	0	0	0	0	4
MORC4	79710	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	106185911	106185911	+	Missense_Mutation	SNP	G	G	T	rs150736453	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MORC4-131	NM_001085354	exon15	c.C2210A	p.S737Y	GCAGCAGAGGCCA	.	184	71	130	2	G|1.000;A|0.000	0	0	0	0	0	3
COL4A6	1288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107420097	107420097	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL4A6-199	NM_001847	exon28	c.G2663T	p.G888V	GGCAACCCAGCGA	.	166	60	123	0	.	0	0	0	0	0	5
COL4A5	1287	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	107911571	107911571	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL4A5-133	NM_000495	exon41	c.A3627T	p.L1209F	AGGATTACCTGGG	.	294	78	274	2	.	0	0	0	0	0	3
IRS4	8471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107976957	107976957	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IRS4-623	NM_003604	exon1	c.C2618T	p.P873L	TTTGAAGGTGATC	.	117	35	137	0	.	0	0	0	0	0	5
GUCY2F	2986	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	108708517	108708517	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GUCY2F-540	NM_001522	exon3	c.C886A	p.R296R	GGACCCGGTAGGG	.	234	84	212	1	.	0	0	0	0	0	3
AMMECR1	9949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	109507776	109507776	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AMMECR1-130	NM_015365	exon2	c.C525G	p.C175W	ACCTATGCATCCA	.	375	105	334	0	.	0	0	0	0	0	5
RGAG1	57529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	109696335	109696335	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RGAG1-132	NM_020769	exon3	c.G2490C	p.M830I	TGGAATGATGTCA	.	187	60	175	0	.	0	0	0	0	0	5
CAPN6	827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	110490730	110490730	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CAPN6-195	NM_014289	exon12	c.G1609T	p.V537L	GGTTTACAGCTGG	.	149	51	139	0	.	0	0	0	0	0	5
DCX	1641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	110653544	110653544	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DCX-554	NM_000555	exon2	c.G326A	p.S109N	GTGGGGCTAGGCA	.	227	72	197	0	.	0	0	0	0	0	5
ALG13	79868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	110964940	110964940	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALG13-130	NM_001257230	exon12	c.1123+1G>T	.	GAAAAGGTAAAGA	.	125	24	126	0	.	0	0	0	0	0	5
TRPC5	7224	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	111025191	111025191	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPC5-130	NM_012471	exon8	c.G2072A	p.R691Q	CTTCTCCGTCTAC	.	159	49	137	2	.	0	0	0	0	0	3
ZCCHC16	340595	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	111698228	111698228	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZCCHC16-91	NM_001004308	exon3	c.C272A	p.A91E	ATCCTGCAAATGA	.	153	36	139	1	.	0	0	0	0	0	4
ZCCHC16	340595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	111698591	111698591	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZCCHC16-91	NM_001004308	exon3	c.G635C	p.C212S	CTCAGTGCATTCA	.	333	114	325	0	.	0	0	0	0	0	5
LUZP4	51213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	114540824	114540824	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LUZP4-132	NM_016383	exon4	c.G397C	p.E133Q	CAGTCAGAGGGGA	.	302	106	258	0	.	0	0	0	0	0	5
SLC6A14	11254	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	115568956	115568956	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC6A14-133	NM_007231	exon2	c.49-2A>C	.	TTCCCCAGAAAGT	.	61	13	67	0	.	0	0	0	0	0	3
CXorf61	203413	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	115593996	115593996	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CXorf61-130	NM_001017978	exon1	c.G22A	p.A8T	TGCTCGCTAGGAG	.	405	155	367	2	.	0	0	0	0	0	3
KLHL13	90293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	117043644	117043644	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLHL13-556	NM_001168299	exon6	c.A995T	p.Q332L	TCTGACTGCATAA	.	190	71	203	0	.	0	0	0	0	0	5
KLHL13	90293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	117043657	117043657	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLHL13-556	NM_001168299	exon6	c.C982A	p.Q328K	CTGGCTGCATATA	.	195	78	201	0	.	0	0	0	0	0	5
DOCK11	139818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	117700598	117700598	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DOCK11-93	NM_144658	exon9	c.G933T	p.M311I	GAGCATGCATCCG	.	356	129	292	0	.	0	0	0	0	0	5
KIAA1210	57481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	118215375	118215375	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1210-67	NM_020721	exon14	c.G5047C	p.V1683L	GCTCAACTGGGTT	.	185	64	148	0	.	0	0	0	0	0	5
KIAA1210	57481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	118221793	118221793	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1210-67	NM_020721	exon11	c.C3400A	p.Q1134K	ACAGTTGCTGGAC	.	142	34	146	0	.	0	0	0	0	0	5
KIAA1210	57481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	118222705	118222705	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1210-67	NM_020721	exon11	c.G2488T	p.E830X	GCTCCTCCTCAGA	.	19	6	33	0	.	0	0	0	0	0	4
PGRMC1	10857	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	118370647	118370647	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PGRMC1-130	NM_006667	exon1	c.C321A	p.Y107X	ATTCTACGGGCCC	.	245	79	121	0	.	0	0	0	0	0	4
PGRMC1	10857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	118374361	118374361	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PGRMC1-130	NM_006667	exon2	c.G418C	p.D140H	GAGTACGATGACC	.	151	43	139	0	.	0	0	0	0	0	5
NKRF	55922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	118723944	118723944	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NKRF-131	NM_001173487	exon4	c.G1489C	p.V497L	GAATCACTTTGCA	.	54	22	55	0	.	0	0	0	0	0	5
SEPT6	23157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	118763333	118763333	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEPT6-969	NM_145802	exon9	c.G1228A	p.G410S	GGGAGCCCTGGGA	.	106	17	75	0	.	0	0	0	0	0	4
AKAP14	158798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	119048832	119048832	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AKAP14-226	NM_178813	exon5	c.C432A	p.T144T	CAAAACCAAACCA	.	134	36	103	0	.	0	0	0	0	0	5
CT47B1	643311	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	120009189	120009189	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145718	exon1	c.C336G	p.T112T	CCGACGGGTGGCC	.	638	230	416	1	.	0	0	0	0	0	4
GRIA3	2892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	122532571	122532571	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRIA3-134	NM_000828	exon7	c.C997A	p.R333R	GTGTCCCGGAGAG	.	218	64	202	0	.	0	0	0	0	0	5
THOC2	57187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	122747368	122747368	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	THOC2-133	NM_001081550	exon36	c.C4559T	p.S1520F	TAAGGAGATTCAC	.	27	15	20	0	.	0	0	0	0	0	5
THOC2	57187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	122755031	122755031	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	THOC2-133	NM_001081550	exon31	c.C4193G	p.S1398X	ATATCTGATCTGG	.	69	16	66	0	.	0	0	0	0	0	5
TENM1	10178	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	123657285	123657285	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001163278	exon17	c.G2962T	p.V988L	GAAGCACAATAGG	.	192	70	189	1	.	0	0	0	0	0	4
TENM1	10178	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	123680874	123680874	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001163278	exon15	c.G2501T	p.C834F	CCCTGGCAGAGAG	.	206	76	216	1	.	0	0	0	0	0	3
TENM1	10178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	123870853	123870853	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001163278	exon4	c.C730T	p.L244L	TATGCAGATGGAC	.	97	31	91	0	.	0	0	0	0	0	5
DCAF12L2	340578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	125299535	125299535	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DCAF12L2-113	NM_001013628	exon1	c.G373T	p.V125L	ACTGCACGTCCAC	.	452	154	319	0	.	0	0	0	0	0	5
DCAF12L1	139170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	125686226	125686226	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DCAF12L1-132	NM_178470	exon1	c.G366C	p.V122V	GTCCACCACGAAA	.	629	200	431	1	.	0	0	0	0	0	5
CXorf64	100130613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	125954967	125954967	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001122716	exon2	c.G346T	p.A116S	GCACTGGCAGGCT	.	279	103	247	0	.	0	0	0	0	0	5
ACTRT1	139741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	127185766	127185766	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACTRT1-133	NM_138289	exon1	c.T420A	p.H140Q	CACCGCATGATTA	.	219	68	208	0	.	0	0	0	0	0	5
SMARCA1	6594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	128649928	128649928	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMARCA1-230	NM_139035	exon4	c.C472A	p.L158M	CAGACAGTAGCTC	.	151	63	137	0	.	0	0	0	0	0	5
XPNPEP2	7512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	128888456	128888456	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	XPNPEP2-130	NM_003399	exon12	c.C1116T	p.D372D	GCGGGACGCTGTG	.	131	38	95	0	.	0	0	0	0	0	5
ZDHHC9	51114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	128940383	128940383	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZDHHC9-131	NM_001008222	exon10	c.C1058A	p.P353Q	GGCTCTGGGGGCT	.	96	29	85	0	.	0	0	0	0	0	5
UTP14A	10813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129053172	129053172	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UTP14A-132	NM_006649	exon7	c.G559A	p.E187K	GAGCAGGAAATTT	.	173	33	146	0	.	0	0	0	0	0	5
BCORL1	63035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129148844	129148844	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BCORL1-294	NM_021946	exon3	c.C2096A	p.P699Q	GGGACCCGAGCAC	.	229	76	188	1	.	0	0	0	0	0	4
BCORL1	63035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129154972	129154972	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BCORL1-294	NM_021946	exon4	c.C3454A	p.P1152T	AAGCTGCCCAGTG	.	174	66	153	1	.	0	0	0	0	0	4
BCORL1	63035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129173157	129173157	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BCORL1-294	NM_021946	exon9	c.G4518T	p.W1506C	CATCTGGCTCCTG	.	148	41	130	0	.	0	0	0	0	0	5
AIFM1	9131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129289211	129289211	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AIFM1-586	NM_145812	exon2	c.G157T	p.G53C	AAGCACCTGTAGA	.	227	82	164	0	.	0	0	0	0	0	5
ENOX2	10495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129843245	129843245	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ENOX2-131	NM_182314	exon4	c.G21T	p.W7C	CCACAGCCATCTA	.	192	63	159	0	.	0	0	0	0	0	5
ARHGAP36	158763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	130222738	130222738	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGAP36-133	NM_144967	exon12	c.C1623G	p.G541G	AACTGGCGTCAGC	.	116	37	125	0	.	0	0	0	0	0	5
FRMD7	90167	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	131214283	131214283	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FRMD7-228	NM_194277	exon10	c.A917G	p.Q306R	TGCCTTTGGGTTC	.	205	60	185	1	.	0	0	0	0	0	3
RAP2C	57826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	131348263	131348263	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAP2C-848	NM_021183	exon3	c.G485T	p.R162M	ATTTGCCTGACGA	.	447	150	417	0	.	0	0	0	0	0	5
DDX26B	203522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	134679347	134679347	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DDX26B-226	NM_182540	exon3	c.190-1G>T	.	TTTGCAGGCTGGT	.	138	49	117	0	.	0	0	0	0	0	4
DDX26B	203522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134707987	134707987	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DDX26B-226	NM_182540	exon12	c.G1630C	p.D544H	GATGAAGGTAAAA	.	208	65	242	0	.	0	0	0	0	0	5
SAGE1	55511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134992242	134992242	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SAGE1-133	NM_018666	exon15	c.G1777T	p.A593S	CAAGCAGCATCCG	.	270	90	295	0	.	0	0	0	0	0	5
SLC9A6	10479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135098854	135098854	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC9A6-131	NM_001042537	exon10	c.G1287T	p.M429I	CTACATGGGGCTG	.	100	40	101	0	.	0	0	0	0	0	5
SLC9A6	10479	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	135112310	135112310	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC9A6-131	NM_001042537	exon13	c.C1636A	p.Q546K	TCAGACCAAGAAC	.	181	69	150	2	.	0	0	0	0	0	3
FHL1	2273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	135288629	135288629	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FHL1-130	NM_001159701	exon2	c.C125G	p.P42R	GGGATCCCTTGCA	.	447	77	439	1	.	0	0	0	0	0	3
MAP7D3	79649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135313958	135313958	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAP7D3-110	NM_024597	exon8	c.G1158A	p.P386P	CGCCTCCGGGGAT	.	137	60	120	0	.	0	0	0	0	0	5
GPR112	139378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135428212	135428212	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR112-183	NM_153834	exon6	c.G2347C	p.V783L	ACTGTTGTTCCAT	.	250	87	286	0	.	0	0	0	0	0	5
GPR112	139378	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	135430562	135430562	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR112-183	NM_153834	exon6	c.C4697A	p.P1566Q	CAATACCAGTTAA	.	241	72	224	1	.	0	0	0	0	0	3
GPR112	139378	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	135474475	135474475	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR112-183	NM_153834	exon17	c.C7996A	p.P2666T	GCTGACCCAGTGG	.	302	80	294	1	.	0	0	0	0	0	3
FGF13	2258	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	137790993	137790993	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FGF13-626	NM_001139500	exon4	c.G315T	p.E105D	GCTGTCCTCATCT	.	131	35	126	2	.	0	0	0	0	0	3
MCF2	4168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	138699719	138699719	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MCF2-227	NM_001171876	exon11	c.C1132A	p.R378R	GTATCCGTTTTGC	.	115	35	112	0	.	0	0	0	0	0	5
MAGEC1	9947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	140993233	140993233	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAGEC1-133	NM_005462	exon4	c.C43G	p.L15V	AGTCTTCTCCAGA	.	114	29	99	0	.	0	0	0	0	0	5
MAGEC2	51438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	141291129	141291129	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAGEC2-193	NM_016249	exon3	c.C645A	p.T215T	CTCATCGGTGAGG	.	261	101	253	0	.	0	0	0	0	0	5
SPANXN3	139067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	142605191	142605191	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPANXN3-132	NM_001009609	exon1	c.G29T	p.G10V	TTCTCCCCATTGG	.	118	31	111	0	.	0	0	0	0	0	5
SLITRK4	139065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	142717517	142717517	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLITRK4-193	NM_001184750	exon2	c.G1408A	p.D470N	TGGAGTCAAAGGT	.	165	66	168	0	.	0	0	0	0	0	5
UBE2NL	389898	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	142967266	142967266	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBE2NL-226	NM_001012989	exon1	c.G64T	p.G22C	GTTCCTGGCATCA	.	211	79	212	1	.	0	0	0	0	0	3
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	144904123	144904123	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLITRK2-136	NM_001144005	exon5	c.C180A	p.P60P	GCCCCCCCAGTAT	.	185	64	188	0	.	0	0	0	0	0	5
SLITRK2	84631	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	144905093	144905093	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLITRK2-136	NM_001144005	exon5	c.G1150T	p.G384W	CTAACAGGGAACT	.	206	87	202	1	.	0	0	0	0	0	3
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	144905170	144905170	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLITRK2-136	NM_001144005	exon5	c.C1227A	p.N409K	AAACAACAGGATT	.	257	66	242	0	.	0	0	0	0	0	5
FMR1	2332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	147030346	147030346	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FMR1-133	NM_001185075	exon16	c.C1610A	p.S537X	ACCACTCGTGAAT	.	216	60	192	0	.	0	0	0	0	0	5
AFF2	2334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	148049222	148049222	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AFF2-135	NM_002025	exon15	c.G3267T	p.L1089L	TGCACTGGTAAGT	.	77	28	65	0	.	0	0	0	0	0	5
IDS	3423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	148582538	148582538	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IDS-130	NM_006123	exon4	c.C449A	p.P150Q	CTATACGGAGAAT	.	90	26	83	0	.	0	0	0	0	0	5
MAGEA11	4110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	148797322	148797322	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAGEA11-132	NM_005366	exon4	c.C251A	p.T84N	GGATCACTGGAGG	.	227	81	206	0	.	0	0	0	0	0	5
MAMLD1	10046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	149639349	149639349	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAMLD1-130	NM_005491	exon3	c.C1504A	p.Q502K	CAGCAGCAAGCAA	.	294	104	250	0	.	0	0	0	0	0	5
MTM1	4534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	149818249	149818249	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MTM1-228	NM_000252	exon10	c.G928C	p.D310H	TTCTTAGACATTC	.	174	54	152	0	.	0	0	0	0	0	5
MTMR1	8776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	149905230	149905230	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MTMR1-131	NM_003828	exon10	c.C1220A	p.T407K	ATGGGACGCATTG	.	148	49	170	0	.	0	0	0	0	0	5
GPR50	9248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	150349375	150349375	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR50-176	NM_004224	exon2	c.G1320T	p.K440N	CCCTAAGCCTGCC	.	152	53	118	0	.	0	0	0	0	0	5
FATE1	89885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	150891194	150891194	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FATE1-131	NM_033085	exon5	c.C515G	p.A172G	TGTCGGCCAGCAT	.	470	159	386	1	.	0	0	0	0	0	5
CNGA2	1260	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	150911588	150911588	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNGA2-193	NM_005140	exon7	c.G613T	p.V205F	CTGCTGGTCAAAG	.	205	65	240	1	.	0	0	0	0	0	3
CNGA2	1260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	150911921	150911921	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNGA2-193	NM_005140	exon7	c.G946T	p.E316X	GACCCTGAGTATG	.	319	93	296	0	.	0	0	0	0	0	5
CNGA2	1260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	150912769	150912769	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNGA2-193	NM_005140	exon7	c.G1794A	p.Q598Q	CGTGCAGGAGAAG	.	172	65	180	0	.	0	0	0	0	0	5
MAGEA4	4103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	151092271	151092271	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAGEA4-194	NM_001011548	exon3	c.T135A	p.P45P	CTCTCCTCTGGTC	.	409	134	316	0	.	0	0	0	0	0	5
PNMA5	114824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152159412	152159412	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PNMA5-131	NM_001103150	exon2	c.C731G	p.S244C	AACTGAGAGGCTC	.	57	25	51	0	.	0	0	0	0	0	5
PNMA3	29944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152226512	152226512	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PNMA3-600	NM_013364	exon2	c.C1100T	p.P367L	CAGTACCTCTCCC	.	179	53	169	0	.	0	0	0	0	0	5
PNMA3	29944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152226745	152226745	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PNMA3-600	NM_013364	exon2	c.G1333C	p.E445Q	GCAGTTGAGTCGG	.	287	97	220	0	.	0	0	0	0	0	5
MAGEA1	4100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152482814	152482814	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAGEA1-622	NM_004988	exon3	c.C197A	p.T66N	ATGGTAGTGGGAA	.	419	100	358	0	.	0	0	0	0	0	5
TREX2	11219	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	152710779	152710779	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TREX2-227	NM_080701	exon2	c.G110T	p.R37L	GAGGAGCGGTGGA	.	447	156	277	1	.	0	0	0	0	0	3
ATP2B3	492	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	152807877	152807877	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP2B3-109	NM_001001344	exon4	c.C761A	p.S254X	GCAAGTCAGCTGA	.	298	114	205	1	.	0	0	0	0	0	3
ATP2B3	492	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	152823605	152823605	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP2B3-109	NM_001001344	exon15	c.C2469A	p.S823S	GGCCTCCGACATC	.	638	220	555	2	.	0	0	0	0	0	3
PNCK	139728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152936621	152936621	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PNCK-207	NM_001039582	exon8	c.C888A	p.Y296X	CTCGTCGTAGAAG	.	103	34	109	0	.	0	0	0	0	0	5
SLC6A8	6535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152958807	152958807	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC6A8-131	NM_005629	exon6	c.C1002A	p.N334K	CTTCAACAACAAC	.	361	121	269	0	.	0	0	0	0	0	5
PLXNB3	5365	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	153036070	153036070	+	Silent	SNP	C	C	A	rs143446986	unknown;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLXNB3-130	NM_001163257	exon11	c.C2052A	p.G684G	AGAGGGCGAGAGG	.	301	97	240	1	C|1.000;T|0.000	0	0	0	0	0	3
PLXNB3	5365	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153036423	153036423	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLXNB3-130	NM_001163257	exon13	c.C2209A	p.L737M	CAGGGCCTGCCTG	.	333	119	263	1	.	0	0	0	0	0	4
PLXNB3	5365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153042416	153042416	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLXNB3-130	NM_001163257	exon30	c.G4977T	p.Q1659H	GGCCCAGAGGTGC	.	330	128	311	0	.	0	0	0	0	0	5
IDH3G	3421	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153055722	153055722	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IDH3G-90	NM_004135	exon4	c.G161C	p.R54P	GTGTGCCGCCCGC	.	311	82	309	1	.	0	0	0	0	0	3
L1CAM	3897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153133825	153133825	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	L1CAM-138	NM_000425	exon13	c.C1635A	p.P545P	CAAGGAGGGGTCA	.	318	123	270	0	.	0	0	0	0	0	5
HCFC1	3054	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	153220099	153220099	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HCFC1-132	NM_005334	exon17	c.G3751T	p.E1251X	GGGGCTCCCCAGC	.	147	59	42	1	.	0	0	0	0	0	3
G6PD	2539	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153762677	153762677	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	G6PD-135	NM_000402	exon6	c.G610C	p.G204R	CCCTCCCGAAGGG	.	164	72	161	1	.	0	0	0	0	0	4
GAB3	139716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153927602	153927602	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GAB3-227	NM_001081573	exon6	c.C1312A	p.P438T	TCACTGGGGGAGG	.	172	65	129	0	.	0	0	0	0	0	5
DKC1	1736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	154001499	154001499	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DKC1-227	NM_001363	exon11	c.C1130A	p.P377H	CTTACCCTCGGAA	.	588	237	454	0	.	0	0	0	0	0	5
F8	2157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	154157538	154157538	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	F8-182	NM_000132	exon14	c.C4527G	p.G1509G	AACTTTGCCAGAT	.	103	35	70	0	.	0	0	0	0	0	5
F8	2157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	154158316	154158316	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	F8-182	NM_000132	exon14	c.G3749T	p.S1250I	CTAGTGCTCAGTA	.	64	26	52	0	.	0	0	0	0	0	5
F8	2157	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	154176151	154176151	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	F8-182	NM_000132	exon13	c.G1935A	p.Q645Q	TGACAACTGCAAA	.	182	75	133	2	.	0	0	0	0	0	3
MPL	4352	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	43818247	43818248	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MPL-9885	NM_005373	exon12	c.1712_1713insC	p.L571fs	AAATCCTCCCCAA	.	215	47	176	0	.	0	0	0	0	0	3
OR10X1	128367	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158549352	158549353	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR10X1-69	NM_001004477	exon1	c.338_339insT	p.C113fs	AAGCTACAACCTG	.	563	61	370	0	.	0	0	0	0	0	3
NLRP10	338322	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	7981838	7981839	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRP10-209	NM_176821	exon2	c.1321_1322insA	p.P441fs	GCCTGGGGCCATC	.	54	30	66	0	.	0	0	0	0	0	3
MED13L	23389	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	116444164	116444165	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MED13L-232	NM_015335	exon12	c.2291_2292insG	p.P764fs	GGCACCGGCGTGG	.	127	77	157	0	.	0	0	0	0	0	3
CRAMP1L	57585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	1706047	1706048	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_020825	exon9	c.1289_1290insC	p.G430fs	AGGGCGGCCGGTG	.	141	59	55	0	.	0	0	0	0	0	3
EFTUD2	9343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	42930702	42930703	+	Frame_Shift_Ins	INS	-	-	TC	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EFTUD2-91	NM_004247	exon25	c.2523_2524insGA	p.D841fs	GACGCAATCTGCA	.	109	43	117	0	.	0	0	0	0	0	3
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	85722990	85722991	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDFY3-93	NM_014991	exon17	c.2635_2636insT	p.A879fs	TATTTGCCACGGC	.	114	26	128	0	.	0	0	0	0	0	3
FYB	2533	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	39202214	39202215	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FYB-24	NM_001243093	exon2	c.879_880insA	p.K293fs	ATCTTCCTTTTTT	.	67	20	58	0	.	0	0	0	0	0	3
TNPO1	3842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	72199544	72199545	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNPO1-228	NM_002270	exon23	c.2523_2524insT	p.I841fs	TTTTATATTTTTT	.	46	24	79	0	.	0	0	0	0	0	3
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	237954769	237954770	+	Missense_Mutation	DNP	CC	CC	AA	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RYR2-158	NM_001035	exon93	c.C13518A	p.A4512E	GTTAGCCTTATTT	.	139	8	99	0	.	0	0	0	0	0	4
CTNNA3	29119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	68139070	68139071	+	Missense_Mutation	DNP	GG	GG	TT	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTNNA3-234	NM_013266	exon12	c.C1571A	p.A524E	CTTAAGGCTATGA	.	123	7	115	0	.	0	0	0	0	0	4
HMX2	3167	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	124907940	124907941	+	Missense_Mutation	DNP	GG	GG	TT	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HMX2-90	NM_005519	exon1	c.G47T	p.G16F	CCGGTGGCGTCTC	.	226	13	102	0	.	0	0	0	0	0	3
OR4C6	219432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55433022	55433023	+	Missense_Mutation	DNP	CC	CC	AA	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4C6-70	NM_001004704	exon1	c.C381A	p.P127Q	TAAGCCCCTGCAC	.	98	13	115	0	.	0	0	0	0	0	4
MYBPC1	4604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	102055036	102055037	+	Missense_Mutation	DNP	CC	CC	AA	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYBPC1-94	NM_206819	exon20	c.C2029A	p.L652I	CCAATCCTAGGTA	.	54	10	87	0	.	0	0	0	0	0	4
FAM65A	79567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67579578	67579579	+	Missense_Mutation	DNP	CG	CG	TT	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CG	CG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM65A-92	NM_001193523	exon19	c.G3263T	p.R1088L	TGGTGCGGAATCT	.	118	21	141	0	.	0	0	0	0	0	4
PIPOX	51268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27383223	27383224	+	Missense_Mutation	DNP	GG	GG	AA	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIPOX-90	NM_016518	exon8	c.G1074A	p.G358E	GGTGGGGAAGATC	.	104	12	133	0	.	0	0	0	0	0	4
RBFOX3	146713	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	77111616	77111617	+	Missense_Mutation	DNP	TC	TC	AA	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001082575	exon5	c.G181T	p.E61L	TGGCCTCGGAGCC	.	22	2	26	0	.	0	0	0	0	0	3
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179481738	179481739	+	Missense_Mutation	DNP	CA	CA	TT	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_001267550	exon256	c.T47877A	p.E13392K	TGGTTCAACTACA	.	31	2	46	0	.	0	0	0	0	0	4
KRTAP15-1	254950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	31812927	31812928	+	Missense_Mutation	DNP	CC	CC	AA	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRTAP15-1-90	NM_181623	exon1	c.C283A	p.L95I	AGATCCCTTGGAT	.	119	35	107	0	.	0	0	0	0	0	4
COL6A5	256076	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	130159376	130159377	+	Missense_Mutation	DNP	CC	CC	AA	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_153264	exon35	c.C6195A	p.T2065K	GTGGACCACTGAA	.	146	30	126	0	.	0	0	0	0	0	3
TM4SF1	4071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	149095253	149095254	+	Missense_Mutation	DNP	GC	GC	TT	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TM4SF1-90	NM_014220	exon1	c.G81A	p.L28I	GTAAAGCAAAATA	.	241	30	276	0	.	0	0	0	0	0	4
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	187539244	187539245	+	Missense_Mutation	DNP	CC	CC	AA	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAT1-34	NM_005245	exon10	c.G8495T	p.R2834I	GATGCCCTGATCT	.	64	3	112	0	.	0	0	0	0	0	4
HCN1	348980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	45262200	45262201	+	Missense_Mutation	DNP	CC	CC	AA	novel	unknown	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HCN1-91	NM_021072	exon8	c.G2495T	p.R832I	GTGCTCCTGCCCC	.	70	7	44	0	C|0.999;G|0.000	0	0	0	0	0	4
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22180824	22180824	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HSPG2-141	NM_005529	exon50	c.C6301G	p.R2101G	GCAGACGGGAGCC	.	53	45	49	0	.	12	5	7	0	0	5
C11orf63	79864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	122817236	122817236	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C11orf63-93	NM_024806	exon6	c.G1665T	p.T555T	CCAGACGGTTAGA	.	99	90	113	0	.	0	0	0	0	0	5
MLL2	8085	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49445552	49445552	+	Silent	SNP	T	T	G	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLL2-612	NM_003482	exon10	c.A1914C	p.P638P	TTCAGGTGGTGGG	.	22	16	39	1	.	3	0	3	0	0	4
HCAR1	27198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123214708	123214708	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HCAR1-156	NM_032554	exon1	c.C179G	p.A60G	AAATCAGCCACGG	.	75	68	90	0	.	0	0	0	0	0	5
SLITRK5	26050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	88330510	88330517	+	Frame_Shift_Del	DEL	GCCAGTTC	GCCAGTTC	-	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	GCCAGTTC	GCCAGTTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLITRK5-94	NM_015567	exon2	c.2867_2874del	p.956_958del	CGTTTAGCCAGTT	.	17	14	47	0	.	0	0	0	0	0	3
PAPOLA	10914	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	96987355	96987355	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAPOLA-68	NM_001252006	exon3	c.G195T	p.L65F	AATTTTGGGAAAA	.	181	81	156	1	.	167	79	88	0	0	3
ZNF774	342132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	90904066	90904066	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF774-90	NM_001004309	exon4	c.G1003C	p.V335L	CATTTTGTAGCTC	.	40	4	59	0	.	0	0	0	0	0	4
PDILT	204474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	20384188	20384188	+	Missense_Mutation	SNP	C	C	A	rs193085306	unknown;alternate_allele	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDILT-153	NM_174924	exon7	c.G854T	p.S285I	TCGGAGCTTTTGG	.	173	78	88	0	C|0.999;T|0.000	0	0	0	0	0	5
ADAMTS18	170692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	77389876	77389876	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS18-1036	NM_199355	exon9	c.G1421T	p.W474L	GAAGACCATGAAA	.	172	88	114	0	.	0	0	0	0	0	5
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7574012	7574012	+	Nonsense_Mutation	SNP	C	C	A	rs17882252	byfrequency;alternate_allele	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TP53-70225	NM_000546	exon10	c.G1015T	p.E339X	ACATCTCGAAGCG	.	105	89	136	0	C|0.994;T|0.006	3	0	3	0	0	5
C17orf66	256957	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	34190106	34190106	+	Silent	SNP	G	G	T	rs142219051	unknown;alternate_allele	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C17orf66-155	NM_152781	exon8	c.C649A	p.R217R	GAGCCCGGATCAC	.	44	4	42	0	G|1.000;A|0.000	0	0	0	0	0	3
CHST9	83539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	24497051	24497051	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHST9-93	NM_031422	exon6	c.G504T	p.W168C	TTTCTTCCATTTA	.	53	45	85	0	.	0	0	0	0	0	5
ZNF77	58492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2934196	2934196	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF77-91	NM_021217	exon4	c.C929G	p.S310C	CTAAAGGAGGAGT	.	275	115	145	0	.	7	2	5	0	0	5
ANKRD24	170961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4216002	4216002	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD24-68	NM_133475	exon16	c.G1225A	p.V409I	TATGACGTAACCA	.	119	54	49	0	.	5	5	0	0	0	5
ZNF546	339327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40520223	40520223	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF546-155	NM_178544	exon7	c.G1046T	p.R349I	ATCAAAGAATTCA	.	160	78	75	0	.	0	0	0	0	0	5
TSPYL6	388951	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	54482557	54482557	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TSPYL6-90	NM_001003937	exon1	c.C732A	p.I244I	GCGAATGATGTCA	.	72	5	90	0	.	0	0	0	0	0	3
SMARCAL1	50485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	217341854	217341854	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMARCAL1-293	NM_014140	exon16	c.G2450A	p.R817H	AGGACCGCGTGCA	.	86	76	98	0	.	23	1	21	0	1	5
MANBA	4126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	103644191	103644191	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MANBA-91	NM_005908	exon4	c.A386G	p.D129G	GTAATATCAAAGC	.	120	48	78	0	.	0	0	0	0	0	5
CDH12	1010	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	21752043	21752043	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH12-92	NM_004061	exon15	c.G2188T	p.A730S	GTGGGGCAGTTGG	.	350	131	162	1	.	0	0	0	0	0	4
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	90124769	90124769	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR98-103	NM_032119	exon77	c.G16377T	p.Q5459H	ACCACAGGTTGAA	.	32	22	27	0	.	0	0	0	0	0	5
HLA-G	3135	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	29797691	29797691	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HLA-G-517	NM_002127	exon6	c.T994C	p.W332R	GTGCTGTGGAGAA	.	272	125	163	0	.	0	0	0	0	0	4
DDR1	780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30866949	30866949	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DDR1-1403	NM_013994	exon17	c.C2636T	p.P879L	CCCGGCCGCCTGC	.	198	91	102	0	.	289	128	161	0	0	5
CYP21A2	1589	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	32006983	32006983	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CYP21A2-68	.	.	.	.	TGACTCCATGGAG	.	480	199	214	0	.	1524	832	692	0	0	3
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106968127	106968127	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AIM1-139	NM_001624	exon2	c.C1820T	p.S607F	AACACTCTCATTG	.	139	51	108	0	.	1	1	0	0	0	5
AIM1	202	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106968157	106968157	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AIM1-139	NM_001624	exon2	c.C1850T	p.S617F	CAAAATCTGGCCC	.	135	53	108	0	.	1	1	0	0	0	4
AIM1	202	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106968170	106968170	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AIM1-139	NM_001624	exon2	c.C1863T	p.V621V	ACAAGTCATACCG	.	136	47	106	0	.	1	1	0	0	0	4
AIM1	202	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106968252	106968252	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AIM1-139	NM_001624	exon2	c.C1945T	p.P649S	TCCAGTCCCACCA	.	179	64	149	0	.	2	2	0	0	0	4
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106968291	106968291	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AIM1-139	NM_001624	exon2	c.C1984T	p.P662S	GCCACTCCTCAAA	.	172	61	156	0	.	1	1	0	0	0	5
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106968355	106968355	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AIM1-139	NM_001624	exon2	c.C2048T	p.S683F	ACATTTCTGCTGG	.	105	35	95	0	.	0	0	0	0	0	5
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106978066	106978066	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AIM1-139	NM_001624	exon6	c.C3370T	p.H1124Y	GTTAGTCACATTG	.	178	85	100	0	.	0	0	0	0	0	5
TRAF3IP2	10758	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	111912951	111912951	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRAF3IP2-228	NM_147686	exon2	c.C339T	p.V113V	CTCGCTGACTGCA	.	142	70	86	1	.	13	9	4	0	0	4
FER1L6	654463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	125109589	125109589	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FER1L6-100	NM_001039112	exon36	c.G4773A	p.R1591R	TCCAAGGCGACCC	.	146	61	100	0	.	0	0	0	0	0	5
CCDC171	203238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	15724809	15724809	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_173550	exon14	c.G1527T	p.E509D	TAAAGAGTTAAGT	.	186	69	129	0	.	0	0	0	0	0	5
SMC1A	8243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53430781	53430781	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMC1A-232	NM_006306	exon14	c.C2241G	p.R747R	ATTAATGCGAGGC	.	150	62	110	0	.	45	19	25	1	0	5
CT47B1	643311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	120009056	120009056	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145718	exon1	c.G469A	p.A157T	CAGCAGCGTGGGG	.	622	255	116	0	.	0	0	0	0	0	5
CRIPAK	285464	hgsc.bcm.edu	37	4	1388867	1388867	+	Missense_Mutation	SNP	A	A	C	rs76058011	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRIPAK-90	NM_175918	exon1	c.A568C	p.I190L	CGCCTGATCACAC	.	235	27	15	0	A|0.994;C|0.006	96	8	88	0	0	1
PCDHB3	56132	ucsc.edu	37	5	140482312	140482312	+	Silent	SNP	A	A	G	rs429364	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB3-92	NM_018937	exon1	c.A2079G	p.A693A	GGTGGCATTGGCC	.	138	37	11	0	A|0.977;G|0.023	24	20	4	0	0	1
CYTB	0	broad.mit.edu	37	MT	15191	15191	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361789	exon1	c.T445C	p.L149L	ACAAACTTACTAT	.	7	2	17	0	.	7089	6453	635	0	1	1
FBXO42	54455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	16580181	16580181	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXO42-228	NM_018994	exon7	c.813delC	p.S271fs	CGGCTTGGACCAC	.	80	21	56	0	.	0	0	0	0	0	3
BRDT	676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92446707	92446707	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BRDT-374	NM_001242806	exon10	c.T1734A	p.C578X	GGCATGTCTAAGA	.	57	15	62	0	.	0	0	0	0	0	5
SLC35A3	23443	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	100483292	100483292	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC35A3-90	NM_001271685	exon7	c.A934G	p.K312E	ATTTTAAAAGGAT	.	127	36	143	1	.	0	0	0	0	0	3
PRPF38B	55119	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	109235422	109235425	+	Frame_Shift_Del	DEL	CTTA	CTTA	-	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	CTTA	CTTA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRPF38B-90	NM_018061	exon1	c.209_212del	p.70_71del	CGTCGCCTTACTT	.	379	130	206	0	.	0	0	0	0	0	3
CA14	23632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150232559	150232559	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CA14-91	NM_012113	exon2	c.G69T	p.T23T	CTGGACGTATGAG	.	220	39	192	0	.	0	0	0	0	0	5
SCAMP3	10067	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	155227427	155227429	+	In_Frame_Del	DEL	AGG	AGG	-	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	AGG	AGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCAMP3-93	NM_005698	exon6	c.537_539del	p.179_180del	AAGTTCAGGAGAA	.	224	34	241	0	.	0	0	0	0	0	3
TNNT2	7139	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201338962	201338962	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNNT2-90	NM_001276345	exon5	c.T79A	p.W27R	CTCTCCAGTCCTC	.	170	24	111	1	.	0	0	0	0	0	3
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	237580422	237580422	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RYR2-158	NM_001035	exon11	c.G847A	p.A283T	AGAGTTGCGTAAG	.	178	20	133	0	.	0	0	0	0	0	4
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70406351	70406351	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TET1-663	NM_030625	exon4	c.A3865C	p.T1289P	CAGTTAACGGTGA	.	165	36	152	0	.	0	0	0	0	0	5
HKDC1	80201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71017117	71017117	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HKDC1-95	NM_025130	exon14	c.A1967G	p.D656G	TGAATGATACAGT	.	202	26	139	0	.	0	0	0	0	0	5
SMC3	9126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	112341738	112341738	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMC3-92	NM_005445	exon9	c.C605T	p.T202I	TACATACTCTAGA	.	75	13	66	0	.	0	0	0	0	0	4
OR10A4	283297	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6898684	6898684	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR10A4-69	NM_207186	exon1	c.C806G	p.S269C	CCTCTTCTGAGAG	.	89	19	68	1	.	0	0	0	0	0	3
MRGPRX4	117196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18195200	18195200	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MRGPRX4-91	NM_054032	exon1	c.C397T	p.R133C	CGCTGCCGCCGCC	.	146	28	106	0	.	0	0	0	0	0	5
PPP1CA	5499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	67166486	67166487	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPP1CA-659	NM_001008709	exon5	c.704_705del	p.235_235del	GGTAAAAGAGACG	.	108	25	98	0	.	0	0	0	0	0	3
CCDC81	60494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	86086270	86086270	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC81-91	NM_021827	exon1	c.C65T	p.S22L	TGCCCTCGCTGAG	.	37	11	32	0	.	0	0	0	0	0	4
ATM	472	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	108123627	108123627	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATM-3419	NM_000051	exon12	c.1886delG	p.S629fs	TCCAAAGCGTGCC	.	48	17	42	0	.	0	0	0	0	0	3
KRT78	196374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53233007	53233007	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRT78-188	NM_173352	exon9	c.G1453A	p.D485N	CAGGGTCCTTCCC	.	214	38	125	0	.	0	0	0	0	0	5
AMHR2	269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53822782	53822782	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AMHR2-628	NM_020547	exon7	c.C955T	p.R319C	GAGGAGCGCTGGC	.	51	10	48	0	.	0	0	0	0	0	4
ATXN7L3B	552889	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	74932091	74932092	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	AA	AA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001136262	exon1	c.199_200del	p.67_67del	GAAGACAAAGGAG	.	151	23	91	0	.	0	0	0	0	0	3
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	78583826	78583826	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NAV3-279	NM_014903	exon33	c.C6052A	p.Q2018K	ATTACCCAAAGGT	.	99	8	66	0	.	0	0	0	0	0	3
ZMYM2	7750	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	20641036	20641036	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZMYM2-685	NM_001190964	exon21	c.A3178G	p.S1060G	GATGATAGTTCTG	.	59	17	79	1	.	0	0	0	0	0	3
MIPEP	4285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	24304549	24304549	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MIPEP-90	NM_005932	exon19	c.G2080C	p.V694L	CACTTACGAAGTC	.	86	14	76	0	.	0	0	0	0	0	4
FOXG1	2290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	29237445	29237445	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FOXG1-660	NM_005249	exon1	c.C960T	p.R320R	CCCCCGCGCCAGC	.	109	7	34	0	.	0	0	0	0	0	3
UBE3A	7337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	25616489	25616489	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBE3A-660	NM_000462	exon7	c.C841T	p.P281S	AATTAGGATCTCG	.	77	7	90	0	.	0	0	0	0	0	4
CALML4	91860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	68491886	68491886	+	Silent	SNP	G	G	A	rs200702934	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CALML4-90	NM_033429	exon3	c.C297T	p.H99H	TATCCCGTGGGTC	.	54	5	46	0	G|0.998;A|0.002	0	0	0	0	0	4
VPS35	55737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	46714715	46714715	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VPS35-90	NM_018206	exon5	c.C374G	p.S125C	TTCCTGGACTGAG	.	226	24	215	0	.	0	0	0	0	0	4
WWP2	11060	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	69874080	69874080	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WWP2-658	NM_001270454	exon5	c.T392G	p.V131G	GCAGCGTTGTCTC	.	114	25	112	1	.	0	0	0	0	0	4
C17orf53	78995	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	42225398	42225398	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C17orf53-90	NM_001171251	exon3	c.A227G	p.D76G	TGCCAGACTTGGA	.	56	6	62	0	.	0	0	0	0	0	3
ABCC3	8714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48741342	48741342	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCC3-93	NM_003786	exon10	c.C1208T	p.A403V	AACGTGCGTCCAC	.	263	86	254	0	.	0	0	0	0	0	5
HEATR6	63897	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	58151224	58151224	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HEATR6-227	NM_022070	exon3	c.G351A	p.L117L	GAAATCCAAGTGC	.	177	75	197	1	.	0	0	0	0	0	3
FZR1	51343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3525978	3525978	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FZR1-227	NM_001136197	exon2	c.T182G	p.F61C	TGAACTTCCACAG	.	121	22	65	0	.	0	0	0	0	0	5
DDX39A	10212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	14520224	14520224	+	Missense_Mutation	SNP	C	C	T	rs188717433	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DDX39A-226	NM_005804	exon9	c.G1010A	p.R337Q	ATCCGCCGCTGGA	.	114	29	71	0	C|0.999;T|0.000	0	0	0	0	0	4
C19orf12	83636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	30199201	30199201	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C19orf12-204	NM_001031726	exon2	c.C153T	p.F51F	CCCGACGAAGGCC	.	85	15	43	0	.	0	0	0	0	0	4
SIGLEC5	8778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52132321	52132321	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SIGLEC5-92	NM_003830	exon4	c.C709T	p.Q237X	TGGTCTGTGGAGC	.	197	26	114	0	.	0	0	0	0	0	4
XDH	7498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	31628802	31628802	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	XDH-158	NM_000379	exon2	c.C71T	p.T24I	AGGGTTGTCTCTG	.	96	14	91	0	.	0	0	0	0	0	4
CCDC88A	55704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	55566683	55566683	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC88A-94	NM_018084	exon13	c.C1435G	p.L479V	TCCGAAGCTCTTC	.	53	13	38	0	.	0	0	0	0	0	5
ARHGAP15	55843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	144381828	144381828	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGAP15-653	NM_018460	exon12	c.A1130G	p.E377G	TTGTGGAAGCGAT	.	118	13	73	0	.	0	0	0	0	0	4
ADAM33	80332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3652895	3652895	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAM33-291	NM_025220	exon14	c.T1483C	p.C495R	GGGGACAGTGGGA	.	166	39	142	0	.	0	0	0	0	0	5
ADAM33	80332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3652900	3652900	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAM33-291	NM_025220	exon14	c.C1478G	p.S493C	CAGTGGGAGGAGG	.	168	37	145	0	.	0	0	0	0	0	5
RBM39	9584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34300947	34300947	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBM39-91	NM_184234	exon12	c.G1168T	p.V390L	CTGCCACAGCACC	.	25	9	29	0	.	0	0	0	0	0	5
SOGA1	140710	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	35422018	35422020	+	In_Frame_Del	DEL	GTT	GTT	-	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	GTT	GTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_080627	exon14	c.4465_4467del	p.1489_1489del	TCCATCGTTGATG	.	68	13	80	0	.	0	0	0	0	0	3
HIC2	23119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21800327	21800327	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIC2-703	NM_015094	exon3	c.G1143A	p.G381G	TAGTGGGGCTGGC	.	19	5	21	0	.	0	0	0	0	0	4
CABIN1	23523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24487724	24487724	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CABIN1-94	NM_001199281	exon24	c.A3713G	p.H1238R	ACCTGCACGAGGA	.	195	38	211	0	.	0	0	0	0	0	5
SEZ6L	23544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26707835	26707835	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEZ6L-95	NM_021115	exon8	c.G1783A	p.D595N	ACCTGCGACCCCG	.	118	33	172	0	.	0	0	0	0	0	5
CPNE9	151835	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	9754512	9754512	+	Splice_Site	SNP	C	C	T	rs190521882	by1000genomes	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CPNE9-70	.	.	.	.	ATGGCACGTGAGT	.	79	14	108	0	C|0.999;T|0.000	0	0	0	0	0	3
PRRT3	285368	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	9991595	9991596	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRRT3-90	NM_207351	exon2	c.204_205del	p.68_69del	TGTGACTGTCAGC	.	82	14	92	0	.	0	0	0	0	0	3
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52554031	52554031	+	Silent	SNP	C	C	T	rs145377358	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STAB1-139	NM_015136	exon51	c.C5307T	p.A1769A	AGACGCCGCCTTT	.	149	26	162	0	C|1.000;T|0.000	0	0	0	0	0	4
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	30726021	30726021	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH7-229	NM_032457	exon1	c.G2977A	p.A993T	GACCTGGCAAGGC	.	105	9	84	0	.	0	0	0	0	0	3
DTHD1	401124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	36345151	36345151	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DTHD1-46	NM_001170700	exon9	c.G2051A	p.W684X	TCCATTGGCTGGC	.	75	18	60	0	.	0	0	0	0	0	5
POLR2B	5431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	57889711	57889711	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POLR2B-92	NM_000938	exon19	c.C2731A	p.L911I	GTAACTCTCAATC	.	78	13	74	0	.	0	0	0	0	0	4
ADH6	130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100131302	100131302	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADH6-228	NM_000672	exon5	c.G504A	p.E168E	TACTTTCTCTAGA	.	88	17	63	0	.	0	0	0	0	0	5
SLC39A8	64116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	103180638	103180638	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC39A8-90	NM_001135147	exon10	c.C1300G	p.Q434E	GAAGTTGAGATTT	.	73	19	75	0	.	0	0	0	0	0	5
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	13792259	13792259	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH5-182	NM_001369	exon50	c.A8292G	p.T2764T	CAATTTTGTCACA	.	82	5	57	0	.	0	0	0	0	0	3
RAI14	26064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	34823555	34823555	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAI14-91	NM_001145525	exon17	c.G1617A	p.K539K	GCTAAAGCAGGAT	.	117	18	90	0	.	0	0	0	0	0	4
ADAMTS19	171019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	128977578	128977578	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS19-295	NM_133638	exon11	c.C1779G	p.C593W	ATGGTGCAAGGTA	.	161	37	104	0	.	0	0	0	0	0	5
HIST1H1A	3024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26017333	26017333	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIST1H1A-92	NM_005325	exon1	c.G628A	p.A210T	GTGCCGCTTTCTT	.	135	20	102	0	.	0	0	0	0	0	5
NKAPL	222698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28227192	28227192	+	Missense_Mutation	SNP	G	G	A	rs144318583	unknown;alternate_allele	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NKAPL-70	NM_001007531	exon1	c.G43A	p.G15S	ATCGTGGGCTCTC	.	194	46	133	0	G|1.000;T|0.000	0	0	0	0	0	5
TIAM2	26230	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	155503406	155503406	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TIAM2-93	NM_012454	exon12	c.G2754T	p.R918R	CAGCCGGATATTT	.	203	48	135	1	.	0	0	0	0	0	3
GPNMB	10457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	23313809	23313809	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPNMB-580	NM_001005340	exon11	c.T1685C	p.L562P	ATCCGCTACTCAA	.	44	11	51	0	.	0	0	0	0	0	5
SLC20A2	6575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	42317494	42317494	+	Missense_Mutation	SNP	T	T	C	rs142888552	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC20A2-92	NM_001257181	exon5	c.A533G	p.N178S	AGGCCATTGGGAA	.	106	27	117	0	T|0.999;C|0.001	0	0	0	0	0	4
HDHD3	81932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116135916	116135916	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HDHD3-90	NM_031219	exon2	c.C719T	p.A240V	TCAAGGGCAGGCA	.	58	16	53	0	.	0	0	0	0	0	5
SAT1	6303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	23803894	23803894	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SAT1-554	NM_002970	exon6	c.C437T	p.S146F	GTGCTTCTGATCT	.	301	63	332	0	.	0	0	0	0	0	5
ZDHHC15	158866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	74649034	74649034	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZDHHC15-132	NM_001146256	exon7	c.456-1G>C	.	TTAACCCTAAAAA	.	201	31	187	0	.	0	0	0	0	0	5
CENPI	2491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100400095	100400095	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CENPI-130	NM_006733	exon16	c.G1608A	p.L536L	TAAACTGATCCAC	.	98	25	141	0	.	0	0	0	0	0	5
TAF7L	54457	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	100542523	100542523	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAF7L-130	NM_024885	exon2	c.A267C	p.E89D	CTGGCTTTCACTC	.	422	77	439	2	.	0	0	0	0	0	3
NRK	203447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	105142618	105142618	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NRK-630	NM_198465	exon8	c.A622G	p.R208G	AATGGAAGAAGGA	.	131	28	103	0	.	0	0	0	0	0	5
TUBAL3	79861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	5436106	5436107	+	Missense_Mutation	DNP	CC	CC	AA	novel	unknown	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TUBAL3-91	NM_024803	exon4	c.G714T	p.V239F	CTGAACCACCAAT	.	354	16	246	0	.	0	0	0	0	0	4
ATP1A2	477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160105320	160105320	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP1A2-518	NM_000702	exon16	c.G2212A	p.V738I	TCTGACGTCTCTA	.	418	60	315	0	.	0	0	0	0	0	5
ZNF705A	440077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8329841	8329841	+	Missense_Mutation	SNP	C	C	T	rs145286690	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF705A-90	NM_001004328	exon5	c.C565T	p.R189W	CTTAGACGGCACA	.	221	81	157	0	C|1.000;T|0.000	0	0	0	0	0	5
KLRC2	3822	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	10584764	10584764	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLRC2-514	NM_002260	exon5	c.G525A	p.V175V	ACGAAACACACCA	.	138	15	169	0	.	0	0	0	0	0	3
USP31	57478	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	23079691	23079691	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP31-663	NM_020718	exon16	c.C3735A	p.G1245G	TGTCTTGCCAAGA	.	75	6	53	0	.	0	0	0	0	0	3
OMG	4974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29622398	29622398	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OMG-493	NM_002544	exon2	c.C952G	p.L318V	TGCTTAGAGTGGC	.	235	32	159	0	.	0	0	0	0	0	5
ECEL1	9427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	233347170	233347170	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ECEL1-90	NM_004826	exon12	c.C1754T	p.A585V	ATGCCCGCGGGGA	.	164	20	129	0	.	0	0	0	0	0	4
MTHFD1L	25902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	151293139	151293139	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MTHFD1L-292	NM_001242767	exon20	c.T2073C	p.S691S	CAACTCTTCAGTG	.	115	14	102	0	.	0	0	0	0	0	4
SLC26A3	1811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107408290	107408290	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC26A3-94	NM_000111	exon19	c.T2126G	p.F709C	AAGAAAAATATTG	.	92	20	118	0	.	0	0	0	0	0	5
CCDC120	90060	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	48921925	48921925	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC120-131	NM_001163321	exon6	c.C454T	p.R152C	CTGGAACGCGAGG	.	93	20	55	1	.	0	0	0	0	0	3
MECP2	4204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153295874	153295874	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MECP2-226	NM_001110792	exon3	c.C1441T	p.P481S	TGTTTGGCCTTGG	.	188	44	152	0	.	0	0	0	0	0	5
DMAP1	55929	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	44684101	44684101	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DMAP1-226	NM_001034024	exon5	c.T512G	p.F171C	TGCGTTTTGTTGT	.	243	220	238	2	.	0	0	0	0	0	3
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	181727162	181727162	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNA1E-95	NM_000721	exon31	c.G4409A	p.R1470H	AGTACCGCGTGTG	.	163	135	132	1	.	0	0	0	0	0	4
NLRP3	114548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247587530	247587530	+	Missense_Mutation	SNP	G	G	A	rs180177443	unknown;alternate_allele	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRP3-674	NM_183395	exon3	c.G785A	p.R262Q	ACTGTCGAGAGGT	.	90	16	106	0	.	0	0	0	0	0	4
OR5M11	219487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56310261	56310261	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001005245	exon1	c.A473G	p.Q158R	ATGGCCTGGAAGA	.	120	38	169	0	.	0	0	0	0	0	5
RERG	85004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	15262053	15262053	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RERG-659	NM_032918	exon5	c.C591T	p.I197I	ACTACTGATTTTG	.	342	57	163	0	.	0	0	0	0	0	5
NFE2	4778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	54686624	54686624	+	Missense_Mutation	SNP	C	C	T	rs139796996	unknown	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NFE2-226	NM_001261461	exon4	c.G656A	p.R219Q	TCCCCCCGTGCAG	.	164	45	161	0	C|1.000;T|0.000	0	0	0	0	0	4
TMEM132C	92293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	128900026	128900026	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM132C-68	NM_001136103	exon2	c.G835A	p.D279N	GCCCAGGACAGCG	.	652	144	242	0	.	0	0	0	0	0	5
CDRT15L2	256223	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	20483953	20483953	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001190790	exon2	c.C757T	p.R253C	CTCAGACGCAATC	.	135	111	226	0	.	0	0	0	0	0	3
ST8SIA5	29906	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	44260305	44260305	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ST8SIA5-517	NM_013305	exon7	c.C831T	p.F277F	CGGATGGAAGTAG	.	203	81	124	2	.	0	0	0	0	0	4
AP1M1	8907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16338981	16338981	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AP1M1-156	NM_001130524	exon9	c.G886A	p.E296K	GTGATCGAGAAGC	.	137	27	86	0	.	0	0	0	0	0	5
CLK1	1195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201726549	201726549	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLK1-784	NM_001162407	exon2	c.G163A	p.D55N	TGTCATCCCAATC	.	177	63	112	0	.	0	0	0	0	0	5
TGFBR2	7048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	30713517	30713517	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TGFBR2-1698	NM_001024847	exon5	c.A917G	p.Y306C	TTCCCTATGAGGA	.	356	208	202	1	.	0	0	0	0	0	5
NUDT9	53343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	88379078	88379078	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NUDT9-90	NM_024047	exon8	c.C958G	p.L320V	CTGAAGCTTTATG	.	193	41	165	0	.	0	0	0	0	0	5
IRF2	3660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	185339341	185339341	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IRF2-91	NM_002199	exon5	c.G391A	p.D131N	CTTTGTCTTCTTT	.	120	32	135	0	.	0	0	0	0	0	5
LRRC14B	389257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	194841	194841	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC14B-69	NM_001080478	exon2	c.G918A	p.L306L	CCCGCTGCGAGTA	.	411	120	180	0	.	0	0	0	0	0	5
SLC17A5	26503	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	74345205	74345205	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC17A5-190	NM_012434	exon6	c.G719A	p.W240X	AGAAACCAAAATA	.	9	9	12	0	.	0	0	0	0	0	4
HEBP2	23593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	138726347	138726347	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HEBP2-90	NM_014320	exon2	c.G168A	p.M56I	GTCTATGGACTGG	.	81	29	105	0	.	0	0	0	0	0	5
KCNQ3	3786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133144473	133144473	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNQ3-138	NM_004519	exon14	c.T1838A	p.I613N	TCTTCGATTTCTG	.	135	56	79	0	.	0	0	0	0	0	5
AQP7	364	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	33386976	33386976	+	Missense_Mutation	SNP	G	G	A	rs143391243	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AQP7-90	NM_001170	exon4	c.C259T	p.R87C	AGATGCGGCCTGC	.	242	33	237	0	G|0.999;A|0.001	0	0	0	0	0	3
CEP104	9731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3732858	3732858	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CEP104-92	NM_014704	exon21	c.C2648T	p.P883L	AGTGCCGGGGCCT	.	62	15	49	0	.	7	7	0	0	0	5
GRM5	2915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	88386562	88386562	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRM5-949	NM_000842	exon4	c.G921C	p.W307C	GTCAGCCCAGCCA	.	29	12	35	0	.	0	0	0	0	0	5
CEP128	145508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	81209499	81209499	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CEP128-91	NM_152446	exon18	c.A2726G	p.K909R	GATTCCTTGTTTT	.	58	17	68	0	.	0	0	0	0	0	5
ATP6V0A1	535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40666399	40666399	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP6V0A1-91	NM_001130020	exon20	c.G2344A	p.A782T	TTCACTGCCTTTG	.	176	48	214	0	.	21	13	8	0	0	5
IGF2BP1	10642	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	47117325	47117325	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGF2BP1-226	NM_006546	exon7	c.C690A	p.D230E	GATAGACGTGCAT	.	81	6	132	0	.	0	0	0	0	0	3
RFX1	5989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14088836	14088836	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RFX1-92	NM_002918	exon8	c.G897C	p.E299D	GCCGCCCTCCACA	.	84	32	115	0	.	1	1	0	0	0	5
GTF3C2	2976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27560194	27560194	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GTF3C2-92	NM_001521	exon8	c.T1044G	p.S348S	GGGCAGGTAGGGA	.	172	54	176	0	.	2	2	0	0	0	5
CLDN5	7122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19511427	19511427	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLDN5-492	NM_001130861	exon1	c.G607C	p.A203P	TGAGGGCCACACG	.	27	10	36	0	.	40	40	0	0	0	5
SLC6A1	6529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	11072862	11072862	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC6A1-92	NM_003042	exon13	c.1324-1G>T	.	CTTGCAGGGGGGT	.	65	28	72	0	.	0	0	0	0	0	4
PRICKLE2	166336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	64133073	64133073	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRICKLE2-95	NM_198859	exon7	c.C1093T	p.L365L	CTGACAGCCGGTT	.	107	30	108	0	.	0	0	0	0	0	5
ALPK1	80216	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	113352982	113352982	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALPK1-337	NM_001102406	exon11	c.2279delG	p.R760fs	AAGACAGGCAGGG	.	51	16	31	0	.	0	0	0	0	0	3
TCERG1	10915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	145838656	145838656	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TCERG1-92	NM_006706	exon4	c.G648A	p.Q216Q	GGCCCAGGCCCAG	.	73	19	19	0	.	0	0	0	0	0	4
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	169482342	169482342	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DOCK2-97	NM_004946	exon42	c.A4247T	p.D1416V	TCTTGGATGAACA	.	125	9	131	0	.	1	1	0	0	0	3
DST	667	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	56482929	56482929	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DST-523	NM_001723	exon23	c.T5903A	p.I1968K	AAAGTTATCTGTA	.	134	10	88	0	.	0	0	0	0	0	3
IMPG1	3617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	76633419	76633419	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IMPG1-93	NM_001563	exon16	c.C2248G	p.P750A	GATCTGGCAACCT	.	26	10	32	0	.	0	0	0	0	0	5
ANKIB1	54467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	91974336	91974336	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKIB1-432	NM_019004	exon7	c.G1041A	p.V347V	CCCTGTGGATATG	.	179	56	175	0	.	0	0	0	0	0	5
TTC26	79989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138872237	138872237	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTC26-91	NM_024926	exon17	c.G1505C	p.G502A	AACGGGGTGCCTG	.	154	48	125	0	.	1	0	1	0	0	5
MSR1	4481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	15967636	15967636	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MSR1-91	NM_138715	exon10	c.C1314G	p.A438A	TGAACAGGCTCTT	.	81	25	61	0	.	1	1	0	0	0	5
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	76939322	76939322	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATRX-248	NM_000489	exon9	c.C1426T	p.Q476X	CATTCTGATGCAT	.	62	18	56	0	.	0	0	0	0	0	5
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	39898819	39898820	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MACF1-165	NM_012090	exon64	c.11371_11372insT	p.V3791fs	AAAACTGTATTAC	.	269	83	203	0	.	0	0	0	0	0	3
CYTB	0	bcgsc.ca	37	MT	14949	14949	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361789	exon1	c.A203G	p.H68R	TCGCCCACATCAC	.	130	121	22	1	.	1756	194	1557	3	2	1
LGALS12	85329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63276354	63276354	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LGALS12-92	NM_001142535	exon3	c.A332G	p.N111S	TCTGCAACACCCT	.	133	36	112	0	.	0	0	0	0	0	5
CCDC67	159989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	93088643	93088643	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC67-91	NM_181645	exon3	c.C136T	p.R46X	GAGACACGATTAG	.	119	84	150	0	.	0	0	0	0	0	5
AICDA	57379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8759524	8759524	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AICDA-229	NM_020661	exon2	c.C93T	p.Y31Y	CACTACGTAGCAC	.	217	110	133	0	.	0	0	0	0	0	5
GALK2	2585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49611899	49611899	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GALK2-160	NM_002044	exon9	c.A1066G	p.M356V	GAAAACATGGTCC	.	162	79	134	0	.	14	6	8	0	0	5
FAM63B	54629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	59102553	59102553	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM63B-90	NM_001040450	exon4	c.T1088C	p.I363T	TTGATATTCCTTT	.	146	35	132	0	.	1	1	0	0	0	5
PRSS22	64063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2903974	2903974	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRSS22-90	NM_022119	exon5	c.C609T	p.I203I	CGAGTCGATGATA	.	117	21	81	0	.	0	0	0	0	0	5
ZNF174	7727	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3454512	3454512	+	Silent	SNP	G	G	A	rs140705448	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF174-90	NM_001032292	exon2	c.G489A	p.P163P	TCAACCGCAGACT	.	96	15	91	1	G|1.000;A|0.000	13	9	4	0	0	3
ITGAL	3683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30492905	30492905	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITGAL-994	NM_002209	exon7	c.C722T	p.A241V	ATGTCGCGTGAGT	.	199	33	140	0	.	0	0	0	0	0	5
NEDD4L	23327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	56035075	56035075	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NEDD4L-658	NM_001144967	exon22	c.G2161A	p.V721I	CTGGCCGTATTTC	.	172	21	199	0	.	0	0	0	0	0	4
MATK	4145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3778527	3778527	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MATK-521	NM_002378	exon13	c.C1267T	p.R423W	GAGCCCGTCCATA	.	211	45	85	0	.	0	0	0	0	0	5
RAB8A	4218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16222725	16222725	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAB8A-227	NM_005370	exon1	c.A14G	p.Y5C	AGACCTACGATTA	.	105	40	84	0	.	3	1	2	0	0	5
EFHD1	80303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	233527635	233527635	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EFHD1-90	NM_025202	exon2	c.C426T	p.F142F	GGACTTCGATGGC	.	86	66	106	0	.	1	0	1	0	0	5
DGKD	8527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234354288	234354288	+	Missense_Mutation	SNP	C	C	T	rs139149715	unknown	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DGKD-676	NM_152879	exon11	c.C1214T	p.P405L	TGCTGCCGCTCGG	.	136	85	126	0	C|1.000;T|0.000	0	0	0	0	0	5
KRTAP10-7	386675	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	46021002	46021002	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_198689	exon2	c.T466C	p.C156R	GCCTGCTGTGTGC	.	1047	70	524	0	.	0	0	0	0	0	3
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	4715944	4715944	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITPR1-710	NM_001099952	exon22	c.G2515C	p.E839Q	ACCATGGAGTTTG	.	69	29	78	0	.	0	0	0	0	0	5
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266124	41266124	+	Missense_Mutation	SNP	A	A	G	rs121913412	bycluster	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTNNB1-24361	NM_001098209	exon3	c.A121G	p.T41A	GCCACTACCACAG	.	167	63	170	0	.	51	28	23	0	0	5
CAMKV	79012	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49898695	49898695	+	Silent	SNP	C	C	T	rs200717131	unknown	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CAMKV-613	NM_024046	exon6	c.G480A	p.S160S	AATCTTCGAGTTC	.	101	28	96	2	C|1.000;T|0.000	0	0	0	0	0	3
PHLDB2	90102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	111632246	111632246	+	Silent	SNP	C	C	T	rs112434778	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHLDB2-96	NM_001134437	exon4	c.C1497T	p.T499T	GACCACCGTGGAA	.	73	23	73	0	C|0.998;T|0.002	1	1	0	0	0	4
HTRA3	94031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	8293291	8293291	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HTRA3-91	NM_053044	exon4	c.C903T	p.N301N	CATCAACGTGAGT	.	128	51	116	0	.	0	0	0	0	0	5
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	38435283	38435283	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EGFLAM-187	NM_001205301	exon16	c.C2211T	p.G737G	CATTGGCGGAGTC	.	97	7	68	0	.	0	0	0	0	0	3
SPAM1	6677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	123599735	123599735	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPAM1-94	NM_153189	exon5	c.G1242A	p.K414K	TGGAAAGTTCACA	.	77	12	67	0	.	0	0	0	0	0	4
CCDC22	28952	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	49093667	49093667	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC22-130	NM_014008	exon2	c.T165A	p.P55P	CAGCCCTCTGCTG	.	82	25	66	1	.	13	13	0	0	0	3
OCRL	4952	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	128721082	128721082	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OCRL-206	NM_000276	exon20	c.A2243G	p.Y748C	TCAAATACGCCTG	.	299	59	275	1	.	0	0	0	0	0	3
CNGA2	1260	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	150912699	150912699	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNGA2-193	NM_005140	exon7	c.G1724A	p.R575Q	GGGGTCGGGAGAT	.	166	43	126	1	.	0	0	0	0	0	3
BHLHB9	80823	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	102003966	102003967	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BHLHB9-132	NM_001142524	exon4	c.43_44insA	p.E15fs	AAAACTGAAAAAA	.	340	75	354	0	.	0	0	0	0	0	3
DENND4B	9909	hgsc.bcm.edu	37	1	153907297	153907297	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DENND4B-69	NM_014856	exon18	c.G2712A	p.Q904Q	CTGCTGCTGCTGC	.	82	7	66	0	.	47	39	8	0	0	1
COX1	5742	broad.mit.edu	37	MT	6003	6003	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361624	exon1	c.A100G	p.S34G	GCTCTAAGCCTCC	.	42	16	16	0	.	28822	8757	20045	10	10	1
PRPF38A	84950	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	52878204	52878204	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRPF38A-90	NM_032864	exon5	c.G517A	p.E173K	TTAGAGGAAGCTG	.	98	7	115	0	.	50	47	3	0	0	3
CENPF	1063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	214816610	214816610	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CENPF-567	NM_016343	exon12	c.C4929G	p.L1643L	ACGACTCCAGCTA	.	140	71	145	0	.	1	0	1	0	0	5
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	237811822	237811822	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RYR2-158	NM_001035	exon49	c.7421delG	p.R2474fs	TTGACAGGGTCTA	.	213	94	217	0	.	0	0	0	0	0	3
ABI1	10006	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	27040664	27040664	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABI1-1082	NM_005470	exon11	c.C1214T	p.P405L	AACATGGGAATGT	.	105	46	110	1	.	12	11	1	0	0	3
C2CD5	9847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	22635541	22635541	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_014802	exon14	c.G1687A	p.G563R	TTAGTCCAAACAA	.	146	52	132	0	.	2	1	1	0	0	5
WDR72	256764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	53998158	53998158	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDR72-92	NM_182758	exon10	c.T1068A	p.D356E	AGGAACATCAGGG	.	71	31	66	0	.	0	0	0	0	0	5
PARP6	56965	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	72543246	72543246	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PARP6-522	NM_020214	exon17	c.C1358T	p.P453L	TTGGCAGGAGGGC	.	172	78	175	0	.	20	9	11	0	0	4
UBL7	84993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74740854	74740854	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBL7-91	NM_201265	exon10	c.C970T	p.H324Y	GGGCATGCTGTAG	.	225	101	225	0	.	89	44	45	0	0	5
PCSK4	54760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1488279	1488279	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCSK4-90	NM_017573	exon3	c.G295T	p.V99L	ACTGCACCTGCAG	.	139	49	110	0	.	0	0	0	0	0	5
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57484420	57484420	+	Missense_Mutation	SNP	C	C	T	rs11554273	bycluster	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GNAS-4767	NM_080425	exon8	c.C2530T	p.R844C	CGCTGCCGTGTCC	.	133	64	143	0	C|1.000	2456	1242	1213	0	1	5
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	391155	391155	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHL1-583	NM_001253388	exon8	c.A962T	p.K321I	AGGACAAAGGAAA	.	134	59	83	0	.	0	0	0	0	0	5
C5orf42	65250	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	37196023	37196023	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C5orf42-94	NM_023073	exon21	c.G3748A	p.A1250T	AAAATGCGATACC	.	320	19	342	0	.	1	1	0	0	0	3
RAD17	5884	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	68670480	68670480	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAD17-205	NM_133339	exon3	c.A326T	p.K109I	AAAAGAAAATTGA	.	304	100	266	0	.	3	2	1	0	0	4
ENPP3	5169	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	132014711	132014711	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ENPP3-95	NM_005021	exon15	c.C1359T	p.N453N	CAAGAACGTCAGA	.	273	108	309	2	.	19	10	9	0	0	3
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113196694	113196694	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SVEP1-75	NM_153366	exon30	c.G4981C	p.G1661R	GGAAGCCTGGATC	.	161	59	216	0	.	0	0	0	0	0	5
CACNA1F	778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49067892	49067892	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNA1F-176	NM_005183	exon36	c.G4183A	p.G1395R	GATTTCCGGGAAG	.	1381	184	504	0	.	0	0	0	0	0	5
NUTF2	10204	broad.mit.edu	37	16	67899046	67899046	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NUTF2-68	NM_005796	exon2	c.C13A	p.P5T	GACAAGCCAATTT	.	122	10	89	2	.	142	140	2	0	0	1
C1orf127	148345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11008485	11008485	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C1orf127-91	NM_001170754	exon12	c.G1707T	p.G569G	CACATCCCCGCTT	.	97	80	119	0	.	2	2	0	0	0	5
MEN1	4221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64573817	64573817	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MEN1-3017	NM_130800	exon7	c.C951G	p.Y317X	CCGATAGTAGGTC	.	272	230	340	1	.	4	0	4	0	0	4
SETDB2	83852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	50050649	50050649	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SETDB2-91	NM_031915	exon7	c.A379G	p.K127E	GAAGATAAAGTTG	.	120	42	84	1	.	8	7	1	0	0	4
FOXG1	2290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	29237769	29237769	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FOXG1-660	NM_005249	exon1	c.G1284A	p.S428S	GACTTCGCAGAGC	.	116	15	94	0	.	0	0	0	0	0	4
JAG2	3714	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	105622156	105622156	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	JAG2-846	NM_145159	exon4	c.G646T	p.D216Y	AAAAGTCGTTGCG	.	432	123	123	1	.	3	3	0	0	0	3
LCTL	197021	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	66850065	66850065	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LCTL-92	NM_207338	exon8	c.A917G	p.Y306C	CCAATGTAGTCCT	.	120	7	105	0	.	0	0	0	0	0	3
SCRN2	90507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	45916995	45916995	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCRN2-91	NM_138355	exon4	c.G371A	p.R124Q	CTGCTCCGTTCCA	.	123	111	142	1	.	4	0	4	0	0	4
DSG2	1829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	29102113	29102113	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DSG2-563	NM_001943	exon6	c.C591G	p.S197S	AATTTCCTATAGA	.	83	69	148	0	.	0	0	0	0	0	5
ELSPBP1	64100	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	48525476	48525476	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ELSPBP1-90	NM_022142	exon6	c.T564C	p.Y188Y	CAACTATAAAAAC	.	305	22	166	0	.	6	6	0	0	0	3
ZNF808	388558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53058713	53058713	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001039886	exon5	c.A2544G	p.K848K	TTACAAATGTGAA	.	108	39	52	0	.	4	4	0	0	0	5
ITGB6	3694	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	160994644	160994644	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITGB6-227	NM_000888	exon9	c.G1174A	p.A392T	AGATGGCTGTAAA	.	175	15	221	0	.	0	0	0	0	0	3
DOCK10	55619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	225702542	225702542	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DOCK10-92	NM_014689	exon25	c.G2787C	p.L929L	GTCGGTCAGAACC	.	37	24	37	0	.	0	0	0	0	0	5
CNBD2	140894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	34618419	34618419	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_080834	exon12	c.C1568T	p.P523L	ACAACCCTAAGTC	.	200	21	255	0	.	1	1	0	0	0	4
RFPL1	5988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	29837551	29837551	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RFPL1-90	NM_021026	exon2	c.G394C	p.D132H	GATGCCGACACAG	.	188	133	173	1	.	2	1	1	0	0	4
ITIH1	3697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52819196	52819196	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITIH1-93	NM_002215	exon12	c.T1544C	p.I515T	GGCGCATTGCTGA	.	131	117	157	1	.	0	0	0	0	0	5
FXR1	8087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	180685937	180685937	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FXR1-153	NM_001013438	exon14	c.C1297T	p.R433X	GACAGCCGACATC	.	199	173	203	0	.	12	1	11	0	0	5
HEXB	3074	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	5	73981246	73981246	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HEXB-91	NM_000521	exon1	c.C161T	p.P54L	CGGGGCCGGCGCT	.	42	19	11	0	.	32	24	8	0	0	3
BLOC1S5	63915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	8041503	8041503	+	Splice_Site	SNP	T	T	A	novel	unknown	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001199322	exon5	c.4-2A>T	.	TTTTCCTATTAAA	.	32	21	22	0	.	0	0	0	0	0	4
POM121L12	285877	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	53103984	53103984	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_182595	exon1	c.G620A	p.R207K	GTGGCAGGCGGAA	.	127	56	65	0	.	0	0	0	0	0	4
FLNC	2318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128496863	128496863	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FLNC-141	NM_001458	exon45	c.C7449G	p.N2483K	GTTCAACGGTGCC	.	303	123	217	0	.	1	1	0	0	0	5
KEL	3792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142651025	142651025	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KEL-93	NM_000420	exon9	c.G943T	p.D315Y	ACCAGTCGATGGC	.	114	50	74	0	.	0	0	0	0	0	5
ZBTB10	65986	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	81399960	81399962	+	In_Frame_Del	DEL	CCT	CCT	-	novel	unknown	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	CCT	CCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZBTB10-522	NM_023929	exon1	c.915_917del	p.305_306del	GAAAACCCTCCTC	.	68	33	39	0	.	0	0	0	0	0	3
ZNF157	7712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47230123	47230123	+	Missense_Mutation	SNP	C	C	A	rs186352953	unknown;alternate_allele	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF157-130	NM_003446	exon1	c.C56A	p.P19H	GAGAACCTGGCAG	.	375	180	251	0	C|1.000;T|0.000	0	0	0	0	0	5
MAGEA12	4111	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	151900366	151900366	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAGEA12-131	NM_005367	exon2	c.C435T	p.D145D	AAAGAAGTCCTGG	.	539	39	680	0	.	0	0	0	0	0	3
ADAMTS7	11173	broad.mit.edu	37	15	79059160	79059160	+	Silent	SNP	T	T	G	novel	unknown	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS7-226	NM_014272	exon19	c.A3093C	p.S1031S	GGCGGGTGAAGGG	.	89	30	17	2	.	30	24	6	0	0	1
RBM6	10180	broad.mit.edu	37	3	50103899	50103899	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBM6-280	NM_005777	exon17	c.T2907C	p.V969V	AGAAGTTCTGATC	.	56	4	61	0	.	37	33	4	0	0	1
MLXIPL	51085	hgsc.bcm.edu;broad.mit.edu	37	7	73011760	73011760	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLXIPL-91	NM_032954	exon9	c.C1355A	p.P452H	GCTGCAGGAGCAG	.	27	6	12	0	.	14	6	8	0	0	2
CYTB	0	bcgsc.ca	37	MT	14950	14950	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361789	exon1	c.C204T	p.H68H	CGCCCACATCACT	.	31	5	35	0	.	16143	16124	8	6	5	1
CYTB	0	bcgsc.ca	37	MT	14956	14956	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361789	exon1	c.T210C	p.T70T	CATCACTCGAGAC	.	32	4	36	0	.	18266	18217	27	7	15	1
HDAC1	3065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32797321	32797321	+	Missense_Mutation	SNP	G	G	A	rs1140658	unknown;alternate_allele	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HDAC1-659	NM_004964	exon11	c.G1133A	p.G378E	CACCTGGGGTCCA	.	130	80	190	1	G|1.000;|0.000	77	31	46	0	0	5
KRTCAP2	200185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155141958	155141958	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRTCAP2-90	NM_173852	exon5	c.C447T	p.L149L	TGGTGTGAGGACT	.	260	170	271	0	.	333	107	226	0	0	5
TOR1AIP2	163590	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	179816744	179816745	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TOR1AIP2-69	NM_001199260	exon6	c.580_581del	p.194_194del	AATTTTTGTGTTT	.	94	15	95	0	.	0	0	0	0	0	3
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228561682	228561682	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OBSCN-403	NM_001271223	exon106	c.C25224T	p.F8408F	TTCCTTCCGGCTC	.	345	83	339	0	.	0	0	0	0	0	5
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	245851927	245851927	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF26B-25	NM_018012	exon12	c.C5642T	p.P1881L	TCCCGCCGGCCAT	.	51	44	32	0	.	0	0	0	0	0	4
RBM20	282996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	112559623	112559623	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001134363	exon7	c.G1747A	p.G583S	ATCAATGGTGAGA	.	159	49	186	0	.	0	0	0	0	0	5
NUP160	23279	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	47869867	47869867	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NUP160-209	NM_015231	exon1	c.G106A	p.A36T	CCGCCGCCATCTT	.	88	6	52	0	.	0	0	0	0	0	3
GPR137	56834	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	64056752	64056777	+	Frame_Shift_Del	DEL	CCCAGGATCCTGGGGGTCGTGGCTAC	CCCAGGATCCTGGGGGTCGTGGCTAC	-	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	CCCAGGATCCTGGGGGTCGTGGCTAC	CCCAGGATCCTGGGGGTCGTGGCTAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR137-68	NM_001170726	exon9	c.1343_1368del	p.448_456del	TTCTTGCCCAGGA	.	109	17	167	0	.	0	0	0	0	0	3
NOP2	4839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6672532	6672532	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOP2-92	NM_001258309	exon9	c.C936T	p.S312S	TCCATAGGAGTAG	.	77	40	84	0	.	5	2	3	0	0	5
KRT6A	3853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52882329	52882329	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRT6A-27	NM_005554	exon7	c.G1207A	p.A403T	GGTTGGCGCACTG	.	296	160	302	0	.	0	0	0	0	0	5
NID2	22795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	52520649	52520649	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NID2-158	NM_007361	exon5	c.C1077T	p.S359S	CAAGGTGGAAGAT	.	109	41	100	0	.	0	0	0	0	0	5
TTLL5	23093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	76232414	76232414	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTLL5-92	NM_015072	exon20	c.A1718C	p.Q573P	TTACCCAACCAGC	.	62	29	77	0	.	0	0	0	0	0	5
SEL1L	6400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	81961479	81961479	+	Silent	SNP	A	A	C	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEL1L-227	NM_005065	exon11	c.T1131G	p.V377V	AAGACCAACCTGA	.	110	21	168	0	.	0	0	0	0	0	5
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105407448	105407448	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AHNAK2-47	NM_138420	exon7	c.A14340G	p.E4780E	AGAAGATTCAAAG	.	252	84	143	0	.	0	0	0	0	0	5
ERI2	112479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	20810279	20810279	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ERI2-153	NM_001142725	exon9	c.G843A	p.K281K	AGGCTCCTTATTA	.	62	8	47	0	.	2	1	1	0	0	3
MYH4	4622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10358566	10358566	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYH4-102	NM_017533	exon20	c.G2221A	p.D741N	TGCTGTCAATGAA	.	62	6	102	0	.	0	0	0	0	0	4
LAMA1	284217	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	7011370	7011370	+	Missense_Mutation	SNP	C	C	T	rs202168119	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LAMA1-149	NM_005559	exon25	c.G3616A	p.A1206T	CGGTGGCGGCATC	.	194	38	160	1	C|0.999;T|0.000	0	0	0	0	0	3
PRDX2	7001	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	12907982	12907983	+	Splice_Site	DEL	TG	TG	-	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRDX2-90	.	.	.	.	ACAAACTGTGGGA	.	155	17	116	0	.	0	0	0	0	0	3
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	15300189	15300189	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOTCH3-855	NM_000435	exon7	c.G1087C	p.D363H	TAGCATCCTCGTG	.	543	43	143	0	.	0	0	0	0	0	3
MAG	4099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35800808	35800808	+	Silent	SNP	C	C	T	rs200957534	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAG-947	NM_080600	exon8	c.C1263T	p.C421C	CCACTGCGCGGCA	.	218	160	70	0	.	0	0	0	0	0	5
ACSL3	2181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	223789243	223789243	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACSL3-228	NM_203372	exon10	c.C1222G	p.L408V	CGTAATCTGTTTA	.	381	83	197	0	.	7	7	0	0	0	5
MFF	56947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228195447	228195447	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MFF-153	NM_020194	exon4	c.G144A	p.R48R	AATGAGGGTCCCA	.	420	69	319	0	.	75	59	16	0	0	5
DDRGK1	65992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	3181069	3181069	+	Silent	SNP	C	C	T	rs148502836	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DDRGK1-90	NM_023935	exon3	c.G327A	p.A109A	AGTTTCCGCTGGC	.	173	42	120	0	C|1.000;T|0.000	222	152	70	0	0	4
ZFP64	55734	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	50769031	50769031	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFP64-155	NM_018197	exon6	c.C1700T	p.P567L	ACAGCCGGCTGGG	.	100	35	56	1	.	15	8	7	0	0	3
ATP6AP1L	92270	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	81613911	81613911	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP6AP1L-90	NM_001017971	exon4	c.C467T	p.S156F	CAATGTCCCTGAT	.	217	95	204	1	.	0	0	0	0	0	3
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127728908	127728908	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBN2-146	NM_001999	exon10	c.C1385A	p.P462H	CCTCCAGGGATGG	.	84	44	105	0	.	0	0	0	0	0	5
TTC1	7265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	159491977	159491977	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTC1-91	NM_003314	exon8	c.T784G	p.F262V	CGACCTTTTGGGC	.	56	34	62	0	.	102	49	53	0	0	5
LAT2	7462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	73636002	73636002	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LAT2-90	NM_032464	exon10	c.G368A	p.R123Q	GGGGGCGGTTCTC	.	72	13	68	0	.	1	1	0	0	0	4
CACNA2D1	781	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	81591223	81591224	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNA2D1-96	NM_000722	exon36	c.2952_2953del	p.984_985del	AGTTTCCACAGTC	.	71	22	69	0	.	0	0	0	0	0	3
BRF2	55290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	37702542	37702542	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BRF2-90	NM_018310	exon4	c.G726A	p.R242R	TGAAAGCCGATCT	.	703	51	137	0	.	111	97	14	0	0	3
ENPP2	5168	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	120581567	120581567	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ENPP2-292	NM_006209	exon22	c.G2117A	p.R706Q	TCAGGCCGGACGC	.	141	10	135	0	.	151	151	0	0	0	3
UNC13B	10497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35375173	35375173	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UNC13B-157	NM_006377	exon13	c.G1343A	p.R448H	CTACACGCACTTC	.	187	82	222	0	.	2	1	1	0	0	5
TGFBR1	7046	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	101894969	101894969	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TGFBR1-954	NM_004612	exon3	c.T522A	p.G174G	AGAGGGTACTACG	.	122	46	146	1	.	0	0	0	0	0	4
ZXDB	158586	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	X	57619015	57619015	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZXDB-130	NM_007157	exon1	c.G534A	p.L178L	GCTGTTGCGCTTT	.	119	38	75	0	.	0	0	0	0	0	3
HEPH	9843	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	65423292	65423292	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HEPH-135	NM_138737	exon13	c.C2326T	p.Q776X	GGCCACCAAGCCA	.	237	12	219	0	.	0	0	0	0	0	3
FADD	8772	broad.mit.edu;bcgsc.ca	37	11	70052536	70052536	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FADD-660	NM_003824	exon2	c.C584T	p.P195L	TGTCCCCGATGTC	.	123	56	153	2	.	38	18	20	0	0	2
KIAA1522	57648	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	33235634	33235634	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1522-90	NM_020888	exon6	c.G854C	p.G285A	AGGCTGGCGCTGA	.	179	72	103	1	.	0	0	0	0	0	4
FCRL5	83416	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	157494069	157494069	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FCRL5-156	NM_031281	exon10	c.G2239T	p.V747F	ACTCACCTGCAAC	.	301	108	273	1	.	0	0	0	0	0	3
CD1A	909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158224992	158224992	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CD1A-93	NM_001763	exon2	c.C177A	p.S59R	GGACAGCAATTCC	.	187	128	224	1	.	0	0	0	0	0	5
KCNT2	343450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	196227367	196227367	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNT2-159	NM_198503	exon26	c.G3168A	p.V1056V	ATTTTTCACAAGT	.	47	17	46	0	.	0	0	0	0	0	5
PLAC9	219348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	81904035	81904035	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLAC9-90	NM_001012973	exon3	c.G219C	p.L73L	GGGCCTGCTGGAG	.	75	29	47	0	.	61	61	0	0	0	5
MEN1	4221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64572613	64572613	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MEN1-3017	NM_130800	exon9	c.C1258T	p.R420X	AGAATCGCAGCAG	.	92	68	140	1	.	0	0	0	0	0	4
ZC3H13	23091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	46542982	46542982	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZC3H13-92	NM_015070	exon14	c.A3697T	p.R1233X	TATCTCTTGAGCC	.	126	40	92	0	.	7	4	3	0	0	5
SSTR1	6751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	38679311	38679311	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SSTR1-947	NM_001049	exon3	c.C717A	p.I239I	GGCTATCTGCCTG	.	133	40	140	0	.	0	0	0	0	0	5
EXD1	161829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41501767	41501767	+	Missense_Mutation	SNP	G	G	T	rs113822955	unknown;alternate_allele	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EXD1-91	NM_152596	exon5	c.C292A	p.Q98K	CATTCTGCTTCTT	.	132	88	136	0	G|0.500;A|0.500	0	0	0	0	0	5
NTRK3	4916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	88678334	88678334	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NTRK3-3538	NM_001243101	exon10	c.C1202A	p.P401Q	TCACCTGGAAAGG	.	212	83	257	0	.	0	0	0	0	0	5
FTO	79068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	53860242	53860242	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FTO-68	NM_001080432	exon3	c.C590T	p.A197V	GCAGAGCAGCATA	.	277	90	240	0	.	5	3	2	0	0	5
GPR142	350383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72368576	72368576	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR142-93	NM_181790	exon4	c.C1226G	p.A409G	CGGCAGCCAACTT	.	137	35	99	0	.	0	0	0	0	0	5
NETO1	81832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	70417313	70417313	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NETO1-94	NM_001201465	exon9	c.G1525A	p.D509N	CTTTATCGTGTCT	.	46	17	48	0	.	0	0	0	0	0	5
ZNF555	148254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2853644	2853644	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF555-91	NM_152791	exon4	c.G1581C	p.V527V	ACATGTGAGAACG	.	156	40	110	0	.	1	0	1	0	0	5
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9058325	9058325	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUC16-566	NM_024690	exon3	c.C29121A	p.S9707R	ACCCCTGCTCATA	.	301	67	207	0	.	0	0	0	0	0	5
RASGRP4	115727	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	38905653	38905653	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RASGRP4-660	NM_170604	exon9	c.C1065G	p.L355L	GTCCTTGAGGTGC	.	287	16	139	0	.	0	0	0	0	0	3
KCNJ14	3770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48965218	48965218	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNJ14-91	NM_013348	exon2	c.C237G	p.A79A	GTTCACCACATGC	.	327	69	147	0	.	1	0	1	0	0	5
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	29439356	29439372	+	Frame_Shift_Del	DEL	CTGATGAACATCGTCAA	CTGATGAACATCGTCAA	-	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	CTGATGAACATCGTCAA	CTGATGAACATCGTCAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNRF3-69	NM_001206998	exon4	c.571_587del	p.191_196del	ATTAAGCTGATGA	.	45	16	102	0	.	0	0	0	0	0	3
FRMD4B	23150	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	69246086	69246086	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FRMD4B-72	NM_015123	exon13	c.C1057A	p.Q353K	GATGCTGACTAAT	.	118	36	152	1	.	1	1	0	0	0	3
ARGFX	503582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121289622	121289622	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARGFX-93	NM_001012659	exon2	c.C62T	p.S21F	ATTATTCCAACAT	.	303	115	350	1	.	0	0	0	0	0	4
IRF2	3660	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	185340713	185340715	+	In_Frame_Del	DEL	TCT	TCT	-	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	TCT	TCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IRF2-91	NM_002199	exon3	c.95_97del	p.32_33del	GAAAAATCTTCTT	.	24	13	39	0	.	0	0	0	0	0	3
CCDC125	202243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	68599726	68599726	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC125-90	NM_176816	exon6	c.G648C	p.E216D	CAAATTCTCTTTG	.	29	8	31	0	.	2	1	1	0	0	5
FAM114A2	10827	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	153372546	153372546	+	Missense_Mutation	SNP	A	A	G	rs202197693	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM114A2-90	NM_018691	exon14	c.T1508C	p.L503S	TGTTCTAACAAAG	.	115	54	115	1	A|0.999;G|0.001	22	6	16	0	0	3
HIST1H2AG	8969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27101075	27101075	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIST1H2AG-68	NM_021064	exon1	c.G225C	p.K75N	CAACAAGAAGACC	.	301	212	242	0	.	4	2	2	0	0	5
DNAH11	8701	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	21778372	21778372	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH11-146	.	.	.	.	CCTGGAGGAAATA	.	80	23	60	0	.	3	3	0	0	0	4
ARPC1B	10095	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	98988567	98988567	+	Silent	SNP	G	G	A	rs199528626	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARPC1B-90	NM_005720	exon6	c.G552A	p.P184P	CACCCCGTGGGGC	.	91	25	70	0	G|0.999;A|0.000	160	125	35	0	0	3
HYAL4	23553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123516971	123516971	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HYAL4-91	NM_012269	exon5	c.C1208A	p.A403E	ACCCTGCAAGTTA	.	222	57	201	0	.	0	0	0	0	0	5
TP53	7157	bcgsc.ca	37	17	7578526	7578526	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TP53-70225	NM_000546	exon5	c.G404A	p.C135Y	AGTTGGCAAAACA	.	106	76	79	2	.	28	1	27	0	0	1
GPX1	2876	broad.mit.edu	37	3	49395503	49395503	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPX1-68	.	.	.	.	ACCAGGCCCCGGG	.	172	12	94	1	.	786	780	6	0	0	1
COPG1	22820	hgsc.bcm.edu	37	3	128974928	128974928	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_016128	exon8	c.C510A	p.S170R	GTGCAGCTTTGAC	.	155	8	131	0	.	61	58	3	0	0	1
ND4L	0	broad.mit.edu;bcgsc.ca	37	MT	10671	10671	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361335	exon1	c.G202A	p.A68T	TTTGCCGCCTGCG	.	53	14	16	0	.	13877	8726	5097	34	20	2
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	13918	13918	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361567	exon1	c.T1582C	p.F528L	CTCGGATTCTACC	.	40	31	15	0	.	8661	2823	5834	2	2	2
ZZZ3	26009	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	78098574	78098574	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZZZ3-157	NM_015534	exon5	c.G466T	p.D156Y	GAAAATCTGCATC	.	159	14	120	0	.	4	4	0	0	0	3
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	208202216	208202216	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLXNA2-92	NM_025179	exon30	c.C5397G	p.L1799L	GGCATAGAGCAGC	.	171	152	136	0	.	1	1	0	0	0	5
RASGEF1A	221002	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	43698838	43698838	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RASGEF1A-227	NM_145313	exon3	c.T229A	p.S77T	CCCGGGAGCTCAG	.	285	35	195	0	.	0	0	0	0	0	4
DAAM1	23002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	59798591	59798591	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DAAM1-227	NM_001270520	exon15	c.G1921T	p.D641Y	ATTCTAGATCTTG	.	100	16	82	0	.	3	3	0	0	0	4
SERPINA10	51156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	94752476	94752476	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SERPINA10-228	NM_001100607	exon4	c.C1112A	p.S371X	GTAGCTGAGAGTT	.	114	37	108	0	.	0	0	0	0	0	5
IFT140	9742	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1642210	1642210	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IFT140-95	NM_014714	exon6	c.G601T	p.E201X	GCCCCTCGTGAGA	.	162	53	135	1	.	2	1	1	0	0	3
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7578378	7578392	+	In_Frame_Del	DEL	ATCTGAGCAGCGCTC	ATCTGAGCAGCGCTC	-	novel	unknown	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	ATCTGAGCAGCGCTC	ATCTGAGCAGCGCTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TP53-70225	NM_000546	exon5	c.538_552del	p.180_184del	ATCGCTATCTGAG	.	134	93	143	0	.	0	0	0	0	0	3
NF1	4763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	29554308	29554317	+	Frame_Shift_Del	DEL	AGGTATGCCC	AGGTATGCCC	-	novel	unknown	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	AGGTATGCCC	AGGTATGCCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NF1-3353	NM_000267	exon19	c.2324_2325del	p.775_775del	ACACTGAGGTATG	.	66	38	86	0	.	0	0	0	0	0	3
C18orf25	147339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	43796373	43796373	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C18orf25-515	NM_145055	exon2	c.G527A	p.S176N	ATCGGAGCCAAAA	.	168	154	161	1	.	5	1	4	0	0	4
EPB41L5	57669	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	120834600	120834601	+	Frame_Shift_Del	DEL	TT	TT	-	novel	unknown	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPB41L5-91	NM_020909	exon8	c.559_560del	p.187_187del	TCAGAGTTCAGAT	.	58	56	77	0	.	0	0	0	0	0	3
GALNT5	11227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	158115239	158115239	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GALNT5-290	NM_014568	exon1	c.C645G	p.D215E	AAGGGACTTGAAT	.	87	40	56	0	.	0	0	0	0	0	5
L3MBTL1	26013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	42157986	42157986	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	L3MBTL1-227	NM_032107	exon9	c.A968G	p.Y323C	CCATGTACTTCAT	.	446	107	177	0	.	1	1	0	0	0	5
HSPA13	6782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	15750609	15750609	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HSPA13-226	NM_006948	exon3	c.G491A	p.G164E	GGCATTCCAAGAT	.	73	44	55	0	.	15	8	7	0	0	5
SPECC1L	23384	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24717579	24717579	+	Missense_Mutation	SNP	G	G	T	rs113473482	unknown;alternate_allele	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPECC1L-92	NM_001145468	exon4	c.G631T	p.A211S	ATGCGTGCCCAGC	.	57	14	56	0	G|0.500;A|0.500	6	5	1	0	0	5
TOPAZ1	375337	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	44308516	44308516	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145030	exon6	c.G3048A	p.M1016I	CTTTATGGTCGGC	.	61	5	68	0	.	0	0	0	0	0	3
DENND6A	201627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57616477	57616477	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_152678	exon17	c.C1482G	p.T494T	TCTAGAGGTTAGC	.	36	21	61	0	.	6	4	2	0	0	5
CNTN3	5067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	74385793	74385793	+	Missense_Mutation	SNP	C	C	T	rs187262258	unknown	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTN3-137	NM_020872	exon11	c.G1381A	p.D461N	CTCCATCGTTTAA	.	78	69	81	0	C|0.999;T|0.000	0	0	0	0	0	5
TRIO	7204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	14387852	14387852	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRIO-562	NM_007118	exon23	c.C3777T	p.L1259L	AAGTCTCCAGCTA	.	126	48	119	0	.	0	0	0	0	0	5
SNCAIP	9627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	121758644	121758644	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SNCAIP-92	NM_005460	exon4	c.G212T	p.S71I	TGTACAGTAAGTT	.	259	117	255	0	.	0	0	0	0	0	5
GNPDA1	10007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141382735	141382735	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GNPDA1-90	NM_005471	exon6	c.C687G	p.F229L	CTGCTGGAAGGCA	.	184	92	176	0	.	13	4	9	0	0	5
ST18	9705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	53044607	53044607	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ST18-95	NM_014682	exon22	c.G2577C	p.W859C	CAGTTTCCAGGAG	.	330	170	179	0	.	0	0	0	0	0	5
STAU2	27067	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	74464276	74464276	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STAU2-90	NM_001164380	exon13	c.G1501C	p.E501Q	AATATTCCAGTTG	.	257	48	160	1	.	18	16	2	0	0	4
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113173641	113173641	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SVEP1-75	NM_153366	exon37	c.T6350A	p.V2117E	TTCAGTACAAAGC	.	101	34	66	0	.	2	1	1	0	0	5
ALAD	210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	116154411	116154411	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALAD-90	NM_000031	exon3	c.C152T	p.P51L	ACTCCTGGGAGGC	.	94	12	82	0	.	23	16	7	0	0	4
C17orf97	400566	broad.mit.edu	37	17	263687	263687	+	Silent	SNP	C	C	T	rs112578606	unknown	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C17orf97-91	NM_001013672	exon2	c.C1053T	p.A351A	CGAGGCCCTCAAG	.	135	8	105	0	C|0.500;T|0.500	46	40	6	0	0	1
CRIPAK	285464	hgsc.bcm.edu;ucsc.edu	37	4	1388867	1388867	+	Missense_Mutation	SNP	A	A	C	rs76058011	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRIPAK-90	NM_175918	exon1	c.A568C	p.I190L	CGCCTGATCACAC	.	145	30	37	0	A|0.994;C|0.006	12	1	11	0	0	2
PGLYRP4	57115	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153309754	153309754	+	Silent	SNP	G	G	A	rs184556258	unknown	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PGLYRP4-94	NM_020393	exon8	c.C846T	p.G282G	AATGGCGCCATCC	.	63	56	66	1	G|0.999;A|0.000	0	0	0	0	0	3
DNAJC12	56521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	69571291	69571291	+	Silent	SNP	T	T	G	novel	unknown	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAJC12-658	NM_021800	exon3	c.A288C	p.S96S	CTTCACTGAGTCA	.	149	49	170	0	.	0	0	0	0	0	5
TDRD1	56165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	115982440	115982440	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TDRD1-90	NM_198795	exon21	c.C2985T	p.D995D	TGGAGACGCATGC	.	47	6	71	0	.	0	0	0	0	0	4
KCNA6	3742	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	4919736	4919736	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNA6-93	NM_002235	exon1	c.G529A	p.A177T	GGCATCGCCATCG	.	244	50	132	1	.	0	0	0	0	0	3
GTSF1	121355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54857074	54857074	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GTSF1-90	NM_144594	exon4	c.C125A	p.P42H	ACATCAGGATGAT	.	165	86	103	0	.	0	0	0	0	0	5
SOGA2	23255	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	8826196	8826196	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_015210	exon15	c.C4688T	p.S1563L	GCCACTCGCTGGG	.	110	98	95	1	.	0	0	0	0	0	3
NWD1	284434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16861150	16861150	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NWD1-7	NM_001007525	exon6	c.T1697A	p.L566H	ACCAACTCTGCAC	.	82	34	63	0	.	0	0	0	0	0	5
TBCB	1155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36611666	36611666	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBCB-90	NM_001281	exon3	c.G313A	p.E105K	CGGGTGGAGAAGT	.	173	67	106	0	.	0	0	0	0	0	5
SLC4A11	83959	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	3210295	3210318	+	In_Frame_Del	DEL	GCTGGCGTTGAGGGCAGTGTGGAG	GCTGGCGTTGAGGGCAGTGTGGAG	-	novel	unknown	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	GCTGGCGTTGAGGGCAGTGTGGAG	GCTGGCGTTGAGGGCAGTGTGGAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC4A11-91	NM_001174090	exon14	c.1723_1746del	p.575_582del	GAGGAAGCTGGCG	.	148	45	74	0	.	0	0	0	0	0	3
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTNNB1-24361	NM_001098209	exon3	c.T133C	p.S45P	GCTCCTTCTCTGA	.	137	45	160	0	.	0	0	0	0	0	5
FBXW12	285231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48420011	48420011	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXW12-226	NM_207102	exon6	c.C610T	p.L204L	CCATTCCTGATGG	.	83	29	97	0	.	0	0	0	0	0	5
PCDHA9	9752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140230462	140230462	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHA9-138	NM_031857	exon1	c.T2382G	p.D794E	CTCAGATTCAACT	.	334	154	182	0	.	0	0	0	0	0	5
TAAR5	9038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	132910157	132910157	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAAR5-91	NM_003967	exon1	c.T669C	p.F223F	AACCACAAAGATC	.	75	27	99	0	.	0	0	0	0	0	5
ADGB	79747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	147054299	147054299	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_024694	exon21	c.T2564C	p.I855T	TTCAAATAACAAA	.	35	12	52	0	.	0	0	0	0	0	5
BCL7B	9275	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	72952314	72952314	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BCL7B-228	NM_001707	exon5	c.G466T	p.D156Y	GTTCATCAGCAAC	.	197	62	187	1	.	0	0	0	0	0	4
MKLN1	4289	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	131084167	131084167	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MKLN1-135	NM_013255	exon6	c.A678G	p.E226E	TTGCGAAGAGTTG	.	154	47	140	2	.	0	0	0	0	0	3
CPNE3	8895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87560662	87560662	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CPNE3-117	NM_003909	exon12	c.C1013T	p.A338V	ATGATGCGTGAGT	.	117	28	119	0	.	0	0	0	0	0	5
SPATA31E1	286234	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	90500470	90500470	+	Missense_Mutation	SNP	C	C	A	rs62578207	unknown;alternate_allele	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_178828	exon4	c.C1068A	p.F356L	CACATTCATCCAC	.	82	29	84	1	.	0	0	0	0	0	4
PBX3	5090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	128724400	128724400	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PBX3-91	NM_006195	exon7	c.C1029T	p.N343N	TTTTAACCTCCCA	.	63	11	62	0	.	0	0	0	0	0	4
C1orf158	93190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	12815709	12815709	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C1orf158-92	NM_152290	exon2	c.C171A	p.F57L	CCCCTTCCCAGAC	.	354	162	340	1	.	0	0	0	0	0	4
MACF1	23499	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39851188	39851188	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MACF1-165	NM_012090	exon53	c.G7745T	p.G2582V	GCCCTGGAGATGT	.	166	65	172	2	.	0	0	0	0	0	3
RPRD2	23248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150443166	150443166	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RPRD2-23	NM_015203	exon11	c.G1742A	p.S581N	CCTCCAGTGCCCA	.	80	40	66	0	.	0	0	0	0	0	5
INTS3	65123	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153721204	153721204	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	INTS3-93	NM_023015	exon6	c.G557C	p.S186T	CAGAAAGTGTTCT	.	197	55	129	2	.	0	0	0	0	0	3
HAPLN2	60484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156593357	156593357	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HAPLN2-90	NM_021817	exon3	c.A75G	p.Q25Q	AGCCCAAGGAGAC	.	53	6	67	0	.	0	0	0	0	0	4
GPA33	10223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167042639	167042639	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPA33-90	NM_005814	exon2	c.C181A	p.L61I	GGAGGAGCTTATC	.	130	29	145	0	.	0	0	0	0	0	5
TNN	63923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175046673	175046673	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNN-138	NM_022093	exon2	c.T119A	p.V40D	AACAGGTCACTGT	.	144	57	145	0	.	0	0	0	0	0	5
ZNF281	23528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	200378016	200378016	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF281-154	NM_012482	exon2	c.C818T	p.S273F	TGATAGGAGCTTC	.	179	35	159	0	.	0	0	0	0	0	5
CENPF	1063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	214816433	214816433	+	Silent	SNP	C	C	T	rs200241672	unknown;alternate_allele	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CENPF-567	NM_016343	exon12	c.C4752T	p.L1584L	AGAGCTCGAGCAG	.	102	47	102	0	C|0.999;G|0.001	0	0	0	0	0	5
OBSCN	84033	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228563506	228563506	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OBSCN-403	NM_001271223	exon109	c.T25638C	p.I8546I	CTACATTGTGCAG	.	208	82	204	1	.	0	0	0	0	0	4
PCNXL2	80003	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	233388165	233388165	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCNXL2-91	NM_014801	exon7	c.G2063C	p.G688A	TCAGGCCCACTGA	.	237	15	229	0	.	0	0	0	0	0	3
HEATR1	55127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236722384	236722384	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HEATR1-93	NM_018072	exon35	c.G4822A	p.V1608M	TGCCCACCAGCCC	.	59	23	27	0	.	0	0	0	0	0	5
LIPN	643418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	90528645	90528645	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001102469	exon5	c.T632C	p.I211T	CGGGCATTTTTAC	.	68	33	68	0	.	0	0	0	0	0	5
IFIT1B	439996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	91143636	91143636	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IFIT1B-90	NM_001010987	exon2	c.A566T	p.D189V	GCCTGGATAAATT	.	79	12	80	0	.	0	0	0	0	0	4
CCDC147	159686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	106159171	106159171	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC147-71	NM_001008723	exon12	c.A1728T	p.E576D	TATTGAAAAGCAA	.	89	15	101	0	.	0	0	0	0	0	4
TCF7L2	6934	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	114711350	114711350	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TCF7L2-586	NM_001198526	exon3	c.C365A	p.S122X	CGCTCTCGCCCAC	.	114	26	114	0	.	0	0	0	0	0	4
OR56A3	390083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5969056	5969056	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR56A3-68	NM_001003443	exon1	c.T480C	p.T160T	TATGACTCTGCCC	.	165	42	151	0	.	0	0	0	0	0	5
CTR9	9646	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	10796822	10796822	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTR9-92	NM_014633	exon23	c.G2954A	p.R985H	AACGACGTCCACC	.	80	15	77	2	.	0	0	0	0	0	3
OR4C16	219428	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	55339779	55339779	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4C16-70	NM_001004701	exon1	c.T176A	p.F59Y	TGTTCTTCTTCCT	.	217	12	159	0	.	0	0	0	0	0	3
OR4C6	219432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55432669	55432669	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4C6-70	NM_001004704	exon1	c.A27C	p.E9D	GACTGAATTCATT	.	33	7	28	0	.	0	0	0	0	0	4
OR5L2	26338	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55595126	55595126	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR5L2-69	NM_001004739	exon1	c.G432A	p.L144L	GGAGCTGACCTCT	.	238	51	226	1	.	0	0	0	0	0	3
PPFIA1	8500	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	70228237	70228237	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPFIA1-228	NM_003626	exon27	c.G3594A	p.R1198R	AGTCAGGACTTAC	.	215	19	76	0	.	0	0	0	0	0	3
SHANK2	22941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	70333395	70333395	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SHANK2-94	NM_133266	exon10	c.C1239T	p.Y413Y	GGGGACGTAGACG	.	335	82	167	0	.	0	0	0	0	0	5
WNT11	7481	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	75898196	75898196	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WNT11-562	NM_004626	exon5	c.C978T	p.V326V	CCGCTCGACCACG	.	163	14	80	0	.	0	0	0	0	0	3
USP28	57646	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	113679796	113679796	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP28-706	NM_020886	exon17	c.C2153G	p.S718C	GATGTAGAGTAGT	.	250	61	283	2	.	0	0	0	0	0	3
VSIG2	23584	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	124618582	124618582	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VSIG2-93	NM_014312	exon5	c.C664T	p.Q222X	CCATCTGGTTGGT	.	149	45	158	1	.	0	0	0	0	0	3
FGF23	8074	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	4488634	4488634	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FGF23-660	NM_020638	exon1	c.C115G	p.L39V	GGATCAGGCCACC	.	107	9	54	0	.	0	0	0	0	0	3
SCNN1A	6337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6457898	6457898	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCNN1A-90	NM_001159576	exon11	c.G1801A	p.V601I	CCGTGACAGAGGG	.	175	24	178	0	.	0	0	0	0	0	5
PTPN6	5777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	7060782	7060782	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPN6-703	NM_080548	exon2	c.C25T	p.R9X	TTTCACCGAGACC	.	115	9	113	0	.	0	0	0	0	0	3
CD163L1	283316	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7522051	7522051	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CD163L1-100	NM_174941	exon15	c.G3941A	p.R1314Q	TTGCACCGCATGT	.	88	28	71	1	.	0	0	0	0	0	3
HDAC7	51564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	48189737	48189737	+	Silent	SNP	T	T	G	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HDAC7-289	NM_015401	exon9	c.A858C	p.T286T	GGACACTGTCGGC	.	122	20	80	0	.	0	0	0	0	0	4
KIF5A	3798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57976934	57976934	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF5A-517	NM_004984	exon28	c.C3071G	p.P1024R	TTTTCCCTCTCCA	.	130	31	90	0	.	0	0	0	0	0	5
SYCP3	50511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	102122734	102122734	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SYCP3-90	NM_001177949	exon9	c.C682T	p.R228W	ACTTCCGAACACT	.	90	20	71	0	.	0	0	0	0	0	4
LHX5	64211	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	113906071	113906071	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LHX5-90	NM_022363	exon3	c.A536G	p.K179R	CGCCGCTTGGTGC	.	268	14	173	0	.	0	0	0	0	0	3
NOS1	4842	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	117725978	117725978	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOS1-154	NM_000620	exon5	c.C1028T	p.P343L	TGAGAAGGATGCA	.	130	61	104	1	.	0	0	0	0	0	3
SRRM4	84530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	119583269	119583269	+	Silent	SNP	C	C	T	rs201517536	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SRRM4-2	NM_194286	exon9	c.C855T	p.Y285Y	GGAGTACGACTCA	.	103	40	102	0	C|1.000;T|0.000	0	0	0	0	0	5
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	120589045	120589045	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GCN1L1-94	NM_006836	exon34	c.G4213A	p.V1405M	CCTTCACCAGGCC	.	101	15	105	0	.	0	0	0	0	0	4
CLIP1	6249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122812908	122812908	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLIP1-155	NM_001247997	exon16	c.G2933C	p.S978T	TCAATACTTTTTT	.	71	14	50	0	.	0	0	0	0	0	5
GSX1	219409	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	28367932	28367932	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GSX1-69	NM_145657	exon2	c.C642T	p.G214G	TGGCGGCGGCGGC	.	180	80	98	1	.	0	0	0	0	0	4
ALKBH1	8846	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	78161095	78161095	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALKBH1-228	NM_006020	exon3	c.C441A	p.S147R	CTCTTTGCTCTGT	.	77	6	72	0	.	0	0	0	0	0	3
SNW1	22938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	78205323	78205323	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SNW1-187	NM_012245	exon4	c.G412T	p.E138X	TAGCTTCTTCATC	.	143	13	134	0	.	0	0	0	0	0	4
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	102484794	102484794	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DYNC1H1-98	NM_001376	exon41	c.G8184A	p.L2728L	GTTCCTGCGCCAC	.	79	7	79	0	.	0	0	0	0	0	3
HOMER2	9455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83527785	83527785	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HOMER2-67	NM_199330	exon5	c.C523G	p.Q175E	ACCTCTGCGTCAA	.	123	42	107	0	.	0	0	0	0	0	5
SEC11A	23478	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	85230912	85230912	+	Silent	SNP	A	A	G	rs71395463	unknown;alternate_allele	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEC11A-23	NM_014300	exon3	c.T255C	p.F85F	TATCCTAAAAACA	.	113	7	92	0	A|0.500;T|0.500	0	0	0	0	0	3
C16orf89	146556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	5097933	5097933	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C16orf89-92	NM_001098514	exon7	c.C901A	p.Q301K	GATATTGAATAGC	.	39	18	29	0	.	0	0	0	0	0	5
VPS35	55737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	46705646	46705646	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VPS35-90	NM_018206	exon12	c.C1495T	p.R499C	CAGAGCGCAGCAG	.	154	29	147	0	.	0	0	0	0	0	5
ABCC11	85320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	48261750	48261750	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCC11-95	NM_033151	exon3	c.C362G	p.S121X	TGGACTGACAGTG	.	111	20	151	0	.	0	0	0	0	0	5
CDH5	1003	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	66420935	66420935	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH5-525	NM_001795	exon3	c.A434G	p.N145S	ACGTGAACGACAA	.	345	18	272	0	.	0	0	0	0	0	3
NOS2	4843	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26110037	26110037	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOS2-156	NM_000625	exon6	c.T563A	p.F188Y	GTGGCGAAGATGA	.	228	45	147	1	.	0	0	0	0	0	4
ASIC2	40	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	31618452	31618452	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_183377	exon1	c.C682G	p.L228V	CGCAGAGCTCGCC	.	116	17	85	0	.	0	0	0	0	0	4
AATF	26574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	35310421	35310421	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AATF-90	NM_012138	exon3	c.G519C	p.E173D	GGAGGAGGAAGAC	.	306	116	244	0	.	0	0	0	0	0	5
C17orf78	284099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	35734873	35734873	+	Missense_Mutation	SNP	G	G	A	rs184660990	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_173625	exon2	c.G115A	p.V39M	AAAGACGTGAGAA	.	323	49	262	0	G|0.999;A|0.001	0	0	0	0	0	4
KLHL10	317719	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	39998282	39998282	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLHL10-227	NM_152467	exon2	c.A402T	p.S134S	CAAGTCAGAGCTG	.	301	20	229	0	.	0	0	0	0	0	3
TBX21	30009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	45821703	45821703	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBX21-90	NM_013351	exon4	c.C911G	p.A304G	TGACTGCCTACCA	.	211	26	177	0	.	0	0	0	0	0	4
WFIKKN2	124857	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48916914	48916914	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WFIKKN2-93	NM_175575	exon2	c.G265A	p.V89M	AGCTGCGTGGCGG	.	270	98	186	1	.	0	0	0	0	0	3
TOM1L1	10040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	52993172	52993172	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TOM1L1-91	NM_005486	exon7	c.G669C	p.L223F	CATATTGATGGAG	.	161	32	156	0	.	0	0	0	0	0	5
TBX4	9496	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	59560686	59560686	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBX4-227	NM_018488	exon8	c.C1447T	p.R483X	CAGGTCCGAGAGC	.	173	58	168	0	.	0	0	0	0	0	4
PITPNC1	26207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65683182	65683182	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PITPNC1-226	NM_181671	exon9	c.A683G	p.D228G	TTTCAGATATGAC	.	138	27	96	0	.	0	0	0	0	0	5
RBFOX3	146713	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	77093792	77093792	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001082575	exon10	c.G604A	p.D202N	CAGGCCCGTAGAC	.	350	62	221	0	.	0	0	0	0	0	4
CCDC178	374864	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	30926226	30926226	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001105528	exon8	c.G607C	p.D203H	AAGAGTCAATTTT	.	96	9	95	0	.	0	0	0	0	0	3
LOXHD1	125336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	44118286	44118286	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_144612	exon26	c.A3928G	p.I1310V	GGGTGATCTCGTA	.	134	27	118	0	.	0	0	0	0	0	5
CD209	30835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7808071	7808071	+	Missense_Mutation	SNP	C	C	T	rs200282091	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CD209-91	NM_021155	exon7	c.G1069A	p.A357T	ATTCCGCGCAGTC	.	147	44	130	0	C|0.999;T|0.000	0	0	0	0	0	5
PRR19	284338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	42814036	42814036	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRR19-68	NM_199285	exon2	c.C300T	p.P100P	CAGCCCCACACTC	.	38	5	52	0	.	0	0	0	0	0	3
FAM83E	54854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	49104471	49104471	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM83E-91	NM_017708	exon5	c.A1332G	p.P444P	TCGGGCTGGGGAC	.	71	6	54	0	.	0	0	0	0	0	3
KLK11	11012	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51527336	51527336	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLK11-650	NM_144947	exon4	c.T524C	p.L175P	GAAATGAGGCAGC	.	111	14	105	1	.	0	0	0	0	0	3
NLRP4	147945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56369429	56369429	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRP4-216	NM_134444	exon3	c.G670T	p.E224X	CAACCGGAGAGAC	.	102	14	111	0	.	0	0	0	0	0	4
PEG3	5178	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	57327088	57327088	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PEG3-164	NM_001146184	exon9	c.G2722T	p.V908F	CAGGAACACTTTT	.	69	5	48	0	.	0	0	0	0	0	3
CPSF3	51692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	9580674	9580674	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CPSF3-153	NM_016207	exon8	c.C815T	p.S272L	ATGCATCATCTTT	.	142	45	145	0	.	0	0	0	0	0	5
CCDC121	79635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27850291	27850291	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC121-68	NM_001142683	exon2	c.G862A	p.E288K	TCTCCTCCTGTAA	.	48	13	49	0	.	0	0	0	0	0	5
FAM179A	165186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	29274646	29274646	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM179A-26	NM_199280	exon20	c.G2747A	p.R916Q	ACCCCCGGAAGCC	.	170	16	157	0	.	0	0	0	0	0	4
PLEKHH2	130271	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	43984346	43984346	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLEKHH2-92	NM_172069	exon26	c.T3884A	p.V1295D	AGCAAGTCATAGA	.	108	6	102	0	.	0	0	0	0	0	3
SRBD1	55133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	45801796	45801796	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SRBD1-90	NM_018079	exon8	c.A1139G	p.D380G	TCTTTGTCTTTAG	.	89	21	90	0	.	0	0	0	0	0	5
KRCC1	51315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	88327571	88327571	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRCC1-69	NM_016618	exon4	c.C512G	p.S171X	TCCTCTGATTTTT	.	52	20	71	0	.	0	0	0	0	0	5
CNNM4	26504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	97475185	97475185	+	Silent	SNP	C	C	T	rs187426899	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNNM4-154	NM_020184	exon7	c.C2259T	p.D753D	GGTGGACGAGACC	.	203	86	178	0	C|0.999;T|0.000	0	0	0	0	0	5
PDCL3	79031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	101192892	101192892	+	Silent	SNP	C	C	T	rs145184150	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDCL3-90	NM_024065	exon6	c.C654T	p.D218D	TGAAGACGTGTTG	.	84	14	92	0	C|0.999;T|0.001	0	0	0	0	0	4
LY75	4065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160676404	160676404	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LY75-90	NM_002349	exon29	c.C3986A	p.T1329N	AGTGGGGTCTTAT	.	54	19	58	0	.	0	0	0	0	0	5
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179445121	179445121	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_001267550	exon317	c.G66985T	p.A22329S	TTCCTGCATCATA	.	93	34	116	0	.	0	0	0	0	0	5
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220354432	220354432	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPEG-383	NM_005876	exon36	c.A8692G	p.T2898A	TCCTCTACTCCTG	.	65	39	55	0	.	0	0	0	0	0	5
C20orf112	140688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	31115669	31115669	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C20orf112-514	NM_001256798	exon2	c.C369T	p.V123V	CACAGCGACCCGC	.	104	27	83	0	.	0	0	0	0	0	5
WFDC8	90199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	44184408	44184408	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WFDC8-90	NM_181510	exon4	c.G377A	p.R126K	CAGCCCCTGTATT	.	94	11	77	0	.	0	0	0	0	0	4
SON	6651	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	34924819	34924819	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SON-97	NM_032195	exon3	c.G3282A	p.S1094S	GATGTCGTCATAC	.	324	72	263	1	.	0	0	0	0	0	3
CHEK2	11200	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	29121006	29121006	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHEK2-1515	NM_001005735	exon5	c.A680T	p.N227I	TTGTTATTCAAAG	.	222	15	167	0	.	0	0	0	0	0	3
C22orf31	25770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	29454817	29454817	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C22orf31-90	NM_015370	exon3	c.G786C	p.Q262H	GTCCCTCTGAGCA	.	112	17	87	0	.	0	0	0	0	0	4
CSF2RB	1439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	37333549	37333549	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSF2RB-93	NM_000395	exon14	c.C1699G	p.P567A	CAGCCCCCCAGCC	.	65	7	47	0	.	0	0	0	0	0	4
ENTHD1	150350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40140106	40140106	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ENTHD1-93	NM_152512	exon7	c.C1402T	p.L468L	GATGCAGCTTGGC	.	155	25	129	0	.	0	0	0	0	0	5
ARPP21	10777	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	35730810	35730810	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARPP21-93	NM_001267619	exon6	c.G418T	p.E140X	AGCCAAGAATACA	.	276	83	236	2	.	0	0	0	0	0	3
MLH1	4292	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	37055929	37055929	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLH1-2559	NM_000249	exon9	c.G684C	p.L228L	AGAACTGATAGAA	.	115	9	124	0	.	0	0	0	0	0	3
CCDC14	64770	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	123650270	123650270	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC14-68	NM_022757	exon10	c.G1551A	p.V517V	TTCAATCACTTTT	.	22	4	31	0	.	0	0	0	0	0	3
CCDC39	339829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	180372596	180372596	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC39-72	NM_181426	exon7	c.C884T	p.T295M	TATGCCGTTCTAC	.	95	20	74	0	.	0	0	0	0	0	5
MCF2L2	23101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	182941972	182941972	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MCF2L2-293	NM_015078	exon19	c.G2122C	p.D708H	GAAGATCTTCTTT	.	17	8	16	0	.	0	0	0	0	0	4
ECE2	9718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183975278	183975278	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ECE2-94	NM_014693	exon2	c.C214G	p.L72V	AGTGCCCTGAGCT	.	98	9	93	0	.	0	0	0	0	0	4
RTP1	132112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	186917619	186917619	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RTP1-155	NM_153708	exon2	c.C553T	p.R185W	AACCGGCGGCACC	.	215	26	54	0	.	0	0	0	0	0	3
TMEM44	93109	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	194336340	194336340	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM44-90	NM_001166305	exon8	c.A1011G	p.Q337Q	AAGGGCTTGGGTG	.	129	10	108	0	.	0	0	0	0	0	3
GRK4	2868	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	2990469	2990469	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRK4-507	NM_182982	exon3	c.G164C	p.S55T	ATAGCAGTCTTTG	.	113	9	80	0	.	0	0	0	0	0	3
BLOC1S4	55330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	6718286	6718286	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_018366	exon1	c.G350A	p.G117D	GCGAGGGCGTGCC	.	85	36	32	0	.	0	0	0	0	0	5
CORIN	10699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	47788784	47788784	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CORIN-91	NM_006587	exon3	c.A367T	p.T123S	CATCCGTAGTCCA	.	215	32	147	0	.	0	0	0	0	0	5
TEC	7006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	48172291	48172291	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TEC-1004	NM_003215	exon5	c.G428T	p.C143F	TTTTCACATCCGG	.	194	42	185	0	.	0	0	0	0	0	5
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79440544	79440544	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FRAS1-68	NM_025074	exon67	c.C10449G	p.I3483M	CTACATCTATGTG	.	104	42	93	0	.	0	0	0	0	0	5
GK2	2712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	80327936	80327936	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GK2-94	NM_033214	exon1	c.C1419T	p.S473S	TTCAAGGCTCCAA	.	262	27	170	0	.	0	0	0	0	0	4
MMRN1	22915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	90872784	90872784	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MMRN1-94	NM_007351	exon7	c.G3147A	p.P1049P	GCATCCGTGCCAA	.	145	26	128	0	.	0	0	0	0	0	4
C4orf21	55345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	113505163	113505163	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C4orf21-90	NM_018392	exon15	c.A4269G	p.P1423P	ATAAAGTGGTATC	.	66	18	56	0	.	0	0	0	0	0	5
GLRB	2743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	158074152	158074152	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GLRB-92	NM_000824	exon9	c.G1187T	p.S396I	ATATTAGCACTTT	.	81	13	118	0	.	0	0	0	0	0	4
DDX60L	91351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	169369890	169369890	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DDX60L-69	NM_001012967	exon9	c.T1037G	p.V346G	CCAAAAACGTTTA	.	260	37	210	0	.	0	0	0	0	0	5
ACSL1	2180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	185686036	185686036	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACSL1-92	NM_001995	exon15	c.G1403A	p.C468Y	GTCAGGCAGCACC	.	157	30	222	0	.	0	0	0	0	0	5
IRX4	50805	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1879672	1879672	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IRX4-226	NM_016358	exon4	c.G682T	p.E228X	CCCCCTCCTCCTC	.	145	58	139	1	.	0	0	0	0	0	3
FAM173B	134145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	10239180	10239180	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM173B-91	NM_199133	exon2	c.T305A	p.I102N	CTCACAATGCGTC	.	38	17	46	0	.	0	0	0	0	0	4
MAP3K1	4214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	56155597	56155597	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAP3K1-956	NM_005921	exon3	c.C689T	p.A230V	TAGCAGCTGAGTC	.	128	15	222	0	.	0	0	0	0	0	4
RASGRF2	5924	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	80409739	80409739	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RASGRF2-725	NM_006909	exon15	c.G2470T	p.A824S	CAAAAAGGTATTA	.	42	14	55	0	.	0	0	0	0	0	3
HARS2	23438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140075331	140075331	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HARS2-90	NM_012208	exon6	c.C534T	p.D178D	TTTTGACATTGCT	.	148	22	190	0	.	0	0	0	0	0	5
PCDHGB7	56099	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140797965	140797965	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHGB7-29	NM_018927	exon1	c.T539C	p.L180S	TCTCATTGGTGGA	.	122	12	122	0	.	0	0	0	0	0	3
TXNDC5	81567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	7904880	7904880	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TXNDC5-90	NM_030810	exon2	c.G340A	p.V114I	CATAGACTTTGGC	.	76	13	86	0	.	0	0	0	0	0	4
TRIM39	56658	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	30297383	30297383	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRIM39-161	NM_021253	exon3	c.G289A	p.V97I	CAGGCCGTCAAGC	.	155	13	139	0	.	0	0	0	0	0	3
SKIV2L	6499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31927812	31927812	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SKIV2L-290	NM_006929	exon3	c.C152T	p.A51V	CTTGTGCCCCAGA	.	75	11	81	0	.	0	0	0	0	0	4
SKIV2L	6499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31927815	31927815	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SKIV2L-290	NM_006929	exon3	c.C155A	p.P52Q	GTGCCCCAGATCT	.	73	10	81	0	.	0	0	0	0	0	4
SKIV2L	6499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31928995	31928995	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SKIV2L-290	NM_006929	exon8	c.A621G	p.G207G	TCCTGGACTACTA	.	147	15	133	0	.	0	0	0	0	0	4
HLA-DOB	3112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	32782314	32782314	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HLA-DOB-91	NM_002120	exon3	c.C426T	p.H142H	AGAGCAGTGCAGC	.	137	18	134	0	.	0	0	0	0	0	3
NFYA	4800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41057410	41057410	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NFYA-226	NM_002505	exon5	c.C402G	p.I134M	CATCATCCAGCAG	.	233	33	178	0	.	0	0	0	0	0	5
CUL9	23113	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43181477	43181477	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CUL9-529	NM_015089	exon29	c.C5515G	p.P1839A	CCTGGGCCCCAGC	.	69	37	52	1	.	0	0	0	0	0	4
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51890570	51890570	+	Silent	SNP	G	G	A	rs147584295	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKHD1-603	NM_170724	exon32	c.C4038T	p.N1346N	GCTCACGTTGCCC	.	134	61	148	0	G|0.999;A|0.001	0	0	0	0	0	5
SERINC1	57515	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	122772896	122772925	+	Frame_Shift_Del	DEL	ATTCCTACAAAAAAAAAAAAAAAAAAATAT	ATTCCTACAAAAAAAAAAAAAAAAAAATAT	-	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	ATTCCTACAAAAAAAAAAAAAAAAAAATAT	ATTCCTACAAAAAAAAAAAAAAAAAAATAT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SERINC1-91	NM_020755	exon7	c.760_763del	p.254_255del	GTTGTGATTCCTA	.	82	12	81	0	.	0	0	0	0	0	3
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	129465098	129465098	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LAMA2-162	NM_000426	exon5	c.A692C	p.E231A	CTCCAGAACTGCT	.	71	11	59	0	.	0	0	0	0	0	4
MED23	9439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	131914268	131914268	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MED23-24	NM_015979	exon25	c.G3294A	p.W1098X	GAATCTCCAGTCA	.	188	86	209	0	.	0	0	0	0	0	5
RFC2	5982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73649931	73649931	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RFC2-229	NM_181471	exon10	c.C885T	p.I295I	GCCAATGATATCT	.	168	55	114	0	.	0	0	0	0	0	5
MOSPD3	64598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100212602	100212602	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MOSPD3-92	NM_001040098	exon5	c.T624A	p.P208P	GCTGCCTCAAGTC	.	100	20	75	0	.	0	0	0	0	0	5
CPED1	79974	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	120768496	120768496	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001105533	exon10	c.A1363T	p.M455L	TCAATTATGACTT	.	306	21	270	0	.	0	0	0	0	0	3
MYOM2	9172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	2040266	2040266	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYOM2-95	NM_003970	exon16	c.C1921A	p.L641M	GAGGACCTGCTGG	.	265	126	218	1	.	0	0	0	0	0	4
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	139793209	139793209	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL22A1-103	NM_152888	exon13	c.G1611T	p.L537L	GCCGGGCAGGCCC	.	76	39	33	0	.	0	0	0	0	0	5
UHRF2	115426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	6460639	6460639	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UHRF2-721	NM_152896	exon4	c.G711C	p.L237F	CATTTTGAAATGG	.	85	11	67	0	.	0	0	0	0	0	4
UHRF2	115426	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	6460721	6460721	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UHRF2-721	NM_152896	exon4	c.G793C	p.D265H	TGGTTTGATGCAG	.	110	12	87	0	.	0	0	0	0	0	3
SPATA31A6	389730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	43627272	43627272	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145196	exon4	c.T1415C	p.L472P	TGGGACAGGGGCT	.	95	20	106	0	.	0	0	0	0	0	5
GADD45G	10912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	92220393	92220393	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GADD45G-514	NM_006705	exon2	c.C100T	p.Q34X	TCGGCGCAGCGTC	.	83	37	54	0	.	0	0	0	0	0	5
BAAT	570	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	104124861	104124861	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BAAT-228	NM_001127610	exon4	c.C1106A	p.S369Y	AGAGGAGAATAGG	.	194	79	173	1	.	0	0	0	0	0	4
OR13C3	138803	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107298937	107298937	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR13C3-69	NM_001001961	exon1	c.T158C	p.I53T	ATCTCAATCTTTG	.	183	32	168	1	.	0	0	0	0	0	4
DFNB31	25861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	117185706	117185706	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DFNB31-95	NM_001173425	exon7	c.C1514T	p.A505V	TGCCGCGCCTTCA	.	187	47	166	0	.	0	0	0	0	0	5
USP20	10868	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	132637739	132637739	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP20-658	NM_001008563	exon20	c.C2199T	p.T733T	CCAGACCTTCCTC	.	122	16	99	1	.	0	0	0	0	0	3
ABL1	25	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	133760173	133760173	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABL1-3810	NM_007313	exon11	c.C2553T	p.H851H	CCCCCACAAGGAA	.	171	51	168	0	.	0	0	0	0	0	5
MAGEB4	4115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	30261199	30261199	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAGEB4-131	NM_002367	exon1	c.G947A	p.G316E	GAGCTGGAGCCCG	.	60	19	63	0	.	0	0	0	0	0	5
PIN4	5303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	71417263	71417263	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIN4-130	NM_006223	exon4	c.C358G	p.Q120E	CCATTTCAAGAAG	.	442	86	350	0	.	0	0	0	0	0	5
MAGEE1	57692	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	75648451	75648451	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAGEE1-262	NM_020932	exon1	c.C128G	p.S43X	CAGGCTCAGACGT	.	336	19	247	0	.	0	0	0	0	0	3
SPANXN3	139067	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	142605206	142605206	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPANXN3-132	NM_001009609	exon1	c.C14A	p.T5N	CTGGAAGTTGGCT	.	95	23	111	2	.	0	0	0	0	0	3
NUP214	8021	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	134073007	134073008	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NUP214-1131	NM_005085	exon29	c.4126_4127insC	p.A1376fs	TTTACTGCCCCCC	.	130	14	147	0	.	0	0	0	0	0	3
DHCR24	1718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	55337052	55337052	+	Missense_Mutation	SNP	C	C	G	rs181555625	unknown;alternate_allele	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DHCR24-91	NM_014762	exon5	c.G847C	p.V283L	TCATGACCCCTGT	.	60	6	80	0	C|0.999;A|0.000	8	8	0	0	0	4
FCRL2	79368	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	157740445	157740445	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FCRL2-92	NM_030764	exon3	c.64delC	p.L22fs	CCACAAGGGTCAG	.	56	16	36	0	.	0	0	0	0	0	3
SLC25A16	8034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70243288	70243288	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC25A16-90	NM_152707	exon9	c.C900G	p.L300L	ACGATAGAGTCCT	.	51	12	38	0	.	1	0	1	0	0	5
NTF3	4908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	5604093	5604093	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NTF3-205	NM_001102654	exon2	c.G752A	p.R251Q	GCTGGCGGTGGAT	.	79	24	59	0	.	0	0	0	0	0	5
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6174404	6174404	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VWF-163	NM_000552	exon11	c.A1192T	p.S398C	CAAAGCTCTTGAA	.	170	57	111	0	.	3	3	0	0	0	5
OR4K5	79317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20389141	20389141	+	Missense_Mutation	SNP	A	A	C	rs200386813	unknown;alternate_allele	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4K5-70	NM_001005483	exon1	c.A376C	p.I126L	GTAGCCATATGCA	.	259	42	163	0	A|0.999;G|0.001	0	0	0	0	0	5
HECTD1	25831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	31647449	31647449	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HECTD1-570	NM_015382	exon3	c.G152A	p.R51H	AAAGTGCGAGGAG	.	40	13	33	0	.	0	0	0	0	0	5
TTLL5	23093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	76219245	76219245	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTLL5-92	NM_015072	exon18	c.C1497T	p.L499L	CTACCTCGAGCAT	.	35	12	32	0	.	0	0	0	0	0	5
CHD2	1106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	93521561	93521561	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHD2-229	NM_001271	exon21	c.A2675G	p.Q892R	ACCCCCAGAATGA	.	45	11	37	0	.	0	0	0	0	0	5
FLCN	201163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	17131266	17131266	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FLCN-1292	NM_144997	exon4	c.C186A	p.S62R	TGCGGGGCTGTGC	.	196	69	123	0	.	0	0	0	0	0	5
EIF1	10209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39847059	39847059	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EIF1-90	NM_005801	exon4	c.T323C	p.L108P	ATCAGCTGAAGGT	.	126	48	120	0	.	1395	734	661	0	0	5
SERPINB12	89777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61223496	61223496	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SERPINB12-227	NM_080474	exon1	c.T104C	p.L35P	TGAGCCTCTCAGC	.	136	51	112	0	.	0	0	0	0	0	5
SPTBN4	57731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41063159	41063159	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPTBN4-94	NM_020971	exon26	c.C5520T	p.F1840F	GTTCTTCAGTGAC	.	135	41	105	0	.	0	0	0	0	0	5
C2orf71	388939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	29295883	29295883	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C2orf71-91	NM_001029883	exon1	c.A1245T	p.S415S	AGCCCCTGAGAGC	.	159	58	118	0	.	0	0	0	0	0	5
SLC5A7	60482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	108627278	108627278	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC5A7-93	NM_021815	exon9	c.C1704T	p.S568S	TGATTCCAGTCCA	.	21	10	18	0	.	0	0	0	0	0	4
IWS1	55677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128281317	128281317	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IWS1-91	NM_017969	exon2	c.G85C	p.G29R	CCTCACCGTCTGA	.	101	33	47	0	.	0	0	0	0	0	5
HJURP	55355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234750050	234750050	+	Missense_Mutation	SNP	G	G	A	rs148843421	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HJURP-69	NM_018410	exon8	c.C1376T	p.P459L	GAGTCCGGGAGGC	.	82	17	77	0	G|1.000;A|0.000	0	0	0	0	0	4
TRIB3	57761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	368653	368653	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRIB3-359	.	.	.	.	TTTACCAGATGCG	.	46	17	40	0	.	4	0	4	0	0	4
SPECC1L	23384	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24709364	24709364	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPECC1L-92	NM_001145468	exon3	c.C237G	p.C79W	CACCTGCCCATCT	.	233	84	164	0	.	0	0	0	0	0	5
PDCD6IP	10015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	33877676	33877676	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDCD6IP-228	NM_001162429	exon8	c.C990T	p.D330D	TCCAGACCTTAAA	.	153	53	110	0	.	2	2	0	0	0	5
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTNNB1-24361	NM_001098209	exon3	c.T133C	p.S45P	GCTCCTTCTCTGA	.	134	57	116	0	.	16	10	6	0	0	5
GABRB1	2560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	47408836	47408836	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GABRB1-92	NM_000812	exon8	c.G973A	p.A325T	GAGTATGCCTTTG	.	98	39	80	0	.	0	0	0	0	0	5
RAD50	10111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	131927722	131927722	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAD50-229	NM_005732	exon11	c.T1789C	p.L597L	GCCAAATTGAAGT	.	144	54	118	0	.	0	0	0	0	0	5
PCDHB5	26167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140515569	140515569	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB5-95	NM_015669	exon1	c.C553T	p.R185C	CATAATCGCGGAG	.	142	57	136	0	.	0	0	0	0	0	5
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170648797	170648797	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RANBP17-524	NM_022897	exon22	c.A2375G	p.N792S	CTCCTAATGGAAT	.	29	13	34	0	.	0	0	0	0	0	5
SERPINA7	6906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	105277575	105277575	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SERPINA7-226	NM_000354	exon5	c.T1164A	p.D388E	AGATCTATCAATT	.	230	99	233	0	.	0	0	0	0	0	5
CRIPAK	285464	hgsc.bcm.edu	37	4	1389070	1389070	+	Silent	SNP	A	A	G	rs151096093	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRIPAK-90	NM_175918	exon1	c.A771G	p.G257G	ATGTGGAGTGCCC	.	43	14	6	0	A|0.981;G|0.019	8	2	6	0	0	1
GMEB1	10691	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	29040851	29040851	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GMEB1-90	NM_006582	exon10	c.G1288A	p.G430S	AGCCAGGGCTCCA	.	174	131	259	2	.	4	0	4	0	0	4
INPP5B	3633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	38397696	38397696	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	INPP5B-227	NM_005540	exon7	c.T421A	p.F141I	ACAGGAATTCAGG	.	20	9	29	0	.	0	0	0	0	0	5
NLRP3	114548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247599417	247599417	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRP3-674	NM_004895	exon6	c.C2644G	p.P882A	AAGAATCCACAGT	.	103	45	106	0	.	0	0	0	0	0	5
ABLIM1	3983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	116225545	116225545	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABLIM1-153	NM_002313	exon12	c.G1353A	p.T451T	CTGGCTCGTGGAC	.	137	55	176	0	.	0	0	0	0	0	5
LDHA	3939	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	18428729	18428729	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LDHA-650	NM_001165414	exon8	c.C987G	p.I329M	TGGAATCTCAGAC	.	159	10	186	0	.	606	580	25	1	0	3
FNBP4	23360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47772525	47772525	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FNBP4-91	NM_015308	exon6	c.G849T	p.T283T	AGAAATCGTTTTC	.	43	30	77	0	.	4	1	3	0	0	5
TAS2R50	259296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	11138943	11138943	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAS2R50-92	NM_176890	exon1	c.C517A	p.H173N	AAAGATGTACTGT	.	135	15	99	0	.	0	0	0	0	0	4
TAS2R31	259290	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	11183657	11183657	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_176885	exon1	c.A278G	p.H93R	CTGAAATGGCCGG	.	315	86	225	1	.	0	0	0	0	0	4
EEA1	8411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	93251238	93251238	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EEA1-229	NM_003566	exon4	c.A269G	p.Q90R	ACCTCTTGTCTGA	.	202	62	137	0	.	0	0	0	0	0	5
DAAM1	23002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	59835519	59835519	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DAAM1-227	NM_014992	exon25	c.T3179C	p.I1060T	AACGTATTACCAA	.	147	60	108	0	.	35	22	13	0	0	5
TMEM8A	58986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	426160	426160	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM8A-92	NM_021259	exon6	c.C1200T	p.L400L	GATGGTGAGGGAA	.	236	65	72	0	.	33	24	9	0	0	5
LAMA1	284217	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	7007263	7007263	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LAMA1-149	NM_005559	exon29	c.G4135A	p.G1379R	GGTACCCAGGGGC	.	58	25	58	1	.	0	0	0	0	0	4
MRI1	84245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13879744	13879744	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MRI1-91	NM_001031727	exon5	c.C831T	p.Y277Y	CTTCTACGTGGCT	.	176	38	140	0	.	9	6	3	0	0	5
ZNF264	9422	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57723887	57723887	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF264-92	NM_003417	exon4	c.C1422T	p.F474F	CCACTTCAGCATC	.	159	77	135	2	.	7	7	0	0	0	3
TMEM247	388946	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890	unknown	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145051	exon2	c.C382G	p.Q128E	CAGCGGCAGCGGC	.	249	24	171	0	G|1.000;|0.000	0	0	0	0	0	3
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179512177	179512177	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_001267550	exon214	c.G40072T	p.E13358X	TTTTCTCAGGCAC	.	90	29	131	0	.	0	0	0	0	0	5
SNTA1	6640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	31996515	31996515	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SNTA1-91	NM_003098	exon7	c.G1417A	p.G473S	TCTCGCCTTCAGC	.	243	102	235	0	.	0	0	0	0	0	5
LNX1	84708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	54439911	54439911	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LNX1-229	NM_001126328	exon2	c.T259A	p.C87S	TCTTGCAGTGCTG	.	236	90	243	0	.	0	0	0	0	0	5
LNX1	84708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	54440019	54440019	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LNX1-229	NM_001126328	exon2	c.C151T	p.P51S	CCAGGGGGTCCAG	.	183	83	206	0	.	0	0	0	0	0	5
MIER3	166968	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	56224609	56224609	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MIER3-90	NM_152622	exon10	c.906delT	p.L302fs	CTGTATAAGATGA	.	185	45	131	0	.	0	0	0	0	0	3
PCDHA3	56145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140182624	140182624	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHA3-98	NM_031497	exon1	c.G1842T	p.G614G	GCCTGGGACCGGC	.	368	80	50	0	.	0	0	0	0	0	5
ATP10B	23120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	160025960	160025960	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP10B-72	NM_025153	exon22	c.C3381T	p.L1127L	CCAGAAGAGCAGG	.	168	88	95	0	.	0	0	0	0	0	5
BEND3	57673	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	107391692	107391692	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BEND3-71	NM_001080450	exon5	c.G703A	p.E235K	CCATCTCAGTGGG	.	206	16	162	0	.	0	0	0	0	0	3
ECT2L	345930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	139189242	139189242	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ECT2L-22	NM_001195037	exon12	c.C1477A	p.Q493K	ACAGGGCAGTTTA	.	176	22	183	0	.	0	0	0	0	0	4
CUX1	1523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	101758537	101758537	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CUX1-160	NM_181500	exon8	c.G691A	p.E231K	TACGATGAAGAAA	.	153	24	120	0	.	26	24	2	0	0	5
KLF4	9314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	110251263	110251293	+	Frame_Shift_Del	DEL	GACGCGAACGTGGAGAAAGATGGGAGCAGCG	GACGCGAACGTGGAGAAAGATGGGAGCAGCG	-	novel	unknown	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	GACGCGAACGTGGAGAAAGATGGGAGCAGCG	GACGCGAACGTGGAGAAAGATGGGAGCAGCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLF4-651	NM_004235	exon2	c.44_74del	p.15_25del	GGGCCAGACGCGA	.	171	11	247	0	.	0	0	0	0	0	3
COX1	5742	bcgsc.ca	37	MT	6465	6465	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361624	exon1	c.G562A	p.V188I	TGATCCGTCCTAA	.	80	74	7	0	.	61730	3728	57933	39	30	1
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	14141	14141	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361567	exon1	c.T1805C	p.I602T	TCCTAATCACATA	.	85	76	11	0	.	8772	518	8250	1	3	2
SZT2	23334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43891735	43891735	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SZT2-144	NM_015284	exon21	c.G2956A	p.V986I	ACCTGCGTCCATG	.	117	50	111	0	.	1	0	1	0	0	5
L1TD1	54596	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	62675591	62675591	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	L1TD1-92	NM_001164835	exon5	c.C1145T	p.S382F	AGTTTTCCGAGCT	.	198	15	216	0	.	0	0	0	0	0	3
RSF1	51773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	77412599	77412599	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RSF1-93	NM_016578	exon6	c.A1675G	p.T559A	ACTCGGTGGAAGA	.	69	28	66	0	.	5	2	3	0	0	5
TMC2	117532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2573005	2573005	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMC2-93	NM_080751	exon8	c.G884A	p.R295Q	TGCCTCGGGCTGA	.	189	61	130	0	.	0	0	0	0	0	5
KLHL24	54800	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183388949	183388949	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLHL24-91	NM_017644	exon6	c.G1352T	p.S451I	TGACTAGCTGTGT	.	218	37	231	1	.	9	7	2	0	0	4
UBA6	55236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	68510476	68510476	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBA6-90	NM_018227	exon17	c.C1416A	p.G472G	TTCACAGCCTATG	.	183	23	194	0	.	2	1	1	0	0	4
MYO1G	64005	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	45009379	45009387	+	In_Frame_Del	DEL	GCCAGCAGA	GCCAGCAGA	-	novel	unknown	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	GCCAGCAGA	GCCAGCAGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO1G-137	NM_033054	exon11	c.1420_1428del	p.474_476del	GATGGTGCCAGCA	.	126	38	77	0	.	0	0	0	0	0	3
AUTS2	26053	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	70227999	70227999	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AUTS2-92	NM_001127231	exon7	c.A886G	p.K296E	GTGCTTAAAGACC	.	106	57	101	1	.	0	0	0	0	0	4
LRCH4	4034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100175783	100175783	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRCH4-136	NM_002319	exon7	c.A947T	p.E316V	CTTACCTCATTTC	.	124	12	111	0	.	13	6	7	0	0	4
PTPDC1	138639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	96846961	96846961	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPDC1-227	NM_152422	exon1	c.A149T	p.K50M	CCACGAAGCTGCT	.	124	18	57	0	.	0	0	0	0	0	4
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3240298	3240298	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MXRA5-136	NM_015419	exon5	c.G3428C	p.S1143T	TGAGTGCTCATGG	.	119	55	139	0	.	0	0	0	0	0	5
TBP	6908	bcgsc.ca	37	6	170871094	170871094	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBP-91	NM_003194	exon3	c.G270A	p.Q90Q	GCAGCAGCAGCAG	.	102	9	48	0	.	78	75	2	0	1	1
PTPRF	5792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44057031	44057031	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPRF-232	NM_002840	exon9	c.A1338G	p.G446G	GCGGGGATACCGC	.	72	18	46	0	.	0	0	0	0	0	5
JAK1	3716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	65321267	65321267	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	JAK1-3900	NM_002227	exon11	c.C1573T	p.H525Y	TGAGGTGGCTCAT	.	107	15	142	0	.	3	3	0	0	0	4
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186047340	186047340	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HMCN1-113	NM_031935	exon55	c.G8587A	p.V2863I	TATGATGTCCGTG	.	118	22	116	0	.	0	0	0	0	0	5
TMEM206	55248	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	212560297	212560297	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM206-153	NM_001198862	exon4	c.T462A	p.R154R	TTTCTCACGAAAG	.	167	11	154	0	.	0	0	0	0	0	3
ADSS	159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	244583531	244583531	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADSS-229	NM_001126	exon8	c.G731C	p.G244A	GGTGGTCCATGTA	.	50	14	96	0	.	1	1	0	0	0	5
LYZL1	84569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	29599974	29599975	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LYZL1-90	NM_032517	exon5	c.571_572del	p.191_191del	AAAGGCTGTGAGG	.	149	28	137	0	.	0	0	0	0	0	3
SIRT1	23411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	69651221	69651221	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SIRT1-226	NM_012238	exon4	c.C851T	p.A284V	GCCTTGCTGTAGA	.	119	40	129	0	.	0	0	0	0	0	5
CYP26C1	340665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	94821064	94821064	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CYP26C1-90	NM_183374	exon1	c.C44T	p.A15V	GGGCGGCGGGCAC	.	71	20	29	0	.	0	0	0	0	0	5
OR52E2	119678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5080032	5080032	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR52E2-71	NM_001005164	exon1	c.C826T	p.L276F	CTAGGAGTATATG	.	140	59	155	0	.	0	0	0	0	0	5
OR5D13	390142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55541619	55541619	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR5D13-71	NM_001001967	exon1	c.C706G	p.R236G	AGTGGGCGCCAGA	.	91	15	75	0	.	0	0	0	0	0	4
KRT75	9119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52828026	52828026	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRT75-90	NM_004693	exon1	c.G63A	p.S21S	GATGGCCGAGGTG	.	57	17	35	0	.	0	0	0	0	0	5
FAM101A	144347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124798764	124798764	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM101A-68	NM_181709	exon3	c.C101T	p.S34L	ACGCCTCGGAGAA	.	502	79	231	0	.	0	0	0	0	0	5
UBL3	5412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	30346294	30346294	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBL3-90	NM_007106	exon3	c.C178A	p.L60I	AAATAAGTCGTAG	.	29	12	71	0	.	0	0	0	0	0	5
CCDC169-SOHLH2	100526761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36748932	36748932	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001198910	exon12	c.C947T	p.A316V	ACTGAAGCCGCAT	.	68	17	109	0	.	0	0	0	0	0	5
TMEM63C	57156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77723002	77723002	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_020431	exon24	c.C2354T	p.A785V	GCTTTGCGAGGGA	.	142	36	132	0	.	0	0	0	0	0	5
MPI	4351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75185139	75185139	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MPI-92	NM_002435	exon4	c.A483G	p.L161L	CTTTCTAAAGAGT	.	103	33	128	0	.	0	0	0	0	0	5
AMDHD2	51005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2580311	2580311	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AMDHD2-155	NM_001145815	exon11	c.G1336C	p.E446Q	GTATGGGAGGCAC	.	144	31	62	0	.	13	13	0	0	0	5
CDH13	1012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	83378514	83378514	+	Silent	SNP	G	G	T	rs201452763	unknown;alternate_allele	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH13-67	NM_001220488	exon7	c.G825T	p.P275P	GGGGCCGGTGCCT	.	114	17	69	0	.	0	0	0	0	0	4
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10310241	10310241	+	Missense_Mutation	SNP	C	C	T	rs28932773	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYH8-101	NM_002472	exon18	c.G2021A	p.R674Q	ATACACCGTACGA	.	116	27	139	0	.	0	0	0	0	0	4
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9063150	9063150	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUC16-566	NM_024690	exon3	c.C24296G	p.S8099C	GATGTGGAGACAC	.	291	105	234	1	.	0	0	0	0	0	4
MKI67IP	84365	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	122493289	122493289	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MKI67IP-90	NM_032390	exon2	c.A143G	p.Y48C	CGCACATAGACTA	.	47	12	44	0	.	2	1	1	0	0	4
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152382545	152382545	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NEB-145	NM_001271208	exon151	c.A22193T	p.Q7398L	GAGCCCTGTGCCA	.	211	44	148	0	.	0	0	0	0	0	5
PID1	55022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	229890685	229890685	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PID1-94	NM_017933	exon4	c.G410A	p.R137Q	AATGGCCGGATTT	.	183	67	155	0	.	1	1	0	0	0	5
UGT1A5	54579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234621931	234621931	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UGT1A5-3	NM_019078	exon1	c.A294T	p.Q98H	CACTCAATCGTTC	.	153	27	119	0	.	0	0	0	0	0	5
PTPRA	5786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2945574	2945574	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPRA-227	NM_002836	exon9	c.C141G	p.A47A	AGAGGCCAAAACT	.	159	28	87	0	.	1	0	1	0	0	5
PIGU	128869	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	33225690	33225693	+	Frame_Shift_Del	DEL	CTTT	CTTT	-	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	CTTT	CTTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIGU-226	NM_080476	exon5	c.415_418del	p.139_140del	GGGCCACTTTCAA	.	159	35	90	0	.	0	0	0	0	0	3
ARFGEF2	10564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47605959	47605959	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARFGEF2-358	NM_006420	exon19	c.C2671T	p.R891W	CATGTCCGGCCAA	.	191	96	83	0	.	0	0	0	0	0	5
CTCFL	140690	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	56090878	56090878	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTCFL-292	NM_001269044	exon5	c.A1072G	p.K358E	GGCGCTTCAATTT	.	79	9	43	0	.	0	0	0	0	0	3
FAM212A	389119	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49842192	49842192	+	Silent	SNP	C	C	T	rs146996587	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_203370	exon2	c.C636T	p.D212D	GGGTGACGGAGGT	.	155	56	209	1	C|0.999;T|0.000	2	2	0	0	0	4
SI	6476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	164748583	164748583	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SI-104	NM_001041	exon25	c.G2809C	p.E937Q	CATTTTCTGAGAA	.	147	29	121	0	.	0	0	0	0	0	5
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	114244940	114244940	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANK2-583	NM_001127493	exon28	c.G2863T	p.D955Y	GAACGTGACAACA	.	161	27	147	0	.	0	0	0	0	0	5
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	13913969	13913969	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH5-182	NM_001369	exon11	c.C1419T	p.F473F	AGTTTCGAATTTT	.	81	6	85	0	.	0	0	0	0	0	3
GRM6	2916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178419079	178419079	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRM6-588	NM_000843	exon2	c.C510T	p.P170P	GATCTGGGGTATC	.	132	79	48	0	.	0	0	0	0	0	5
CANX	821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179149880	179149880	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CANX-90	NM_001746	exon11	c.A1258G	p.S420G	CCTTTTAGTGCTA	.	137	28	50	0	.	13	13	0	0	0	5
LAMA2	3908	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	129381036	129381036	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LAMA2-162	NM_000426	exon3	c.C391A	p.Q131K	GATTTACAGCAGG	.	229	28	267	1	.	0	0	0	0	0	3
FBXL13	222235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	102553550	102553550	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXL13-226	NM_001111038	exon11	c.C991T	p.L331F	CAGAGAGGTCCAG	.	138	13	142	0	.	1	1	0	0	0	4
TMEM176A	55365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150500884	150500884	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM176A-92	NM_018487	exon5	c.G519T	p.R173S	CAGAAGGCTACAC	.	77	19	71	0	.	0	0	0	0	0	5
CDC37L1	55664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	4685143	4685143	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDC37L1-90	NM_017913	exon2	c.G399A	p.K133K	TAGCAAGGATGTT	.	181	66	181	0	.	3	1	2	0	0	5
PTPRD	5789	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	8485824	8485824	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPRD-912	NM_002839	exon28	c.C2993A	p.T998K	TTGCTCGTATGAG	.	185	23	159	1	.	0	0	0	0	0	3
IARS	3376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	94985663	94985663	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IARS-92	NM_013417	exon32	c.A3518G	p.Y1173C	TTGATATACTGAC	.	152	67	131	0	.	11	7	4	0	0	5
ASB11	140456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	15332559	15332559	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASB11-289	NM_001012428	exon1	c.G50C	p.R17P	CTGATACGTTCTG	.	35	15	51	0	.	0	0	0	0	0	4
DMD	1756	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	32407770	32407770	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DMD-265	NM_004006	exon32	c.A4366C	p.M1456L	ACTTCATGGAGAC	.	38	15	46	0	.	0	0	0	0	0	4
MCF2	4168	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	138713564	138713564	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MCF2-227	NM_001171876	exon6	c.T458C	p.I153T	CTGAAGATGATCC	.	144	8	110	0	.	0	0	0	0	0	3
EVI5L	115704	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	7915003	7915004	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EVI5L-91	NM_001159944	exon5	c.748_749insT	p.L250fs	TACATGCTGCAGG	.	88	15	70	0	.	0	0	0	0	0	3
ND4	0	broad.mit.edu;bcgsc.ca	37	MT	11909	11909	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361381	exon1	c.A1150G	p.T384A	CTAGTAACCACGT	.	133	105	18	0	.	37237	8644	28540	24	29	2
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	12859	12859	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361567	exon1	c.A523G	p.N175D	CTATACAACCGTA	.	189	155	39	0	.	4164	620	3542	1	1	2
GOT2	2806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	58742148	58742148	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GOT2-91	NM_002080	exon10	c.G1220A	p.R407H	GAGATGCGGCCAT	.	94	28	107	0	.	255	168	87	0	0	5
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	72993517	72993517	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFHX3-72	NM_006885	exon2	c.C528T	p.G176G	CCCCGCGCCAGGG	.	86	30	98	0	.	3	1	2	0	0	5
THRA	7067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38240130	38240130	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	THRA-186	NM_001190918	exon5	c.T265C	p.Y89H	CCCACCTATTCCT	.	85	24	145	0	.	60	30	30	0	0	5
EMR1	2015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6937659	6937659	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EMR1-526	NM_001974	exon20	c.G2655A	p.T885T	CAAGACGGTGAGA	.	104	29	100	0	.	0	0	0	0	0	5
MYO9B	4650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17296757	17296757	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO9B-67	NM_001130065	exon18	c.C2524T	p.L842L	GAGGCACTGGGGA	.	132	25	116	0	.	60	41	19	0	0	5
SLC1A5	6510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47280654	47280654	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC1A5-90	NM_005628	exon6	c.C1067T	p.T356M	GGCAGCGTGGCGG	.	121	25	111	0	.	0	0	0	0	0	5
SLC8A2	6543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	47935685	47935685	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC8A2-94	NM_015063	exon9	c.G2128A	p.E710K	CGTCCTCCTCCTC	.	95	14	87	0	.	9	5	4	0	0	4
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTNNB1-24361	NM_001098209	exon3	c.T133C	p.S45P	GCTCCTTCTCTGA	.	155	60	159	1	.	734	472	261	0	1	5
FAM208A	23272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	56667845	56667845	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001112736	exon18	c.G2974A	p.D992N	ACACGTCATCCTC	.	66	22	112	0	.	25	15	10	0	0	5
ACPP	55	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132061444	132061444	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACPP-91	NM_001099	exon6	c.C604T	p.L202F	CAGGACCTTTTTG	.	40	10	35	0	.	24	18	6	0	0	5
ARRDC3	57561	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	90671379	90671379	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARRDC3-136	NM_020801	exon4	c.T562G	p.S188A	GGCCTGAGGTACA	.	77	21	57	1	.	76	54	22	0	0	4
PCDHGA2	56113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140719726	140719726	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHGA2-71	NM_018915	exon1	c.G1188T	p.K396N	AGAAAAGTCAGTA	.	117	18	86	0	.	15	11	4	0	0	4
AKR1B15	441282	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	134252962	134252962	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AKR1B15-23	NM_001080538	exon4	c.A203G	p.Y68C	CAGAATATCGCCA	.	146	42	171	1	.	0	0	0	0	0	3
PTN	5764	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	136938212	136938212	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTN-516	NM_002825	exon3	c.C288T	p.G96G	CTTACCGCCAAAT	.	88	33	76	1	.	0	0	0	0	0	4
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	55541829	55541829	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RP1-102	NM_006269	exon4	c.C5387T	p.T1796M	GCCCAACGATGGA	.	225	50	173	0	.	0	0	0	0	0	5
TMEM245	23731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	111812906	111812906	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_032012	exon13	c.C1921A	p.L641I	TCAAGAGTGTAGT	.	244	13	457	0	.	40	40	0	0	0	3
ATP1B4	23439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	119504588	119504588	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP1B4-131	NM_001142447	exon3	c.A347G	p.Y116C	TCATTTACTTCTT	.	97	32	109	0	.	0	0	0	0	0	5
LPPR2	0	broad.mit.edu	37	19	11472132	11472132	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LPPR2-153	NM_022737	exon6	c.G631T	p.A211S	GATGCGGCCCTCT	.	150	14	13	0	.	20	18	2	0	0	1
COX2	5743	broad.mit.edu;bcgsc.ca	37	MT	8013	8013	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361739	exon1	c.T428C	p.V143A	GAGTAGTACTCCC	.	23	5	34	0	.	23181	19384	3725	25	47	2
ART5	116969	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	3661315	3661315	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ART5-91	NM_053017	exon2	c.G344A	p.R115Q	CCCGTCCGCACGG	.	141	8	143	0	.	0	0	0	0	0	3
NDRG2	57447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21488972	21488972	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NDRG2-154	NM_201537	exon7	c.G439C	p.A147P	CTCCAGCTCCAAC	.	34	22	36	0	.	2	0	2	0	0	5
FBLN2	2199	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	13612958	13612958	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBLN2-91	NM_001998	exon2	c.T1103C	p.V368A	CTCTCGTCCCAAC	.	110	8	33	0	.	0	0	0	0	0	3
WWP1	11059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87437479	87437479	+	Silent	SNP	T	T	G	novel	unknown	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WWP1-659	NM_007013	exon10	c.T1089G	p.G363G	TCATGGTAGAACC	.	56	19	32	0	.	0	0	0	0	0	5
HDAC6	10013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48676475	48676475	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HDAC6-230	NM_006044	exon21	c.C1953A	p.H651Q	TGTCCACCACGGT	.	492	204	321	0	.	1	1	0	0	0	5
G6PD	2539	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153761190	153761190	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	G6PD-135	NM_000402	exon9	c.G1108A	p.V370I	GGACGACGGCTGC	.	473	163	271	1	.	11	11	0	0	0	4
MMP8	4317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102586132	102586132	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MMP8-229	NM_002424	exon7	c.C939T	p.V313V	CATTTCGACTCTT	.	68	8	68	0	.	0	0	0	0	0	4
ZNRF4	148066	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	5456615	5456615	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNRF4-135	NM_181710	exon1	c.C1113T	p.D371D	CAGGGACGAGGAC	.	64	4	53	0	.	0	0	0	0	0	3
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	61463189	61463189	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP34-579	NM_014709	exon56	c.T6938G	p.L2313R	GTCTCTAGGACAA	.	58	23	37	0	.	2	2	0	0	0	5
BCL2L1	598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	30309831	30309831	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BCL2L1-1084	NM_138578	exon2	c.C191T	p.A64V	TTCACCGCGGGGC	.	95	38	70	0	.	3	1	2	0	0	5
OPA1	4976	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	193380667	193380667	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OPA1-68	NM_130837	exon26	c.G2577T	p.E859D	TGAGGAGCACCCA	.	162	82	163	1	.	4	0	4	0	0	3
FAM170A	340069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	118970068	118970068	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM170A-91	NM_182761	exon3	c.G625A	p.V209I	CCCACCGTTGAGG	.	115	44	92	0	.	0	0	0	0	0	5
FAM26F	441168	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	6	116783563	116783563	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM26F-68	NM_001010919	exon2	c.A471A	p.G157G	CAACCAGGCCAAG	.	24	15	14	0	.	1	1	0	0	0	3
GET4	51608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	930643	930643	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GET4-90	NM_015949	exon5	c.A545G	p.Y182C	TGGAGTATTCCAC	.	254	71	221	0	.	116	67	49	0	0	5
CRIPAK	285464	hgsc.bcm.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRIPAK-90	NM_175918	exon1	c.T675C	p.D225D	TGCCGATGCGGAG	.	100	8	19	0	C|1.000;|0.000	16	10	6	0	0	1
TNRC18	84629	hgsc.bcm.edu	37	7	5352665	5352665	+	Silent	SNP	T	T	G	novel	unknown	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNRC18-46	NM_001080495	exon27	c.A7857C	p.S2619S	GGAGGATGAGGAG	.	12	7	7	0	.	7	0	5	2	0	1
COX3	5742	broad.mit.edu	37	MT	9591	9591	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000362079	exon1	c.G385A	p.V129I	CTAGAAGTCCCAC	.	53	4	27	0	.	223583	223195	95	113	180	1
ND4	0	broad.mit.edu;bcgsc.ca	37	MT	11351	11351	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361381	exon1	c.G592A	p.A198T	TGACTAGCTTACA	.	89	6	65	0	.	38358	34758	3563	22	15	2
CYTB	0	broad.mit.edu;bcgsc.ca	37	MT	15189	15189	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361789	exon1	c.A443G	p.N148S	TTACAAACTTACT	.	124	13	60	0	.	16574	14974	1578	19	3	2
MORN1	79906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	2316501	2316501	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MORN1-92	NM_024848	exon6	c.C453T	p.N151N	GTCACCGTTCCTG	.	69	29	32	0	.	0	0	0	0	0	5
RPL22	6146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	6246838	6246840	+	In_Frame_Del	DEL	TTC	TTC	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	TTC	TTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RPL22-650	NM_000983	exon4	c.279_281del	p.93_94del	AGATTATTCTTCT	.	297	191	323	0	.	0	0	0	0	0	3
ZBTB40	9923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22852723	22852723	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZBTB40-91	NM_001083621	exon19	c.C3554T	p.P1185L	TGGCCCCGACAGA	.	136	125	115	1	.	0	0	0	0	0	4
HPCAL4	51440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	40148354	40148354	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HPCAL4-90	NM_016257	exon4	c.G430A	p.G144R	TGAGCCCGTCCTG	.	235	217	210	0	.	0	0	0	0	0	5
CYP4A22	284541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47610627	47610627	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CYP4A22-139	NM_001010969	exon9	c.C1207G	p.R403G	GATGGGCGCTCCT	.	194	173	206	1	.	0	0	0	0	0	5
ZNF326	284695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	90487883	90487883	+	Silent	SNP	G	G	A	rs146247512	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF326-91	NM_182976	exon11	c.G1380A	p.A460A	GAAGGCGCGATAT	.	170	152	197	0	G|0.999;A|0.001	24	0	24	0	0	5
DPYD	1806	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	97771791	97771791	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DPYD-278	NM_000110	exon17	c.2121delT	p.F707fs	CTTGGCAAAAAAA	.	87	70	72	0	.	0	0	0	0	0	3
KCNC4	3749	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110766300	110766300	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNC4-154	NM_001039574	exon2	c.G1393A	p.A465T	ACCATCGCCATGC	.	165	42	155	1	.	0	0	0	0	0	3
IGSF3	3321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	117131615	117131615	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGSF3-92	NM_001542	exon9	c.C2201T	p.A734V	AGCACCGCAAAGT	.	236	218	221	1	.	4	0	4	0	0	5
BOLA1	51027	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	149871945	149871945	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BOLA1-69	NM_016074	exon2	c.C333T	p.P111P	GACCCCCGCCCAG	.	117	105	64	1	.	15	0	15	0	0	4
SPRR2G	6706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153122484	153122484	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPRR2G-68	NM_001014291	exon2	c.C103A	p.P35T	GGTAAGGCTCAGG	.	76	68	73	0	.	0	0	0	0	0	5
PBXIP1	57326	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	154917581	154917583	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PBXIP1-153	NM_020524	exon11	c.2113_2115del	p.705_705del	CTTGTCCTTCTTC	.	90	62	81	0	.	0	0	0	0	0	3
IQGAP3	128239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156498355	156498355	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IQGAP3-96	NM_178229	exon36	c.C4619T	p.A1540V	AGCTGAGCAGCAG	.	60	51	64	0	.	1	0	1	0	0	5
KLHDC9	126823	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	161068381	161068382	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLHDC9-22	NM_152366	exon1	c.56_57del	p.19_19del	GGAGGCCAGTGGC	.	131	113	72	0	.	0	0	0	0	0	3
TNR	7143	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	175372700	175372700	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNR-324	NM_003285	exon4	c.G552A	p.E184E	ACAGGACTCAAAG	.	190	162	161	2	.	0	0	0	0	0	3
TDRD5	163589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179621206	179621206	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TDRD5-94	NM_001199091	exon13	c.C2034T	p.Y678Y	TTTATACACGACA	.	143	127	135	0	.	1	0	1	0	0	5
F13B	2165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197031011	197031011	+	Silent	SNP	G	G	A	rs142562955	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	F13B-92	NM_001994	exon3	c.C354T	p.C118C	TGAAGCGCAACCA	.	108	94	89	0	G|1.000;A|0.000	0	0	0	0	0	5
PCNXL2	80003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	233135059	233135059	+	Missense_Mutation	SNP	G	G	A	rs201746355	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCNXL2-91	NM_014801	exon31	c.C5395T	p.R1799C	GATTGCGGTTGCG	.	98	35	113	0	.	5	2	3	0	0	5
IDI1	3422	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	1088637	1088637	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IDI1-90	NM_004508	exon4	c.G472T	p.A158S	CAAGGGCGTCACT	.	196	32	94	1	.	443	366	76	0	1	4
FBXO18	84893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5948345	5948345	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXO18-228	NM_032807	exon4	c.A656G	p.D219G	CAGAGGACAGTAC	.	464	99	225	0	.	15	11	4	0	0	5
SFMBT2	57713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	7269870	7269870	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SFMBT2-141	NM_001029880	exon10	c.G1150C	p.D384H	GATAATCTGCCCA	.	108	59	54	0	.	0	0	0	0	0	5
TAF3	83860	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	10	8051255	8051255	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAF3-69	NM_031923	exon5	c.G2530A	p.V844M	GCCCCCGTGCGCA	.	75	37	17	0	.	15	5	10	0	0	3
ZNF25	219749	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	38241708	38241710	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF25-154	NM_145011	exon6	c.716_718del	p.239_240del	TCACATAGAAGAA	.	195	74	117	0	.	0	0	0	0	0	3
RASSF4	83937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	45484790	45484790	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RASSF4-290	NM_032023	exon7	c.G600A	p.L200L	AACCCTGCAGGTG	.	299	148	162	0	.	3	2	1	0	0	5
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	56423995	56423995	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH15-193	NM_001142763	exon2	c.T28G	p.C10G	CTAAACATGTCCA	.	108	51	44	0	.	0	0	0	0	0	5
EGR2	1959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	64573625	64573625	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EGR2-92	NM_000399	exon2	c.T773C	p.V258A	GGGGGCACCCGCA	.	146	62	108	0	.	0	0	0	0	0	5
UNC5B	219699	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73046620	73046620	+	Missense_Mutation	SNP	G	G	A	rs143653939	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UNC5B-228	NM_001244889	exon5	c.G727A	p.V243I	GTCATCGTCTACG	.	274	126	160	1	G|0.999;A|0.001	0	0	0	0	0	4
GBF1	8729	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104136514	104136514	+	Silent	SNP	C	C	T	rs139000128	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GBF1-91	NM_001199378	exon32	c.C4245T	p.C1415C	GCTCTGCGTCAAG	.	40	6	30	1	C|1.000;T|0.000	57	47	10	0	0	3
C10orf118	55088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	115904312	115904312	+	Missense_Mutation	SNP	C	C	T	rs201374071	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C10orf118-92	NM_018017	exon6	c.G1165A	p.V389I	TGATGACGTGAGA	.	238	35	120	0	C|0.999;T|0.000	3	3	0	0	0	4
PNLIPRP3	119548	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118220558	118220558	+	Missense_Mutation	SNP	G	G	A	rs114674677	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PNLIPRP3-91	NM_001011709	exon6	c.G646A	p.V216I	GTTGACGTTATTC	.	182	80	106	0	G|0.999;A|0.001	1	1	0	0	0	4
FAM45A	404636	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	120879946	120879946	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM45A-91	NM_207009	exon5	c.C575T	p.A192V	TAGAAGCGGTCCA	.	517	102	273	2	.	19	15	4	0	0	3
DNHD1	144132	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6550209	6550209	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNHD1-24	NM_144666	exon12	c.G2205A	p.M735I	AGACATGAGAGGT	.	149	128	142	2	.	0	0	0	0	0	3
RNF141	50862	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	10540661	10540663	+	In_Frame_Del	DEL	CTC	CTC	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CTC	CTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RNF141-226	NM_016422	exon5	c.460_462del	p.154_154del	ACAACACTCCTCC	.	44	35	34	0	.	0	0	0	0	0	3
HPS5	11234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18303703	18303703	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HPS5-133	NM_181507	exon22	c.G3123A	p.T1041T	TGGCCTCGTGCTC	.	72	66	85	0	.	14	0	14	0	0	5
CCS	9973	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66361154	66361154	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCS-90	NM_005125	exon2	c.C81T	p.D27D	TGTGGACGCGGTG	.	98	89	99	1	.	29	1	28	0	0	4
CADM1	23705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	115111112	115111112	+	Silent	SNP	G	G	A	rs138296059	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CADM1-92	NM_014333	exon2	c.C153T	p.D51D	TGTCACGTCTTTC	.	86	34	96	0	G|1.000;A|0.000	14	8	6	0	0	5
MLL	4297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	118344494	118344495	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLL-1255	NM_001197104	exon3	c.2620_2621del	p.874_874del	AAGAGTAGAGAGA	.	46	38	47	0	.	0	0	0	0	0	3
CCDC77	84318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	539878	539878	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC77-91	NM_032358	exon7	c.A559C	p.S187R	GAGCAGAGTGAAT	.	169	77	94	0	.	8	3	5	0	0	5
EFCAB4B	84766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	3736625	3736625	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EFCAB4B-92	NM_001144958	exon17	c.C1909T	p.R637W	ACCGCCGGACCGA	.	198	35	91	0	.	0	0	0	0	0	5
VWF	7450	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6219643	6219643	+	Silent	SNP	G	G	A	rs202062122	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VWF-163	NM_000552	exon5	c.C429T	p.S143S	GTTGCCGCTGCCA	.	315	163	148	1	G|0.999;A|0.000	15	15	0	0	0	4
PEX5	5830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7356126	7356126	+	Silent	SNP	T	T	G	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PEX5-91	NM_001131023	exon10	c.T990G	p.L330L	TGACCTTACGTCA	.	245	138	123	0	.	12	8	4	0	0	5
MAGOHB	55110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10766108	10766108	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAGOHB-153	NM_018048	exon1	c.C24T	p.Y8Y	GCGCAGGTAGAAA	.	260	107	89	0	.	19	13	6	0	0	5
SLC2A13	114134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	40422218	40422218	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC2A13-515	NM_052885	exon3	c.A810T	p.G270G	AGTCTGTCCTTTC	.	62	9	42	0	.	4	4	0	0	0	4
CACNB3	784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49218962	49218962	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNB3-90	NM_000725	exon7	c.C509T	p.P170L	TTCCCCCATATGA	.	333	59	161	0	.	6	4	2	0	0	5
LETMD1	25875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51453177	51453177	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LETMD1-90	NM_001243689	exon9	c.T1085C	p.V362A	ACGTGGTCCTGCT	.	406	187	175	0	.	59	32	27	0	0	5
HOXC4	3221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54448765	54448765	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HOXC4-91	NM_014620	exon4	c.C571A	p.H191N	ATCGCCCACTCGC	.	430	196	200	0	.	8	5	3	0	0	5
LRP1	4035	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57579562	57579562	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRP1-596	NM_002332	exon41	c.G6712A	p.A2238T	GTCATCGCCCTGG	.	243	106	119	2	.	2	2	0	0	0	3
CCDC53	51019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	102437938	102437938	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_016053	exon4	c.A269G	p.N90S	GTGACATTTAAAG	.	224	96	85	0	.	105	65	40	0	0	5
ALDH1L2	160428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	105446693	105446693	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALDH1L2-91	NM_001034173	exon11	c.A1304T	p.N435I	ATTTCATTGACCT	.	196	68	108	0	.	0	0	0	0	0	5
CUX2	23316	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	111760254	111760254	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CUX2-140	NM_015267	exon18	c.C2796T	p.S932S	CGTGAGCGACATG	.	318	175	58	1	.	0	0	0	0	0	4
SETD1B	23067	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	122242658	122242658	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SETD1B-86	NM_015048	exon1	c.15delC	p.H5fs	CAGTCACCCCCCC	.	164	70	87	0	.	0	0	0	0	0	3
NUFIP1	26747	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	45563471	45563471	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NUFIP1-90	NM_012345	exon1	c.G101A	p.R34Q	CTGTCCCGCGGCG	.	128	111	90	1	.	1	0	1	0	0	3
SLITRK1	114798	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	84454943	84454943	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLITRK1-94	NM_052910	exon1	c.G700T	p.A234S	TCAGGGCATTCTT	.	107	86	117	1	.	0	0	0	0	0	4
SLC15A1	6564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99339879	99339879	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC15A1-91	NM_005073	exon21	c.G1783A	p.E595K	CCACTTCGCCACA	.	118	19	116	0	.	0	0	0	0	0	4
CCDC168	643677	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103391148	103391148	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001146197	exon4	c.G11899T	p.E3967X	AAATCTCAACTTC	.	37	32	40	0	.	0	0	0	0	0	4
MYH6	4624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	23859651	23859651	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYH6-94	NM_002471	exon26	c.G3347A	p.R1116H	TCGATGCGTGCCT	.	103	39	23	0	.	0	0	0	0	0	4
LRRC16B	90668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24538366	24538366	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC16B-139	NM_138360	exon39	c.C4003T	p.R1335W	GGCCGGCGGACTG	.	241	106	128	0	.	0	0	0	0	0	5
NYNRIN	57523	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	24885257	24885258	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NYNRIN-3	NM_025081	exon9	c.4302_4303del	p.1434_1435del	CCGGGGCTCTCTG	.	124	74	68	0	.	0	0	0	0	0	3
FBXO34	55030	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	55818555	55818555	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXO34-228	NM_017943	exon2	c.1447delT	p.F483fs	ATGTTGTTTTTTT	.	197	78	106	0	.	0	0	0	0	0	3
SYNE2	23224	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	64596621	64596621	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SYNE2-164	NM_182914	exon75	c.14139+2T>C	.	TAGAGGTATGCCT	.	230	95	91	2	.	0	0	0	0	0	3
GPR68	8111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	91701094	91701094	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR68-91	NM_001177676	exon2	c.C301A	p.L101M	CGTACAGGAGGAT	.	405	199	186	0	.	0	0	0	0	0	5
GSC	145258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95235475	95235475	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GSC-90	NM_173849	exon2	c.G435A	p.S145S	GGTGCGCGACAGC	.	343	83	114	0	.	0	0	0	0	0	5
BDKRB2	624	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	96706741	96706741	+	Missense_Mutation	SNP	G	G	A	rs200693201	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BDKRB2-662	NM_000623	exon3	c.G76A	p.A26T	TTCAGCGCCGACA	.	148	68	86	1	.	0	0	0	0	0	3
ADSSL1	122622	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105201420	105201420	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADSSL1-515	NM_199165	exon2	c.C385T	p.P129S	CTGCTGCCCAGCG	.	459	89	201	1	.	5	3	2	0	0	4
APBA2	321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	29393975	29393975	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	APBA2-90	NM_005503	exon9	c.C1512T	p.F504F	TGTGTTCGAGTCG	.	308	132	132	0	.	0	0	0	0	0	5
LPCAT4	254531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34651423	34651423	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LPCAT4-90	NM_153613	exon14	c.C1480T	p.R494X	TGCCTCGAGAGGT	.	93	48	41	0	.	29	22	7	0	0	5
SPRED1	161742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	38643332	38643332	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPRED1-1085	NM_152594	exon7	c.A802G	p.K268E	ATGTGGAAAAATG	.	171	29	83	0	.	11	7	4	0	0	5
RASGRP1	10125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	38786797	38786797	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RASGRP1-697	NM_005739	exon16	c.G2045A	p.G682D	TCACTGCCAATCC	.	142	68	78	0	.	2	0	2	0	0	5
WDR72	256764	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	53908071	53908071	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDR72-92	NM_182758	exon15	c.2332delA	p.M778fs	GCTGCATTTTTTT	.	130	23	69	0	.	0	0	0	0	0	3
SLTM	79811	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	59182525	59182526	+	Frame_Shift_Del	DEL	TC	TC	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLTM-91	NM_024755	exon15	c.2033_2034del	p.678_678del	TTCCATTCTCTCT	.	136	27	83	0	.	0	0	0	0	0	3
NR2E3	10002	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	15	72105935	72105935	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NR2E3-22	NM_016346	exon7	c.C953T	p.T318M	CCCCCACGGAGTT	.	131	46	31	0	.	0	0	0	0	0	3
PML	5371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74315308	74315308	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PML-1083	NM_033250	exon3	c.C742T	p.Q248X	GCGCTGCAGGAGC	.	133	57	37	0	.	2	2	0	0	0	5
KIAA1199	57214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81218052	81218052	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1199-93	NM_018689	exon18	c.C2376T	p.H792H	GGACCACGGGGCC	.	170	159	64	0	.	0	0	0	0	0	5
KIF7	374654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	90192528	90192528	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF7-523	NM_198525	exon4	c.C600T	p.N200N	CGCCGCGTTGCCC	.	152	80	33	0	.	0	0	0	0	0	4
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	18864971	18864974	+	Frame_Shift_Del	DEL	GAGT	GAGT	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	GAGT	GAGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMG1-1160	NM_015092	exon31	c.4699_4702del	p.1567_1568del	CTATTAGAGTGAG	.	222	87	123	0	.	0	0	0	0	0	3
VWA3A	146177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	22128481	22128481	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VWA3A-1	NM_173615	exon11	c.A974T	p.Y325F	ACTGCTACAGCCC	.	357	161	151	0	.	0	0	0	0	0	5
APOBR	55911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	28509449	28509449	+	Silent	SNP	C	C	T	rs186642005	by1000genomes	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	APOBR-90	NM_018690	exon3	c.C3003T	p.R1001R	GAGTCGCGTGCAC	.	34	15	13	0	C|0.999;T|0.000	1	1	0	0	0	3
ATP2A1	487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28909569	28909569	+	Missense_Mutation	SNP	G	G	A	rs200092983	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP2A1-93	NM_004320	exon14	c.G1561A	p.V521I	GAGGGCGTCATCG	.	120	50	71	0	G|0.999;A|0.001	2	2	0	0	0	5
BCL7C	9274	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	30904237	30904238	+	Frame_Shift_Del	DEL	TC	TC	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BCL7C-227	NM_004765	exon3	c.203_204del	p.68_68del	ACGGGATCTCTCT	.	47	22	24	0	.	0	0	0	0	0	3
WDR59	79726	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	74937919	74937919	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDR59-92	NM_030581	exon18	c.C1792T	p.R598C	ATAAACGAAGGTT	.	73	60	100	1	.	6	1	5	0	0	4
SMTNL2	342527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	4497117	4497119	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMTNL2-90	NM_001114974	exon4	c.731_733del	p.244_245del	CCACAGAGAAGAA	.	69	16	79	0	.	0	0	0	0	0	3
ACAP1	9744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7251702	7251702	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACAP1-153	NM_014716	exon17	c.G1586A	p.R529Q	GAGGGCGAAGAGG	.	88	77	72	0	.	0	0	0	0	0	5
NLGN2	57555	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7318830	7318830	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLGN2-90	NM_020795	exon6	c.C1038T	p.R346R	CCCCAGCTACCAC	.	224	12	160	0	.	0	0	0	0	0	3
SHISA6	388336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11461177	11461177	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SHISA6-67	NM_207386	exon6	c.G1212A	p.P404P	GAAGCCGTTGCCA	.	128	113	107	0	.	0	0	0	0	0	5
MYOCD	93649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	12649333	12649333	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYOCD-93	NM_001146312	exon9	c.A1069G	p.T357A	GGACAAACTGGTG	.	98	94	75	0	.	0	0	0	0	0	5
SLFN12	55106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33747391	33747391	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLFN12-91	NM_018042	exon3	c.G1049A	p.S350N	TATGAACTGGAAA	.	73	59	87	0	.	1	0	1	0	0	5
C17orf66	256957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	34191866	34191866	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C17orf66-155	NM_152781	exon4	c.A349T	p.I117F	TTTTGATGTGGGT	.	241	215	233	0	.	0	0	0	0	0	5
KRTAP4-6	81871	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39296288	39296288	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_030976	exon1	c.G452A	p.R151H	GAGGGGCGGCAGC	.	197	81	69	2	.	0	0	0	0	0	3
KRTAP16-1	100505753	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	39463994	39463994	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001146182	exon1	c.C1512T	p.A504A	TGCTGCGGCCTCA	.	34	29	33	0	.	0	0	0	0	0	3
MPP3	4356	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	41879215	41879215	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MPP3-91	NM_001932	exon20	c.G1612A	p.A538T	AGGCGGCAGAAGC	.	50	44	46	1	.	0	0	0	0	0	3
HOXB13	10481	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	46805884	46805884	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HOXB13-514	NM_006361	exon1	c.72delG	p.G24fs	ATTCCGCCCCCCT	.	133	111	122	0	.	0	0	0	0	0	3
PCTP	58488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	53851112	53851112	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCTP-91	NM_021213	exon4	c.C367G	p.L123V	CGAGACCTGGACA	.	158	143	137	0	.	4	0	4	0	0	5
ANKFN1	162282	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	54543810	54543810	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKFN1-136	NM_153228	exon14	c.G1660A	p.E554K	GAGGTGGAGATGC	.	191	10	168	0	.	0	0	0	0	0	3
PRKCA	5578	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	64731690	64731690	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRKCA-1404	NM_002737	exon10	c.C1140T	p.D380D	TGATGACGTGGAG	.	249	228	276	2	.	4	0	4	0	0	3
RPTOR	57521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78933974	78933974	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RPTOR-847	NM_020761	exon30	c.G3574A	p.V1192I	ATCCGCGTCTACG	.	211	44	203	0	.	13	9	4	0	0	5
RAB40B	10966	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80616520	80616520	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAB40B-227	NM_006822	exon5	c.A412G	p.T138A	GCTCCGTGGGCAC	.	80	56	63	1	.	6	0	6	0	0	4
ABHD3	171586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	19244151	19244151	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABHD3-90	NM_138340	exon5	c.A596C	p.E199A	ACTGTCTCCAAGT	.	79	68	89	0	.	2	0	2	0	0	5
SLC39A6	25800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	33706547	33706547	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC39A6-92	NM_012319	exon2	c.C424T	p.R142X	CTTTTCGCTTATT	.	234	203	221	1	.	3	0	3	0	0	5
FHOD3	80206	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	34289245	34289245	+	Silent	SNP	C	C	T	rs141915411	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FHOD3-139	NM_025135	exon15	c.C1899T	p.N633N	GCAGAACGAGGGG	.	226	196	209	2	C|0.999;T|0.000	13	0	13	0	0	3
PIAS2	9063	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	44470593	44470593	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIAS2-662	NM_173206	exon2	c.449delA	p.N150fs	GGCAGATTTTTTA	.	277	241	260	0	.	0	0	0	0	0	3
ADNP2	22850	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	77893731	77893732	+	Frame_Shift_Del	DEL	TA	TA	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	TA	TA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADNP2-140	NM_014913	exon4	c.435_436del	p.145_146del	TGAAACTAAATCA	.	103	94	110	0	.	0	0	0	0	0	3
CHAF1A	10036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4409751	4409751	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHAF1A-92	NM_005483	exon3	c.C955T	p.R319C	CCCCTCCGCAGAG	.	117	49	79	0	.	0	0	0	0	0	5
FUT6	2528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	5831871	5831871	+	Silent	SNP	C	C	T	rs141754965	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FUT6-90	NM_000150	exon3	c.G708A	p.T236T	GGACAGCGTCTCC	.	663	282	325	1	C|1.000;T|0.000	0	0	0	0	0	4
VAV1	7409	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6822269	6822269	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VAV1-1276	NM_005428	exon5	c.G487A	p.V163M	GACTGCGTGGAGA	.	411	54	148	1	.	0	0	0	0	0	4
FBN3	84467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8206917	8206917	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBN3-100	NM_032447	exon6	c.C646T	p.R216C	AGGCACGGCCCAC	.	163	50	99	0	.	0	0	0	0	0	5
MYO1F	4542	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	8587291	8587291	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO1F-93	NM_012335	exon27	c.G3190A	p.V1064M	CGTTCACGTTGAA	.	259	13	91	0	.	4	4	0	0	0	3
ICAM1	3383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10394443	10394443	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ICAM1-91	NM_000201	exon3	c.C618A	p.P206P	GGCCCCCTACCAG	.	100	39	57	0	.	2	2	0	0	0	5
CD97	976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14515325	14515325	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CD97-570	NM_078481	exon13	c.G1580A	p.C527Y	GCCAATGCAGCCA	.	261	54	101	0	.	1	1	0	0	0	5
EMR2	30817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14854448	14854448	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EMR2-524	NM_013447	exon19	c.T2332C	p.Y778H	GGCAGTACACCAG	.	454	87	245	0	.	0	0	0	0	0	5
AKAP8	10270	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	15484604	15484604	+	Missense_Mutation	SNP	G	G	A	rs140271912	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AKAP8-290	NM_005858	exon4	c.C364T	p.R122W	TCTCCCGGTCCTG	.	78	35	37	0	G|1.000;A|0.000	0	0	0	0	0	4
TMEM161A	54929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19243492	19243492	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM161A-154	NM_001256766	exon4	c.G260T	p.C87F	AGGGGGCAGGTCT	.	119	20	59	0	.	152	122	30	0	0	5
SLC7A10	56301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	33706703	33706703	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC7A10-91	NM_019849	exon2	c.G328A	p.V110I	CTGTGACGTAGGC	.	158	36	85	0	.	0	0	0	0	0	5
COX6B1	1340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36145482	36145482	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COX6B1-226	NM_001863	exon3	c.G116A	p.R39H	TCCACCGCTGTCA	.	301	57	167	0	.	0	0	0	0	0	5
ZNF529	57711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37038306	37038306	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF529-67	NM_001145649	exon6	c.A1154C	p.Q385P	ATTCTCTGATGAC	.	102	57	49	0	.	1	1	0	0	0	5
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	38939333	38939333	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RYR1-100	NM_001042723	exon11	c.1002delC	p.G334fs	CATGGGCCCCCCT	.	344	136	166	0	.	0	0	0	0	0	3
RYR1	6261	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39018334	39018334	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RYR1-100	NM_000540	exon73	c.C10734T	p.G3578G	CCGGGGCGTCCCG	.	374	195	161	1	.	0	0	0	0	0	4
FBXO27	126433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39521937	39521937	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXO27-227	NM_178820	exon3	c.C388T	p.Q130X	CGTGTTGCACCAT	.	269	50	142	0	.	0	0	0	0	0	5
PRX	57716	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40900691	40900691	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRX-92	NM_181882	exon7	c.G3568A	p.V1190M	GGGTCACCTGGGG	.	225	107	87	1	.	12	6	6	0	0	4
LIPE	3991	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	42914911	42914913	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LIPE-154	NM_005357	exon2	c.965_967del	p.322_323del	GGCTCGAGAAGAA	.	82	70	51	0	.	0	0	0	0	0	3
NKPD1	284353	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	45655516	45655516	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NKPD1-68	NM_198478	exon4	c.G2179A	p.A727T	AGTCGGCGCCCAG	.	165	27	34	0	.	0	0	0	0	0	4
ERCC1	2067	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	45922382	45922382	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ERCC1-659	NM_001983	exon5	c.C499T	p.R167W	GGACCCGCAAGGC	.	73	25	40	1	.	81	59	22	0	0	3
GRIN2D	2906	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	19	48918195	48918195	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRIN2D-156	NM_000836	exon6	c.C1487T	p.A496V	GGCTGGCGCATAC	.	335	136	160	0	.	0	0	0	0	0	3
MED25	81857	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50333113	50333113	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MED25-91	NM_030973	exon6	c.596delC	p.A199fs	AGGCAGCCCCCCC	.	240	29	122	0	.	0	0	0	0	0	3
ZNF160	90338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53577421	53577421	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF160-90	NM_001102603	exon6	c.G243A	p.T81T	TTCCGGCGTTCTT	.	175	83	85	0	.	0	0	0	0	0	5
GRHL1	29841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	10105471	10105471	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRHL1-92	NM_198182	exon8	c.C1071T	p.N357N	GTATAACGCCATT	.	73	67	74	0	.	0	0	0	0	0	5
LOXL3	84695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74779681	74779681	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LOXL3-226	NM_032603	exon2	c.G81A	p.P27P	AGGGGACGGAGAC	.	175	16	142	0	.	0	0	0	0	0	4
CAPG	822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	85628351	85628351	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CAPG-204	NM_001256140	exon5	c.C453T	p.T151T	CCGCTCGGTGGCA	.	183	161	195	0	.	5	5	0	0	0	5
MAP3K19	80122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	135738728	135738728	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_025052	exon9	c.A3583G	p.M1195V	TTGGCATGAGCAT	.	56	51	48	0	.	0	0	0	0	0	5
SLC40A1	30061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	190430180	190430180	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC40A1-91	NM_014585	exon6	c.C660T	p.Y220Y	CAGAACGTACTCC	.	130	106	114	0	.	0	0	0	0	0	5
ORMDL1	94101	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	190640321	190640321	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ORMDL1-68	NM_016467	exon4	c.G296A	p.R99Q	AACTTCCGTGAAG	.	69	20	64	1	.	37	26	11	0	0	4
NOP56	10528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2637510	2637510	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOP56-92	NM_006392	exon10	c.A1250T	p.N417I	GAAAGAATCTGGA	.	304	138	128	0	.	101	56	45	0	0	5
VSX1	30813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	25052585	25052585	+	Missense_Mutation	SNP	G	G	T	rs149938697	by1000genomes;alternate_allele	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VSX1-90	NM_001256272	exon5	c.C878A	p.P293Q	CACCACGGGGTCT	.	166	86	79	0	G|0.998;A|0.002	0	0	0	0	0	5
NELFCD	51497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57568155	57568155	+	Silent	SNP	G	G	A	rs141996345	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_198976	exon11	c.G1386A	p.A462A	CCTGGCGTTGCTG	.	639	152	315	0	G|0.999;A|0.001	6	6	0	0	0	5
ZNF831	128611	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	57769225	57769225	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF831-126	NM_178457	exon1	c.G3151A	p.A1051T	AGGGAGGCTACCT	.	139	67	73	1	.	0	0	0	0	0	3
PHACTR3	116154	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	58342325	58342325	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHACTR3-93	NM_080672	exon5	c.C626A	p.A209D	CCTTAGCTGGGGC	.	357	23	170	0	.	0	0	0	0	0	3
CABLES2	81928	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60966048	60966048	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CABLES2-91	NM_031215	exon10	c.G1416T	p.R472S	GAGGCGCCTGTAA	.	239	125	112	1	.	1	0	1	0	0	4
COL20A1	57642	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	61944185	61944185	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL20A1-90	NM_020882	exon16	c.C1975T	p.P659S	GAGCTGCCAGGGG	.	276	121	137	1	.	0	0	0	0	0	3
BACH1	571	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	30701923	30701925	+	In_Frame_Del	DEL	GAA	GAA	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	GAA	GAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BACH1-92	NM_206866	exon4	c.1685_1687del	p.562_563del	ATATTCGAAGAAG	.	232	107	100	0	.	0	0	0	0	0	3
TIAM1	7074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	32638636	32638636	+	Missense_Mutation	SNP	G	G	A	rs202148756	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TIAM1-724	NM_003253	exon5	c.C653T	p.A218V	GGACTCGCCCGCG	.	145	72	70	0	G|0.999;A|0.001	0	0	0	0	0	5
TTC28	23331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	28501523	28501523	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145418	exon8	c.G3051A	p.L1017L	GTACTGCAGGGCT	.	185	174	172	1	.	1	1	0	0	0	4
CHEK2	11200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29130427	29130427	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHEK2-1515	NM_145862	exon2	c.C283T	p.R95X	ATAATCGAGCCCA	.	49	47	61	0	.	0	0	0	0	0	5
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	29445345	29445345	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNRF3-69	NM_001206998	exon8	c.1176delC	p.N392fs	CGGCAACCCCGTC	.	165	146	117	0	.	0	0	0	0	0	3
CRELD2	79174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50319196	50319196	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRELD2-90	NM_001135101	exon10	c.G1147A	p.A383T	CCGCCGGCAGAGG	.	94	88	68	0	.	0	0	0	0	0	5
PLXNB2	23654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	50722344	50722344	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLXNB2-211	NM_012401	exon14	c.C2339T	p.A780V	CACCACGCACACC	.	88	75	34	0	.	24	0	24	0	0	4
PLXNB2	23654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	50722601	50722601	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLXNB2-211	NM_012401	exon13	c.C2223T	p.Y741Y	CTTGACGTAGAGG	.	71	65	48	0	.	32	1	31	0	0	4
SETD5	55209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9516182	9516182	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SETD5-70	NM_001080517	exon21	c.A3547T	p.K1183X	ATCCCCAAGGTCC	.	105	86	70	0	.	31	4	27	0	0	5
STAC	6769	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	36570404	36570406	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STAC-94	NM_003149	exon10	c.1037_1039del	p.346_347del	AAAATGAGAAGAT	.	80	75	85	0	.	0	0	0	0	0	3
MLH1	4292	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	37042447	37042449	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AAG	AAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLH1-2559	NM_000249	exon3	c.209_211del	p.70_71del	AACAGAAAGAAGA	.	61	51	65	0	.	0	0	0	0	0	3
XIRP1	165904	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	39230192	39230192	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	XIRP1-158	NM_001198621	exon2	c.G745A	p.A249T	GGATGGCGCCCTC	.	57	45	47	0	.	0	0	0	0	0	4
PDZRN3	23024	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	73432786	73432788	+	In_Frame_Del	DEL	CTC	CTC	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CTC	CTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDZRN3-232	NM_015009	exon10	c.2929_2931del	p.977_977del	CTTCCTCTCCTCC	.	94	82	85	0	.	0	0	0	0	0	3
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	130159651	130159651	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_153264	exon35	c.6469delT	p.F2157fs	AAGCCATTTTTAT	.	77	33	54	0	.	0	0	0	0	0	3
FXR1	8087	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	180666228	180666228	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FXR1-153	NM_001013438	exon5	c.364delA	p.K122fs	ACTGTCAAAAAAA	.	75	60	54	0	.	0	0	0	0	0	3
EPHB3	2049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184299402	184299402	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPHB3-1455	NM_004443	exon16	c.C2989A	p.Q997K	CCTGTGCAGGTCT	.	124	107	130	0	.	2	1	1	0	0	5
FAM43A	131583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	194407766	194407766	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM43A-90	NM_153690	exon1	c.A211G	p.T71A	ACTTACACCGTGC	.	351	310	279	1	.	4	4	0	0	0	5
NELFA	7469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1991593	1991593	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_005663	exon3	c.G419A	p.G140D	CACTCACCCACTG	.	237	107	109	0	.	0	0	0	0	0	5
STIM2	57620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	27000929	27000929	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STIM2-91	NM_001169118	exon5	c.G585A	p.Q195Q	ACTTCAGCTCAAG	.	144	62	59	0	.	9	7	2	0	0	5
PRKG2	5593	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	82126123	82126123	+	Missense_Mutation	SNP	G	G	A	rs187350442	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRKG2-524	NM_006259	exon1	c.C79T	p.R27W	TGTTCCGCAGAGC	.	295	139	137	2	G|0.999;A|0.001	0	0	0	0	0	3
AP1AR	55435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	113189441	113189441	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AP1AR-90	NM_018569	exon10	c.A785G	p.N262S	GGGAAAATGATTT	.	213	92	133	0	.	49	32	16	0	1	5
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	114276759	114276759	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANK2-583	NM_001148	exon38	c.G6985A	p.G2329S	TGCACAGGCAGCT	.	154	70	82	0	.	0	0	0	0	0	5
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	126369791	126369791	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAT4-108	NM_024582	exon9	c.7620delA	p.V2540fs	GCATGTAAAAGAT	.	259	115	105	0	.	0	0	0	0	0	3
ZNF330	27309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	142143548	142143548	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF330-90	NM_014487	exon2	c.C23T	p.A8V	CTGGTGCGAGGAA	.	333	160	164	0	.	52	23	29	0	0	5
ACSL1	2180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	185684335	185684335	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACSL1-92	NM_001995	exon16	c.G1507A	p.E503K	CGCCCTCGGCAGC	.	72	66	72	0	.	13	0	13	0	0	5
AGXT2	64902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	34998917	34998917	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AGXT2-94	NM_031900	exon14	c.G1452A	p.A484A	TGAGGGCGCAATG	.	100	40	65	0	.	0	0	0	0	0	5
NUP155	9631	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	37348627	37348628	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NUP155-205	NM_153485	exon9	c.974_975del	p.325_325del	AGCAGCAGAGACA	.	683	313	384	0	.	0	0	0	0	0	3
ANXA2R	389289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	43039623	43039623	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001014279	exon1	c.G526A	p.A176T	AGAACGCGGCAAA	.	219	119	112	0	.	5	3	1	1	0	5
SPATA9	83890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	94994526	94994526	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPATA9-90	NM_031952	exon5	c.G566T	p.C189F	TTTCTACAATTTT	.	62	29	44	0	.	1	0	1	0	0	5
MCC	4163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	112720886	112720886	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MCC-69	NM_001085377	exon2	c.G194A	p.R65H	AGCTGGCGACAGA	.	260	108	144	0	.	0	0	0	0	0	5
AQPEP	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	115335468	115335468	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_173800	exon7	c.1384delT	p.F462fs	GAGATCTTTTTTT	.	200	92	102	0	.	0	0	0	0	0	3
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127728872	127728872	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBN2-146	NM_001999	exon10	c.C1421T	p.A474V	ACACCGGCTCCCC	.	126	61	61	0	.	0	0	0	0	0	5
TENM2	57451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	167674716	167674716	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001122679	exon27	c.G6745A	p.G2249R	AGACTCGGGGATG	.	190	36	102	0	.	0	0	0	0	0	5
ERGIC1	57222	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	172315747	172315747	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ERGIC1-93	NM_001031711	exon2	c.G66A	p.T22T	GCCAACGTACACC	.	346	133	165	1	.	62	34	28	0	0	4
CLTB	1212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	175824972	175824972	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLTB-90	NM_001834	exon3	c.G311A	p.R104H	CACTTGCGGATGC	.	239	39	122	0	.	386	315	71	0	0	5
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176687121	176687121	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NSD1-188	NM_022455	exon14	c.C5098T	p.R1700X	GGCTGCCGAAATC	.	205	28	97	0	.	4	3	1	0	0	5
RASGEF1C	255426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179564923	179564923	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RASGEF1C-228	NM_175062	exon2	c.G130T	p.E44X	GTGTTTCCAGGGA	.	388	66	170	0	.	0	0	0	0	0	5
EHMT2	10919	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	31857309	31857311	+	In_Frame_Del	DEL	TCT	TCT	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	TCT	TCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EHMT2-91	NM_025256	exon8	c.933_935del	p.311_312del	TCTTCCTCTTCTT	.	52	10	74	0	.	0	0	0	0	0	3
BTNL2	56244	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32370751	32370751	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BTNL2-90	NM_019602	exon3	c.G670A	p.V224I	TGAGGACGGGGTT	.	182	159	178	2	.	0	0	0	0	0	3
B3GALT4	8705	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33245779	33245779	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	B3GALT4-68	NM_003782	exon1	c.C583T	p.R195C	GGGGGCCGTTGGG	.	125	111	101	1	.	15	2	13	0	0	4
DAXX	1616	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	33288228	33288232	+	Frame_Shift_Del	DEL	TCTTT	TCTTT	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	TCTTT	TCTTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DAXX-731	NM_001141970	exon4	c.1212_1216del	p.404_406del	CTCTTCTCTTTTT	.	48	41	62	0	.	0	0	0	0	0	3
KLHL31	401265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	53519456	53519456	+	Silent	SNP	C	C	A	rs114605120	unknown;alternate_allele	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLHL31-23	NM_001003760	exon2	c.G615T	p.S205S	CTGATCCGATTCT	.	56	48	71	0	C|0.999;T|0.001	0	0	0	0	0	5
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	152751308	152751308	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SYNE1-607	NM_033071	exon36	c.C4748T	p.A1583V	GGAACAGCAAGTT	.	119	109	137	0	.	0	0	0	0	0	5
ZPBP	11055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	50129273	50129273	+	Missense_Mutation	SNP	G	G	A	rs200921057	unknown;alternate_allele	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZPBP-90	NM_007009	exon2	c.C160T	p.R54C	TCAAGCGAAAAGC	.	202	86	122	0	G|0.999;T|0.001	0	0	0	0	0	5
GTF2IRD1	9569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	73944069	73944069	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GTF2IRD1-94	NM_001199207	exon9	c.G1192A	p.A398T	GCGGAAGCCCTGG	.	112	24	50	0	.	0	0	0	0	0	4
PPP1R3A	5506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	113519565	113519565	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPP1R3A-832	NM_002711	exon4	c.G1582T	p.E528X	GTTTTTCATTAAC	.	61	10	53	0	.	0	0	0	0	0	4
CPA1	1357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	130020366	130020366	+	Missense_Mutation	SNP	G	G	A	rs145988366	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CPA1-91	NM_001868	exon1	c.G5A	p.R2Q	GCATGCGGGGGTT	.	53	34	31	0	G|1.000;A|0.000	0	0	0	0	0	5
CPA1	1357	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	130021521	130021521	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CPA1-91	NM_001868	exon3	c.A198G	p.R66R	CGTCCGAGTGCCC	.	288	127	99	1	.	0	0	0	0	0	4
EXOC4	60412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	132959896	132959896	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EXOC4-159	NM_021807	exon2	c.C246T	p.R82R	AGAGCGCATCACT	.	362	148	159	0	.	9	5	4	0	0	5
PARP12	64761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139726084	139726084	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PARP12-525	NM_022750	exon11	c.G1693A	p.G565S	TGGTGCCGTGGAA	.	167	90	86	0	.	32	18	14	0	0	5
MYBL1	4603	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	67511292	67511294	+	In_Frame_Del	DEL	TCT	TCT	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	TCT	TCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYBL1-395	NM_001080416	exon4	c.282_284del	p.94_95del	CTCTGATCTTCTT	.	46	34	38	0	.	0	0	0	0	0	3
UBR5	51366	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	103297940	103297940	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBR5-761	NM_015902	exon39	c.C5285A	p.A1762D	GCTGCAGCACTTG	.	137	123	103	1	.	1	0	1	0	0	3
TYRP1	7306	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	12704553	12704553	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TYRP1-226	NM_000550	exon6	c.A1109G	p.D370G	AGTATGACCCTGC	.	46	45	46	1	.	0	0	0	0	0	4
C9orf41	138199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	77613553	77613553	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C9orf41-92	NM_152420	exon5	c.A871G	p.M291V	CTGTCATAGAAAA	.	240	108	138	0	.	7	5	2	0	0	5
SECISBP2	79048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	91949587	91949587	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SECISBP2-93	NM_024077	exon7	c.C1031T	p.A344V	CTGAAGCTTTATC	.	117	43	81	0	.	37	13	24	0	0	5
CDK5RAP2	55755	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	123290085	123290085	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDK5RAP2-229	NM_018249	exon10	c.998delA	p.K333fs	CATACCTTTTTTT	.	53	26	28	0	.	0	0	0	0	0	3
NR5A1	2516	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	127253373	127253375	+	In_Frame_Del	DEL	GAT	GAT	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	GAT	GAT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NR5A1-186	NM_004959	exon6	c.1123_1125del	p.375_375del	GAAGAGGATGATG	.	240	106	98	0	.	0	0	0	0	0	3
GAPVD1	26130	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	128069806	128069806	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GAPVD1-93	NM_015635	exon5	c.T1231C	p.Y411H	ATAACCTACAGTC	.	82	6	59	0	.	4	4	0	0	0	3
FCN2	2220	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137777089	137777089	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FCN2-153	NM_004108	exon5	c.G306A	p.P102P	AGGCCCGCGTACC	.	181	98	94	1	.	0	0	0	0	0	4
PPP1R26	9858	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	138377451	138377451	+	Silent	SNP	C	C	T	rs138779417	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_014811	exon4	c.C1095T	p.D365D	CAGCGACGATGGC	.	331	159	171	1	C|1.000;T|0.000	10	8	2	0	0	3
KCNT1	57582	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	138662903	138662903	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNT1-137	NM_020822	exon18	c.C1970T	p.P657L	AGGGTCCGGCCCG	.	258	139	94	1	.	1	0	1	0	0	3
KCNT1	57582	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	138669186	138669186	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNT1-137	NM_020822	exon21	c.C2352T	p.G784G	CCAGGGCTGCAAG	.	464	42	230	0	.	0	0	0	0	0	3
GRIN1	2902	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	140055846	140055846	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRIN1-187	NM_001185091	exon11	c.G1508A	p.G503D	CAGATGGCAAGTT	.	674	100	269	1	.	0	0	0	0	0	3
TMEM203	94107	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	140099815	140099815	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM203-22	NM_053045	exon1	c.G52T	p.E18X	AGATCTCGAAGGT	.	604	184	172	0	.	85	63	22	0	0	4
SMC1A	8243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	53438821	53438823	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMC1A-232	NM_006306	exon7	c.1142_1144del	p.381_382del	TGCTGGCTTCTTC	.	123	109	63	0	.	0	0	0	0	0	3
RPA4	29935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	96139817	96139817	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RPA4-227	NM_013347	exon1	c.A508G	p.K170E	CTGGATAAAGCCC	.	179	69	83	0	.	0	0	0	0	0	5
HNRNPH2	3188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100667308	100667308	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HNRNPH2-130	NM_001032393	exon2	c.G332A	p.G111D	ACGATGGCTTCGT	.	357	328	184	0	.	94	6	88	0	0	5
CAPN6	827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	110497633	110497633	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CAPN6-195	NM_014289	exon4	c.166-2A>G	.	ATGTCCTATGAAT	.	142	80	62	0	.	0	0	0	0	0	4
KIAA1210	57481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	118215302	118215302	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1210-67	NM_020721	exon14	c.T5120A	p.I1707N	TGCGTGATTTCTG	.	81	78	34	0	.	0	0	0	0	0	5
GPC4	2239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	132437297	132437297	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPC4-226	NM_001448	exon8	c.C1365T	p.S455S	TGGTTTGCTGGTG	.	140	126	71	0	.	22	0	22	0	0	5
MAGEC1	9947	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	140994548	140994548	+	Missense_Mutation	SNP	A	A	G	rs58117541	bycluster;alternate_allele	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAGEC1-133	NM_005462	exon4	c.A1358G	p.Y453C	TCTCCTACACTTT	.	87	82	39	0	A|0.500;C|0.500	0	0	0	0	0	4
HCFC1	3054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153225825	153225825	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HCFC1-132	NM_005334	exon7	c.G945T	p.E315D	GTTGTCCTCCAGT	.	169	154	78	0	.	8	0	8	0	0	5
DKC1	1736	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	154004462	154004462	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DKC1-227	NM_001363	exon14	c.C1339T	p.R447W	TCTCAGCGGAAGC	.	131	49	80	1	.	1	0	1	0	0	4
MIA3	375056	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	222803533	222803534	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MIA3-98	NM_198551	exon4	c.2971_2972insA	p.E991fs	ATAGCAGAAAAAA	.	119	96	141	0	.	0	0	0	0	0	3
TRIM21	6737	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	4409704	4409705	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRIM21-229	NM_003141	exon4	c.561_562insA	p.N187fs	CAGGAAGTTTTTT	.	32	21	50	0	.	0	0	0	0	0	3
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	108383875	108383876	+	Frame_Shift_Ins	INS	-	-	TG	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EXPH5-95	NM_015065	exon6	c.2359_2360insCA	p.D787fs	ATTTATCTGTGTG	.	75	57	73	0	.	0	0	0	0	0	3
DDX47	51202	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	12974637	12974638	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DDX47-226	NM_016355	exon4	c.419_420insA	p.A140fs	CCCTTGCAAAAAA	.	64	23	34	0	.	0	0	0	0	0	3
MPHOSPH9	10198	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	123645709	123645710	+	Nonsense_Mutation	INS	-	-	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MPHOSPH9-514	NM_022782	exon18	c.2899_2900insT	p.D967_E968delinsX	GTTCATCAAAAAA	.	67	32	35	0	.	0	0	0	0	0	3
KIF7	374654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	90190208	90190209	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF7-523	NM_198525	exon7	c.1641_1642insG	p.G547fs	CCGCGGGCCCCCC	.	156	63	29	0	.	0	0	0	0	0	3
LAT	27040	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	28996226	28996227	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LAT-44	NM_001014989	exon1	c.44_45insG	p.L15fs	CCGTCTTGGGGGG	.	58	24	35	0	.	0	0	0	0	0	3
ZNF486	90649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	20308051	20308052	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF486-47	NM_052852	exon4	c.532_533insA	p.E178fs	CATACTGAAAAAA	.	98	44	87	0	.	0	0	0	0	0	3
RTN2	6253	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	45996512	45996513	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RTN2-93	NM_005619	exon5	c.939_940insC	p.P313fs	AGGAGTAGGGGGG	.	82	39	44	0	.	0	0	0	0	0	3
C1D	10438	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	68270087	68270088	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C1D-186	NM_001190263	exon6	c.360_361insA	p.N120fs	GAGGGCATTTTTT	.	104	35	111	0	.	0	0	0	0	0	3
TOP1	7150	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	39713140	39713141	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TOP1-1148	NM_003286	exon8	c.546_547insA	p.D182fs	TAAAGATAAAAAA	.	76	24	68	0	.	0	0	0	0	0	3
HERC6	55008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	89311864	89311865	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HERC6-658	NM_017912	exon4	c.497_498insC	p.F166fs	AGGAGTTCCCCTC	.	165	76	80	0	.	0	0	0	0	0	3
CWC27	10283	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	64100133	64100134	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CWC27-90	NM_005869	exon10	c.858_859insA	p.A286fs	AATTGCCAAAAAA	.	68	33	28	0	.	0	0	0	0	0	3
PHACTR2	9749	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	144086413	144086414	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHACTR2-92	NM_001100164	exon6	c.710_711insA	p.S237fs	CTCATTCAAAAAA	.	25	20	24	0	.	0	0	0	0	0	3
TMEM130	222865	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	98452922	98452923	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM130-91	NM_152913	exon5	c.744_745insT	p.L248fs	GGGCCCCAACACT	.	256	41	145	0	.	0	0	0	0	0	3
DOCK1	1793	ucsc.edu;bcgsc.ca	37	10	128830513	128830513	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DOCK1-698	NM_001380	exon18	c.G1778A	p.G593E	GCCTTGGGAGCTG	.	620	277	286	2	.	5	0	5	0	0	2
SIK3	23387	ucsc.edu;bcgsc.ca	37	11	116734454	116734454	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SIK3-919	NM_025164	exon15	c.C1715T	p.A572V	ATGCTCGCAGCCC	.	214	192	196	2	.	5	0	4	1	0	2
INO80	54617	broad.mit.edu	37	15	41337219	41337219	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	INO80-72	NM_017553	exon24	c.C2790A	p.R930R	CCAGGAGCGTAGC	.	97	5	46	1	.	14	12	2	0	0	1
LMNB2	84823	ucsc.edu;bcgsc.ca	37	19	2438488	2438488	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LMNB2-290	NM_032737	exon3	c.G443A	p.R148H	TTCACACGGCCCT	.	806	359	320	2	.	3	1	2	0	0	2
LPHN1	22859	hgsc.bcm.edu;bcgsc.ca	37	19	14272167	14272167	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LPHN1-523	NM_001008701	exon7	c.G1482A	p.Q494Q	GCCCTGCTGGGTG	.	142	64	34	0	.	4	1	3	0	0	2
ARRDC2	27106	broad.mit.edu	37	19	18119374	18119374	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARRDC2-91	NM_015683	exon1	c.C255T	p.R85R	CCACCGCGCCACG	.	30	4	16	0	.	12	10	2	0	0	1
NPHP1	4867	broad.mit.edu;bcgsc.ca	37	2	110962528	110962528	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NPHP1-92	NM_207181	exon1	c.G18A	p.Q6Q	ATCTCGCTGTCGT	.	183	62	89	2	.	8	5	3	0	0	2
PMS2	5395	broad.mit.edu;bcgsc.ca	37	7	6026767	6026767	+	Silent	SNP	G	G	A	rs111673299	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PMS2-1083	NM_000535	exon11	c.C1629T	p.D543D	AGAGTCGTCAGTT	.	161	74	69	2	A|1.000;|0.000	3	0	3	0	0	2
GOLGA1	2800	ucsc.edu;bcgsc.ca	37	9	127674275	127674275	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GOLGA1-91	NM_002077	exon11	c.G874A	p.V292I	TGATAACGTCTTC	.	214	117	106	2	.	11	7	4	0	0	2
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152280081	152280081	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FLG-106	NM_002016	exon3	c.C7281A	p.A2427A	TCCATGGGCGGAC	.	481	116	309	0	.	0	0	0	0	0	4
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228526051	228526051	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OBSCN-403	NM_001271223	exon79	c.G19933A	p.D6645N	TCTGAAGACGAAT	.	55	9	31	0	.	2	2	0	0	0	4
NRG3	10718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	84745227	84745227	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NRG3-522	NM_001010848	exon9	c.G1957A	p.A653T	GAACTGGCCAGCG	.	96	43	71	0	.	2	2	0	0	0	5
PIK3AP1	118788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	98386618	98386618	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIK3AP1-519	NM_152309	exon10	c.C1516G	p.L506V	GACCAAGATGGCA	.	187	87	135	0	.	0	0	0	0	0	5
GPAM	57678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	113924340	113924340	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPAM-92	NM_001244949	exon13	c.C1250T	p.P417L	GACACCGGTTTCT	.	100	48	53	0	.	0	0	0	0	0	5
PNLIP	5406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118318731	118318731	+	Silent	SNP	T	T	G	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PNLIP-92	NM_000936	exon10	c.T996G	p.P332P	ATATCCTGGGAAA	.	134	62	96	0	.	0	0	0	0	0	5
ENO4	387712	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	10	118633606	118633606	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ENO4-69	NM_001242699	exon10	c.T1235C	p.V412A	ATGAAGTGATCAT	.	125	51	109	0	.	0	0	0	0	0	3
BRSK2	9024	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1471882	1471882	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BRSK2-333	NM_001256630	exon14	c.G1491A	p.T497T	CCACACGCCAAAG	.	80	67	10	0	.	0	0	0	0	0	4
SLCO1B7	338821	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	21196449	21196449	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001009562	exon6	c.T768C	p.D256D	TAATGATAAAAGG	.	27	11	20	0	.	0	0	0	0	0	4
GALNT4	8693	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	89916603	89916603	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_003774	exon1	c.G1724A	p.S575N	TCAAAACTCCAAA	.	104	25	80	2	.	0	0	0	0	0	3
C12orf65	91574	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123738436	123738436	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C12orf65-90	NM_001194995	exon2	c.G215T	p.G72V	CAGGGGGCCAGGC	.	139	53	140	1	.	29	15	14	0	0	4
PCDH20	64881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	61986775	61986775	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH20-581	NM_022843	exon2	c.A1457G	p.E486G	AAATATTCATTAT	.	177	91	154	0	.	0	0	0	0	0	5
KLF5	688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	73636282	73636282	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLF5-155	NM_001730	exon2	c.C545T	p.P182L	CGGCCCCGACCCA	.	77	38	61	0	.	0	0	0	0	0	5
INSM2	84684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	36004341	36004341	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	INSM2-226	NM_032594	exon1	c.G883C	p.E295Q	TGCCCTGAGTGCG	.	92	25	23	0	.	0	0	0	0	0	5
ELMSAN1	91748	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	74191989	74191989	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_194278	exon9	c.2560delC	p.L854fs	GCACCAGGAAGAA	.	70	57	111	0	.	0	0	0	0	0	3
ATXN2L	11273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28844676	28844676	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATXN2L-92	NM_145714	exon14	c.1955+1G>T	.	TGCTGAGTGAGTG	.	89	43	79	0	.	9	0	9	0	0	5
OR1D5	8386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2966182	2966182	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_014566	exon1	c.C720A	p.T240T	GGCACAGGTAGAG	.	684	268	615	0	.	0	0	0	0	0	5
MYO1F	4542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8595175	8595175	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO1F-93	NM_012335	exon21	c.G2233T	p.G745W	CCAGCCCCAGGTA	.	167	38	144	0	.	0	0	0	0	0	5
OR7A10	390892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14951843	14951843	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR7A10-68	NM_001005190	exon1	c.C847A	p.P283T	GCATGGGGGTGAC	.	140	66	92	0	.	0	0	0	0	0	5
CATSPERG	57828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38845375	38845375	+	Silent	SNP	C	C	T	rs114967522	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CATSPERG-92	NM_021185	exon9	c.C1023T	p.S341S	GGCCAGCGAGTGC	.	182	82	119	0	C|0.999;T|0.001	0	0	0	0	0	5
TRPM4	54795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	49699903	49699903	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPM4-91	NM_017636	exon17	c.A2417G	p.Q806R	ATTTCCAGCCGGC	.	55	26	24	0	.	2	2	0	0	0	4
SHANK1	50944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51172454	51172454	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SHANK1-153	NM_016148	exon22	c.C2763A	p.P921P	TGGCGGGGGAATG	.	40	18	26	0	.	0	0	0	0	0	5
DPRX	503834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54140161	54140161	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DPRX-90	NM_001012728	exon3	c.C495G	p.P165P	CTACCCCATTTTG	.	166	71	130	0	.	0	0	0	0	0	5
ZNF606	80095	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58500063	58500063	+	Silent	SNP	G	G	A	rs182994172	unknown;alternate_allele	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF606-92	NM_025027	exon5	c.C204T	p.A68A	GTCCACGGCCACG	.	90	43	67	1	G|0.999;T|0.001	0	0	0	0	0	4
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84771405	84771405	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH6-69	NM_001370	exon5	c.C711T	p.S237S	TATTAGCCAAAGG	.	146	58	116	0	.	0	0	0	0	0	5
IFT52	51098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	42233641	42233641	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IFT52-92	NM_016004	exon6	c.414-1G>T	.	CTTCAAGGGAAAT	.	69	31	48	0	.	0	0	0	0	0	4
SYCP2	10388	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	58450354	58450354	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SYCP2-525	NM_014258	exon33	c.C3321A	p.G1107G	TGGACTGCCAGAT	.	69	6	52	0	.	0	0	0	0	0	3
RGS19	10287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62705725	62705725	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RGS19-227	NM_005873	exon5	c.G234A	p.T78T	ACTTGGCGTGGCA	.	131	64	26	0	.	0	0	0	0	0	5
U2AF1	7307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	44524486	44524486	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	U2AF1-90	NM_001025203	exon2	c.T71C	p.I24T	GCTCCAATTTTGA	.	125	44	137	0	.	75	56	19	0	0	5
TTC28	23331	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	28503713	28503713	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145418	exon7	c.T2120C	p.L707P	TTATTCAGAGACT	.	69	59	89	1	.	0	0	0	0	0	4
SEC14L4	284904	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	30887672	30887672	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEC14L4-91	NM_001161368	exon11	c.G969C	p.K323N	CCCCATCTTGGTC	.	75	6	104	0	.	0	0	0	0	0	3
FAM3D	131177	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	58631299	58631299	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM3D-90	NM_138805	exon5	c.C200T	p.A67V	TTAAACGCAAAGT	.	102	59	129	2	.	0	0	0	0	0	3
ADAMTS9	56999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	64536626	64536626	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS9-230	NM_182920	exon31	c.G4811A	p.R1604H	CTTTCACGGTCCA	.	178	101	191	0	.	0	0	0	0	0	5
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	195508392	195508392	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUC4-90	NM_018406	exon2	c.A10059T	p.V3353V	TGTGGATACTGAG	.	691	112	624	1	.	0	0	0	0	0	4
WHSC1	7468	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1905977	1905977	+	Missense_Mutation	SNP	G	G	A	rs192103195	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WHSC1-664	NM_133335	exon3	c.G632A	p.G211E	ACACTGGAAGAGA	.	177	68	179	1	G|0.999;A|0.000	1	0	1	0	0	4
TRPC3	7222	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122853648	122853648	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPC3-92	NM_001130698	exon2	c.G765T	p.K255N	GGCACCCTTCATC	.	262	87	218	0	.	0	0	0	0	0	5
PCDH18	54510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	138452025	138452025	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH18-185	NM_019035	exon1	c.A1218G	p.K406K	CTGAAGTTTAAAG	.	62	15	71	0	.	0	0	0	0	0	5
IRX4	50805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1879909	1879909	+	Missense_Mutation	SNP	C	C	A	rs200961337	unknown;alternate_allele	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IRX4-226	NM_016358	exon4	c.G445T	p.A149S	GCGTGGCGTTCTT	.	106	82	62	0	.	0	0	0	0	0	5
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	16671084	16671084	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO10-3	NM_012334	exon39	c.C5434A	p.H1812N	CTTCGTGGGCCTG	.	86	13	98	0	.	0	0	0	0	0	4
C9	735	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	39308392	39308392	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C9-90	NM_001737	exon8	c.A1180T	p.I394F	CAGAGATTTCAGA	.	161	73	144	2	.	0	0	0	0	0	3
MROH2B	133558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	41032905	41032905	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_173489	exon24	c.C2380T	p.P794S	CCAGGGGCTCGTC	.	95	31	78	0	.	0	0	0	0	0	5
ITGB8	3696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20418693	20418693	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITGB8-227	NM_002214	exon4	c.G408A	p.M136I	TTTTATGCTGAAA	.	28	9	19	0	.	0	0	0	0	0	5
ASB10	136371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	150873649	150873649	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASB10-226	NM_080871	exon5	c.1173+1G>T	.	ATCTGACCTGCAG	.	288	133	234	0	.	0	0	0	0	0	4
UBE3C	9690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	157041208	157041208	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBE3C-704	NM_014671	exon19	c.C2628T	p.Y876Y	GAGCTACGAAGAC	.	109	7	90	0	.	11	11	0	0	0	4
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	114186110	114186110	+	Missense_Mutation	SNP	G	G	A	rs201775807	unknown;alternate_allele	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSMD3-1132	NM_052900	exon4	c.C550T	p.P184S	TGGGTGGAACACC	.	78	31	50	0	G|0.999;C|0.001	0	0	0	0	0	5
TLN1	7094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35716437	35716437	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TLN1-609	NM_006289	exon20	c.G2575A	p.A859T	TGGCAGCACTTAA	.	101	86	148	0	.	7	2	5	0	0	5
VPS13A	23230	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79954597	79954597	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VPS13A-161	NM_001018038	exon48	c.A6544T	p.S2182C	TTTGTCAGTTTTA	.	100	49	103	1	.	0	0	0	0	0	4
IL13RA1	3597	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	117925779	117925779	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IL13RA1-554	NM_001560	exon11	c.G1246T	p.V416L	GACTCTGTAGTGC	.	141	48	106	1	.	12	12	0	0	0	3
BCORL1	63035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129155104	129155104	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BCORL1-294	NM_021946	exon4	c.C3586T	p.R1196X	GGAAAACGAGCCG	.	321	158	208	1	.	2	1	1	0	0	5
MAP7D3	79649	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135313873	135313873	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAP7D3-110	NM_024597	exon8	c.G1243A	p.E415K	GTGCTTCCAGGCT	.	183	90	148	1	.	1	0	1	0	0	4
ADAMTS7	11173	hgsc.bcm.edu	37	15	79058090	79058090	+	Missense_Mutation	SNP	A	A	G	rs2929158	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS7-226	NM_014272	exon19	c.T4163C	p.V1388A	TCAGGGACTCTGT	.	97	6	14	0	A|0.898;G|0.102	32	30	2	0	0	1
COL6A2	1292	hgsc.bcm.edu	37	21	47552201	47552201	+	Missense_Mutation	SNP	C	C	T	rs117725825	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL6A2-515	NM_001849	exon28	c.C2795T	p.P932L	GCAGCCCGCGTGG	.	82	58	6	0	C|0.998;T|0.002	340	139	201	0	0	1
CLCA4	22802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	87033202	87033202	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLCA4-92	NM_012128	exon7	c.T1050C	p.D350D	CTTTGATAGTACT	.	142	49	147	0	.	0	0	0	0	0	5
TNR	7143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175293508	175293508	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNR-324	NM_003285	exon22	c.A3941T	p.E1314V	CTGGACTCCCCGT	.	257	67	294	0	.	0	0	0	0	0	5
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186092320	186092320	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HMCN1-113	NM_031935	exon81	c.C12467T	p.S4156L	CAGGATCAAGCAG	.	103	32	132	0	.	0	0	0	0	0	5
NFASC	23114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	204923329	204923329	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NFASC-139	NM_001005388	exon6	c.C229T	p.R77X	TGGACACGAAACA	.	120	12	144	0	.	0	0	0	0	0	4
CR2	1380	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207643213	207643213	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CR2-232	NM_001006658	exon6	c.A991T	p.K331X	AGTCAGAAGACTG	.	156	22	163	2	.	0	0	0	0	0	3
TTC40	54777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134736085	134736085	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001200049	exon12	c.C1384T	p.R462W	TGTCCCGGTAGAG	.	155	46	124	0	.	0	0	0	0	0	5
OR52I2	143502	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	4608887	4608887	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR52I2-91	NM_001005170	exon1	c.A845C	p.Y282S	TGTACTATCTACC	.	222	50	179	0	.	0	0	0	0	0	4
NLRP10	338322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	7982583	7982583	+	Silent	SNP	G	G	A	rs138681119	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRP10-209	NM_176821	exon2	c.C576T	p.T192T	AGTACCGGTGGCC	.	140	25	75	0	G|1.000;A|0.000	0	0	0	0	0	4
CAPRIN1	4076	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	34097794	34097795	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	AA	AA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CAPRIN1-91	NM_203364	exon5	c.378_379del	p.126_127del	GAAAACAATAAAG	.	50	13	70	0	.	0	0	0	0	0	3
FRMD8	83786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65167323	65167323	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FRMD8-227	NM_031904	exon8	c.G920C	p.R307T	ATAGCAGAGAGAA	.	247	40	54	0	.	0	0	0	0	0	5
TRPC6	7225	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	101375498	101375498	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPC6-93	NM_004621	exon2	c.C202T	p.R68W	TCTGCCGCCGGTG	.	150	25	151	1	.	0	0	0	0	0	4
ESAM	90952	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124631990	124631990	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ESAM-90	NM_138961	exon1	c.A61G	p.S21G	GGGCACTCAGCCC	.	166	49	155	1	.	0	0	0	0	0	4
GLB1L2	89944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134240910	134240910	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GLB1L2-25	NM_138342	exon13	c.G1224C	p.K408N	AATCAAGTCTGAA	.	97	18	91	0	.	0	0	0	0	0	5
SLC2A13	114134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	40441854	40441854	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC2A13-515	NM_052885	exon2	c.A715T	p.R239W	CAAACCTCCATCC	.	62	9	47	0	.	0	0	0	0	0	4
MCRS1	10445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49957272	49957272	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MCRS1-289	NM_001012300	exon6	c.C654T	p.S218S	GGCCTTGCTCTGG	.	46	14	56	0	.	3	2	1	0	0	5
ALX1	8092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85677521	85677521	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALX1-24	NM_006982	exon2	c.G398A	p.R133Q	AGAAACGGAGGCA	.	210	41	176	0	.	0	0	0	0	0	5
AACS	65985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	125561105	125561105	+	Silent	SNP	A	A	C	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AACS-92	NM_023928	exon3	c.A306C	p.A102A	CTATGCAGAAAAC	.	158	36	135	0	.	0	0	0	0	0	5
NOC4L	79050	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	132633391	132633391	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOC4L-90	NM_024078	exon9	c.G852C	p.L284L	GCAGCTGGCGCAG	.	87	19	101	1	.	4	4	0	0	0	3
ARL11	115761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	50204849	50204849	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARL11-90	NM_138450	exon2	c.A266G	p.D89G	TGCTGGACAGCAC	.	98	11	144	0	.	0	0	0	0	0	4
ARL11	115761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	50204863	50204863	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARL11-90	NM_138450	exon2	c.G280T	p.A94S	GATGAAGCCCGCT	.	92	11	132	0	.	0	0	0	0	0	4
SLC24A4	123041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92920319	92920319	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC24A4-93	NM_153646	exon11	c.T956A	p.F319Y	CCAAGTTCACCTT	.	302	80	395	0	.	0	0	0	0	0	5
AHNAK2	113146	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105404743	105404743	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AHNAK2-47	NM_138420	exon7	c.G17045A	p.R5682Q	TCTGGTCGTGCCT	.	153	42	145	1	.	0	0	0	0	0	4
RYR3	6263	ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34030716	34030716	+	Silent	SNP	C	C	T	rs112521485	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RYR3-520	NM_001243996	exon50	c.C7581T	p.Y2527Y	GAGCTACGGGCTA	.	57	25	110	1	C|0.995;T|0.005	0	0	0	0	0	3
SCG3	29106	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	51981440	51981440	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCG3-91	NM_013243	exon6	c.C565G	p.L189V	CATACACTGGAAG	.	86	8	159	0	.	0	0	0	0	0	3
C16orf45	89927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	15596190	15596190	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C16orf45-91	NM_001142469	exon1	c.C12A	p.D4E	GGGCGACCTCACA	.	185	22	127	0	.	0	0	0	0	0	4
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27503663	27503663	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GTF3C1-94	NM_001520	exon19	c.A3147G	p.P1049P	ACCTAGTGGGGTG	.	137	24	94	0	.	0	0	0	0	0	5
CDIPT	10423	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	29870513	29870515	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDIPT-90	NM_006319	exon6	c.637_639del	p.213_213del	GCGTCACTTCTTC	.	149	34	108	0	.	0	0	0	0	0	3
RNF165	494470	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	44013156	44013156	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RNF165-90	NM_152470	exon2	c.C65T	p.A22V	CAGGTGCCCCCTT	.	126	28	78	1	.	0	0	0	0	0	3
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9045734	9045734	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUC16-566	NM_024690	exon5	c.C35897G	p.T11966S	AAGATAGTGGTTG	.	306	100	297	0	.	0	0	0	0	0	5
DNMT1	1786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10259655	10259655	+	Silent	SNP	G	G	A	rs200928585	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNMT1-660	NM_001130823	exon27	c.C2625T	p.D875D	CTTCCCGTCGTCC	.	170	36	112	0	G|0.999;A|0.000	0	0	0	0	0	4
ZNF420	147923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37619839	37619839	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF420-90	NM_144689	exon5	c.G1946A	p.G649E	AATGTGGGAAGGC	.	88	22	60	0	.	1	1	0	0	0	5
ERF	2077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42753866	42753866	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ERF-658	NM_006494	exon4	c.C398T	p.P133L	ACTGGCGGGGCAC	.	103	23	96	0	.	4	2	2	0	0	5
ZNF226	7769	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	44680835	44680837	+	In_Frame_Del	DEL	TCA	TCA	-	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	TCA	TCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001032372	exon6	c.1420_1422del	p.474_474del	GAGAAGTCATACA	.	141	20	131	0	.	0	0	0	0	0	3
PEX13	5194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	61275821	61275821	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PEX13-91	NM_002618	exon4	c.C1128T	p.A376A	AGCTGCCTTTGAA	.	169	31	126	0	.	7	5	2	0	0	5
GLI2	2736	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	121747796	121747796	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GLI2-954	NM_005270	exon13	c.G4306A	p.A1436T	CAGGACGCAGGTG	.	312	66	256	1	.	4	4	0	0	0	3
NXPH2	11249	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	139429091	139429091	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NXPH2-72	NM_007226	exon2	c.C196T	p.P66S	GCTTGGGCACCGG	.	115	8	76	0	.	0	0	0	0	0	3
MAP2	4133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210557459	210557459	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAP2-591	NM_002374	exon7	c.G565T	p.G189C	AAGCCTGGTGAAG	.	162	37	121	0	.	0	0	0	0	0	5
SP140	11262	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	231102964	231102964	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SP140-90	NM_007237	exon3	c.A274T	p.T92S	CCAGTGACAAGAG	.	252	29	174	1	.	0	0	0	0	0	3
PANK2	80025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3869889	3869889	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PANK2-115	NM_153638	exon1	c.C142G	p.L48V	GATAGCCTCTCAT	.	118	46	162	0	.	0	0	0	0	0	5
KRTAP21-3	100288323	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	21	32090951	32090951	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001164435	exon1	c.T127G	p.Y43D	CAGAATATTTATT	.	249	42	233	0	.	0	0	0	0	0	3
IQSEC1	9922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	12977227	12977227	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IQSEC1-91	NM_014869	exon3	c.C1331G	p.P444R	TCCAGGGGCCTGG	.	54	12	56	0	.	0	0	0	0	0	4
LZTFL1	54585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45879475	45879475	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LZTFL1-90	NM_020347	exon2	c.G72C	p.K24N	GCCTCTCTTTGAA	.	60	16	59	0	.	0	0	0	0	0	5
PTH1R	5745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46943321	46943321	+	Silent	SNP	C	C	A	rs151330461	byfrequency;alternate_allele	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTH1R-522	NM_001184744	exon12	c.C1182A	p.A394A	CAACGCCGGCCGG	.	201	52	236	0	C|1.000;T|0.000	0	0	0	0	0	5
MME	4311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	154884739	154884739	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MME-516	NM_007287	exon18	c.C1709A	p.S570Y	AGCAGTCCAACTC	.	103	30	111	0	.	0	0	0	0	0	5
STIM2	57620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	26997088	26997088	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STIM2-91	NM_001169118	exon4	c.A485G	p.N162S	ACAACAATGTCAA	.	67	16	95	0	.	3	3	0	0	0	5
SLCO6A1	133482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	101748695	101748695	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLCO6A1-96	NM_173488	exon9	c.A1625C	p.K542T	ATTACCTTTTTTT	.	39	18	51	0	.	0	0	0	0	0	5
BPHL	670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	3118992	3118992	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BPHL-90	NM_004332	exon1	c.C18T	p.G6G	GCTGGGCGGCCGG	.	57	11	30	0	.	0	0	0	0	0	3
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	65655687	65655687	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EYS-660	NM_001142800	exon15	c.C2380T	p.R794X	CTCACCGATAGCT	.	91	24	90	0	.	0	0	0	0	0	5
C6orf58	352999	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	127899852	127899852	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C6orf58-90	NM_001010905	exon2	c.G323A	p.R108Q	CAACCCGAAGGAC	.	153	51	133	1	.	0	0	0	0	0	4
FGFR1OP	11116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167436000	167436000	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FGFR1OP-683	NM_007045	exon8	c.C683G	p.S228C	TTGGATCTTTTCT	.	79	18	87	0	.	8	8	0	0	0	5
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	18705997	18705997	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HDAC9-227	NM_178425	exon11	c.A1629G	p.G543G	ACTGGGACAAGTT	.	185	38	171	0	.	0	0	0	0	0	5
TTC16	158248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130492920	130492920	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTC16-90	NM_144965	exon14	c.A1858G	p.T620A	GTCAGGACCACAG	.	67	23	62	0	.	0	0	0	0	0	5
TTC16	158248	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	130493619	130493619	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTC16-90	NM_144965	exon14	c.G2557A	p.G853R	ACCTGGGGACCCA	.	215	19	185	0	.	0	0	0	0	0	3
SLC2A6	11182	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	136339193	136339193	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC2A6-90	NM_017585	exon7	c.A945G	p.A315A	GATGGCTGCGTCG	.	112	7	102	0	.	0	0	0	0	0	3
TIMP3	7078	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	33255323	33255324	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TIMP3-226	NM_000362	exon5	c.595_596insC	p.A199fs	GGATGGGCCCCCC	.	76	20	74	0	.	0	0	0	0	0	3
ELMO3	79767	broad.mit.edu	37	16	67234630	67234630	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ELMO3-90	NM_024712	exon7	c.G743A	p.S248N	TGGAGAGTGTGAC	.	294	32	100	2	.	3	1	2	0	0	1
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	62	10	19	0	C|0.960;G|0.040	6	3	3	0	0	1
CRB1	23418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	197404443	197404443	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRB1-161	NM_201253	exon9	c.T3450G	p.H1150Q	TTTGCATGGAGGA	.	240	26	144	0	.	0	0	0	0	0	4
LGALS8	3964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236700878	236700878	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LGALS8-91	NM_006499	exon4	c.G127A	p.A43T	AGTGACGCAGACA	.	185	87	134	0	.	1	0	1	0	0	5
PPYR1	5540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	47087602	47087602	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPYR1-524	NM_005972	exon3	c.C819A	p.A273A	GGTGGCCTTTGCT	.	135	30	95	0	.	0	0	0	0	0	5
KIAA1279	26128	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	70748621	70748621	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1279-91	NM_015634	exon1	c.G33C	p.E11D	CTGCGAGAAATTC	.	234	42	211	1	.	5	4	1	0	0	3
PAPSS2	9060	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	89474830	89474831	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAPSS2-493	NM_001015880	exon6	c.728_729del	p.243_243del	CTGAAACTCTCCC	.	101	39	102	0	.	0	0	0	0	0	3
SLK	9748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105779553	105779553	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLK-549	NM_014720	exon16	c.C3194T	p.T1065I	GACAGACTCAAGA	.	202	37	212	0	.	33	28	5	0	0	5
CREB3L1	90993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46321507	46321507	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CREB3L1-92	NM_052854	exon2	c.C124T	p.H42Y	CTGGACCACTTTA	.	310	112	343	0	.	0	0	0	0	0	5
NTN4	59277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	96104338	96104338	+	Missense_Mutation	SNP	C	C	T	rs148021049	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NTN4-92	NM_021229	exon5	c.G1061A	p.R354H	CCACTACGATTCC	.	174	84	184	0	C|0.999;T|0.001	19	13	6	0	0	5
ATP8A2	51761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	26436472	26436472	+	Missense_Mutation	SNP	A	A	G	rs138600634	unknown;alternate_allele	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP8A2-138	NM_016529	exon33	c.A3109G	p.T1037A	ATGCTGACCTGGC	.	178	54	125	0	A|0.999;T|0.000	0	0	0	0	0	5
PDX1	3651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	28494294	28494294	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDX1-514	NM_000209	exon1	c.T19C	p.Y7H	GAGCAGTACTACG	.	204	82	80	0	.	0	0	0	0	0	4
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7579716	7579716	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TP53-70225	NM_000546	exon3	c.80delC	p.P27fs	TTTTCAGGAAGTC	.	28	25	43	0	.	0	0	0	0	0	3
PTPN2	5771	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	12830976	12830976	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPN2-652	NM_001207013	exon4	c.T326A	p.V109D	ATGACAACTGCTT	.	235	45	286	2	.	7	6	1	0	0	3
DOT1L	84444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2191208	2191208	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DOT1L-132	NM_032482	exon5	c.C462T	p.T154T	GATGACCGACGAC	.	239	112	229	0	.	7	1	6	0	0	5
KCNJ3	3760	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	155555818	155555818	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNJ3-92	NM_001260509	exon1	c.C531T	p.I177I	CCTCATCGGCTGC	.	99	6	103	0	.	0	0	0	0	0	3
TEF	7008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	41791922	41791922	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TEF-91	NM_003216	exon4	c.G870C	p.K290N	GTGCAAGACCATC	.	183	12	192	0	.	8	8	0	0	0	3
SLC9A3	6550	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	475724	475724	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC9A3-90	NM_004174	exon15	c.G2203C	p.E735Q	GGAACTCGATCCC	.	100	5	94	0	.	0	0	0	0	0	3
APC	324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	112103039	112103039	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	APC-12026	NM_001127511	exon3	c.A404G	p.N135S	TTGTAAATGGAAG	.	120	50	141	0	.	1	1	0	0	0	5
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	170632528	170632528	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RANBP17-524	NM_022897	exon20	c.C2143T	p.R715C	TGACAGCGTATGT	.	213	14	184	0	.	0	0	0	0	0	3
DOPEY1	23033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	83830485	83830485	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DOPEY1-155	NM_015018	exon10	c.C1074G	p.I358M	TTTAATCAGTTTA	.	152	32	72	0	.	0	0	0	0	0	5
KLRG2	346689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139164980	139164980	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLRG2-90	NM_198508	exon2	c.C771T	p.Y257Y	CTTCACGTACATG	.	107	34	72	0	.	0	0	0	0	0	5
CLCN1	1180	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	143042815	143042815	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLCN1-156	NM_000083	exon17	c.T2132C	p.V711A	CCTTTGTGGATGA	.	195	69	108	1	.	0	0	0	0	0	3
SHROOM4	57477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	50345785	50345785	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SHROOM4-131	NM_020717	exon7	c.T3790A	p.S1264T	CCCCTGAAGGAGG	.	82	14	78	0	.	0	0	0	0	0	4
PNKP	11284	broad.mit.edu	37	19	50368482	50368482	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PNKP-253	NM_007254	exon4	c.G400A	p.E134K	GCAGCTCAGCATC	.	72	3	76	0	.	82	80	2	0	0	1
TEKT4	150483	ucsc.edu	37	2	95542476	95542476	+	Missense_Mutation	SNP	C	C	T	rs1052809	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TEKT4-155	NM_144705	exon6	c.C1270T	p.R424C	CGTACTCGCTACC	.	54	5	36	2	C|0.985;T|0.015	10	0	10	0	0	1
ZCCHC17	51538	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	31819587	31819587	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZCCHC17-91	NM_016505	exon6	c.G418T	p.G140C	TGTAAAGGTAGGG	.	106	36	105	0	.	0	0	0	0	0	4
ANKRD26	22852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27322227	27322227	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD26-138	NM_014915	exon25	c.C3734T	p.T1245M	CGTGACGTAACCT	.	63	46	109	0	.	0	0	0	0	0	5
WNK1	65125	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	966392	966392	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WNK1-916	NM_001184985	exon5	c.C1377A	p.C459X	AGGATGCATACGA	.	336	64	231	1	.	0	0	0	0	0	4
ATF7IP	55729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	14578126	14578126	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATF7IP-252	NM_018179	exon2	c.A1277G	p.N426S	TAGAAAATACAGA	.	71	30	57	0	.	0	0	0	0	0	5
RECQL	5965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	21624011	21624011	+	Silent	SNP	A	A	C	novel	unknown	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RECQL-228	NM_032941	exon15	c.T1689G	p.A563A	AGCATAAGCTGTA	.	141	60	97	0	.	0	0	0	0	0	5
CTDSP2	10106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	58217464	58217464	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTDSP2-514	NM_005730	exon8	c.T737C	p.L246P	AGGTTCAGCAACT	.	184	73	126	0	.	0	0	0	0	0	5
GAS2L3	283431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	101005850	101005850	+	Missense_Mutation	SNP	G	G	C	rs143611209	byfrequency;alternate_allele	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GAS2L3-227	NM_174942	exon6	c.G376C	p.A126P	AATACCGCAAACT	.	207	32	126	0	G|1.000;T|0.000	0	0	0	0	0	5
TLE3	7090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	70349954	70349954	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TLE3-522	NM_005078	exon13	c.G1104A	p.A368A	GGGCGCCGCATAG	.	49	37	50	0	.	0	0	0	0	0	5
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	27523174	27523190	+	Frame_Shift_Del	DEL	CGTTTAAATTCCTTCAG	CGTTTAAATTCCTTCAG	-	novel	unknown	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	CGTTTAAATTCCTTCAG	CGTTTAAATTCCTTCAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GTF3C1-94	NM_001520	exon7	c.1006_1022del	p.336_341del	TCATTCCGTTTAA	.	211	18	156	0	.	0	0	0	0	0	3
PYCARD	29108	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	31213958	31213958	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PYCARD-651	NM_013258	exon1	c.G54A	p.E18E	GAGCTCCTCGGCG	.	166	35	38	0	.	0	0	0	0	0	4
NF1	4763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	29661949	29661949	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NF1-3353	NM_001042492	exon40	c.5906delA	p.Q1969fs	AACGACAAAGAGT	.	98	62	82	0	.	0	0	0	0	0	3
PRKCG	5582	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	54393237	54393237	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRKCG-1367	NM_002739	exon5	c.495delC	p.I165fs	GGAGATCCGGGCT	.	57	24	39	0	.	0	0	0	0	0	3
XDH	7498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	31572920	31572920	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	XDH-158	NM_000379	exon25	c.C2801A	p.T934N	CCACAGGTCACTG	.	55	17	74	0	.	0	0	0	0	0	4
ST6GAL1	6480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	186793513	186793513	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ST6GAL1-650	NM_003032	exon7	c.T1143C	p.H381H	GAAGCATCTCAAC	.	87	28	89	0	.	0	0	0	0	0	5
HIST1H4E	8367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26204877	26204877	+	Missense_Mutation	SNP	C	C	T	rs201304438	unknown;alternate_allele	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIST1H4E-69	NM_003545	exon1	c.C5T	p.S2F	TCATGTCTGGTCG	.	74	30	75	0	C|0.999;G|0.000	0	0	0	0	0	5
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	72945399	72945399	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RIMS1-144	NM_014989	exon8	c.C1825G	p.P609A	ACCATGCCCAAAG	.	114	34	119	0	.	0	0	0	0	0	5
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	72945409	72945409	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RIMS1-144	NM_014989	exon8	c.C1835G	p.S612X	AAGACTCAGGTGC	.	114	34	113	0	.	0	0	0	0	0	5
POLD2	5425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44156093	44156093	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POLD2-229	NM_006230	exon7	c.A902G	p.K301R	GTTTTCTTGGTGA	.	88	14	91	0	.	0	0	0	0	0	4
ZNF703	80139	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	37554967	37554967	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF703-523	NM_025069	exon2	c.C548T	p.S183F	CGTCCTCCTCGTC	.	72	23	33	0	.	0	0	0	0	0	4
KIAA2026	158358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5969127	5969127	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA2026-92	NM_001017969	exon3	c.C1104G	p.T368T	TTCCCAGGTCCTA	.	91	28	73	0	.	0	0	0	0	0	5
SMC1A	8243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	53440047	53440047	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMC1A-232	NM_006306	exon5	c.T657C	p.A219A	TACCTGAGCCCGT	.	139	20	103	0	.	0	0	0	0	0	4
PIN4	5303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	71417357	71417357	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIN4-130	NM_006223	exon4	c.T452C	p.M151T	TTATTATGGTCGA	.	259	105	240	0	.	0	0	0	0	0	5
NSDHL	50814	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	152031231	152031231	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NSDHL-130	NM_015922	exon5	c.T506C	p.I169T	AACCCATTGACTA	.	283	103	178	2	.	0	0	0	0	0	3
CAPN2	824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	223949944	223949944	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CAPN2-523	NM_001748	exon14	c.G1623C	p.L541F	CCAGTTGGCAGGA	.	161	77	131	0	.	0	0	0	0	0	5
PDE2A	5138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	72308628	72308628	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDE2A-156	NM_002599	exon5	c.A359G	p.N120S	AGCCCATTGCAGC	.	29	11	55	0	.	3	2	1	0	0	5
DCP1B	196513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2058258	2058258	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DCP1B-91	NM_152640	exon8	c.C1767G	p.L589L	CTGAATGAGGTAC	.	70	54	110	0	.	0	0	0	0	0	5
AVPR1A	552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	63544384	63544384	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AVPR1A-946	NM_000706	exon1	c.G233A	p.R78Q	GGCGTCCGGTGCA	.	171	91	49	0	.	3	0	3	0	0	5
PNN	5411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	39650733	39650733	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PNN-91	NM_002687	exon9	c.C1820A	p.S607Y	GTAGTTCCAGTAG	.	212	100	213	1	.	89	44	45	0	0	4
SPTB	6710	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	65241872	65241872	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPTB-100	NM_000347	exon22	c.C4813A	p.L1605I	CGTAGAGCTCCTG	.	137	10	105	0	.	2	2	0	0	0	3
MYO5A	4644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	52689550	52689550	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO5A-93	NM_000259	exon10	c.G1167T	p.K389N	GATGGGCTTGATG	.	170	64	167	0	.	1	1	0	0	0	5
ARID3B	10620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74865529	74865529	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARID3B-90	NM_006465	exon4	c.C681T	p.V227V	CTTCGTCTTTATG	.	97	43	101	0	.	1	1	0	0	0	5
HYDIN	54768	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	71012910	71012910	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HYDIN-92	NM_001270974	exon30	c.C4545A	p.A1515A	TTTCCTGGCTTGA	.	214	36	122	0	.	0	0	0	0	0	4
EEF2	1938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3976662	3976662	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EEF2-90	NM_001961	exon15	c.G2467C	p.D823H	AGGGGTCTCCGGG	.	56	25	71	0	.	1945	1140	803	0	2	5
MYO7B	4648	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	128394466	128394466	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO7B-47	NM_001080527	exon46	c.G6227T	p.R2076L	GCAGCCGCCTGCT	.	63	4	59	0	.	2	2	0	0	0	3
CASS4	57091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	55012236	55012236	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CASS4-25	NM_020356	exon2	c.C53T	p.A18V	CCAGGGCACTTTA	.	138	59	123	0	.	0	0	0	0	0	5
BCR	613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	23627302	23627302	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BCR-1349	NM_021574	exon10	c.C2320G	p.P774A	GCAGTGCCCAACA	.	224	109	207	1	.	14	8	6	0	0	4
CASR	846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	122003707	122003707	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CASR-97	NM_001178065	exon7	c.G2936A	p.G979D	TCTTTGGCAGCGG	.	376	158	366	0	.	0	0	0	0	0	5
TAF1L	138474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	32630736	32630736	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAF1L-870	NM_153809	exon1	c.G4842A	p.E1614E	CACAATCTCCTGA	.	235	101	240	0	.	0	0	0	0	0	5
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113192698	113192698	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SVEP1-75	NM_153366	exon33	c.G5386A	p.E1796K	CATTTTCCGGATT	.	133	55	94	0	.	0	0	0	0	0	5
GPRASP2	114928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101971586	101971586	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPRASP2-131	NM_138437	exon4	c.G1789T	p.E597X	TCTGAAGAGTTTG	.	170	155	142	0	.	12	0	12	0	0	5
CYP17A1	1586	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	104590691	104590692	+	Nonsense_Mutation	INS	-	-	AGCTTACTGACGGTGAG	novel	unknown	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CYP17A1-90	NM_000102	exon8	c.1295_1296insCTCACCGTCAGTAAGCT	p.Y432_L433delinsSHRQX	GGCAAATAGCTTA	.	156	16	182	0	.	0	0	0	0	0	3
NBPF1	55672	broad.mit.edu	37	1	16918395	16918395	+	Missense_Mutation	SNP	T	T	C	rs60769486	unknown	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	.	.	.	.	AAACATTTCTCTT	.	114	8	127	1	.	13	9	4	0	0	1
PCDHB13	56123	hgsc.bcm.edu	37	5	140595625	140595625	+	Missense_Mutation	SNP	G	G	A	rs76927815	unknown	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB13-93	NM_018933	exon1	c.G1930A	p.V644I	GTGCTGGTCAAGG	.	170	68	14	0	G|0.500;A|0.500	5	3	2	0	0	1
ND2	0	bcgsc.ca	37	MT	5505	5505	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361453	exon1	c.A1036G	p.I346V	CTAATAATCTTAT	.	15	12	40	0	.	24	3	21	0	0	1
CPXM2	119587	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	125516731	125516731	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CPXM2-92	NM_198148	exon12	c.1915delC	p.Q639fs	ATACCTGCTCCAT	.	90	64	144	0	.	0	0	0	0	0	3
ALG10	84920	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	34175538	34175538	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALG10-91	NM_032834	exon1	c.G4A	p.A2T	GGAATGGCGCAGC	.	173	63	126	0	.	1	0	1	0	0	4
RASGRF1	5923	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	79339163	79339163	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RASGRF1-662	NM_001145648	exon5	c.G803A	p.R268H	AGCGGGCGCAGGA	.	110	64	150	1	.	20	0	20	0	0	3
LRRC36	55282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67400961	67400961	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC36-90	NM_018296	exon8	c.C796T	p.P266S	CGATCCCCAGAGA	.	102	72	124	0	.	0	0	0	0	0	5
PRKAR1A	5573	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	66526554	66526554	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRKAR1A-1141	NM_212472	exon11	c.1110delC	p.I370fs	AAACATCCAGCAG	.	114	81	145	0	.	0	0	0	0	0	3
RPN2	6185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	35838497	35838497	+	Silent	SNP	T	T	G	novel	unknown	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RPN2-93	NM_002951	exon8	c.T915G	p.V305V	CACTGTTAAACTA	.	43	8	61	0	.	140	97	43	0	0	4
NXPE3	91775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	101520307	101520307	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_145037	exon5	c.T322A	p.F108I	AGCTACTTTGTCA	.	105	84	122	0	.	2	0	2	0	0	5
PSMC2	5701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	102995342	102995342	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PSMC2-90	NM_001204453	exon3	c.A136C	p.K46Q	CAGATCAAGCAAG	.	71	24	61	0	.	61	33	28	0	0	5
PHKA2	5256	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	18938279	18938279	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHKA2-131	NM_000292	exon18	c.T1834C	p.F612L	TGTAGAACGATGT	.	163	65	125	1	.	5	5	0	0	0	3
KIRREL	55243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158058203	158058203	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIRREL-91	NM_018240	exon8	c.C1003T	p.P335S	GGGAATCCCCCCC	.	190	40	170	0	.	0	0	0	0	0	5
SELE	6401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	169697005	169697005	+	Missense_Mutation	SNP	A	A	G	rs199700651	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SELE-95	NM_000450	exon9	c.T1343C	p.I448T	TCTCCAATAGGGG	.	124	32	83	0	A|0.999;G|0.001	0	0	0	0	0	4
MTR	4548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	237060314	237060314	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MTR-92	NM_000254	exon32	c.T3607A	p.L1203I	ATTAGGTTAACAG	.	90	9	78	0	.	0	0	0	0	0	4
MRC1	4360	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	18122634	18122634	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MRC1-68	NM_002438	exon4	c.G644A	p.G215D	TTGAGGGCAGTGA	.	227	69	202	0	.	0	0	0	0	0	4
BTAF1	9044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	93711281	93711281	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BTAF1-92	NM_003972	exon5	c.G522C	p.L174F	GGATTTGGATTAT	.	103	31	78	0	.	0	0	0	0	0	5
SEMA4G	57715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	102740027	102740027	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEMA4G-154	NM_001203244	exon10	c.G1277A	p.R426H	ACATACGCTACAC	.	353	70	170	0	.	0	0	0	0	0	5
TNKS1BP1	85456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57076797	57076797	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNKS1BP1-91	NM_033396	exon6	c.G3388A	p.D1130N	CTCTGTCGTTGCC	.	114	28	82	0	.	0	0	0	0	0	5
LRP1	4035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57559628	57559628	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRP1-596	NM_002332	exon16	c.C2571T	p.G857G	GCCAGGCGAGTTT	.	268	54	163	1	.	0	0	0	0	0	4
PPFIA2	8499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	81769579	81769579	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPFIA2-231	NM_001220476	exon9	c.G1127A	p.R376Q	ACCTGCCGCAGGA	.	132	45	114	0	.	0	0	0	0	0	5
PTPN11	5781	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112893833	112893833	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPN11-7239	NM_080601	exon6	c.A722G	p.D241G	CCACAGATAAAGT	.	379	77	332	1	.	0	0	0	0	0	4
CDC16	8881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	115027384	115027384	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDC16-226	NM_003903	exon15	c.C1337G	p.P446R	GGGAACCTTTGTT	.	148	30	143	0	.	0	0	0	0	0	5
MBIP	51562	ucsc.edu;bcgsc.ca;mdanderson.org	37	14	36789780	36789780	+	Silent	SNP	C	C	G	rs138198154	byfrequency;alternate_allele	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MBIP-658	NM_016586	exon1	c.G15C	p.T5T	AAGCTCCGTGGCA	.	69	19	45	1	C|0.998;T|0.002	0	0	0	0	0	3
HSPA2	3306	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65009483	65009483	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HSPA2-226	NM_021979	exon1	c.A1916G	p.D639G	AAGTGGACTAAGC	.	57	13	79	1	.	0	0	0	0	0	4
NRXN3	9369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	79434571	79434571	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NRXN3-587	NM_004796	exon11	c.C1905T	p.L635L	AAAGCTCGTGGCC	.	253	52	157	0	.	0	0	0	0	0	5
KIF23	9493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69721517	69721517	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF23-227	NM_138555	exon10	c.G1037A	p.R346Q	CTAACCGGACCAG	.	139	33	120	0	.	0	0	0	0	0	5
FXR2	9513	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7495630	7495630	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_004860	exon16	c.G1868A	p.R623H	CTCTGGCGGCTCT	.	43	4	58	0	.	0	0	0	0	0	3
MSL1	339287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38289309	38289309	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MSL1-68	NM_001012241	exon7	c.T714C	p.S238S	TGACAGTGTGTTT	.	118	22	107	0	.	0	0	0	0	0	5
KCNH4	23415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40322162	40322162	+	Silent	SNP	C	C	T	rs140040426	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNH4-153	NM_012285	exon8	c.G1353A	p.A451A	CTTCTCCGCGTCG	.	220	62	114	0	C|1.000;T|0.000	0	0	0	0	0	5
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	7023307	7023307	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LAMA1-149	NM_005559	exon19	c.G2557A	p.G853S	CGTTGCCGCTGCA	.	177	37	114	0	.	0	0	0	0	0	5
DSC2	1824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	28651720	28651720	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DSC2-517	NM_024422	exon13	c.C1976A	p.S659Y	ACACTAGACATGC	.	234	54	163	0	.	0	0	0	0	0	5
SBNO2	22904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1127619	1127619	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_014963	exon5	c.C425T	p.P142L	GTGGAGGGGGCAG	.	116	39	69	0	.	0	0	0	0	0	5
MCOLN1	57192	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	7594484	7594484	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MCOLN1-153	NM_020533	exon11	c.C1245T	p.I415I	CCTCATCGCCACA	.	110	45	135	1	.	0	0	0	0	0	3
ATP13A1	57130	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	19764811	19764811	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP13A1-138	NM_020410	exon14	c.C1956T	p.A652A	CTTCACGGCCGCG	.	42	13	48	0	.	0	0	0	0	0	4
NPHS1	4868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36342537	36342537	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NPHS1-49	NM_004646	exon2	c.G96A	p.R32R	GAAGCCCCGGGGA	.	307	61	173	0	.	0	0	0	0	0	5
SYNE4	163183	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	36494356	36494364	+	In_Frame_Del	DEL	GAGGAGGAA	GAGGAGGAA	-	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	GAGGAGGAA	GAGGAGGAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001039876	exon8	c.1090_1098del	p.364_366del	CACCAGGAGGAGG	.	186	19	139	0	.	0	0	0	0	0	3
TSEN34	79042	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	54695770	54695770	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TSEN34-90	NM_024075	exon3	c.G442A	p.D148N	AAAGAGGATGAGA	.	153	13	89	0	.	0	0	0	0	0	3
RHOB	388	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	20647308	20647308	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RHOB-848	NM_004040	exon1	c.G82C	p.D28H	AGTAAGGACGAGT	.	227	55	128	1	.	0	0	0	0	0	3
RMDN2	151393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	38216713	38216713	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_144713	exon6	c.A1355T	p.E452V	TATCTGAGTTTGA	.	37	7	38	0	.	0	0	0	0	0	4
ZC3H6	376940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113079374	113079374	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZC3H6-93	NM_198581	exon8	c.T1018C	p.Y340H	AAATGTTACCAGG	.	126	33	114	0	.	0	0	0	0	0	5
ABCB11	8647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169853195	169853195	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCB11-139	NM_003742	exon6	c.A427G	p.S143G	AGTAACTGGCAAA	.	81	20	91	0	.	0	0	0	0	0	5
FN1	2335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	216299458	216299458	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FN1-584	NM_212476	exon2	c.G238A	p.G80R	TTCCTCCATAACA	.	135	19	75	0	.	0	0	0	0	0	4
SPHKAP	80309	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	228883336	228883336	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPHKAP-167	NM_030623	exon7	c.G2234A	p.R745K	GTCTCCCTCCTTC	.	145	30	109	1	.	0	0	0	0	0	3
CD93	22918	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23065458	23065458	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CD93-153	NM_012072	exon1	c.T1372G	p.W458G	GCACCCAGCCTGG	.	132	28	59	1	.	0	0	0	0	0	4
OPRL1	4987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62724242	62724242	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OPRL1-69	NM_000913	exon2	c.C169T	p.L57F	GTGGGGCTCTACC	.	163	29	107	0	.	0	0	0	0	0	5
TMPRSS3	64699	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	43808632	43808632	+	Missense_Mutation	SNP	C	C	T	rs139484231	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMPRSS3-155	NM_001256317	exon5	c.G326A	p.R109Q	CCCACCCGGACTG	.	189	32	123	1	C|1.000;T|0.000	0	0	0	0	0	3
FAM19A5	25817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	49042499	49042499	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM19A5-90	NM_001082967	exon2	c.G203A	p.C68Y	CCCGCTGTGCGTG	.	211	72	52	0	.	0	0	0	0	0	5
PLXNA1	5361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126739102	126739102	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLXNA1-93	NM_032242	exon20	c.G3953A	p.G1318D	GTGCCGGCATCCC	.	126	41	119	0	.	0	0	0	0	0	5
SAMD7	344658	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	169654233	169654233	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SAMD7-91	NM_182610	exon8	c.C1148A	p.S383X	TTCAGTCACAGGT	.	94	24	130	1	.	0	0	0	0	0	3
CLCN2	1181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184072697	184072697	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLCN2-90	NM_001171087	exon13	c.T1391G	p.V464G	CCAATGACAAAGA	.	473	129	478	1	.	0	0	0	0	0	5
AFP	174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74313330	74313330	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AFP-91	NM_001134	exon8	c.G995A	p.R332K	TAAACAGGTTTTT	.	109	29	132	0	.	0	0	0	0	0	5
CXCL9	4283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	76926002	76926002	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CXCL9-227	NM_002416	exon3	c.C236G	p.S79X	TCTGCTGAATCTG	.	35	10	60	0	.	0	0	0	0	0	4
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123201033	123201033	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1109-80	NM_015312	exon49	c.A8695G	p.I2899V	ATCAGTATCAACA	.	109	39	92	0	.	0	0	0	0	0	5
CCRN4L	25819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	139966424	139966424	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCRN4L-91	NM_012118	exon3	c.G1092A	p.W364X	TACCTGGAAGATC	.	176	51	167	0	.	0	0	0	0	0	5
SMARCA5	8467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	144469148	144469148	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMARCA5-227	NM_003601	exon22	c.A2840G	p.Y947C	AAAACTATACTGA	.	65	11	91	0	.	0	0	0	0	0	4
ANKH	56172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	14758635	14758635	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKH-91	NM_054027	exon3	c.G386A	p.R129K	GCCCTTCTCGTCT	.	92	19	91	0	.	0	0	0	0	0	5
BDP1	55814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	70819810	70819810	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BDP1-92	NM_018429	exon25	c.T5432G	p.L1811R	TTGCCCTGGATGG	.	136	35	157	0	.	0	0	0	0	0	5
ANKRD34B	340120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79855316	79855316	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD34B-69	NM_001004441	exon5	c.G523C	p.D175H	ACCCATCTATATC	.	71	25	57	0	.	0	0	0	0	0	5
DPCR1	135656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30917535	30917535	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DPCR1-90	NM_080870	exon2	c.G1294A	p.E432K	GCCAACGAGAACA	.	252	68	231	0	.	0	0	0	0	0	5
SGK1	6446	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	134494667	134494669	+	In_Frame_Del	DEL	GAC	GAC	-	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	GAC	GAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SGK1-981	NM_001143676	exon6	c.549_551del	p.183_184del	GGATTGGACGACG	.	103	16	70	0	.	0	0	0	0	0	3
ZNF212	7988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	148951008	148951008	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF212-91	NM_012256	exon5	c.G990A	p.Q330Q	GCAGCAGCTGGCC	.	78	19	70	0	.	0	0	0	0	0	5
FBXO16	157574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	28309857	28309857	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXO16-227	NM_172366	exon6	c.C644T	p.A215V	GGAAGTGCTTTCT	.	116	23	131	0	.	0	0	0	0	0	5
SEC16A	9919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139360883	139360883	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_014866	exon7	c.G3961A	p.D1321N	GAGGATCGTACCT	.	183	40	100	0	.	0	0	0	0	0	5
ARHGAP6	395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	11204435	11204435	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGAP6-227	NM_006125	exon5	c.T1194G	p.D398E	TTTCTTATCTCTG	.	80	32	123	0	.	0	0	0	0	0	5
BEX4	56271	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	102471120	102471120	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BEX4-62	NM_001080425	exon3	c.C39T	p.N13N	TCTCAACGGGGAA	.	181	81	262	2	.	0	0	0	0	0	3
GPR112	139378	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135432457	135432457	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR112-183	NM_153834	exon6	c.A6592G	p.T2198A	ATATCCACTGGGG	.	140	67	187	2	.	0	0	0	0	0	4
TNFRSF25	8718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	6525618	6525618	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNFRSF25-714	NM_148966	exon2	c.G42A	p.A14A	GAGGAGCGCCTGG	.	174	141	138	0	.	2	1	1	0	0	4
MFAP2	4237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17302155	17302155	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MFAP2-514	NM_017459	exon7	c.C357T	p.N119N	GACCTCGTTGAGA	.	96	73	183	0	.	1	1	0	0	0	5
IGSF21	84966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	18691904	18691904	+	Missense_Mutation	SNP	C	C	T	rs144142024	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGSF21-156	NM_032880	exon6	c.C728T	p.T243M	CCTACACGGAGCG	.	154	125	274	1	C|1.000;T|0.000	3	3	0	0	0	4
EMC1	23065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19545802	19545802	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_015047	exon23	c.C2977T	p.R993X	TTTATCGCCAGGC	.	70	41	105	0	.	33	15	18	0	0	5
EPHB2	2048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	23222940	23222940	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPHB2-1381	NM_004442	exon9	c.G1737A	p.T579T	GTACACGGACAAG	.	78	62	143	0	.	12	0	12	0	0	5
SEPN1	57190	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	26139207	26139207	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEPN1-92	.	.	.	.	GGCCTTCGACCGA	.	62	50	90	0	.	12	1	11	0	0	4
RBBP4	5928	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	33134949	33134949	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBBP4-227	NM_005610	exon7	c.A879G	p.S293S	AGGATCAGCTGAC	.	100	87	143	2	.	0	0	0	0	0	3
DLGAP3	58512	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	35365799	35365799	+	Missense_Mutation	SNP	C	C	T	rs140339373	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DLGAP3-71	NM_001080418	exon2	c.G1183A	p.G395S	AGCTGCCGCTCCG	.	95	7	125	0	C|0.999;T|0.000	4	3	1	0	0	3
BMP8B	656	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	40230376	40230376	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BMP8B-91	NM_001720	exon4	c.C787T	p.R263W	CTGCCCGAGGGGT	.	996	157	1460	0	.	0	0	0	0	0	3
FOXJ3	22887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	42657281	42657281	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FOXJ3-228	NM_001198851	exon11	c.C1044G	p.S348R	GGACAGGCTGCTT	.	169	144	246	0	.	6	0	6	0	0	5
C1orf87	127795	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	60456488	60456488	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C1orf87-154	NM_152377	exon12	c.C1498T	p.R500X	TGGCTCGTTCCTT	.	64	35	125	1	.	0	0	0	0	0	3
C1orf87	127795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	60463390	60463390	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C1orf87-154	NM_152377	exon11	c.G1371C	p.Q457H	GAAGGGCTGGGAG	.	85	73	125	0	.	0	0	0	0	0	5
SGIP1	84251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67155933	67155933	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SGIP1-93	NM_032291	exon17	c.C1504T	p.R502W	TTAGCGCGGGCTG	.	73	61	85	0	.	0	0	0	0	0	5
SGIP1	84251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	67195022	67195022	+	Silent	SNP	G	G	A	rs150154953	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SGIP1-93	NM_032291	exon20	c.G1818A	p.P606P	CAACCCGTCCCCA	.	146	107	180	0	G|0.999;A|0.001	1	1	0	0	0	4
SEP15	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	87369102	87369102	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEP15-68	.	.	.	.	TGCCTCCGATGAA	.	87	75	97	0	.	53	4	49	0	0	4
OLFML3	56944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	114524270	114524270	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OLFML3-68	NM_020190	exon3	c.G1100A	p.R367H	TTCCCCGCAGATA	.	85	11	120	0	.	0	0	0	0	0	4
TSPAN2	10100	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	115615562	115615562	+	Missense_Mutation	SNP	A	A	G	rs199774469	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TSPAN2-226	NM_005725	exon2	c.T136C	p.S46P	CTGATGATAACTC	.	97	75	127	2	A|0.999;G|0.001	0	0	0	0	0	4
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	150530506	150530506	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTSL4-92	NM_019032	exon14	c.2263delG	p.G755fs	GAATTTGGGGGGG	.	52	14	40	0	.	0	0	0	0	0	3
LCE2B	26239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152659333	152659333	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LCE2B-92	NM_014357	exon2	c.A14G	p.Q5R	GCCAGCAAAACCA	.	80	69	86	0	.	0	0	0	0	0	5
HCN3	57657	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155257602	155257602	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HCN3-154	NM_020897	exon8	c.G1673A	p.R558H	GGAAGCGCTCCGA	.	254	39	456	1	.	8	8	0	0	0	4
GON4L	54856	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	155823172	155823172	+	Nonsense_Mutation	DEL	T	T	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GON4L-93	NM_001037533	exon2	c.400delA	p.M134X	GTGTCATTTTTTT	.	110	33	131	0	.	0	0	0	0	0	3
MEF2D	4209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156437983	156437983	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MEF2D-659	NM_005920	exon11	c.G1356A	p.A452A	GGGAGGCGCAGGG	.	73	63	40	0	.	16	0	16	0	0	5
NES	10763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156640677	156640677	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NES-520	NM_006617	exon4	c.G3303A	p.P1101P	CTGCCCCGGGCCT	.	52	47	48	0	.	2	0	2	0	0	4
UCK2	7371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	165865482	165865482	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UCK2-91	NM_012474	exon4	c.C412A	p.L138M	GGGATCCTGGCCT	.	145	19	190	0	.	7	7	0	0	0	4
ILDR2	387597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	166891885	166891885	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ILDR2-91	NM_199351	exon8	c.C1156T	p.R386C	GCCCGCGGCTTGC	.	61	45	114	0	.	0	0	0	0	0	5
SELP	6403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	169559391	169559391	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SELP-94	NM_003005	exon16	c.C2488T	p.P830S	CTTAAGGACTCGG	.	43	35	63	0	.	0	0	0	0	0	5
RASAL2	9462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	178412191	178412191	+	Missense_Mutation	SNP	C	C	T	rs200438546	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RASAL2-155	NM_170692	exon8	c.C1309T	p.R437C	AAATCACGTTTCC	.	107	29	145	0	.	1	0	1	0	0	4
PPFIA4	8497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	203025515	203025515	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPFIA4-230	NM_015053	exon5	c.C601A	p.R201R	GTGTCTCGGGAAG	.	147	118	262	1	.	0	0	0	0	0	4
KCNK2	3776	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	215408439	215408439	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNK2-90	NM_001017425	exon7	c.C1232T	p.T411M	GTTTGACGCCACA	.	46	36	87	1	.	11	0	11	0	0	3
ACBD3	64746	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	226342403	226342403	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACBD3-226	NM_022735	exon6	c.C1035T	p.S345S	TTTTTCGGAGCTG	.	150	134	194	0	.	12	0	12	0	0	4
PARP1	142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	226555191	226555191	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PARP1-727	NM_001618	exon17	c.C2396T	p.T799I	ATGTCAGTTTTGA	.	110	24	157	0	.	1	0	1	0	0	5
OBSCN	84033	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228509610	228509610	+	Missense_Mutation	SNP	C	C	T	rs182318410	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OBSCN-403	NM_001271223	exon66	c.C17939T	p.P5980L	AAAGTCCGGCTGA	.	44	32	68	1	C|0.997;T|0.003	3	0	3	0	0	3
SLC35F3	148641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	234367444	234367444	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC35F3-92	NM_173508	exon3	c.G565A	p.V189I	GGGCACGTCTGCA	.	216	172	338	0	.	1	0	1	0	0	5
NET1	10276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5498113	5498113	+	Missense_Mutation	SNP	C	C	T	rs139037982	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NET1-290	NM_001047160	exon11	c.C1261T	p.R421W	AACGAACGGCACT	.	103	46	69	0	C|1.000;T|0.000	11	5	6	0	0	5
TAF3	83860	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	8007680	8007682	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAF3-69	NM_031923	exon3	c.2207_2209del	p.736_737del	AAAAAGAGAAGGA	.	160	65	121	0	.	0	0	0	0	0	3
OTUD1	220213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	23729556	23729556	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OTUD1-433	NM_001145373	exon1	c.G1170C	p.V390V	GAATGTGAATATC	.	114	51	108	0	.	12	4	8	0	0	5
ARHGAP21	57584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	24873649	24873649	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGAP21-235	NM_020824	exon26	c.C5569T	p.R1857C	GTAGGCGTTCCCT	.	244	102	196	0	.	45	20	25	0	0	4
ERCC6	2074	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	50691492	50691492	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ERCC6-1153	NM_000124	exon9	c.T1892G	p.M631R	TCCTGCATCAATC	.	230	108	149	1	.	0	0	0	0	0	3
SGMS1	259230	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	52103641	52103641	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SGMS1-227	NM_147156	exon7	c.C234T	p.N78N	ATGGCCGTTCTTG	.	138	29	80	1	.	6	2	4	0	0	3
PCDH15	65217	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	55581863	55581863	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH15-193	NM_001142763	exon35	c.C5644A	p.P1882T	TCTGAGGGTCTGT	.	114	62	76	2	.	0	0	0	0	0	3
IPMK	253430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	59956132	59956132	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IPMK-228	NM_152230	exon6	c.C956T	p.A319V	TGACGCGCATACA	.	83	34	56	0	.	2	1	1	0	0	5
RUFY2	55680	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	70105818	70105820	+	In_Frame_Del	DEL	TTT	TTT	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TTT	TTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RUFY2-91	NM_017987	exon17	c.1726_1728del	p.576_576del	TGCTTCTTTGTCT	.	65	27	56	0	.	0	0	0	0	0	3
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70426853	70426853	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TET1-663	NM_030625	exon7	c.C4513T	p.R1505C	CGGCAGCGTACAG	.	138	59	109	0	.	0	0	0	0	0	5
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	73551036	73551036	+	Missense_Mutation	SNP	G	G	A	rs201887949	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH23-563	NM_022124	exon45	c.G6197A	p.R2066Q	ACAACCGGCCCAC	.	207	35	169	0	G|0.998;A|0.002	0	0	0	0	0	4
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73560424	73560424	+	Missense_Mutation	SNP	G	G	A	rs199903227	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH23-563	NM_022124	exon51	c.G7394A	p.R2465Q	TGGACCGGGAGAA	.	155	61	172	0	.	0	0	0	0	0	5
DLG5	9231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	79603319	79603319	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DLG5-98	NM_004747	exon6	c.G1010A	p.R337H	TCCAGGCGGCTCA	.	311	155	277	1	.	22	14	8	0	0	5
GRID1	2894	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	87675969	87675969	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRID1-142	NM_017551	exon5	c.G754A	p.D252N	GGCTGTCCTTGGA	.	65	31	55	1	.	2	1	1	0	0	3
GRID1	2894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	87898579	87898579	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRID1-142	NM_017551	exon4	c.C723T	p.N241N	TACCTCGTTGATG	.	170	81	130	0	.	0	0	0	0	0	5
HELLS	3070	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	96353307	96353307	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HELLS-92	NM_018063	exon18	c.C2023T	p.R675X	AGTACACGAGCTG	.	200	99	134	1	.	0	0	0	0	0	3
MORN4	118812	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	99376052	99376052	+	Missense_Mutation	SNP	C	C	T	rs150577682	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MORN4-90	NM_001098831	exon5	c.G409A	p.A137T	TGGAGGCGCTCTG	.	114	55	91	1	C|0.999;T|0.000	4	3	1	0	0	4
PI4K2A	55361	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	99426276	99426276	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PI4K2A-226	NM_018425	exon7	c.C1166G	p.S389W	AGATATCGGACCC	.	56	15	56	0	.	14	0	14	0	0	4
CNNM1	26507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	101124242	101124242	+	Silent	SNP	C	C	T	rs142898303	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNNM1-68	NM_020348	exon5	c.C2097T	p.G699G	CTATGGCGTCCCA	.	83	38	61	0	C|1.000;T|0.000	0	0	0	0	0	5
FBXW4	6468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103371420	103371420	+	Missense_Mutation	SNP	G	G	A	rs140286143	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXW4-226	NM_022039	exon8	c.C1084T	p.R362W	ACAGCCGTACAAC	.	206	82	204	0	G|1.000;A|0.000	122	56	66	0	0	5
C10orf76	79591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103716388	103716388	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C10orf76-90	NM_024541	exon22	c.C1671T	p.R557R	GTGCATGCGGATA	.	203	35	150	0	.	15	14	1	0	0	5
PDCD11	22984	ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105177645	105177645	+	Missense_Mutation	SNP	G	G	A	rs11598673	byfrequency;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDCD11-275	NM_014976	exon14	c.G1867A	p.A623T	GAGCCTGCAGGAC	.	279	134	223	2	G|0.954;T|0.046	3	2	1	0	0	3
COL17A1	1308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105803593	105803593	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL17A1-95	NM_000494	exon34	c.C2424T	p.I808I	AGTCACGATCTTG	.	209	93	189	0	.	0	0	0	0	0	5
VWA2	340706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	116049187	116049187	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VWA2-156	NM_001272046	exon12	c.C2061T	p.H687H	GATCCACGTGGCA	.	265	38	240	0	.	0	0	0	0	0	5
SEC23IP	11196	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	121691801	121691803	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AAG	AAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEC23IP-93	NM_007190	exon16	c.2729_2731del	p.910_911del	AGATCAAAGAAGA	.	109	32	83	0	.	0	0	0	0	0	3
PIDD	55367	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	800997	800997	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIDD-205	NM_145887	exon10	c.C1754T	p.T585I	AAGTGTGTGACCT	.	101	8	158	0	.	4	3	1	0	0	3
KRTAP5-5	439915	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1651190	1651190	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRTAP5-5-23	NM_001001480	exon1	c.C120T	p.S40S	TGGCTCCGGCTGT	.	147	119	36	2	.	0	0	0	0	0	3
OR56A3	390083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5969261	5969261	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR56A3-68	NM_001003443	exon1	c.G685T	p.V229L	CGAGCTGTGCTGA	.	90	71	96	0	.	0	0	0	0	0	5
FAM160A2	84067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6232915	6232915	+	Missense_Mutation	SNP	G	G	A	rs201012137	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM160A2-92	NM_032127	exon12	c.C2782T	p.R928C	CTTGGCGTTCAGG	.	54	9	78	0	G|1.000;A|0.000	11	8	3	0	0	4
TEAD1	7003	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	12923632	12923632	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TEAD1-90	NM_021961	exon10	c.845delA	p.Q282fs	GCCCTCAAAATGC	.	141	25	183	0	.	0	0	0	0	0	3
NAV2	89797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	19955447	19955447	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NAV2-96	NM_001244963	exon8	c.A1726G	p.K576E	AGTGCCAAGAAGG	.	24	20	32	0	.	0	0	0	0	0	5
TNKS1BP1	85456	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	57077118	57077119	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNKS1BP1-91	NM_033396	exon6	c.3066_3067del	p.1022_1023del	CGGATCCTCTCTC	.	52	36	65	0	.	0	0	0	0	0	3
SLC22A24	283238	ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62850786	62850786	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001136506	exon7	c.G1214A	p.R405H	ATTCGACGACCCA	.	153	129	175	2	.	0	0	0	0	0	3
LGALS12	85329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63276041	63276041	+	Missense_Mutation	SNP	C	C	T	rs144263194	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LGALS12-92	NM_001142535	exon2	c.C152T	p.T51M	ATGTCACGACGAT	.	70	56	139	0	C|1.000;T|0.000	0	0	0	0	0	5
LTBP3	4054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65319519	65319519	+	Silent	SNP	G	G	A	rs200551731	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LTBP3-91	NM_001130144	exon8	c.C1455T	p.D485D	TGGCCCGTCAGGG	.	132	110	185	1	G|1.000;A|0.000	27	3	24	0	0	5
RHOD	29984	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	66838933	66838933	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RHOD-659	NM_014578	exon5	c.G493A	p.A165T	GTGGGCGCGGTGG	.	76	6	40	0	.	0	0	0	0	0	3
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92616519	92616519	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAT3-73	NM_001008781	exon23	c.C12897T	p.C4299C	CGACTGCGACTCC	.	162	128	138	0	.	0	0	0	0	0	5
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	108138056	108138056	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATM-3419	NM_000051	exon17	c.C2625T	p.S875S	AGAGAGCCAAAGT	.	74	14	129	0	.	0	0	0	0	0	4
C11orf57	55216	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	111953573	111953576	+	Frame_Shift_Del	DEL	AAAG	AAAG	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AAAG	AAAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C11orf57-155	NM_001082969	exon6	c.759_762del	p.253_254del	AAGGAAAAAGAGA	.	22	19	31	0	.	0	0	0	0	0	3
TIMM8B	26521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	111956053	111956053	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TIMM8B-90	NM_012459	exon2	c.G263A	p.R88Q	GCAAACCGACTGG	.	96	81	148	1	.	106	6	99	1	0	4
CD3D	915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118210583	118210583	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CD3D-91	NM_000732	exon3	c.G313A	p.A105T	TGCCAGCCACGGT	.	161	134	235	0	.	6	6	0	0	0	5
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6230433	6230433	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VWF-163	NM_000552	exon3	c.G127A	p.V43I	TGTTGACGAAGTC	.	266	131	225	0	.	2	2	0	0	0	5
PLEKHG6	55200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6424203	6424203	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLEKHG6-295	NM_001144856	exon4	c.G327A	p.R109R	GGTGAGGCTGCAC	.	184	77	148	1	.	0	0	0	0	0	3
KIAA1467	57613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	13229066	13229066	+	Missense_Mutation	SNP	C	C	T	rs142863695	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1467-92	NM_020853	exon11	c.C1631T	p.T544M	CAGTGACGGCTTC	.	186	84	174	0	C|0.999;T|0.001	0	0	0	0	0	5
CCNT1	904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49086936	49086936	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCNT1-418	NM_001240	exon9	c.T2061C	p.Y687Y	GTCACTATAAGGA	.	226	84	149	0	.	5	4	1	0	0	5
ADCY6	112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49170332	49170332	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADCY6-90	NM_020983	exon7	c.C1414T	p.R472C	CCACGCGCATGTT	.	95	37	85	0	.	11	7	4	0	0	5
FKBP11	51303	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49318027	49318028	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FKBP11-226	NM_016594	exon4	c.295_296del	p.99_99del	AGAAGACTCTGCT	.	158	69	121	0	.	0	0	0	0	0	3
KRT71	112802	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52946699	52946699	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRT71-92	NM_033448	exon1	c.C163T	p.R55W	GGCTCCGGACACC	.	96	9	70	1	.	0	0	0	0	0	3
KRT76	51350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53170942	53170942	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRT76-154	NM_015848	exon1	c.G134A	p.G45D	CTGAAGCCACAGG	.	124	56	124	0	.	0	0	0	0	0	5
SOAT2	8435	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	53497419	53497419	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SOAT2-91	NM_003578	exon1	c.C58T	p.R20W	GGGGAGCGGGAGC	.	101	8	40	0	.	0	0	0	0	0	3
MAP3K12	7786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53876621	53876621	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAP3K12-604	NM_001193511	exon11	c.C1966T	p.R656W	CCCCCCGGCCCCG	.	54	8	26	0	.	17	12	5	0	0	4
NACA	4666	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	57113563	57113564	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NACA-254	NM_001113203	exon3	c.1750_1751del	p.584_584del	GGAGAAAGAGGTA	.	104	42	82	0	.	0	0	0	0	0	3
TAC3	6866	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	57409529	57409530	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAC3-92	NM_013251	exon2	c.52_53del	p.18_18del	CCAAAGCTCTGAG	.	111	52	88	0	.	0	0	0	0	0	3
KIF5A	3798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57963112	57963112	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF5A-517	NM_004984	exon10	c.C893T	p.T298M	GCCGGACGACTAT	.	156	69	120	0	.	1	0	1	0	0	5
BEST3	144453	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	70049362	70049362	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BEST3-248	NM_032735	exon10	c.1332delC	p.P444fs	GGCCCTGGGGGGG	.	59	17	46	0	.	0	0	0	0	0	3
CEP290	80184	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	88508192	88508210	+	Frame_Shift_Del	DEL	CTTACATTAACTAGTCTTT	CTTACATTAACTAGTCTTT	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CTTACATTAACTAGTCTTT	CTTACATTAACTAGTCTTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CEP290-96	NM_025114	exon20	c.2039_2052del	p.680_684del	AAATAACTTACAT	.	41	9	40	0	.	0	0	0	0	0	3
GNPTAB	79158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	102158675	102158675	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GNPTAB-92	NM_024312	exon13	c.C2020T	p.R674C	GGAAGCGTTTTTC	.	35	16	23	0	.	3	1	2	0	0	5
P2RX7	5027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	121622497	121622497	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	P2RX7-268	NM_002562	exon13	c.C1680A	p.S560S	CGGCTCCCAGGAC	.	132	41	184	0	.	4	3	1	0	0	5
KNTC1	9735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123089580	123089580	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KNTC1-543	NM_014708	exon50	c.G5332A	p.E1778K	CTCTACGAACATC	.	95	50	89	0	.	4	1	3	0	0	5
ARL6IP4	51329	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	123466588	123466588	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARL6IP4-90	NM_018694	exon4	c.G923A	p.R308H	TCATCCGCAAGGT	.	114	12	167	0	.	404	356	47	0	1	3
RIMBP2	23504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130912861	130912861	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RIMBP2-142	NM_015347	exon12	c.G2224A	p.E742K	GGTACTCGTCTCC	.	74	68	106	0	.	5	0	5	0	0	5
EP400	57634	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	132504663	132504663	+	Silent	SNP	G	G	A	rs150248915	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EP400-520	NM_015409	exon22	c.G4347A	p.P1449P	TCACCCGCCCCGG	.	80	62	22	0	G|0.999;A|0.001	11	0	11	0	0	4
ATP12A	479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25262636	25262636	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP12A-137	NM_001185085	exon4	c.C408T	p.S136S	CTCCAGCGACAAG	.	37	32	62	0	.	0	0	0	0	0	5
AMER2	219287	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25744555	25744555	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_152704	exon1	c.C1203T	p.P401P	TGGCCCGGGGACA	.	91	73	118	1	.	0	0	0	0	0	4
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	39264775	39264775	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FREM2-100	NM_207361	exon1	c.G3294T	p.L1098L	CTCCCTGAATGAT	.	22	6	40	0	.	0	0	0	0	0	4
LHFP	10186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39952603	39952603	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LHFP-683	NM_005780	exon3	c.G446A	p.R149Q	GTCTGCCGGACTT	.	61	46	80	0	.	12	8	4	0	0	5
SCEL	8796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	78211275	78211275	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCEL-95	NM_144777	exon30	c.A1784T	p.Y595F	ATGGATATCAGGA	.	42	7	39	0	.	0	0	0	0	0	4
ABCC4	10257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	95830011	95830011	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCC4-515	NM_005845	exon13	c.C1677T	p.D559D	AGGATCGTCCAGG	.	127	35	172	0	.	0	0	0	0	0	5
OR4Q3	441669	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	20216029	20216029	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4Q3-71	NM_172194	exon1	c.C443T	p.A148V	TTCTTGCCTGCTG	.	342	26	508	0	.	0	0	0	0	0	3
OR4K2	390431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20345046	20345046	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4K2-72	NM_001005501	exon1	c.C620T	p.A207V	TAATTGCGTTGTC	.	206	57	254	0	.	0	0	0	0	0	5
CMA1	1215	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24976583	24976583	+	Missense_Mutation	SNP	G	G	A	rs13306251	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CMA1-90	NM_001836	exon2	c.C188T	p.T63M	GCAGCCGTCAGCA	.	101	75	109	1	G|0.163;T|0.000	0	0	0	0	0	4
MIS18BP1	55320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	45675328	45675328	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MIS18BP1-90	NM_018353	exon15	c.A3198T	p.K1066N	ATTACTTTTATGA	.	182	145	242	1	.	17	1	16	0	0	4
ELMSAN1	91748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74193665	74193665	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_194278	exon6	c.G2173A	p.V725M	AGCCCACGTTGAT	.	137	40	283	0	.	3	2	1	0	0	5
VSX2	338917	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	74711911	74711911	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VSX2-69	NM_182894	exon3	c.T499G	p.F167V	AAGGCATTCAACG	.	112	9	142	0	.	0	0	0	0	0	3
TDP1	55775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	90450919	90450919	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TDP1-92	NM_018319	exon9	c.C944T	p.S315L	GAGAGTCGCCAAC	.	37	30	52	0	.	1	0	1	0	0	5
TDRD9	122402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104481118	104481118	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TDRD9-70	NM_153046	exon21	c.T2163C	p.V721V	GCATGTTGATTCT	.	48	39	57	0	.	0	0	0	0	0	5
FMN1	342184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	33358991	33358991	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FMN1-23	NM_001103184	exon1	c.G1095A	p.S365S	CCTGGGCGACTCA	.	72	10	124	0	.	0	0	0	0	0	4
JMJD7-PLA2G4B	8681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42137956	42137956	+	Missense_Mutation	SNP	G	G	A	rs150220260	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	JMJD7-PLA2G4B-135	NM_005090	exon20	c.G2171A	p.R724H	AGTCCCGCATCTG	.	35	26	65	0	G|1.000;A|0.000	17	1	16	0	0	5
DENND4A	10260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65995235	65995235	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DENND4A-229	NM_001144823	exon16	c.G2199A	p.L733L	CATGGGCAAAGGG	.	34	31	67	0	.	4	0	4	0	0	5
FBXO22	26263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	76225297	76225297	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXO22-658	NM_147188	exon7	c.G1066A	p.G356S	TTATTCGGCTTCT	.	98	23	98	0	.	27	24	3	0	0	5
C15orf40	123207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83679055	83679055	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C15orf40-91	NM_001160116	exon2	c.G172A	p.D58N	TAGGATCAACTGC	.	183	153	262	0	.	4	0	4	0	0	5
ALPK3	57538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	85360157	85360157	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALPK3-337	NM_020778	exon1	c.C80T	p.P27L	TGGTGCCAGGAAG	.	220	21	212	0	.	0	0	0	0	0	4
ADAMTS17	170691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	100594247	100594247	+	Missense_Mutation	SNP	G	G	A	rs143817747	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS17-228	NM_139057	exon16	c.C2150T	p.S717L	TTACCCGAGTCTT	.	57	43	65	0	G|0.999;A|0.001	0	0	0	0	0	5
OR4F15	390649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	102358851	102358851	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4F15-68	NM_001001674	exon1	c.C462T	p.I154I	CCTTATCCACTCA	.	187	53	247	0	.	0	0	0	0	0	5
ITFG3	83986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	314146	314146	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITFG3-90	NM_032039	exon11	c.C1320T	p.H440H	CCTCCACGAGCTG	.	28	23	36	0	.	19	1	18	0	0	5
JMJD8	339123	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	732820	732820	+	Missense_Mutation	SNP	C	C	T	rs113649865	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	JMJD8-67	NM_001005920	exon9	c.G832A	p.V278I	TGAAGACGCTGGT	.	144	122	238	2	C|0.999;T|0.001	60	2	58	0	0	3
PRSS41	360226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2854956	2854956	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001135086	exon5	c.G780C	p.L260L	TGGACTGTGGTAT	.	229	174	445	0	.	0	0	0	0	0	5
PKMYT1	9088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3024609	3024609	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKMYT1-765	NM_182687	exon5	c.C921T	p.H307H	CCCACCGTGGGGC	.	162	122	277	1	.	23	2	21	0	0	5
ZNF263	10127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3340332	3340332	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF263-94	NM_005741	exon6	c.G1826T	p.G609V	TTTGTGGGGAAAA	.	60	13	95	0	.	7	4	3	0	0	5
ERCC4	2072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	14041727	14041727	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ERCC4-665	NM_005236	exon11	c.G2274A	p.L758L	GCTTCTGATTGAG	.	79	8	76	0	.	0	0	0	0	0	3
ABCC1	4363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	16184382	16184382	+	Missense_Mutation	SNP	G	G	A	rs45517537	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCC1-94	NM_004996	exon19	c.G2581A	p.A861T	GACGGCGCCTTCG	.	64	54	130	0	G|1.000;A|0.000	11	2	9	0	0	5
COG7	91949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	23415033	23415033	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COG7-90	NM_153603	exon13	c.G1785A	p.L595L	AATAAGCAACAGC	.	139	14	191	0	.	15	13	2	0	0	4
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	29997670	29997670	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAOK2-521	NM_004783	exon16	c.C2077T	p.R693W	GAGCTGCGGCAGC	.	88	6	30	0	.	44	42	2	0	0	3
PRR14	78994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30664048	30664048	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRR14-90	NM_024031	exon4	c.G199A	p.V67M	GTCCCCGTGGTGC	.	175	47	242	0	.	0	0	0	0	0	5
ZNF646	9726	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31091261	31091261	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF646-153	NM_014699	exon2	c.G3616A	p.E1206K	AGCTGCGAGGTGT	.	152	26	218	1	.	6	5	1	0	0	4
ARMC5	79798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31473937	31473937	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARMC5-24	NM_024742	exon3	c.C1069T	p.R357C	CTATGTCGTGAGG	.	39	34	67	0	.	7	0	7	0	0	5
PHKB	5257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	47697593	47697593	+	Missense_Mutation	SNP	G	G	A	rs56010117	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHKB-154	NM_000293	exon24	c.G2284A	p.V762I	GGTACCGTTTCTG	.	50	33	68	0	G|0.999;A|0.001	0	0	0	0	0	5
NKD1	85407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	50667165	50667165	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NKD1-226	NM_033119	exon10	c.C886T	p.R296C	CGATCTCGCTCCC	.	221	181	312	1	.	30	0	30	0	0	5
DOK4	55715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57507532	57507532	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DOK4-227	NM_018110	exon8	c.C855T	p.S285S	AGCATAGCTGGAG	.	156	35	224	0	.	3	3	0	0	0	5
CDH8	1006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	61761065	61761065	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH8-161	NM_001796	exon9	c.A1469G	p.N490S	TTGTCATTGACAT	.	131	105	161	1	.	0	0	0	0	0	4
LRRC36	55282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67380244	67380244	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC36-90	NM_018296	exon3	c.C284T	p.P95L	TACAACCGTTACC	.	72	59	110	0	.	0	0	0	0	0	5
C16orf86	388284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67701268	67701268	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001012984	exon2	c.C172T	p.R58C	GACCAGCGCCCAG	.	156	135	193	1	.	1	0	1	0	0	5
VPS4A	27183	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	69352767	69352767	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_013245	exon5	c.G385A	p.V129M	AACGACGTGGCCG	.	48	38	64	0	.	30	0	30	0	0	4
MBTPS1	8720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	84092913	84092913	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MBTPS1-92	NM_003791	exon21	c.C2825T	p.A942V	CTGGGCGCCGTCT	.	105	15	155	0	.	1	1	0	0	0	4
IL17C	27189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	88706470	88706470	+	Missense_Mutation	SNP	G	G	A	rs189692693	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IL17C-90	NM_013278	exon3	c.G584A	p.R195H	TGCCCCGTTCAGT	.	92	10	115	0	G|0.999;A|0.000	0	0	0	0	0	4
CDT1	81620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	88873021	88873021	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDT1-227	NM_030928	exon7	c.C1061T	p.T354M	CCGCCACGGAGAA	.	218	59	99	0	.	18	12	6	0	0	5
DEF8	54849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	90021667	90021667	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DEF8-68	NM_207514	exon4	c.G398A	p.R133H	TCTCCCGCCCTGT	.	120	13	189	0	.	0	0	0	0	0	4
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3954155	3954155	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZZEF1-93	NM_015113	exon36	c.C5783T	p.T1928M	CTGCGCGTCTGGG	.	94	72	110	0	.	4	0	4	0	0	5
ANKFY1	51479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4071191	4071191	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKFY1-93	NM_001257999	exon25	c.G3518A	p.R1173H	AGAAGACGTCCGC	.	49	5	70	0	.	8	7	1	0	0	4
SPNS3	201305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4348462	4348462	+	Missense_Mutation	SNP	G	G	C	rs141797761	unknown;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPNS3-153	NM_182538	exon3	c.G401C	p.R134P	CCCCCCGGGTACG	.	93	83	176	1	G|1.000;A|0.000	0	0	0	0	0	5
NLRP1	22861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	5436698	5436698	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRP1-274	NM_014922	exon10	c.C3059T	p.A1020V	GAAGCCGCCCTCT	.	28	25	33	0	.	0	0	0	0	0	5
KIAA0753	9851	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	6502594	6502594	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA0753-90	NM_014804	exon14	c.C2135T	p.S712L	ACTGACGAGCCAT	.	90	6	111	0	.	6	6	0	0	0	3
NEURL4	84461	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	7224496	7224496	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NEURL4-46	NM_032442	exon20	c.T3295C	p.S1099P	TGGGGGAAGGAGG	.	113	20	229	0	.	10	6	4	0	0	4
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TP53-70225	NM_000546	exon6	c.C637T	p.R213X	TATGTCGAAAAGT	.	132	112	188	0	.	1	0	1	0	0	5
KDM6B	23135	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	7752034	7752034	+	Missense_Mutation	SNP	G	G	A	rs148573983	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KDM6B-205	NM_001080424	exon11	c.G2428A	p.V810M	GCCTCCGTGCTGG	.	61	48	105	0	G|1.000;A|0.000	3	0	3	0	0	4
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18054476	18054476	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO15A-97	NM_016239	exon38	c.C7526T	p.A2509V	CCCCTGCCAAACC	.	72	57	92	0	.	0	0	0	0	0	5
SLC13A2	9058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26800779	26800779	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC13A2-90	NM_001145975	exon1	c.G49A	p.V17M	CTGATCGTGTTCT	.	92	17	161	0	.	0	0	0	0	0	5
SPAG5	10615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26919548	26919548	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPAG5-90	NM_006461	exon3	c.C714T	p.N238N	GAAGGCGTTACTT	.	71	58	119	0	.	6	0	6	0	0	5
EFCAB5	374786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	28405430	28405430	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EFCAB5-70	NM_198529	exon15	c.C2935T	p.R979W	GCCAGGCGGAAAT	.	171	147	192	0	.	0	0	0	0	0	5
ATAD5	79915	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	29204542	29204542	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATAD5-93	NM_024857	exon16	c.C3893T	p.A1298V	AAAATGCAACATC	.	89	71	170	2	.	0	0	0	0	0	3
RFFL	117584	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33338994	33338994	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RFFL-90	NM_001017368	exon7	c.G1085A	p.R362Q	CAGGACCGGAAGA	.	129	25	152	1	.	4	2	2	0	0	4
GSDMA	284110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38130530	38130530	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GSDMA-90	NM_178171	exon9	c.C756T	p.D252D	AGGGGACGTACAC	.	76	61	114	0	.	0	0	0	0	0	5
TNS4	84951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38633890	38633890	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNS4-155	NM_032865	exon13	c.C2098A	p.Q700K	TGACCTGCGAGGC	.	95	79	156	0	.	0	0	0	0	0	5
MLX	6945	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	40720854	40720856	+	Frame_Shift_Del	DEL	GAT	GAT	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	GAT	GAT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLX-90	NM_170607	exon4	c.332_333del	p.111_111del	AGCGTAGATGATG	.	165	131	304	0	.	0	0	0	0	0	3
WNT3	7473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	44846089	44846089	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WNT3-522	NM_030753	exon4	c.A665A	p.Q222Q	TGCGCCCACCAGC	.	137	99	201	1	.	11	0	11	0	0	5
CLTC	1213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	57754463	57754463	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLTC-835	NM_004859	exon17	c.G2710A	p.V904I	AGTCGCGTTGTTG	.	110	89	142	1	.	19	1	18	0	0	5
KCNH6	81033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	61621675	61621675	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNH6-91	NM_030779	exon12	c.2407delC	p.P803fs	GAAATGCCCCCAA	.	65	49	120	0	.	0	0	0	0	0	3
DDX42	11325	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	61895428	61895428	+	Silent	SNP	C	C	T	rs145932119	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DDX42-230	NM_203499	exon18	c.C2487T	p.S829S	GCATAGCGATAGT	.	80	9	85	0	C|1.000;T|0.000	44	43	1	0	0	3
TEX2	55852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	62271012	62271012	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TEX2-91	NM_018469	exon4	c.C2083T	p.R695X	TTTCTCGGCCAGT	.	115	96	168	1	.	0	0	0	0	0	4
ARSG	22901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	66391298	66391298	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARSG-91	NM_001267727	exon10	c.C1176T	p.S392S	CGTCTCCGAGGTG	.	104	83	168	0	.	2	1	1	0	0	5
CPSF4L	642843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	71257098	71257098	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CPSF4L-68	NM_001129885	exon2	c.T128C	p.F43S	GTGAAGAAGTTGC	.	41	35	104	0	.	0	0	0	0	0	5
GRIN2C	2905	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	72838754	72838754	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRIN2C-228	NM_000835	exon13	c.C3522T	p.H1174H	GGAGCCGTGGCTG	.	90	22	82	0	.	11	7	4	0	0	4
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76424720	76424720	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH17-142	NM_173628	exon77	c.C12474T	p.N4158N	CTCTGCGTTGGGG	.	122	34	226	0	.	1	1	0	0	0	5
SGSH	6448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78188920	78188920	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SGSH-91	NM_000199	exon3	c.C267T	p.Y89Y	CAGCCCGTACATC	.	52	48	58	0	.	9	1	8	0	0	5
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	6997824	6997824	+	Missense_Mutation	SNP	C	C	T	rs150510890	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LAMA1-149	NM_005559	exon33	c.G4723A	p.V1575I	AAAGAACGGCATC	.	110	34	117	0	C|1.000;T|0.000	0	0	0	0	0	4
CDH2	1000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	25582999	25582999	+	Missense_Mutation	SNP	C	C	A	rs202045628	unknown;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH2-525	NM_001792	exon7	c.G982T	p.G328C	TGTCACCAGTCTC	.	173	145	271	1	.	5	0	5	0	0	4
CCDC178	374864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	30672841	30672841	+	Missense_Mutation	SNP	G	G	A	rs148945908	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001105528	exon20	c.C2272T	p.R758C	CTAAACGCAGATT	.	43	33	89	0	G|1.000;A|0.000	0	0	0	0	0	5
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	31250678	31250678	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASXL3-49	NM_030632	exon6	c.G519A	p.M173I	CTCAATGATGGTA	.	87	74	141	1	.	0	0	0	0	0	4
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	31324011	31324011	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASXL3-49	NM_030632	exon12	c.C4199G	p.S1400C	GTGATTCTGTAGC	.	137	8	150	0	.	0	0	0	0	0	3
SLC14A1	6563	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	43319234	43319234	+	Missense_Mutation	SNP	G	G	A	rs201451018	unknown;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC14A1-515	NM_001146037	exon6	c.G938A	p.C313Y	TCATGTGCCTGCA	.	88	8	145	0	G|0.999;T|0.001	0	0	0	0	0	3
LOXHD1	125336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	44181267	44181267	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_144612	exon8	c.C1047T	p.I349I	CAGCTCGATGTGG	.	91	51	117	0	.	0	0	0	0	0	5
CXXC1	30827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	47809921	47809921	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CXXC1-131	NM_001101654	exon12	c.C1550T	p.T517M	AAGGACGTCTGGC	.	144	109	267	1	.	20	2	18	0	0	4
NEDD4L	23327	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	56063446	56063446	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NEDD4L-658	NM_001144967	exon31	c.G2873A	p.R958Q	ATTTACGAGAGAA	.	45	32	74	1	.	12	1	11	0	0	3
TNFRSF11A	8792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	60017106	60017106	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNFRSF11A-659	NM_001270951	exon3	c.G219A	p.P73P	TGGCCCGGATGAA	.	68	59	105	0	.	0	0	0	0	0	5
SERPINB2	5055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61564454	61564454	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SERPINB2-226	NM_002575	exon4	c.417+1G>A	.	CGGGAAGTAAGTG	.	35	24	43	0	.	0	0	0	0	0	5
ZNF407	55628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	72347651	72347651	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF407-92	NM_001146190	exon1	c.G4676A	p.R1559H	ACATTCGCACTCA	.	201	171	110	0	.	0	0	0	0	0	5
ATP8B3	148229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1796766	1796766	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_138813	exon16	c.G1697A	p.R566H	AGCAGGCGCCAGA	.	114	101	46	0	.	0	0	0	0	0	5
TBXA2R	6915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	3595765	3595765	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBXA2R-90	NM_201636	exon3	c.G953A	p.R318H	TGGAGACGCCGGA	.	182	66	76	0	.	8	6	2	0	0	4
PLIN3	10226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4839518	4839518	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLIN3-90	NM_005817	exon8	c.C991T	p.R331W	TGTCCCGGAACAT	.	89	69	132	1	.	84	3	81	0	0	4
PTPRS	5802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	5244045	5244045	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPRS-357	NM_002850	exon11	c.C1437T	p.N479N	GTCCACGTTGTGC	.	61	47	46	0	.	1	0	1	0	0	5
ARHGEF18	23370	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	7529570	7529576	+	Frame_Shift_Del	DEL	GCAGGTG	GCAGGTG	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	GCAGGTG	GCAGGTG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGEF18-228	NM_001130955	exon13	c.2334_2340del	p.778_780del	ATCGCCGCAGGTG	.	194	29	142	0	.	0	0	0	0	0	3
FBN3	84467	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8203066	8203066	+	Missense_Mutation	SNP	G	G	A	rs141919495	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBN3-100	NM_032447	exon9	c.C1160T	p.A387V	CCACGCGCATCAG	.	162	93	90	1	G|1.000;A|0.000	0	0	0	0	0	3
RAB11B	9230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8464942	8464942	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAB11B-227	NM_004218	exon2	c.C236T	p.A79V	CCTCCGCGTGCGT	.	574	210	92	0	.	0	0	0	0	0	5
PIN1	5300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9959811	9959811	+	Missense_Mutation	SNP	C	C	T	rs112773610	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIN1-227	NM_006221	exon4	c.C428T	p.T143M	TGCGGACGGGGGA	.	128	76	54	0	C|0.500;T|0.500	165	61	104	0	0	5
ILF3	3609	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	10798173	10798173	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ILF3-93	NM_017620	exon18	c.C2223T	p.H741H	GCCGCACGGGGGC	.	279	166	166	0	.	134	53	80	0	1	4
LDLR	3949	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	11218155	11218155	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LDLR-94	NM_001195798	exon6	c.G905T	p.C302F	GAGACTGCCGGGA	.	351	22	253	0	.	78	75	3	0	0	3
ZNF563	147837	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	12429665	12429665	+	Missense_Mutation	SNP	G	G	A	rs201356487	unknown;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF563-90	NM_145276	exon4	c.C1174T	p.P392S	TATGAGGTCCACC	.	287	15	148	0	G|1.000;T|0.000	13	11	2	0	0	3
ASNA1	439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12858083	12858083	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASNA1-92	NM_004317	exon5	c.G682A	p.V228I	CTGCCCGTCATCC	.	201	53	119	0	.	252	180	72	0	0	5
HOOK2	29911	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	12881872	12881872	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HOOK2-92	NM_001100176	exon10	c.G776T	p.R259M	TCCTCCCTGCCAC	.	215	21	118	0	.	10	6	4	0	0	3
MAST1	22983	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12980051	12980051	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAST1-523	NM_014975	exon22	c.G2945A	p.R982H	CACTGCGTGCCAT	.	283	99	162	1	.	0	0	0	0	0	3
FARSA	2193	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13035057	13035057	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FARSA-91	NM_004461	exon12	c.C1296T	p.V432V	GTTTCCGACCTCC	.	188	65	105	1	.	161	110	51	0	0	4
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	15292567	15292567	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOTCH3-855	NM_000435	exon17	c.T2612C	p.F871S	CAGGAAAAGGAGC	.	422	31	83	0	.	1	1	0	0	0	3
BRD4	23476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15355539	15355539	+	Silent	SNP	G	G	A	rs201923211	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BRD4-767	NM_058243	exon12	c.C2193T	p.P731P	CCTCCCGGGGTGC	.	213	72	123	0	.	23	14	9	0	0	5
JAK3	3718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	17945987	17945987	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	JAK3-2418	NM_000215	exon15	c.G1952A	p.R651Q	ACCTTCCGGGCAG	.	145	13	85	0	.	6	6	0	0	0	3
ATP13A1	57130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19770410	19770410	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP13A1-138	NM_020410	exon3	c.A677C	p.K226T	ACTCACTTGTTGC	.	192	23	94	0	.	0	0	0	0	0	4
PLEKHF1	79156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	30165469	30165469	+	Silent	SNP	G	G	A	rs143273878	byfrequency;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLEKHF1-226	NM_024310	exon2	c.G723A	p.A241A	CGGAGCGTCCAGT	.	89	25	35	0	G|0.999;T|0.001	8	4	4	0	0	5
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	31769263	31769263	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TSHZ3-232	NM_020856	exon2	c.C1436T	p.A479V	GTGACCGCTTTCT	.	155	25	107	0	.	3	3	0	0	0	5
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	36218685	36218686	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLL4-697	NM_014727	exon17	c.4389_4390del	p.1463_1464del	CAAGTCTGTGGTG	.	264	39	259	0	.	0	0	0	0	0	3
MLL4	8085	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36229230	36229230	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLL4-697	NM_014727	exon37	c.C7920T	p.D2640D	AGTGGACGCCACG	.	229	84	161	2	.	116	60	56	0	0	3
KIRREL2	84063	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	36357214	36357214	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIRREL2-93	NM_199180	exon15	c.1947delC	p.V649fs	CATGGTCCCCCCC	.	32	18	31	0	.	0	0	0	0	0	3
ZNF793	390927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	38028650	38028650	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF793-68	NM_001013659	exon8	c.G1090C	p.E364Q	ACAGGAGAGAAGC	.	95	9	66	0	.	1	1	0	0	0	3
SPINT2	10653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38780794	38780794	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPINT2-90	NM_021102	exon5	c.C427T	p.R143C	CCTTGCCGTGCAT	.	172	99	198	0	.	32	22	10	0	0	5
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39018344	39018344	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RYR1-100	NM_000540	exon73	c.C10744T	p.R3582C	CCGGGTCGCGAGG	.	244	119	237	1	.	0	0	0	0	0	5
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	40368454	40368454	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FCGBP-98	NM_003890	exon28	c.G12894A	p.V4298V	AGGTGGCACATGA	.	399	56	360	0	.	0	0	0	0	0	4
LTBP4	8425	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41132999	41132999	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LTBP4-93	.	.	.	.	GGCCTCCCATATG	.	105	43	95	0	.	60	31	29	0	0	4
GRIK5	2901	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	42525580	42525580	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRIK5-90	NM_002088	exon14	c.C1744T	p.R582C	GGGGGCGTGCCCG	.	74	6	61	0	.	16	15	1	0	0	3
LIPE	3991	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	42914843	42914843	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LIPE-154	NM_005357	exon2	c.G1035A	p.A345A	CCCCAGCGCCTGC	.	171	39	37	0	.	6	5	1	0	0	4
PSG6	5675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43411758	43411758	+	Missense_Mutation	SNP	G	G	A	rs200244036	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PSG6-92	NM_001031850	exon4	c.C955T	p.R319C	TACTGCGGATGCC	.	156	65	137	0	.	0	0	0	0	0	5
PVR	5817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45157249	45157249	+	Missense_Mutation	SNP	C	C	T	rs3745145	unknown;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PVR-90	NM_001135769	exon4	c.C805T	p.R269C	GATGCTCGCAGCA	.	87	50	71	0	C|0.161;G|0.839	48	23	25	0	0	5
GPR4	2828	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46094248	46094248	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR4-92	NM_005282	exon2	c.G877A	p.A293T	TGCGGGCGCCCTC	.	163	79	127	1	.	58	43	15	0	0	4
STRN4	29888	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	47236402	47236402	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STRN4-90	NM_001039877	exon5	c.G631A	p.G211R	CTGCCCCGTTGAG	.	73	6	41	0	.	40	38	2	0	0	3
ARHGAP35	2909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47423998	47423998	+	Missense_Mutation	SNP	G	G	A	rs142807428	by1000genomes	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_004491	exon1	c.G2066A	p.R689Q	GCCGGCGGGATAA	.	119	51	64	0	G|0.999;A|0.000	5	2	3	0	0	5
FAM83E	54854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	49107038	49107038	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM83E-91	NM_017708	exon4	c.889delC	p.Q297fs	GTTTCTGGGGGGG	.	117	57	71	0	.	0	0	0	0	0	3
RASIP1	54922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49238683	49238683	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RASIP1-228	NM_017805	exon4	c.C949T	p.R317C	CTGAGCGCTCCTT	.	189	92	50	0	.	29	18	11	0	0	5
FUZ	80199	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	50311889	50311889	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FUZ-90	NM_025129	exon9	c.G900C	p.L300L	GAGGAGCAGCAGC	.	122	66	83	0	.	2	0	2	0	0	4
LILRB4	11006	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55177714	55177714	+	Missense_Mutation	SNP	C	C	T	rs201125273	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LILRB4-93	NM_006847	exon8	c.C898T	p.R300C	TTCCAACGTCCTC	.	136	62	140	0	C|0.997;T|0.003	4	4	0	0	0	4
NLRP2	55655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55494012	55494012	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRP2-120	NM_017852	exon6	c.G946A	p.V316I	GTGCCCGTCCTCC	.	129	53	88	0	.	0	0	0	0	0	5
ZNF470	388566	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	57088962	57088964	+	In_Frame_Del	DEL	TAT	TAT	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TAT	TAT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF470-92	NM_001001668	exon6	c.1165_1167del	p.389_389del	CGGCGATATTATC	.	161	57	104	0	.	0	0	0	0	0	3
PEG3	5178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57328441	57328441	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PEG3-164	NM_001146184	exon9	c.T1369C	p.C457R	TCCCACACTCATC	.	398	193	321	1	.	7	0	7	0	0	4
ZNF419	79744	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	58002904	58002904	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF419-90	NM_001098494	exon3	c.C141T	p.D47D	TGATGACGCTCAG	.	379	122	268	0	.	9	7	2	0	0	3
ZBTB45	84878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	59028363	59028363	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZBTB45-90	NM_032792	exon2	c.C678T	p.G226G	TGGGCCGCCACCT	.	224	29	158	0	.	10	8	2	0	0	4
TPO	7173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	1520736	1520736	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TPO-332	NM_001206744	exon15	c.C2600T	p.S867L	TCACCTCGACGGT	.	70	57	122	1	.	0	0	0	0	0	4
LPIN1	23175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	11960588	11960588	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LPIN1-156	NM_001261428	exon21	c.G2716A	p.V906I	TTTACCGTCAACC	.	100	75	134	1	.	6	0	6	0	0	5
EFR3B	22979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	25366724	25366724	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_014971	exon18	c.G2043T	p.Q681H	TCCTCAGCTGACA	.	84	69	117	0	.	0	0	0	0	0	5
SLC30A6	55676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32396391	32396391	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC30A6-90	NM_001193513	exon2	c.C39T	p.S13S	AAGATCCTTTTTT	.	98	42	165	0	.	1	0	1	0	0	5
MSH2	4436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	47707899	47707900	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MSH2-2445	NM_000251	exon15	c.2523_2524del	p.841_842del	TGTAATAGAGTGT	.	112	91	155	0	.	0	0	0	0	0	3
XPO1	7514	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	61729431	61729431	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	XPO1-229	NM_003400	exon5	c.G316A	p.V106I	CAACAACGTATTT	.	89	6	111	0	.	43	43	0	0	0	3
ARHGAP25	9938	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	69049670	69049670	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGAP25-274	NM_001007231	exon10	c.1399delA	p.K467fs	ATCTTTAAAAATG	.	110	34	161	0	.	0	0	0	0	0	3
STAMBP	10617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74058012	74058012	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STAMBP-524	NM_006463	exon3	c.C29T	p.P10L	GCCTCCCGCCCGA	.	77	65	99	0	.	19	0	19	0	0	5
LOXL3	84695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74763595	74763595	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LOXL3-226	NM_032603	exon6	c.C916T	p.R306C	GGACACGGGCCTA	.	60	50	83	0	.	0	0	0	0	0	5
GNLY	10578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	85922477	85922477	+	Silent	SNP	C	C	T	rs201139886	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GNLY-90	NM_006433	exon2	c.C87T	p.Y29Y	GTACTACGACCTG	.	145	128	196	0	C|0.999;T|0.000	1	0	1	0	0	5
GNLY	10578	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	85924745	85924745	+	Silent	SNP	C	C	T	rs147680816	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GNLY-90	NM_006433	exon4	c.C372T	p.A124A	CGTGGCCGGAGAA	.	118	103	132	2	C|1.000;T|0.000	3	3	0	0	0	3
GCC2	9648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	109124031	109124031	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GCC2-91	NM_181453	exon23	c.C5000T	p.A1667V	AAAATGCTTCCCG	.	228	191	381	1	.	1	0	1	0	0	5
EN1	2019	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	119600797	119600799	+	In_Frame_Del	DEL	TTC	TTC	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TTC	TTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EN1-154	NM_001426	exon2	c.894_896del	p.298_299del	TTCTCGTTCTTCT	.	30	19	52	0	.	0	0	0	0	0	3
UGGT1	56886	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128945079	128945079	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UGGT1-91	NM_020120	exon40	c.G4533A	p.P1511P	TGTCCCGGAGTGG	.	252	45	312	1	.	18	16	2	0	0	4
SLC4A10	57282	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	162813676	162813676	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC4A10-229	NM_001178015	exon20	c.C2719T	p.R907W	GGCATTCGGGAGC	.	110	10	116	0	.	0	0	0	0	0	3
MYO3B	140469	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	171509587	171509587	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO3B-530	NM_138995	exon35	c.3982delT	p.F1328fs	CCTTCCTTTTTTT	.	94	40	122	0	.	0	0	0	0	0	3
CDCA7	83879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	174228042	174228042	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDCA7-91	NM_031942	exon4	c.G473A	p.R158Q	CAGCGCGGAGTAC	.	214	29	337	0	.	0	0	0	0	0	5
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	215820071	215820071	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCA12-99	NM_173076	exon43	c.C6248T	p.S2083F	ATCCAGGAAAATG	.	201	161	219	0	.	0	0	0	0	0	5
LRRFIP1	9208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	238617211	238617211	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRFIP1-153	NM_001137550	exon2	c.C121T	p.R41W	GCAAAACGGGCGG	.	304	238	246	1	.	3	1	2	0	0	4
C20orf194	25943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3275220	3275220	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C20orf194-68	NM_001009984	exon24	c.C2074T	p.R692W	AACTCCGTTTCTC	.	68	24	75	0	.	1	1	0	0	0	5
GFRA4	64096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3640605	3640605	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GFRA4-90	NM_145762	exon5	c.G851A	p.R284H	AGGGAGCGTCTCT	.	61	25	60	0	.	0	0	0	0	0	5
BPIFB4	149954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	31671498	31671498	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_182519	exon3	c.G495A	p.A165A	TGGGGCGGTGGGC	.	253	115	153	0	.	0	0	0	0	0	5
DLGAP4	22839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35060497	35060497	+	Missense_Mutation	SNP	G	G	A	rs202172659	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DLGAP4-94	NM_014902	exon2	c.G377A	p.R126H	TTCCCCGTGGCGA	.	134	62	98	0	G|0.999;A|0.001	0	0	0	0	0	5
PPP1R16B	26051	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	37546897	37546897	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPP1R16B-228	NM_015568	exon11	c.C1292T	p.P431L	GGGCTCCGGTCAG	.	219	18	171	0	.	2	2	0	0	0	3
PLCG1	5335	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	39795024	39795024	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLCG1-911	NM_182811	exon17	c.G1990A	p.E664K	GCCCACGAGAGCA	.	202	95	186	1	.	2	0	2	0	0	3
JPH2	57158	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	42815069	42815069	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	JPH2-91	NM_175913	exon1	c.C277T	p.R93C	CGTAGCGTCCCTT	.	150	8	138	0	.	1	1	0	0	0	3
TTPAL	79183	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	43118014	43118014	+	Silent	SNP	C	C	T	rs180792442	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTPAL-153	NM_001039199	exon5	c.C861T	p.N287N	CTGGAACGCGGTA	.	206	11	214	0	C|0.999;T|0.000	5	5	0	0	0	3
PABPC1L	80336	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43559220	43559220	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PABPC1L-47	NM_001124756	exon8	c.C1092T	p.Y364Y	ACTCTACGTGGCA	.	202	87	148	1	.	16	12	4	0	0	4
ELMO2	63916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45023110	45023110	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ELMO2-91	NM_182764	exon2	c.G12A	p.P4P	GTCTGACGGTGGT	.	379	156	250	0	.	0	0	0	0	0	5
SULF2	55959	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	46293982	46293982	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SULF2-293	NM_001161841	exon14	c.A1958C	p.K653T	TTTTTCTTCAGGT	.	171	79	94	1	.	148	66	82	0	0	4
BMP7	655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	55777574	55777574	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BMP7-187	NM_001719	exon3	c.G717A	p.P239P	GTGCCGCGGATTG	.	107	46	84	0	.	2	0	2	0	0	5
RAE1	8480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	55931510	55931510	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAE1-226	NM_003610	exon4	c.C204T	p.C68C	TCGCTGCTGGGAA	.	141	61	93	0	.	0	0	0	0	0	5
CDH4	1002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60499460	60499460	+	Missense_Mutation	SNP	C	C	T	rs1051676	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH4-282	NM_001794	exon11	c.C1697T	p.A566V	CCACGGCGGCAGT	.	241	96	208	0	C|1.000;T|0.000	4	1	3	0	0	5
CDH4	1002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60509119	60509119	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH4-282	NM_001794	exon15	c.C2385T	p.Y795Y	GGACTACGACCTC	.	181	84	78	0	.	0	0	0	0	0	5
SRMS	6725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62172334	62172334	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SRMS-521	NM_080823	exon8	c.C1304T	p.T435M	TGCAGCGTCTCGT	.	75	35	19	0	.	0	0	0	0	0	5
PWP2	5822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45548439	45548439	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PWP2-91	NM_005049	exon20	c.G2517A	p.G839G	AGCCGGGACGCTG	.	109	98	154	0	.	2	0	2	0	0	5
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46931077	46931077	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL18A1-90	NM_030582	exon41	c.C4277T	p.P1426L	AGGGTCCGCTGAA	.	66	17	110	0	.	236	165	71	0	0	5
SLC25A18	83733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18070754	18070754	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC25A18-90	NM_031481	exon9	c.C639T	p.N213N	GTTCAACGAGCTC	.	173	142	301	0	.	0	0	0	0	0	5
SLC5A4	6527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32614516	32614516	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC5A4-90	NM_014227	exon15	c.C1965T	p.H655H	GTAGCCGTGAATA	.	75	66	119	0	.	0	0	0	0	0	5
TOM1	10043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	35734781	35734781	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TOM1-91	NM_001135732	exon12	c.G1224A	p.A408A	TGGCGCGGTAAGC	.	37	5	33	0	.	1	1	0	0	0	4
FOXRED2	80020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	36900582	36900582	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FOXRED2-92	NM_001102371	exon3	c.C759A	p.T253T	GTAGTGGGTGGCC	.	87	75	135	1	.	3	0	3	0	0	4
EIF3L	51386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38273801	38273801	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EIF3L-69	NM_016091	exon11	c.C1198T	p.R400C	ATGTTGCGCATGC	.	169	140	279	1	.	285	18	267	0	0	4
SGSM3	27352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40803553	40803553	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SGSM3-494	NM_015705	exon13	c.G1505A	p.R502H	GCTTCCGCAAGAA	.	35	34	13	0	.	30	0	30	0	0	5
EP300	2033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	41572252	41572254	+	In_Frame_Del	DEL	TCT	TCT	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TCT	TCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EP300-2011	NM_001429	exon30	c.4781_4783del	p.1594_1595del	TTCAGGTCTTCTT	.	59	41	98	0	.	0	0	0	0	0	3
TOB2	10766	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	41832698	41832698	+	Missense_Mutation	SNP	G	G	A	rs139245662	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TOB2-227	NM_016272	exon2	c.C652T	p.R218C	CCATGCGAGGCTG	.	103	82	93	1	G|1.000;A|0.000	6	0	6	0	0	3
PKDREJ	10343	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46653903	46653903	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKDREJ-156	NM_006071	exon1	c.C5317T	p.H1773Y	CATTGTGTAACAA	.	97	20	136	2	.	2	2	0	0	0	3
SBF1	6305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50899065	50899065	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SBF1-90	NM_002972	exon24	c.G3044A	p.R1015Q	GGGTACCGCAGCT	.	87	67	167	1	.	12	0	12	0	0	4
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	447311	447311	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHL1-583	NM_006614	exon28	c.A3592G	p.I1198V	TCATTTATTGGTG	.	75	62	118	0	.	4	0	4	0	0	5
IRAK2	3656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	10219666	10219666	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IRAK2-574	NM_001570	exon2	c.G239A	p.R80H	TGTGCCGCCTGGA	.	96	9	92	0	.	0	0	0	0	0	4
TMEM40	55287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	12778317	12778317	+	Missense_Mutation	SNP	C	C	T	rs201284335	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM40-90	NM_018306	exon9	c.G490A	p.V164I	GGAGGACGAAATG	.	460	54	398	0	C|0.999;T|0.001	1	1	0	0	0	4
CNOT10	25904	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	32774948	32774948	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNOT10-91	NM_001256742	exon11	c.1429delA	p.K477fs	CCCAGCAAAAAAG	.	169	48	144	0	.	0	0	0	0	0	3
LRRFIP2	9209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	37107722	37107722	+	Missense_Mutation	SNP	G	G	A	rs148787856	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRFIP2-91	NM_006309	exon23	c.C1559T	p.T520M	TCTCCCGTCTTCA	.	146	15	79	0	G|1.000;A|0.000	3	3	0	0	0	4
ITGA9	3680	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	37514857	37514857	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITGA9-715	NM_002207	exon3	c.G326A	p.G109D	ATCGGGGCACGTC	.	274	117	184	2	.	1	1	0	0	0	3
SCN5A	6331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38618243	38618243	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCN5A-98	NM_198056	exon19	c.C3420T	p.S1140S	TGCTGTGCTGCCC	.	154	60	128	0	.	0	0	0	0	0	5
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266104	41266104	+	Missense_Mutation	SNP	G	G	A	rs28931589	bycluster	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTNNB1-24361	NM_001098209	exon3	c.G101A	p.G34E	ACTCTGGAATCCA	.	110	97	210	0	G|1.000;T|0.000	63	3	60	0	0	5
ZNF445	353274	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	44488379	44488379	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF445-91	NM_181489	exon8	c.G2784A	p.P928P	TGCAGGCGGGCTA	.	101	84	113	1	.	1	0	1	0	0	4
ALS2CL	259173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46718502	46718502	+	Missense_Mutation	SNP	C	C	T	rs200208936	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALS2CL-155	NM_001190707	exon17	c.G1768A	p.V590M	CACCCACGCCCAG	.	46	35	91	0	C|0.999;T|0.000	1	0	1	0	0	5
NME6	10201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	48336637	48336637	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NME6-115	NM_005793	exon5	c.C346T	p.R116C	CATGGCGTGCTCG	.	158	12	236	0	.	9	8	1	0	0	3
GMPPB	29925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49760038	49760038	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GMPPB-90	NM_021971	exon5	c.G552T	p.Q184H	GATGCGCTGCAGC	.	150	42	225	0	.	0	0	0	0	0	5
STAB1	23166	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52550142	52550142	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STAB1-139	NM_015136	exon38	c.G4032A	p.G1344G	CCATGGGCAGTGC	.	122	13	106	1	.	2	2	0	0	0	3
STAB1	23166	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52554026	52554026	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STAB1-139	NM_015136	exon51	c.G5302C	p.D1768H	CCCACAGACGCCG	.	250	109	237	2	.	5	4	1	0	0	3
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52584594	52584594	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PBRM1-575	NM_018313	exon29	c.A4419T	p.P1473P	TCCAGCTGGATGT	.	71	39	51	0	.	18	10	8	0	0	5
ITIH1	3697	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52821065	52821065	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITIH1-93	NM_002215	exon14	c.G1838T	p.G613V	TCAGGGGCATGGC	.	297	45	276	1	.	0	0	0	0	0	4
ITIH4	3700	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52847474	52847474	+	Missense_Mutation	SNP	G	G	A	rs140372968	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITIH4-46	NM_002218	exon24	c.C2756T	p.P919L	ACTCCCGGGGGCC	.	197	92	179	1	G|1.000;A|0.000	12	5	7	0	0	3
FEZF2	55079	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	62355881	62355881	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FEZF2-278	NM_018008	exon5	c.C1257T	p.C419C	AGTGGCGCACGTG	.	407	21	367	0	.	0	0	0	0	0	3
FOXP1	27086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	71027087	71027087	+	Nonsense_Mutation	DEL	G	G	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FOXP1-415	NM_001244815	exon10	c.1246delC	p.L416X	GAGTCAGGGGGGC	.	135	18	72	0	.	0	0	0	0	0	3
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	77623681	77623681	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ROBO2-328	NM_002942	exon14	c.A2003G	p.Y668C	AAGGCTACCGAGT	.	244	14	152	0	.	0	0	0	0	0	3
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	108219012	108219012	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYH15-73	NM_014981	exon5	c.509delC	p.P170fs	ATGTGAGGGGGAG	.	150	16	91	0	.	0	0	0	0	0	3
PLXNA1	5361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126726724	126726724	+	Missense_Mutation	SNP	G	G	A	rs149327396	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLXNA1-93	NM_032242	exon8	c.G2080A	p.A694T	GACTGCGCCTTCC	.	191	80	192	0	G|1.000;A|0.000	4	2	2	0	0	5
PLXNA1	5361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126752807	126752807	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLXNA1-93	NM_032242	exon31	c.C5638T	p.R1880W	CGGCAGCGGCTGC	.	467	98	266	0	.	58	49	9	0	0	5
MRPL3	11222	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	131219274	131219274	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MRPL3-90	NM_007208	exon3	c.G369A	p.Q123Q	TCTTACCTGAAGT	.	115	48	91	0	.	1	0	1	0	0	4
EPHB1	2047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	134911554	134911554	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPHB1-1492	NM_004441	exon11	c.C2019T	p.G673G	CATGGGCCAGTTC	.	404	171	337	1	.	0	0	0	0	0	5
TRIM42	287015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	140407267	140407267	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRIM42-227	NM_152616	exon3	c.C1743T	p.S581S	AGACAGCCAGTCT	.	215	76	140	0	.	0	0	0	0	0	5
ANKUB1	389161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	149485286	149485286	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001144960	exon5	c.A1163C	p.K388T	ACAGGTTTGCTGC	.	190	14	131	0	.	0	0	0	0	0	3
GPR87	53836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151011993	151011993	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR87-153	NM_023915	exon3	c.G1041A	p.S347S	AACTTCCGATCTT	.	381	182	276	1	.	0	0	0	0	0	5
ARHGEF26	26084	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	153970947	153970947	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGEF26-47	NM_001251962	exon13	c.C2343T	p.S781S	CAGCAGCGGGAAG	.	481	62	349	1	.	0	0	0	0	0	4
LRRC34	151827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	169511575	169511575	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC34-90	NM_001172779	exon11	c.G1243A	p.V415M	GCTCCACATCTGT	.	195	21	108	0	.	1	1	0	0	0	4
PRKCI	5584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	169985778	169985778	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRKCI-1378	NM_002740	exon5	c.G440A	p.R147H	CCAAGCGTTTCAA	.	93	33	56	0	.	0	0	0	0	0	5
FNDC3B	64778	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	172070715	172070715	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FNDC3B-155	NM_001135095	exon22	c.T2637C	p.P879P	CTACCCTGATTCA	.	177	69	133	2	.	12	6	6	0	0	3
ABCC5	10057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183732094	183732094	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCC5-137	NM_005688	exon2	c.G87A	p.T29T	TCTGTGCGTCCCA	.	130	14	93	0	.	16	14	2	0	0	4
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	184042024	184042025	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EIF4G1-344	NM_001194946	exon18	c.2529_2530del	p.843_844del	AGTGACTGTGAAC	.	376	92	298	0	.	0	0	0	0	0	3
EPHB3	2049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184297350	184297350	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPHB3-1455	NM_004443	exon10	c.C1887T	p.D629D	GATCGACGTGTCC	.	441	47	390	0	.	10	9	1	0	0	5
LRRC15	131578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	194080702	194080702	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC15-71	NM_001135057	exon3	c.C1089T	p.D363D	GTTCCCGTCCAGG	.	227	108	231	0	.	0	0	0	0	0	5
APOD	347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195306326	195306326	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	APOD-516	NM_001647	exon2	c.A7C	p.M3L	GCAGCATCACCAT	.	71	27	56	0	.	11	11	0	0	0	5
MUC20	200958	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195453329	195453329	+	Nonsense_Mutation	SNP	C	C	T	rs73203946	byfrequency;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_152673	exon3	c.C1342T	p.R448X	AGCAGCCGAGGGA	.	682	162	575	0	C|0.967;A|0.033	41	32	9	0	0	4
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195516579	195516579	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUC4-90	NM_018406	exon2	c.A1872G	p.T624T	GGTGCTTGTGGAA	.	282	117	246	0	.	0	0	0	0	0	5
LRCH3	84859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	197598289	197598289	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRCH3-91	NM_032773	exon19	c.C2086T	p.R696X	CATGTGCGACCTC	.	334	161	249	1	.	9	7	2	0	0	5
LMLN	89782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	197702954	197702954	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LMLN-91	NM_001136049	exon4	c.C403T	p.R135X	GTCCGTCGACCTG	.	153	69	119	0	.	1	1	0	0	0	5
HGFAC	3083	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3444827	3444827	+	Missense_Mutation	SNP	C	C	T	rs140691145	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HGFAC-514	NM_001528	exon3	c.C349T	p.R117C	GGGGGCCGCATGC	.	38	31	26	0	C|1.000;T|0.000	0	0	0	0	0	4
PSAPL1	768239	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	7436430	7436430	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PSAPL1-68	NM_001085382	exon1	c.G177A	p.A59A	AGACTTCGCGGTG	.	179	47	314	1	.	4	3	1	0	0	4
FAM184B	27146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	17711136	17711136	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM184B-23	NM_015688	exon2	c.C273T	p.C91C	CTCTGCGCAGCCC	.	66	50	91	0	.	0	0	0	0	0	5
ARAP2	116984	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	36069850	36069851	+	Frame_Shift_Del	DEL	TT	TT	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARAP2-93	NM_015230	exon33	c.4793_4794del	p.1598_1598del	GGACTCTTTATCA	.	38	34	56	0	.	0	0	0	0	0	3
TMEM165	55858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	56283354	56283354	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM165-514	NM_018475	exon3	c.T549C	p.P183P	GAGCCCTGATGAG	.	52	43	100	0	.	35	2	33	0	0	5
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	78987147	78987147	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FRAS1-68	NM_001166133	exon2	c.G85A	p.V29I	GCTTGTGTCTATC	.	53	41	95	0	.	0	0	0	0	0	5
BMP3	651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	81967503	81967503	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BMP3-518	NM_001201	exon2	c.928delA	p.K310fs	CAGTATAAAAAGG	.	79	69	108	0	.	0	0	0	0	0	3
BMP3	651	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	4	81967507	81967507	+	Missense_Mutation	SNP	A	A	T	rs138325448	unknown;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BMP3-518	NM_001201	exon2	c.A932T	p.K311M	ATAAAAAGGATGA	.	80	73	103	0	A|1.000;G|0.000	0	0	0	0	0	3
ADH7	131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100349278	100349278	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADH7-227	NM_001166504	exon4	c.C373T	p.R125C	GGTTGCGACAAGC	.	133	106	157	0	.	0	0	0	0	0	5
FBXW7	55294	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	153249473	153249473	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXW7-6296	NM_033632	exon9	c.T1305C	p.I435I	TCCACTAATGATG	.	130	111	170	2	.	3	0	3	0	0	3
FAM198B	51313	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	159092445	159092445	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM198B-90	NM_016613	exon2	c.G83C	p.S28T	CGGCTGCTCCAGA	.	123	105	138	0	.	6	0	6	0	0	4
SNX25	83891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	186272686	186272686	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SNX25-273	NM_031953	exon14	c.G1897A	p.V633M	ATCGACGTGCAGG	.	68	49	98	0	.	4	0	4	0	0	5
DAP	1611	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	10681252	10681252	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DAP-90	NM_004394	exon4	c.G225A	p.A75A	CACCTGCGCAGCC	.	94	35	64	1	.	52	24	28	0	0	4
IL7R	3575	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	35867541	35867541	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IL7R-157	NM_002185	exon3	c.355delA	p.K119fs	ACCTGCAAAAAAA	.	70	20	37	0	.	0	0	0	0	0	3
DDX4	54514	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	55056049	55056049	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DDX4-227	NM_001166533	exon4	c.G149A	p.R50Q	CTTCTCGAAGAGA	.	150	68	97	1	.	0	0	0	0	0	4
DDX4	54514	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	55063742	55063742	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DDX4-227	NM_001142549	exon7	c.G368T	p.R123L	CAACACGGAACAG	.	220	108	173	1	.	0	0	0	0	0	3
ERCC8	1161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	60224762	60224765	+	Frame_Shift_Del	DEL	TTTA	TTTA	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TTTA	TTTA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ERCC8-227	NM_000082	exon2	c.99_102del	p.33_34del	TCTGTCTTTATTT	.	107	44	75	0	.	0	0	0	0	0	3
BDP1	55814	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	70858262	70858262	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BDP1-92	NM_018429	exon38	c.7658delA	p.E2553fs	GCCAGGAAAAAAA	.	111	13	66	0	.	0	0	0	0	0	3
NSA2	10412	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	74066537	74066539	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AAG	AAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NSA2-91	NM_001271665	exon4	c.424_426del	p.142_142del	AAGAGAAAGAAGA	.	608	256	392	0	.	0	0	0	0	0	3
PDE8B	8622	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	76709039	76709039	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDE8B-90	NM_003719	exon17	c.G1816A	p.A606T	ATCGAAGCCAACT	.	232	25	161	1	.	35	35	0	0	0	3
NR2F1	7025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	92929487	92929487	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NR2F1-227	NM_005654	exon3	c.G1211A	p.R404H	TCATCCGCGATAT	.	332	165	332	1	.	1	1	0	0	0	4
KIAA0825	285600	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	93807171	93807171	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA0825-91	NM_001145678	exon9	c.1721delA	p.K574fs	ACTCACTTTTTAG	.	136	70	107	0	.	0	0	0	0	0	3
SEMA6A	57556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	115813772	115813772	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEMA6A-92	NM_020796	exon14	c.G1506A	p.A502A	AGAGAACGCAACA	.	260	29	207	0	.	7	7	0	0	0	4
SEPT8	23176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	132097247	132097247	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEPT8-70	NM_015146	exon7	c.C865T	p.R289C	GCTCGCGGAGGTC	.	156	72	104	0	.	74	41	33	0	0	5
FSTL4	23105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	132569152	132569152	+	Silent	SNP	G	G	A	rs190908572	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FSTL4-91	NM_015082	exon8	c.C972T	p.S324S	GTGGCCGGAAGCA	.	290	133	276	1	G|0.999;A|0.000	19	10	9	0	0	4
PCDHA2	56146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140174695	140174695	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHA2-94	NM_031495	exon1	c.C146T	p.A49V	GCATCGCGCAGGA	.	158	78	46	0	.	3	3	0	0	0	5
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140725147	140725147	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHGA3-68	NM_032011	exon1	c.C1547T	p.A516V	TATACGCGCTGAG	.	527	178	340	0	.	4	2	2	0	0	5
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140725295	140725295	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHGA3-68	NM_032011	exon1	c.C1695T	p.P565P	GTACCCCGCCCTC	.	468	99	190	0	.	6	6	0	0	0	4
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140725299	140725299	+	Missense_Mutation	SNP	C	C	T	rs201819603	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHGA3-68	NM_032011	exon1	c.C1699T	p.L567F	CCCGCCCTCCCCA	.	454	92	183	0	C|0.999;T|0.001	8	8	0	0	0	3
CYFIP2	26999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156746911	156746911	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CYFIP2-22	NM_001037332	exon14	c.C1498T	p.R500W	GCGGTACGGAAGA	.	210	86	197	0	.	10	5	5	0	0	5
LCP2	3937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	169685169	169685169	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LCP2-23	NM_005565	exon16	c.G972A	p.V324V	CTGATGCACTGTG	.	155	18	120	0	.	0	0	0	0	0	4
STC2	8614	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	172744904	172744904	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STC2-93	NM_003714	exon4	c.C855T	p.S285S	GCTTCCGGAAGGT	.	160	10	119	0	.	28	28	0	0	0	3
PROP1	5626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	177420005	177420005	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PROP1-90	NM_006261	exon3	c.G386A	p.R129H	AGTGAGCGCTCTT	.	141	49	101	0	.	0	0	0	0	0	5
ADAMTS2	9509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178567010	178567010	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS2-228	NM_014244	exon11	c.G1656A	p.W552X	TGTCAGCCAGATG	.	281	147	187	0	.	0	0	0	0	0	5
RIOK1	83732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	7393387	7393387	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RIOK1-336	NM_031480	exon2	c.C127T	p.L43F	GAAGACCTTCAAG	.	84	69	130	1	.	6	0	6	0	0	5
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	12162023	12162023	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIVEP1-139	NM_002114	exon8	c.G6839A	p.R2280H	GGCAGCGTGCTGC	.	121	92	183	0	.	18	0	18	0	0	5
ATXN1	6310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	16306908	16306908	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATXN1-93	NM_001128164	exon8	c.C2100T	p.P700P	ATCCACGGGCTGG	.	97	81	144	1	.	0	0	0	0	0	4
PRL	5617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	22294740	22294740	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRL-90	NM_001163558	exon3	c.C102A	p.G34G	AGCCCCGCCGGGA	.	238	72	314	0	.	0	0	0	0	0	5
HFE	3077	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26093089	26093089	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HFE-90	NM_000410	exon4	c.C793A	p.Q265K	ACCTACCAGGGCT	.	286	74	439	2	.	1	1	0	0	0	4
BAG6	7917	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	31615616	31615617	+	Frame_Shift_Del	DEL	GA	GA	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BAG6-154	NM_004639	exon7	c.557_558del	p.186_186del	GTAGGGGAGAGTC	.	17	10	34	0	.	0	0	0	0	0	3
VARS	7407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31747038	31747038	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VARS-93	NM_006295	exon29	c.C3432T	p.G1144G	CAGGGCGCCCGTG	.	65	59	36	0	.	94	8	82	4	0	5
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	32037421	32037421	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNXB-90	NM_019105	exon15	c.G5496A	p.P1832P	CAGGCCCGGCACG	.	85	7	80	0	.	0	0	0	0	0	3
ZBTB9	221504	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	33423520	33423522	+	In_Frame_Del	DEL	GAG	GAG	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	GAG	GAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZBTB9-90	NM_152735	exon2	c.643_645del	p.215_215del	GAAGAAGAGGAGG	.	61	16	79	0	.	0	0	0	0	0	3
ITPR3	3710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33638975	33638975	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITPR3-1085	NM_002224	exon21	c.G2620A	p.G874S	TACTTCGGCTTCT	.	152	35	181	0	.	1	0	1	0	0	5
BRPF3	27154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	36179103	36179103	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BRPF3-92	NM_015695	exon7	c.G2248T	p.E750X	CTGCTGGAGAAAC	.	51	47	77	0	.	3	0	3	0	0	5
LRFN2	57497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	40400435	40400435	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRFN2-93	NM_020737	exon2	c.G418A	p.A140T	CATCTGCGATGCC	.	68	56	77	0	.	0	0	0	0	0	5
UBR2	23304	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42627467	42627467	+	Missense_Mutation	SNP	G	G	A	rs147922807	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBR2-94	NM_015255	exon30	c.G3316A	p.V1106I	CAATTCGTTACAT	.	110	88	142	0	G|0.999;A|0.001	13	0	13	0	0	4
RRP36	88745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42992729	42992729	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RRP36-90	NM_033112	exon2	c.C137T	p.S46F	GCACATCTAACAT	.	71	26	101	0	.	0	0	0	0	0	5
TTBK1	84630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43230559	43230559	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTBK1-353	NM_032538	exon13	c.G1457A	p.R486H	CCTCGCGCCAGGC	.	112	26	50	0	.	0	0	0	0	0	5
CAPN11	11131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44144037	44144037	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CAPN11-136	NM_007058	exon9	c.C963A	p.P321P	GAATCCCTGGGGC	.	125	32	147	0	.	0	0	0	0	0	5
TINAG	27283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	54185431	54185431	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TINAG-93	NM_014464	exon2	c.G410T	p.C137F	AAAACTGCAACTC	.	27	17	47	0	.	0	0	0	0	0	5
PHF3	23469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	64395054	64395054	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHF3-229	NM_015153	exon3	c.C1431T	p.S477S	AAGTAGCGTTTCT	.	136	112	187	1	.	6	0	6	0	0	4
COL19A1	1310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	70873275	70873275	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL19A1-156	NM_001858	exon36	c.C2387T	p.A796V	CAGGAGCAAAAGG	.	82	61	108	0	.	0	0	0	0	0	5
ARMC2	84071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	109249377	109249377	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARMC2-68	NM_032131	exon11	c.G1437A	p.T479T	CTGCACGGCAATG	.	117	59	211	0	.	1	1	0	0	0	5
SESN1	27244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	109308793	109308793	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SESN1-227	NM_014454	exon10	c.C1610T	p.A537V	AGTTCTGCTTGCA	.	50	32	62	0	.	6	2	4	0	0	5
GPR6	2830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	110300812	110300812	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR6-90	NM_005284	exon1	c.G497A	p.R166H	TGGACCGCTACCT	.	75	60	102	0	.	0	0	0	0	0	5
MED23	9439	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	131944491	131944491	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MED23-24	NM_015979	exon5	c.G396T	p.K132N	ATATACCTTGTAA	.	20	6	30	0	.	0	0	0	0	0	3
PLAGL1	5325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	144269185	144269185	+	Missense_Mutation	SNP	C	C	T	rs201696236	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLAGL1-91	NM_001080953	exon6	c.G89A	p.R30Q	TACGGCCGCTCCC	.	272	232	310	1	.	0	0	0	0	0	4
SNX9	51429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	158349722	158349722	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SNX9-226	NM_016224	exon12	c.C1276T	p.R426C	TGGAAGCGCTGCA	.	55	48	80	0	.	0	0	0	0	0	5
FNDC1	84624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159660704	159660704	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FNDC1-138	NM_032532	exon14	c.C4336T	p.P1446S	ACCCATCCCCCTA	.	51	31	87	0	.	0	0	0	0	0	5
SLC22A3	6581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160864677	160864677	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC22A3-517	NM_021977	exon9	c.G1413A	p.S471S	AGTTTCGCTCTGT	.	42	35	55	0	.	19	0	19	0	0	5
USP42	84132	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	6193968	6193968	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP42-659	NM_032172	exon15	c.C2783T	p.A928V	ACGCCGCGGCGCC	.	116	73	34	0	.	4	1	3	0	0	4
HOXA3	3200	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	27147667	27147667	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HOXA3-153	NM_030661	exon3	c.1199delG	p.G400fs	CCGGCACCCCCAT	.	76	37	23	0	.	0	0	0	0	0	3
PRR15	222171	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	29606205	29606205	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRR15-46	NM_175887	exon2	c.G260A	p.R87H	GCCGCCGCAATTT	.	88	14	57	0	.	14	11	3	0	0	3
MYO1G	64005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45014805	45014805	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO1G-137	NM_033054	exon5	c.G586A	p.V196M	CACCCACGTGCTG	.	179	80	161	0	.	0	0	0	0	0	5
MLXIPL	51085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	73008706	73008709	+	Frame_Shift_Del	DEL	CAAA	CAAA	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CAAA	CAAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLXIPL-91	NM_032951	exon16	c.2335_2338del	p.779_780del	AGGACTCAAACAG	.	61	29	61	0	.	0	0	0	0	0	3
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	88964603	88964603	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF804B-101	NM_181646	exon4	c.A2307G	p.I769M	TGATATAACAAAG	.	273	22	215	0	.	0	0	0	0	0	3
AP4M1	9179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99701292	99701292	+	Missense_Mutation	SNP	G	G	A	rs201065427	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AP4M1-90	NM_004722	exon6	c.G520A	p.V174I	CGCCCCGTCCTGT	.	96	44	90	0	G|0.999;A|0.000	20	6	14	0	0	5
AP1S1	1174	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	100802405	100802405	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AP1S1-226	NM_001283	exon4	c.357delG	p.M119fs	TTTGATGGGGGGG	.	162	76	133	0	.	0	0	0	0	0	3
PLOD3	8985	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100853911	100853911	+	Missense_Mutation	SNP	G	G	A	rs75592752	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLOD3-92	NM_001084	exon13	c.C1402T	p.R468W	CACCCCGGATCAC	.	132	57	114	0	A|0.000;C|0.010;G|0.990	197	82	115	0	0	4
PRKRIP1	79706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	102038071	102038071	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRKRIP1-91	NM_024653	exon2	c.A131G	p.K44R	AGGACAAAGCAGT	.	169	83	138	0	.	2	2	0	0	0	5
PSMC2	5701	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	103006564	103006564	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PSMC2-90	NM_002803	exon9	c.798delA	p.T266fs	CAGAACAAAAAAA	.	78	34	52	0	.	0	0	0	0	0	3
SRPK2	6733	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	104767476	104767479	+	Frame_Shift_Del	DEL	CAAA	CAAA	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CAAA	CAAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SRPK2-805	NM_182692	exon14	c.1783_1786del	p.595_596del	GTGGTTCAAACAA	.	166	62	161	0	.	0	0	0	0	0	3
BCAP29	55973	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	107253834	107253834	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BCAP29-136	NM_018844	exon7	c.C647T	p.S216L	GACTTTCGAAAGA	.	232	101	208	1	.	72	39	33	0	0	3
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107820770	107820770	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NRCAM-156	NM_001037132	exon22	c.G2748A	p.P916P	TAGCCCCGGCAAC	.	187	100	129	0	.	35	24	11	0	0	5
SMO	6608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128843243	128843243	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMO-2451	NM_005631	exon2	c.G350A	p.R117H	CCCCCCGCTGCTG	.	120	55	79	0	.	1	0	1	0	0	5
AKR1D1	6718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	137761290	137761290	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AKR1D1-91	NM_001190907	exon1	c.G26A	p.R9H	GTCACCGCATACC	.	165	87	148	0	.	0	0	0	0	0	5
JHDM1D	80853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139796487	139796487	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	JHDM1D-91	NM_030647	exon17	c.A2242T	p.T748S	AACACGTGGAATA	.	192	75	155	0	.	1	1	0	0	0	5
ZYX	7791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	143087734	143087734	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZYX-90	NM_003461	exon10	c.G1678A	p.V560M	GGTCACGTGCTCT	.	180	17	165	0	.	198	174	24	0	0	4
OR2A14	135941	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143826996	143826996	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2A14-90	NM_001001659	exon1	c.G791A	p.R264H	AGTCCCGCCATCC	.	224	85	187	1	.	0	0	0	0	0	4
NOBOX	135935	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	144096190	144096190	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOBOX-69	NM_001080413	exon8	c.1322delC	p.P441fs	AAGAGTGGGGGGG	.	89	49	69	0	.	0	0	0	0	0	3
ABCF2	10061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150920935	150920935	+	Missense_Mutation	SNP	G	G	A	rs138611892	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCF2-90	NM_005692	exon5	c.C551T	p.A184V	CACTCCGCTGTGG	.	95	40	67	0	G|1.000;A|0.000	0	0	0	0	0	5
RNF32	140545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	156469120	156469120	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RNF32-226	NM_001184996	exon9	c.G860A	p.R287H	CTCTGCGCCGGGA	.	176	94	57	0	.	9	3	6	0	0	5
ANGPT2	285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	6371316	6371316	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANGPT2-91	NM_001147	exon7	c.C1082T	p.S361L	AGTTGCGAAACAA	.	56	45	86	0	.	7	7	0	0	0	5
PDLIM2	64236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	22447189	22447189	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDLIM2-90	NM_021630	exon8	c.G1448A	p.R483Q	AGGGACGGGCGGC	.	183	152	295	2	.	30	1	29	0	0	4
UNC5D	137970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	35608159	35608159	+	Silent	SNP	G	G	A	rs145027081	unknown;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UNC5D-96	NM_080872	exon13	c.G1995A	p.A665A	CTTTGCGTGTCAT	.	186	145	248	0	G|1.000;C|0.000	0	0	0	0	0	5
BAG4	9530	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	38067995	38067995	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BAG4-228	NM_004874	exon5	c.1358delA	p.E453fs	AATTAGAAAAAAA	.	54	29	74	0	.	0	0	0	0	0	3
WHSC1L1	54904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	38162210	38162210	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WHSC1L1-658	NM_023034	exon14	c.G2506A	p.G836R	TGCTTCCGGCCGC	.	57	45	76	0	.	1	0	1	0	0	5
HOOK3	84376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	42823193	42823193	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HOOK3-154	NM_032410	exon11	c.G958C	p.V320L	GGTCAAGTAGAAT	.	153	27	258	0	.	4	4	0	0	0	5
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	61743055	61743055	+	Missense_Mutation	SNP	G	G	A	rs190548814	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHD7-141	NM_017780	exon15	c.G3697A	p.G1233S	AAAGGCGGTGGTC	.	115	33	186	0	G|0.999;A|0.001	0	0	0	0	0	4
TRIM55	84675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	67049359	67049359	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRIM55-230	NM_184086	exon4	c.C537T	p.L179L	CATCCTCGTGGGC	.	92	19	127	0	.	0	0	0	0	0	5
CA3	761	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	86354416	86354416	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CA3-514	NM_005181	exon3	c.C347T	p.A116V	ATGCAGCGGAGGT	.	114	15	91	0	.	0	0	0	0	0	3
POP1	10940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	99146235	99146235	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POP1-154	NM_001145860	exon6	c.C794T	p.A265V	TAAAGGCGCTTTC	.	140	66	124	0	.	1	0	1	0	0	5
UBR5	51366	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	103289349	103289349	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBR5-761	NM_015902	exon45	c.6360delA	p.K2120fs	CCCTTCTTTTTTT	.	55	25	45	0	.	0	0	0	0	0	3
UBR5	51366	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	103297999	103297999	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBR5-761	NM_015902	exon39	c.G5226A	p.A1742A	CAAACCCGCTGAA	.	75	33	63	0	.	2	0	2	0	0	4
ZFPM2	23414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	106813889	106813889	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFPM2-139	NM_012082	exon8	c.C1579T	p.R527X	CATCGGCGACTGA	.	54	27	35	0	.	0	0	0	0	0	5
TRPS1	7227	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	116616259	116616259	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPS1-229	NM_014112	exon4	c.A1937G	p.Y646C	CTTTCATAGTGAA	.	268	15	168	0	.	2	2	0	0	0	3
COLEC10	10584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	120101975	120101975	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COLEC10-229	NM_006438	exon2	c.C205T	p.R69C	GTGGGACGCATGG	.	270	18	212	0	.	0	0	0	0	0	3
MTBP	27085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	121458716	121458716	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MTBP-228	NM_022045	exon2	c.T162C	p.I54I	AAGCATTAGTGCT	.	74	10	55	0	.	2	2	0	0	0	4
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133913766	133913766	+	Missense_Mutation	SNP	C	C	T	rs201453011	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TG-145	NM_003235	exon16	c.C3602T	p.T1201M	CTGGGACGCGCGT	.	210	106	196	0	C|0.999;T|0.001	0	0	0	0	0	5
FAM135B	51059	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	139164439	139164439	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM135B-31	NM_015912	exon13	c.G2279A	p.R760Q	ACCTCCCGCTCAT	.	62	15	72	1	.	0	0	0	0	0	4
GRINA	2907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145066998	145066998	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRINA-90	NM_001009184	exon7	c.G1105A	p.A369T	GGCCGCGCCAAGG	.	115	89	144	1	.	407	3	403	1	0	5
ZNF251	90987	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145947714	145947714	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF251-68	NM_138367	exon5	c.G1331A	p.R444Q	GAACTCCGACGAA	.	70	63	97	1	.	9	1	8	0	0	4
MPDZ	8777	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	13119542	13119542	+	Missense_Mutation	SNP	C	C	T	rs202112833	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MPDZ-231	NM_003829	exon39	c.G5338A	p.V1780I	TACGAACGTCTTC	.	132	61	117	1	.	10	5	5	0	0	3
FOCAD	54914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	20881923	20881923	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_017794	exon22	c.C2371T	p.R791C	ATGCCTCGTGGGA	.	80	42	58	0	.	13	4	9	0	0	5
CAAP1	79886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	26842344	26842344	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_024828	exon6	c.G1041A	p.A347A	TTTAATCGCTCTT	.	103	48	93	0	.	13	7	6	0	0	5
SMU1	55234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33056173	33056173	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMU1-91	NM_018225	exon9	c.G1060A	p.E354K	TTGCTTCGTTAAC	.	85	41	71	0	.	68	39	29	0	0	5
KIF24	347240	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	34306345	34306345	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF24-22	NM_194313	exon3	c.C718T	p.R240C	CTCCACGACGTAC	.	123	8	86	0	.	0	0	0	0	0	3
CEP78	84131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	80854984	80854984	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CEP78-69	NM_001098802	exon2	c.G299A	p.R100K	CGATAAGATACAA	.	105	9	91	0	.	3	3	0	0	0	3
SPTLC1	10558	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	94794822	94794822	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPTLC1-154	NM_006415	exon15	c.G1347A	p.T449T	TTCCACCGTGACC	.	193	81	193	1	.	106	49	57	0	0	3
PTCH1	5727	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	98231105	98231105	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTCH1-3532	NM_000264	exon14	c.2178delC	p.P726fs	CGTACAGGGGGGC	.	184	76	176	0	.	0	0	0	0	0	3
MUSK	4593	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	113562990	113562990	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUSK-1379	NM_005592	exon14	c.C2332T	p.R778C	TATAACCGCTACA	.	209	90	169	1	.	0	0	0	0	0	3
PSMD5	5711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	123586958	123586958	+	Missense_Mutation	SNP	C	C	T	rs149552567	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PSMD5-90	NM_005047	exon7	c.G820A	p.V274M	ACTTCACGAATCC	.	64	33	63	0	C|1.000;T|0.000	0	0	0	0	0	5
DAB2IP	153090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	124519406	124519406	+	Silent	SNP	C	C	T	rs35510547	byfrequency;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DAB2IP-91	NM_032552	exon4	c.C393T	p.P131P	CAAGCCCGTGCAC	.	376	165	330	1	C|0.994;G|0.006	0	0	0	0	0	4
HSPA5	3309	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	127998973	127998973	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HSPA5-230	NM_005347	exon8	c.G1863T	p.K621N	CAGTTCCTTCTTC	.	140	8	122	0	.	593	570	22	0	1	3
TTC16	158248	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	130479967	130479967	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTC16-90	NM_144965	exon4	c.C342T	p.A114A	CTCGGCCGCCCAG	.	197	90	190	1	.	0	0	0	0	0	3
PRRC2B	84726	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	134340407	134340407	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRRC2B-24	NM_013318	exon11	c.C1662A	p.P554P	AGTGCCCTGGTCT	.	293	18	265	0	.	9	9	0	0	0	3
COL5A1	1289	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137623934	137623934	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL5A1-524	NM_000093	exon9	c.C1350T	p.G450G	TCGGGGCGAGAAA	.	177	68	160	1	.	5	3	2	0	0	4
COL5A1	1289	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	137716657	137716657	+	Missense_Mutation	SNP	G	G	A	rs199998065	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL5A1-524	NM_000093	exon62	c.G4910A	p.R1637H	CCGCCCGCACCTG	.	173	85	114	1	G|0.999;A|0.001	12	7	5	0	0	3
RNF208	727800	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	140115250	140115250	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_031297	exon1	c.G415A	p.E139K	GGGGCTCGCCTGC	.	104	18	21	0	.	15	12	3	0	0	3
EXD3	54932	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	140243597	140243597	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EXD3-90	NM_017820	exon16	c.C1795A	p.L599M	TCTGCAGGCCGGG	.	91	44	56	1	.	0	0	0	0	0	3
ARRDC1	92714	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	140508572	140508572	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARRDC1-90	NM_152285	exon5	c.G524A	p.R175H	ATCTCCGCGGCTA	.	192	15	156	0	.	99	92	7	0	0	3
EHMT1	79813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140676778	140676778	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EHMT1-154	NM_001145527	exon15	c.C2311T	p.Q771X	GAGCACCAGAATA	.	95	43	87	0	.	24	18	6	0	0	5
ASMTL	8623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	1546767	1546767	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASMTL-62	NM_004192	exon7	c.G757A	p.A253T	TGCCCGCGTCCCT	.	98	82	25	0	.	55	3	52	0	0	5
PNPLA4	8228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	7890071	7890071	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PNPLA4-130	NM_004650	exon3	c.C249T	p.P83P	ATAACCGGGCGTT	.	242	202	263	1	.	37	1	36	0	0	4
KAL1	3730	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	8553424	8553424	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KAL1-134	NM_000216	exon6	c.G740A	p.R247Q	TGAACTCGCTCGT	.	144	112	164	2	.	0	0	0	0	0	4
USP9X	8239	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	41075161	41075161	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP9X-563	NM_001039591	exon35	c.G5341A	p.V1781I	GATACCGTAAAGC	.	119	9	143	0	.	1	1	0	0	0	3
KCND1	3750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48826543	48826543	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCND1-133	NM_004979	exon1	c.G136A	p.V46M	CGCTCACGTTCAC	.	126	109	225	1	.	2	0	2	0	0	5
SHROOM4	57477	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	50350688	50350690	+	In_Frame_Del	DEL	CCT	CCT	-	rs143151534	unknown;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CCT	CCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SHROOM4-131	NM_020717	exon6	c.3452_3454del	p.1151_1152del	CCTCTGCCTCCTC	.	92	65	106	0	-|0.701;TCC|0.299	0	0	0	0	0	3
TEX11	56159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	69774510	69774510	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TEX11-178	NM_001003811	exon27	c.A2326G	p.T776A	CAATTGTTTCAAA	.	161	32	246	0	.	0	0	0	0	0	5
CXCR3	2833	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	70836820	70836820	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CXCR3-660	NM_001142797	exon2	c.G643A	p.V215M	GGGTCACGCGGGC	.	171	15	198	0	.	6	6	0	0	0	3
ZDHHC15	158866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	74636938	74636938	+	Silent	SNP	G	G	A	rs192529997	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZDHHC15-132	NM_144969	exon10	c.C951T	p.N317N	ATCCTCGTTGTCT	.	100	76	200	0	G|0.998;A|0.002	1	0	1	0	0	5
ZNF711	7552	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	84510411	84510413	+	In_Frame_Del	DEL	ATC	ATC	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	ATC	ATC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF711-134	NM_021998	exon4	c.226_228del	p.76_76del	CCTGATATCATCA	.	285	47	396	0	.	0	0	0	0	0	3
SRPX2	27286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	99905848	99905848	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SRPX2-132	NM_014467	exon3	c.C149T	p.A50V	CTCCTGCCCTGGA	.	89	79	118	0	.	0	0	0	0	0	5
RGAG1	57529	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	109695052	109695052	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RGAG1-132	NM_020769	exon3	c.G1207C	p.V403L	CCACCAGTAAGAG	.	98	6	177	0	.	0	0	0	0	0	3
SLITRK4	139065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	142717897	142717897	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLITRK4-193	NM_001184750	exon2	c.C1028T	p.P343L	GGTGCCGGGCAAG	.	212	177	272	1	.	0	0	0	0	0	4
FMR1NB	158521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	147090160	147090160	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FMR1NB-131	NM_152578	exon4	c.G561T	p.M187I	GCAAATGTTTGGG	.	90	75	129	0	.	0	0	0	0	0	5
AFF2	2334	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	147733548	147733548	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AFF2-135	NM_002025	exon2	c.76delA	p.K26fs	GCACTTAAAAAAA	.	277	157	315	0	.	0	0	0	0	0	3
MAGEA11	4110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	148797592	148797592	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAGEA11-132	NM_005366	exon5	c.C446T	p.A149V	AGGCTGCCTTCTT	.	198	163	301	0	.	0	0	0	0	0	5
ATP2B3	492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152815531	152815531	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP2B3-109	NM_001001344	exon10	c.G1610A	p.R537H	TCCCACGCCAGGT	.	102	86	151	0	.	25	0	24	1	0	5
ZDHHC17	23390	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	77222254	77222255	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_015336	exon10	c.1125_1126insT	p.F375fs	GTGGTTCTTCTGG	.	108	41	114	0	.	0	0	0	0	0	3
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	38609984	38609985	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SIPA1L3-91	NM_015073	exon9	c.2330_2331insC	p.G777fs	CTTTCGGCCCCCC	.	85	35	86	0	.	0	0	0	0	0	3
PRR12	57479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50098807	50098808	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRR12-70	NM_020719	exon4	c.1215_1216insC	p.R405fs	CACCAGGCCCCCC	.	56	18	43	0	.	0	0	0	0	0	3
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	79366741	79366742	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FRAS1-68	NM_025074	exon42	c.5731_5732insA	p.E1911fs	GTCCTGGAAAACT	.	108	13	125	0	.	0	0	0	0	0	3
ADAM28	10863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	24167472	24167473	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAM28-228	NM_021777	exon3	c.216_217insA	p.L72fs	TTATTTGAAAAAA	.	129	92	151	0	.	0	0	0	0	0	3
KCTD21	283219	ucsc.edu;bcgsc.ca	37	11	77885257	77885257	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCTD21-69	NM_001029859	exon2	c.C344A	p.T115K	TTCAGTGTGATGT	.	70	59	141	2	.	4	0	4	0	0	2
CPNE7	27132	broad.mit.edu;bcgsc.ca	37	16	89661966	89661966	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CPNE7-90	NM_014427	exon16	c.G1719A	p.A573A	GCCCGCGCTCCGG	.	174	7	71	0	.	21	18	2	1	0	2
GPC1	2817	broad.mit.edu;bcgsc.ca	37	2	241401648	241401648	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPC1-153	NM_002081	exon3	c.G366A	p.L122L	GACGCTGCAGGCC	.	154	7	177	0	.	85	80	5	0	0	2
OGFR	11054	broad.mit.edu	37	20	61443813	61443813	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OGFR-68	NM_007346	exon7	c.C846T	p.C282C	CCGCTGCAAGTTC	.	130	17	45	1	.	66	57	9	0	0	1
RTN4R	65078	ucsc.edu;bcgsc.ca	37	22	20230060	20230060	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RTN4R-90	NM_023004	exon2	c.G596A	p.R199H	AGCCCACGGAAGG	.	184	151	153	2	.	82	0	82	0	0	2
RNF44	22838	broad.mit.edu;bcgsc.ca	37	5	175959061	175959061	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RNF44-658	NM_014901	exon3	c.C241T	p.R81X	GCATTCGGGGGCT	.	225	10	107	0	.	34	32	2	0	0	2
CYP2W1	54905	hgsc.bcm.edu	37	7	1027032	1027032	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CYP2W1-90	NM_017781	exon7	c.C1008G	p.P336P	GACTCCCCGGCTG	.	45	20	7	0	.	6	0	6	0	0	1
ALKBH4	54784	bcgsc.ca	37	7	102098305	102098305	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALKBH4-90	NM_017621	exon3	c.C445T	p.R149W	CGGGCCGGAAGCC	.	76	23	38	1	.	14	8	6	0	0	1
RNF208	727800	hgsc.bcm.edu;broad.mit.edu	37	9	140115251	140115251	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_031297	exon1	c.C414T	p.G138G	GGGCTCGCCTGCC	.	100	10	18	0	.	22	13	7	2	0	2
MED14	9282	broad.mit.edu;bcgsc.ca	37	X	40518765	40518765	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MED14-289	NM_004229	exon27	c.C3779T	p.T1260M	TGAAGCGTTTGGT	.	109	5	109	0	.	32	28	4	0	0	2
MED12	9968	ucsc.edu;bcgsc.ca	37	X	70356163	70356163	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MED12-272	NM_005120	exon37	c.G5058A	p.S1686S	GATCTCGCCCTGG	.	175	143	239	2	.	45	0	45	0	0	2
GDI1	2664	broad.mit.edu;bcgsc.ca	37	X	153669455	153669455	+	Silent	SNP	C	C	A	rs201655775	unknown;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GDI1-90	NM_001493	exon7	c.C732A	p.I244I	TGCCATCTATGGG	.	66	9	125	0	.	6	4	2	0	0	2
MUL1	79594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	20828581	20828581	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUL1-90	NM_024544	exon3	c.A310G	p.N104D	TTCGATTCCACAC	.	130	26	168	0	.	2	1	1	0	0	5
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22182300	22182300	+	Missense_Mutation	SNP	G	G	A	rs151035968	unknown;alternate_allele	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HSPG2-141	NM_005529	exon45	c.C5681T	p.T1894M	GTGGGCGTGGGGC	.	61	42	30	0	G|1.000;T|0.000	0	0	0	0	0	5
TNR	7143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	175365862	175365862	+	Missense_Mutation	SNP	G	G	A	rs138654492	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNR-324	NM_003285	exon5	c.C1058T	p.T353M	TATTCCGTCACTG	.	100	13	110	0	G|1.000;A|0.000	0	0	0	0	0	4
RGSL1	353299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182499457	182499457	+	Missense_Mutation	SNP	C	C	T	rs202037903	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RGSL1-226	NM_001137669	exon12	c.C2204T	p.T735M	TGTTAACGCTCCA	.	74	38	118	0	.	0	0	0	0	0	5
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186092228	186092228	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HMCN1-113	NM_031935	exon81	c.G12375C	p.Q4125H	CCGCCAGCGCGTC	.	103	33	153	0	.	0	0	0	0	0	5
ATRNL1	26033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	116853707	116853707	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATRNL1-96	NM_207303	exon1	c.C198A	p.T66T	GAGGACCGGCTCC	.	75	30	30	0	.	0	0	0	0	0	4
SCUBE2	57758	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	9101018	9101018	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCUBE2-92	NM_001170690	exon3	c.G295T	p.V99F	CATGGACACAGCC	.	105	9	158	0	.	1	1	0	0	0	3
CNTN5	53942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	99942451	99942451	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTN5-366	NM_001243270	exon11	c.G1314T	p.M438I	TGAGATGGTTAAT	.	84	12	85	0	.	0	0	0	0	0	4
SORL1	6653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	121490527	121490527	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SORL1-228	NM_003105	exon43	c.C5790G	p.D1930E	CCCGGACAGCAGG	.	147	40	201	0	.	0	0	0	0	0	5
OR10S1	219873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	123848074	123848074	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR10S1-70	NM_001004474	exon1	c.G325C	p.E109Q	AGCCCTCAAAGGA	.	103	12	140	0	.	0	0	0	0	0	4
ABCD2	225	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	40012643	40012643	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCD2-95	NM_005164	exon1	c.C775A	p.L259I	CTGCTAGTAGGGT	.	259	85	192	1	.	0	0	0	0	0	3
FMN1	342184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	33149251	33149251	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FMN1-23	NM_001103184	exon13	c.C3224A	p.P1075H	TTGAAAGGCTGGA	.	79	15	126	0	.	0	0	0	0	0	4
PATL2	197135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	44964347	44964347	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145112	exon7	c.G523T	p.A175S	TCTTGGCTGGGGG	.	51	7	69	0	.	0	0	0	0	0	4
SLC47A2	146802	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	19582079	19582079	+	Missense_Mutation	SNP	G	G	A	rs201004962	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC47A2-90	NM_152908	exon17	c.C1729T	p.R577C	CACGGCGGATGAC	.	132	8	139	0	.	0	0	0	0	0	3
OGFOD3	79701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	80361861	80361861	+	Silent	SNP	C	C	T	rs200973304	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_175902	exon7	c.G651A	p.T217T	CGCTTCCGTGCTG	.	105	8	62	0	C|0.999;T|0.000	42	32	10	0	0	4
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	7013829	7013829	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LAMA1-149	NM_005559	exon23	c.G3348A	p.G1116G	GCAGGCCCCGGTT	.	174	13	214	0	.	0	0	0	0	0	3
XAB2	56949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7689283	7689283	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	XAB2-272	NM_020196	exon7	c.G871A	p.D291N	TGAAGTCCCGCAC	.	141	9	109	0	.	11	9	2	0	0	4
KLF1	10661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	12996235	12996235	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLF1-90	NM_006563	exon2	c.C809T	p.S270L	GCCCACGAACGTC	.	142	21	10	0	.	0	0	0	0	0	3
CKM	1158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	45815122	45815122	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CKM-91	NM_001824	exon5	c.A538G	p.T180A	TCTCCGTCATGCT	.	119	19	94	0	.	0	0	0	0	0	4
ARHGAP35	2909	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	47492807	47492807	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_004491	exon4	c.A3911G	p.N1304S	ACCACAACCTGGA	.	154	21	138	1	.	0	0	0	0	0	3
ZNF761	388561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53959137	53959137	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF761-91	NM_001008401	exon7	c.G1376A	p.R459H	GTAGACGTCATAC	.	131	24	72	0	.	2	2	0	0	0	5
ZNF628	89887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55995158	55995158	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF628-22	NM_033113	exon3	c.G2598A	p.Q866Q	GGTCCAGCTCCAG	.	202	68	114	0	.	8	3	5	0	0	5
SLC4A10	57282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	162820668	162820668	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC4A10-229	NM_001178015	exon22	c.C2886T	p.F962F	GCTCTTCTGGATG	.	33	7	42	0	.	0	0	0	0	0	4
LIMK2	3985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	31667154	31667154	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LIMK2-548	NM_005569	exon12	c.G1350A	p.R450R	CCACCGGGATCTG	.	131	10	152	0	.	1	1	0	0	0	3
TOPAZ1	375337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	44285176	44285176	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145030	exon2	c.A1178C	p.D393A	TGATGGATCATTT	.	26	8	15	0	.	0	0	0	0	0	4
OR5H14	403273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	97869140	97869140	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR5H14-91	NM_001005514	exon1	c.T911C	p.M304T	CAAAAATGTTCAA	.	214	19	154	0	.	0	0	0	0	0	4
TRIM42	287015	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	140401765	140401765	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRIM42-227	NM_152616	exon2	c.C803T	p.S268L	TCCACTCGGATGT	.	244	16	157	0	.	0	0	0	0	0	3
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	bycluster	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIK3CA-27752	NM_006218	exon21	c.A3140G	p.H1047R	ATGCACATCATGG	.	179	38	156	0	.	6	6	0	0	0	4
NPFFR2	10886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	73012700	73012700	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NPFFR2-92	NM_004885	exon4	c.A740G	p.Q247R	GGTTCCAGTGTGT	.	79	14	68	0	.	0	0	0	0	0	4
GRID2	2895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	94376818	94376818	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRID2-159	NM_001510	exon11	c.C1551T	p.A517A	GAGAGCCGACATA	.	149	21	123	0	.	0	0	0	0	0	4
RAPGEF2	9693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	160275135	160275135	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAPGEF2-637	NM_014247	exon22	c.A4105G	p.T1369A	GAAGAAACCAAGC	.	131	46	86	0	.	3	1	1	1	0	5
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	127863580	127863580	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBN2-146	NM_001999	exon4	c.A517T	p.T173S	AATAAGTTCCAAT	.	172	20	131	0	.	0	0	0	0	0	4
GDF9	2661	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	132197395	132197395	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GDF9-227	NM_005260	exon2	c.G1251A	p.P417P	ACATGACGGTCTT	.	209	13	133	0	.	0	0	0	0	0	3
ABLIM3	22885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	148624490	148624490	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABLIM3-93	NM_014945	exon16	c.C1398G	p.S466R	CATCAGCCAGACC	.	222	81	178	0	.	5	1	4	0	0	5
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	65622395	65622395	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EYS-660	NM_001142800	exon16	c.C2623T	p.H875Y	TACAATGCTGATT	.	171	19	165	0	.	0	0	0	0	0	4
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152832157	152832157	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SYNE1-607	NM_033071	exon7	c.C412A	p.L138I	AATATAGAATAAT	.	190	23	153	0	.	0	0	0	0	0	4
CHN2	1124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	29519803	29519803	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHN2-229	NM_001039936	exon1	c.G77A	p.R26H	GGAAACGCCAAGA	.	307	52	220	0	.	0	0	0	0	0	5
RBM48	84060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	92164285	92164285	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_032120	exon4	c.1017+1G>T	.	AAAGAGGTAAGGT	.	124	13	107	0	.	1	1	0	0	0	4
TRRAP	8295	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	98581870	98581870	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRRAP-923	NM_001244580	exon60	c.G9189C	p.R3063R	AAGTCGGATTCAT	.	204	16	151	0	.	1	1	0	0	0	3
PTPRN2	5799	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	157333452	157333452	+	Missense_Mutation	SNP	C	C	T	rs138836883	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPRN2-295	NM_002847	exon23	c.G3004A	p.V1002M	CAGCCACGGCTGT	.	267	20	162	0	C|1.000;T|0.000	11	10	1	0	0	3
EBF2	64641	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	25708132	25708132	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EBF2-26	NM_022659	exon15	c.C1674T	p.S558S	ATTGCCGCTGGAG	.	152	18	209	1	.	1	1	0	0	0	3
ADAM2	2515	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	39634610	39634610	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAM2-227	NM_001464	exon11	c.T962A	p.I321N	TAAGTGATCCCCA	.	84	7	80	0	.	1	0	1	0	0	3
CHRNB3	1142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	42586825	42586825	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHRNB3-91	NM_000749	exon5	c.C375A	p.F125L	CCGCTTCGAAGGC	.	106	61	112	0	.	0	0	0	0	0	5
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	52321748	52321748	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PXDNL-70	NM_144651	exon17	c.C2436T	p.H812H	CAAGTCGTGCTCT	.	26	5	17	0	.	0	0	0	0	0	3
PPEF1	5475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	18822065	18822065	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPEF1-226	NM_006240	exon14	c.C1121T	p.T374M	CAAATACGTGCCG	.	46	8	43	0	.	0	0	0	0	0	4
ND5	0	broad.mit.edu	37	MT	13392	13392	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361567	exon1	c.T1056C	p.N352N	TAACAATGAACAA	.	60	7	12	0	.	9491	8226	1257	5	3	1
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34276428	34276428	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSMD2-103	NM_052896	exon10	c.C1242T	p.G414G	GATGATGCCCGAG	.	16	6	46	0	.	0	0	0	0	0	5
OR10J1	26476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159410014	159410014	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR10J1-69	NM_012351	exon1	c.G466T	p.V156F	CAACTTGTCCTGG	.	800	83	239	0	.	0	0	0	0	0	5
FMO1	2326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	171254505	171254505	+	Missense_Mutation	SNP	G	G	A	rs28360433	byfrequency	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FMO1-515	NM_002021	exon9	c.G1421A	p.R474H	AGTTCCGCTTGAC	.	99	14	109	0	G|0.994;A|0.006	0	0	0	0	0	4
PM20D1	148811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	205797785	205797785	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PM20D1-69	NM_152491	exon13	c.C1472G	p.T491R	TGGTCTGTGTCAG	.	54	9	67	0	.	0	0	0	0	0	4
NLRP3	114548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247587746	247587746	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRP3-674	NM_183395	exon3	c.G1001A	p.S334N	TGAGCAGCCTCAT	.	84	28	110	0	.	0	0	0	0	0	5
SLIT1	6585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	98799839	98799839	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLIT1-94	NM_003061	exon21	c.C2203T	p.P735S	CCTGTGGGCACTG	.	203	39	222	0	.	1	1	0	0	0	5
PC	5091	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	66636324	66636324	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PC-228	NM_000920	exon9	c.A1015G	p.I339V	CGGTGATCTCCTC	.	79	7	100	0	.	0	0	0	0	0	3
DNAJC14	85406	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	56215846	56215846	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAJC14-229	NM_032364	exon7	c.C2024T	p.A675V	GAGGCTGCAGCGG	.	66	31	85	0	.	16	8	8	0	0	4
MMP19	4327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56231788	56231788	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MMP19-227	NM_002429	exon7	c.C899T	p.P300L	CCACGGGGCCCTG	.	56	15	87	0	.	0	0	0	0	0	5
MBD6	114785	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	57922471	57922471	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MBD6-516	NM_052897	exon11	c.A2843C	p.K948T	TCAGAAAGTCTCG	.	88	8	116	0	.	31	26	5	0	0	3
WIF1	11197	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	65448919	65448919	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WIF1-1110	NM_007191	exon9	c.C997A	p.H333N	TTCCATGCCAACC	.	68	6	58	0	.	0	0	0	0	0	3
ERCC5	2073	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	103498624	103498624	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ERCC5-689	NM_000123	exon1	c.T8A	p.V3D	TGGGGGTCCAGGG	.	22	14	32	0	.	8	3	5	0	0	4
LRP10	26020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23345363	23345363	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRP10-90	NM_014045	exon5	c.C1206T	p.G402G	GCCTGGCAATTTC	.	71	9	68	0	.	77	68	9	0	0	4
ADAM21	8747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	70926008	70926008	+	Silent	SNP	A	A	C	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAM21-92	NM_003813	exon2	c.A1792C	p.R598R	CATTTAAGGATGA	.	313	146	363	1	.	0	0	0	0	0	4
FAM161B	145483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74411292	74411292	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM161B-91	NM_152445	exon3	c.A860T	p.H287L	TAGACATGTGCAG	.	65	27	79	0	.	3	1	2	0	0	5
PML	5371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	74335395	74335395	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PML-1083	NM_002675	exon8	c.C1776T	p.T592T	CAGCACCCTCAGG	.	75	9	94	0	.	1	0	1	0	0	4
CCNF	899	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2506732	2506732	+	Missense_Mutation	SNP	G	G	A	rs148419125	byfrequency	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCNF-658	NM_001761	exon17	c.G2072A	p.R691Q	CCAGCCGGGAGCC	.	145	31	127	1	G|1.000;A|0.000	2	2	0	0	0	3
NLRP1	22861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	5424256	5424256	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRP1-274	NM_001033053	exon14	c.G3872A	p.G1291D	CGACAGCCCATAT	.	24	21	46	0	.	0	0	0	0	0	5
MFSD6L	162387	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8702218	8702218	+	Missense_Mutation	SNP	C	C	T	rs111726322	byfrequency;alternate_allele	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MFSD6L-90	NM_152599	exon1	c.G221A	p.R74Q	CTTTTCCGGTAGC	.	67	20	83	0	C|0.986;A|0.014	0	0	0	0	0	4
CD300A	11314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72470793	72470793	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CD300A-92	NM_007261	exon3	c.C502A	p.Q168K	AGCATCCAGGAGG	.	135	25	170	0	.	0	0	0	0	0	5
LONP1	9361	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	5707755	5707755	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LONP1-91	NM_004793	exon6	c.T1015C	p.F339L	CCCCGGTGAGCGC	.	158	26	203	1	.	117	85	32	0	0	3
UPF1	5976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18966869	18966869	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UPF1-91	NM_002911	exon12	c.C1680G	p.A560A	TCTGGCCCTGCAC	.	119	24	127	0	.	34	26	8	0	0	5
DCTN1	1639	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	74588719	74588719	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DCTN1-95	NM_004082	exon32	c.G3744A	p.V1248V	GAAGGTCACTTTG	.	34	6	87	0	.	54	24	29	1	0	3
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84924798	84924798	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH6-69	NM_001370	exon47	c.G7624T	p.A2542S	TTAGCGGCCACCA	.	388	44	96	0	.	1	1	0	0	0	5
CLK1	1195	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	201719353	201719353	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLK1-784	NM_001162407	exon11	c.G1332A	p.M444I	CTGTATCATATGT	.	53	6	104	0	.	169	130	39	0	0	3
FAM124B	79843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	225266236	225266236	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM124B-92	NM_024785	exon1	c.C250T	p.R84C	GGACGCGAAATAG	.	93	19	110	0	.	0	0	0	0	0	4
KLHL30	377007	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	239059526	239059526	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLHL30-22	NM_198582	exon8	c.C1557T	p.G519G	GACGGGCGGCCGC	.	155	21	236	1	.	0	0	0	0	0	3
BPIFB4	149954	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	31671359	31671359	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_182519	exon3	c.G356A	p.R119Q	ACCTCCGAAACAG	.	125	8	138	0	.	0	0	0	0	0	3
OLIG2	10215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	34399459	34399459	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OLIG2-629	NM_005806	exon2	c.G289A	p.D97N	AAGAAGGACAAGA	.	132	25	155	0	.	0	0	0	0	0	5
DZIP3	9666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108407467	108407467	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DZIP3-91	NM_014648	exon30	c.A3298G	p.N1100D	AATGTTAATTGTG	.	179	95	260	0	.	9	3	6	0	0	5
CP	1356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	148896230	148896230	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CP-515	NM_000096	exon16	c.G2850C	p.E950D	GAATTCCTCATCA	.	88	15	107	0	.	4	4	0	0	0	4
SLITRK3	22865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	164908554	164908554	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLITRK3-100	NM_014926	exon2	c.C65T	p.T22I	GCAATTGTGCTTA	.	67	15	113	0	.	0	0	0	0	0	5
CHRNA9	55584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	40337918	40337918	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHRNA9-96	NM_017581	exon2	c.C139T	p.R47C	GCTCTTCGTCCAG	.	144	8	133	0	.	0	0	0	0	0	3
FRAS1	80144	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	79328954	79328954	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FRAS1-68	NM_001166133	exon31	c.C4267T	p.H1423Y	TACAGGCACTCAG	.	126	41	172	1	.	0	0	0	0	0	3
LOX	4015	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	121405754	121405754	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LOX-650	NM_002317	exon6	c.T1241G	p.I414S	GGTGAAATTGTGC	.	247	16	117	0	.	0	0	0	0	0	3
PHAX	51808	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	125939673	125939673	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHAX-90	NM_032177	exon2	c.G508C	p.D170H	ACAAAAGATCTAG	.	268	16	96	0	.	51	51	0	0	0	3
CDKN2AIPNL	91368	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	133745680	133745680	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDKN2AIPNL-68	NM_080656	exon2	c.C253G	p.L85V	CTAAAAGGTCTTT	.	103	11	65	0	.	23	23	0	0	0	3
KLHL3	26249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	137056267	137056267	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLHL3-90	NM_017415	exon2	c.G21A	p.K7K	GCTCAGCTTGACA	.	90	13	97	0	.	0	0	0	0	0	4
PCDHGB1	56104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140731780	140731780	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHGB1-33	NM_018922	exon1	c.C1953T	p.S651S	ACTCTCCGCCACC	.	57	12	72	0	.	6	6	0	0	0	4
PCDHGB2	56103	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140741378	140741378	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHGB2-33	NM_018923	exon1	c.C1676T	p.A559V	ACAATGCGCCACG	.	113	17	134	1	.	1	1	0	0	0	3
E2F3	1871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	20488470	20488470	+	Missense_Mutation	SNP	G	G	A	rs147333935	byfrequency	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	E2F3-414	NM_001949	exon6	c.G1126A	p.A376T	AAACCCGCTTCCA	.	78	14	86	0	G|0.999;A|0.001	0	0	0	0	0	4
OR2B6	26212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27925596	27925596	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2B6-69	NM_012367	exon1	c.C578T	p.T193I	AGACAACAGCAAA	.	129	54	177	0	.	0	0	0	0	0	5
GRIK2	2898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	102511871	102511871	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRIK2-157	NM_175768	exon16	c.C2597A	p.P866Q	ACCATCCAGACAC	.	171	42	212	0	.	0	0	0	0	0	5
RGS22	26166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	101016248	101016248	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RGS22-140	NM_015668	exon17	c.C2533T	p.P845S	CTGCAGGAACATT	.	92	17	117	0	.	0	0	0	0	0	5
HHLA1	10086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	133090151	133090151	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145095	exon11	c.C993T	p.S331S	GGGCACGGACGAT	.	99	45	115	0	.	0	0	0	0	0	4
KIAA1432	57589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	5754924	5754924	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1432-90	NM_001135920	exon15	c.A1686G	p.Q562Q	CCGTCAAGAAGAG	.	26	6	17	0	.	0	0	0	0	0	4
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	137710730	137710730	+	Missense_Mutation	SNP	G	G	A	rs183114696	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL5A1-524	NM_000093	exon56	c.G4375A	p.G1459S	CCGGACGGTCCCC	.	70	8	56	0	G|0.999;A|0.000	2	1	1	0	0	3
AKAP4	8852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	49957052	49957052	+	Missense_Mutation	SNP	T	T	C	rs61751432	unknown;alternate_allele	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AKAP4-540	NM_003886	exon5	c.A2312G	p.Q771R	TGCTTCTGCAAGC	.	102	14	100	0	.	0	0	0	0	0	4
SHROOM4	57477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	50377344	50377344	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SHROOM4-131	NM_020717	exon4	c.C1729T	p.R577C	TCGAGCGGCCCCG	.	46	10	43	0	.	0	0	0	0	0	4
COL4A6	1288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107457358	107457358	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL4A6-199	NM_001847	exon6	c.G428T	p.G143V	AGAAGCCCAGGAT	.	64	24	68	0	.	0	0	0	0	0	5
GPR50	9248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	150349287	150349287	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR50-176	NM_004224	exon2	c.C1232G	p.S411C	GCCACTCCAAGGC	.	92	16	92	0	.	0	0	0	0	0	4
QTRT1	81890	hgsc.bcm.edu;broad.mit.edu	37	19	10823651	10823651	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	QTRT1-91	NM_031209	exon9	c.G994A	p.A332T	CTGCACGCACTGC	.	58	4	87	0	.	53	51	2	0	0	2
URI1	8725	broad.mit.edu	37	19	30500035	30500035	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_003796	exon8	c.G810C	p.K270N	TCATAAGGATGTT	.	78	4	119	0	.	46	43	3	0	0	1
GLRX3	10539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	131969900	131969900	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GLRX3-22	NM_006541	exon8	c.G824T	p.G275V	GTACTGGGTATGT	.	43	5	81	0	.	0	0	0	0	0	4
OR52M1	119772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4567166	4567166	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR52M1-68	NM_001004137	exon1	c.G746C	p.C249S	ACCTCTGTGCCAT	.	115	30	153	0	.	0	0	0	0	0	5
ZNF385A	25946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	54778302	54778302	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF385A-23	NM_001130967	exon2	c.G57A	p.P19P	CATGATCGGGGGC	.	46	7	42	0	.	0	0	0	0	0	4
STON2	85439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	81737202	81737202	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STON2-95	NM_001256430	exon7	c.C2425A	p.H809N	AACAGTGTGGGTG	.	52	21	95	0	.	0	0	0	0	0	5
KCNK10	54207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	88652129	88652129	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNK10-95	NM_138318	exon7	c.G1382A	p.R461K	TTTTTCCTCTTGG	.	250	83	338	1	.	0	0	0	0	0	5
VAT1	10493	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	41170156	41170156	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VAT1-90	NM_006373	exon3	c.C663G	p.A221A	GGCCGAGGCCGTT	.	259	14	196	0	.	28	28	0	0	0	3
SNTN	132203	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	63649755	63649755	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SNTN-69	NM_001080537	exon4	c.T428C	p.V143A	GGAATGTAAAAAT	.	130	9	164	0	.	0	0	0	0	0	3
SLCO6A1	133482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	101816044	101816044	+	Silent	SNP	G	G	A	rs143064096	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLCO6A1-96	NM_173488	exon2	c.C453T	p.Y151Y	AATATCGTAACTC	.	141	35	131	0	G|0.998;A|0.002	0	0	0	0	0	4
KCNK9	51305	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	140715144	140715144	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNK9-93	NM_016601	exon1	c.C92G	p.S31W	TGGTCCGACTCGA	.	280	50	143	0	.	0	0	0	0	0	4
SPATA31E1	286234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	90499864	90499864	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_178828	exon4	c.C462A	p.H154Q	CTCCCACCTGCCC	.	90	17	99	0	.	0	0	0	0	0	5
DCAF8L1	139425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	27999220	27999220	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DCAF8L1-112	NM_001017930	exon1	c.G232C	p.D78H	CGACGTCTTCACT	.	275	49	244	0	.	0	0	0	0	0	5
AGAP6	414189	broad.mit.edu	37	10	51748584	51748584	+	Missense_Mutation	SNP	A	A	G	rs75102885	unknown	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AGAP6-1	NM_001077665	exon1	c.A109G	p.R37G	GGAGCTAGGGACA	.	13	2	9	0	G|1.000;|0.000	15	7	8	0	0	1
MN1	4330	hgsc.bcm.edu	37	22	28194933	28194933	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MN1-993	NM_002430	exon1	c.A1599G	p.Q533Q	CTGCTGTTGCTGC	.	58	13	14	0	.	1680	19	1660	0	1	1
MN1	4330	hgsc.bcm.edu	37	22	28194936	28194936	+	Silent	SNP	C	C	T	rs45597040	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MN1-993	NM_002430	exon1	c.G1596A	p.Q532Q	CTGTTGCTGCTGC	.	59	13	15	0	C|0.963;T|0.037	22	17	5	0	0	1
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	154	50	11	0	C|0.960;G|0.040	25	9	16	0	0	1
COX1	5742	broad.mit.edu	37	MT	6849	6849	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361624	exon1	c.A946G	p.T316A	ATCCCCACCGGCG	.	71	59	28	0	.	145634	40201	105073	255	105	1
COX2	5743	broad.mit.edu;bcgsc.ca	37	MT	7994	7994	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361739	exon1	c.G409A	p.D137N	CTCCTTGACGTTG	.	68	51	35	0	.	188136	46093	141937	43	61	2
TTF2	8458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	117618146	117618146	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTF2-91	NM_003594	exon5	c.C940G	p.Q314E	CATTTCCAAGAGC	.	101	48	114	0	.	0	0	0	0	0	5
NBPF7	343505	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	120378701	120378701	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NBPF7-24	NM_001047980	exon7	c.G1045C	p.E349Q	TCTGTTCAACTAG	.	129	56	173	0	.	0	0	0	0	0	4
TXNIP	10628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	145441200	145441202	+	In_Frame_Del	DEL	CAA	CAA	-	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	CAA	CAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TXNIP-92	NM_006472	exon8	c.1158_1160del	p.386_387del	CATCCTCAACAAC	.	108	25	98	0	.	0	0	0	0	0	3
NME7	29922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	169292366	169292366	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NME7-514	NM_013330	exon3	c.T267C	p.S89S	TTTCCTACTGCCC	.	32	13	50	0	.	1	1	0	0	0	5
PAPPA2	60676	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	176679229	176679229	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAPPA2-548	NM_020318	exon11	c.C3568G	p.Q1190E	TTGGATCAATGGG	.	128	52	193	1	.	0	0	0	0	0	3
ELK4	2005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205592890	205592890	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ELK4-658	NM_021795	exon2	c.G121T	p.V41L	GAGCCACCTCTTC	.	114	50	179	0	.	4	1	3	0	0	5
PGBD2	267002	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	249211953	249211953	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PGBD2-91	NM_170725	exon3	c.G1170C	p.L390L	AGAACTGAAAAAA	.	93	36	127	1	.	2	0	2	0	0	3
TAF3	83860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	8006163	8006163	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAF3-69	NM_031923	exon3	c.A690G	p.P230P	TTCTCCAGTCCAT	.	222	44	183	0	.	11	10	1	0	0	5
ARHGAP21	57584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	24909959	24909959	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGAP21-235	NM_020824	exon9	c.A865G	p.N289D	GGTTGTTTCTATT	.	429	93	285	0	.	3	2	1	0	0	5
ZEB1	6935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	31810238	31810238	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZEB1-518	NM_001174096	exon7	c.A1978C	p.N660H	AAGAACAATGATC	.	145	45	87	0	.	6	5	1	0	0	5
NEURL	9148	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105330702	105330702	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NEURL-226	NM_004210	exon2	c.G159T	p.L53L	AGTGCTGCCCAGC	.	210	55	221	1	.	2	2	0	0	0	3
PNLIP	5406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118307963	118307963	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PNLIP-92	NM_000936	exon4	c.G293A	p.G98E	ACAAGGGAGAAGA	.	131	31	117	0	.	0	0	0	0	0	5
BTBD16	118663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124089066	124089066	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BTBD16-91	NM_144587	exon11	c.G983A	p.R328H	GCTTGCGTCTGCA	.	71	28	58	0	.	1	1	0	0	0	5
EBF3	253738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	131639127	131639127	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EBF3-91	NM_001005463	exon14	c.C1515T	p.S505S	GTTAGCGGAGGAG	.	64	15	89	0	.	0	0	0	0	0	5
LRRC4C	57689	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	40136210	40136210	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC4C-521	NM_001258419	exon7	c.G1633C	p.V545L	AAATGACCAGCAT	.	143	11	169	0	.	6	6	0	0	0	3
PPME1	51400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73957234	73957234	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001271593	exon10	c.A990G	p.K330K	TCCTAAATTGCTG	.	66	63	70	0	.	22	0	22	0	0	5
CD163L1	283316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7531782	7531782	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CD163L1-100	NM_174941	exon9	c.G2163T	p.M721I	AATGTTCATTCCC	.	141	28	110	0	.	1	1	0	0	0	5
EPS8	2059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	15823815	15823815	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPS8-94	NM_004447	exon4	c.C179T	p.S60L	ATATCTGACACAC	.	120	32	112	0	.	3	3	0	0	0	5
KRT72	140807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52980754	52980754	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRT72-96	NM_001146225	exon8	c.G1321A	p.E441K	GATATTCGCCAGA	.	242	50	185	0	.	0	0	0	0	0	5
TMEM132C	92293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	129100821	129100821	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM132C-68	NM_001136103	exon4	c.G1246A	p.A416T	GACATCGCCGTGT	.	264	77	212	0	.	0	0	0	0	0	5
CEP128	145508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	81209477	81209477	+	Silent	SNP	G	G	C	rs201355718	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CEP128-91	NM_152446	exon18	c.C2748G	p.L916L	TTGAAAGAGACAC	.	102	20	40	0	G|0.999;C|0.001	4	4	0	0	0	4
DIO3	1735	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102028383	102028383	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DIO3-494	.	.	.	.	CGCCTGGTCACTA	.	100	22	57	0	.	0	0	0	0	0	4
PTPN9	5780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75782617	75782617	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPN9-226	NM_002833	exon8	c.C994G	p.R332G	CATAACGGTTTTT	.	110	54	121	0	.	14	7	7	0	0	5
BFAR	51283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	14761544	14761544	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BFAR-92	NM_016561	exon8	c.C1213A	p.L405I	CAGGGGCTTTTTG	.	92	41	85	0	.	37	24	13	0	0	5
CTRL	1506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67963838	67963838	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTRL-90	NM_001907	exon7	c.G794C	p.X265S	TGAGCTCAGTTGT	.	82	19	54	0	.	2	0	2	0	0	5
GFAP	2670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42989105	42989105	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GFAP-516	NM_001131019	exon5	c.G841T	p.E281X	TGGCTTCGTGCTT	.	86	70	106	0	.	0	0	0	0	0	5
PRKAR1A	5573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	66521052	66521052	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRKAR1A-1141	NM_212471	exon6	c.503-1G>A	.	CTTTTAGGTGATG	.	34	18	67	0	.	2	2	0	0	0	4
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9066010	9066010	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUC16-566	NM_024690	exon3	c.G21436C	p.E7146Q	CAAGTTCTGGGCT	.	489	216	326	0	.	0	0	0	0	0	5
LDLR	3949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11234004	11234004	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LDLR-94	NM_001195798	exon15	c.G2295C	p.V765V	GATAGTGACAATG	.	134	27	72	0	.	474	343	131	0	0	5
RNASEH2A	10535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12918306	12918306	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RNASEH2A-524	NM_006397	exon4	c.G397T	p.V133L	CAGGGCGTGAACG	.	296	134	188	0	.	25	13	12	0	0	5
RAD23A	5886	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13063541	13063541	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAD23A-227	NM_005053	exon8	c.G852A	p.L284L	GATGCTGAACGAG	.	151	36	123	0	.	187	122	65	0	0	4
ZFP112	7771	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44832623	44832623	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFP112-95	NM_001083335	exon5	c.C1705G	p.Q569E	GGGCTTGAAGATA	.	108	13	74	1	.	14	11	3	0	0	3
GIPR	2696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46176189	46176189	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GIPR-523	NM_000164	exon5	c.C361T	p.P121S	GAGAACCCAGAGA	.	151	30	115	0	.	0	0	0	0	0	5
SLC1A5	6510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	47278856	47278856	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC1A5-90	NM_005628	exon8	c.C1537G	p.P513A	CAGTGGGGACTGG	.	112	17	101	0	.	0	0	0	0	0	4
NLRP12	91662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54313435	54313435	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRP12-211	NM_144687	exon3	c.A1478T	p.N493I	AGGAAGGCAGAGA	.	257	41	157	0	.	0	0	0	0	0	5
NLRP9	338321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56226564	56226564	+	Silent	SNP	G	G	C	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRP9-294	NM_176820	exon6	c.C2358G	p.V786V	ACAGGAGACAGAG	.	170	30	130	0	.	0	0	0	0	0	5
ZNF135	7694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58579299	58579299	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF135-91	NM_007134	exon4	c.C1519A	p.Q507K	CTCACCCAACACC	.	204	44	128	0	.	0	0	0	0	0	5
PTPN4	5775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	120640081	120640081	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPN4-228	NM_002830	exon8	c.G469A	p.E157K	TTAGCTGAACTTG	.	116	60	113	0	.	0	0	0	0	0	5
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179581920	179581920	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_001267550	exon88	c.C25541T	p.T8514I	AGAACTGTCAGAG	.	67	34	114	0	.	0	0	0	0	0	5
RAPH1	65059	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	204305290	204305290	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAPH1-1151	NM_213589	exon14	c.C2623G	p.P875A	CAGGGGGAGTTGG	.	33	22	58	1	.	2	0	2	0	0	4
UNC80	285175	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	210705361	210705361	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UNC80-90	NM_032504	exon20	c.C3352A	p.Q1118K	ATCAGGCAAAGCT	.	94	8	127	0	.	0	0	0	0	0	3
RHBDD1	84236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	227729481	227729481	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RHBDD1-91	NM_001167608	exon4	c.C72T	p.I24I	TGGGATCAACAAT	.	102	42	163	0	.	5	4	1	0	0	5
ILKAP	80895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	239079640	239079640	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ILKAP-118	NM_030768	exon11	c.C982A	p.L328I	TGAAGAGCCCATC	.	141	67	174	0	.	50	26	23	0	1	5
PAK7	57144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9538346	9538346	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAK7-1434	NM_177990	exon7	c.C1652A	p.S551X	AGAACTGACAGGC	.	73	29	82	0	.	1	0	1	0	0	5
PDE9A	5152	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	44185575	44185575	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDE9A-92	NM_002606	exon15	c.G1327C	p.D443H	AATTTTGACTACA	.	306	77	312	1	.	43	31	12	0	0	4
OR11H1	81061	broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	16449102	16449102	+	Missense_Mutation	SNP	G	G	C	rs76160964	unknown;alternate_allele	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR11H1-22	NM_001005239	exon1	c.C703G	p.L235V	GGACAAGAGTATA	.	513	147	431	0	T|1.000;|0.000	0	0	0	0	0	3
CSN1S1	1446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	70802862	70802862	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001890	exon8	c.G219T	p.Q73H	TACTCAGGTGAGA	.	239	43	128	0	.	0	0	0	0	0	5
CSN1S1	1446	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	70810573	70810573	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001890	exon15	c.C408A	p.F136L	GCCTTTCCAGCAG	.	254	70	151	1	.	0	0	0	0	0	4
METTL14	57721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	119626935	119626935	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	METTL14-90	NM_020961	exon10	c.G1025A	p.R342K	GTAGAAGACGCCT	.	87	21	56	0	.	10	10	0	0	0	5
TRIM60	166655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	165962195	165962195	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRIM60-226	NM_001258025	exon4	c.G971A	p.R324Q	AAAAACGAAACAT	.	154	33	118	0	.	0	0	0	0	0	5
MAST4	375449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	66462103	66462103	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAST4-647	NM_001164664	exon29	c.G7096A	p.D2366N	AACACCGACAGAA	.	135	33	96	0	.	21	15	6	0	0	5
CENPH	64946	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	68485476	68485476	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CENPH-153	NM_022909	exon1	c.C15G	p.P5P	GCAGCCCCAGATG	.	51	12	32	0	.	1	0	1	0	0	3
CAMK4	814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	110819981	110819981	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CAMK4-386	NM_001744	exon11	c.C1239A	p.A413A	AGAGGCCCCCAAA	.	127	39	109	0	.	0	0	0	0	0	5
AQPEP	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	115336915	115336915	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_173800	exon10	c.A1799G	p.N600S	TTAAAAATCGGAC	.	376	100	220	0	.	0	0	0	0	0	5
NIPAL4	348938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156899852	156899852	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NIPAL4-68	NM_001099287	exon6	c.G1285A	p.A429T	TCTCCCGCCCCGG	.	95	46	45	0	.	0	0	0	0	0	5
ADAMTS2	9509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178608155	178608155	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS2-228	NM_021599	exon5	c.T893C	p.V298A	TCATTGACCTGAA	.	240	69	140	0	.	0	0	0	0	0	5
CD83	9308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	14131769	14131769	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CD83-90	NM_004233	exon3	c.G172C	p.E58Q	GGTGAAGAGAGGA	.	127	46	132	0	.	59	34	25	0	0	5
HIST1H1E	3008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26156922	26156922	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIST1H1E-154	NM_005321	exon1	c.T304A	p.S102T	GGCGCGTCGGGTT	.	124	64	160	0	.	3	1	2	0	0	5
USP42	84132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	6175530	6175530	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP42-659	NM_032172	exon4	c.C501G	p.L167L	GGCACTCAGTAAT	.	195	34	143	0	.	2	2	0	0	0	5
ZMIZ2	83637	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44802986	44802986	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZMIZ2-137	NM_031449	exon13	c.C1834T	p.R612X	CCTGCCCGAGGTC	.	299	41	140	1	.	54	50	4	0	0	3
MCM7	4176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99697290	99697290	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MCM7-651	NM_005916	exon3	c.T198A	p.I66I	CTCACAAATTGAG	.	38	6	55	0	.	23	15	8	0	0	4
TAS2R5	54429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141490447	141490447	+	Missense_Mutation	SNP	G	G	T	rs142196311	unknown;alternate_allele	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAS2R5-90	NM_018980	exon1	c.G286T	p.A96S	TGGTTTGCCACCT	.	118	31	138	0	G|1.000;A|0.000	0	0	0	0	0	5
NOS3	4846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150696313	150696313	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOS3-1011	NM_001160111	exon8	c.A992G	p.Y331C	GCTGGTACGCCCT	.	65	36	57	0	.	5	2	3	0	0	5
NEFL	4747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	24811264	24811264	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NEFL-24	NM_006158	exon3	c.G1215A	p.V405V	GCTTCCCACGCTG	.	65	52	86	0	.	215	0	215	0	0	5
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	69020559	69020559	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PREX2-390	NM_024870	exon24	c.G2931A	p.S977S	ATCTTCGGAGCAA	.	63	22	74	0	.	0	0	0	0	0	5
GNE	10020	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	36217454	36217454	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GNE-115	NM_001128227	exon12	c.G2170C	p.D724H	CCACGTCCTGCAC	.	140	50	169	1	.	31	20	11	0	0	3
CXorf21	80231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	30577888	30577888	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CXorf21-131	NM_025159	exon3	c.G585A	p.E195E	GCTTTTCTCTTTG	.	147	38	87	0	.	0	0	0	0	0	5
CXorf21	80231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	30577890	30577890	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CXorf21-131	NM_025159	exon3	c.G583A	p.E195K	TTTTCTCTTTGAT	.	146	36	87	0	.	0	0	0	0	0	5
HS6ST2	90161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	132090979	132090979	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HS6ST2-130	NM_001077188	exon3	c.C804A	p.H268Q	CGGCCGGTGGCAA	.	519	111	256	0	.	0	0	0	0	0	5
L1CAM	3897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153133282	153133282	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	L1CAM-138	NM_000425	exon15	c.G1912T	p.A638S	CTTCTGCAGGACT	.	177	34	125	0	.	14	14	0	0	0	5
C16orf11	146325	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	615240	615241	+	In_Frame_Ins	INS	-	-	GACGAGGAGTTCCCA	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C16orf11-23	NM_145270	exon3	c.1649_1650insGACGAGGAGTTCCCA	p.A550delinsATRSSQ	GTGTTGCGACGAG	.	265	13	151	0	.	0	0	0	0	0	3
IGSF3	3321	broad.mit.edu	37	1	117142736	117142736	+	Missense_Mutation	SNP	A	A	G	rs75067537	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGSF3-92	NM_001542	exon8	c.T1916C	p.I639T	TTCTCGATGGCAG	.	79	9	104	1	A|0.500;G|0.500	18	11	7	0	0	1
HNRNPA1	3178	broad.mit.edu;ucsc.edu	37	12	54677695	54677695	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HNRNPA1-93	NM_031157	exon9	c.G1007C	p.R336T	GAGGCAGAAGCTC	.	23	5	15	0	.	2572	1960	610	1	1	2
SH3GL1	6455	broad.mit.edu	37	19	4361787	4361787	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SH3GL1-659	NM_003025	exon10	c.T917G	p.L306R	TGGTCCAGGGGCG	.	52	7	13	0	.	4	2	2	0	0	1
POFUT2	23275	broad.mit.edu;mdanderson.org	37	21	46707762	46707762	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POFUT2-90	NM_015227	exon1	c.C25T	p.L9L	GCAGCAGGAAGAC	.	22	8	13	0	.	44	27	17	0	0	2
ZDHHC14	79683	bcgsc.ca	37	6	158074629	158074629	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZDHHC14-227	NM_024630	exon8	c.G1038A	p.M346I	CACCATGTACGGG	.	51	45	84	2	.	4	2	2	0	0	1
KIAA1958	158405	ucsc.edu;bcgsc.ca	37	9	115421992	115421992	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1958-91	NM_133465	exon4	c.G1794A	p.T598T	CCGGACGGACAGC	.	165	75	194	2	.	5	3	2	0	0	2
CTH	1491	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	70904780	70904784	+	Frame_Shift_Del	DEL	ATAGC	ATAGC	-	novel	unknown	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	ATAGC	ATAGC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTH-91	NM_001902	exon12	c.1192_1192del	p.398_398del	GTTATTATAGCAC	.	84	33	132	0	.	0	0	0	0	0	3
RGL1	23179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183867009	183867009	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RGL1-725	NM_015149	exon11	c.G1313T	p.R438L	AGAGGCGGCTGCA	.	119	60	142	0	.	25	4	21	0	0	5
MKI67	4288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	129913821	129913821	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MKI67-519	NM_002417	exon7	c.C851A	p.T284N	AGTTGGGTCTCCC	.	69	40	88	0	.	0	0	0	0	0	5
ANO5	203859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	22279254	22279254	+	Missense_Mutation	SNP	C	C	T	rs148698633	unknown	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANO5-515	NM_213599	exon14	c.C1361T	p.T454M	TATACACGCGTAT	.	87	42	107	0	C|1.000;T|0.000	6	0	6	0	0	5
TNFRSF1A	7132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6439136	6439136	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNFRSF1A-659	NM_001065	exon9	c.C865G	p.P289A	AACTGGGCACGGG	.	38	14	30	0	.	319	185	134	0	0	5
LRIG3	121227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	59268001	59268001	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRIG3-229	NM_153377	exon18	c.G2951A	p.S984N	CTGAAGCTCCGTT	.	227	76	181	0	.	14	8	6	0	0	5
PPFIA3	8541	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	49645325	49645325	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPFIA3-226	NM_003660	exon20	c.C2497G	p.L833V	CAGGGCCTACCTT	.	97	6	74	0	.	5	5	0	0	0	3
C2orf54	79919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241835134	241835134	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C2orf54-90	NM_001085437	exon1	c.T281C	p.I94T	TCCTCAATCAGTA	.	186	118	196	0	.	0	0	0	0	0	5
MANBAL	63905	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35944722	35944722	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MANBAL-90	NM_001003897	exon3	c.G162A	p.P54P	TGAACCGTCTGAG	.	335	107	265	1	.	0	0	0	0	0	4
RAPGEF5	9771	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	22348060	22348060	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAPGEF5-206	NM_012294	exon5	c.A119G	p.Y40C	TACAAGTAGCTAC	.	117	7	62	0	.	0	0	0	0	0	3
COBL	23242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	51111334	51111334	+	Silent	SNP	C	C	A	novel	unknown	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COBL-95	NM_015198	exon8	c.G1152T	p.V384V	TGACAGCACCTGC	.	104	43	81	0	.	0	0	0	0	0	5
PALM2-AKAP2	445815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	112899504	112899504	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PALM2-AKAP2-475	NM_007203	exon8	c.A1680T	p.Q560H	CAAACAATTTCAG	.	70	13	96	0	.	26	18	8	0	0	4
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	137676893	137676893	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL5A1-524	NM_000093	exon30	c.G2543A	p.R848H	AGGGTCGCGGAGG	.	56	7	59	0	.	9	6	3	0	0	4
RBBP7	5931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	16871808	16871808	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBBP7-227	NM_001198719	exon6	c.T887C	p.M296T	TACATCATAAGTT	.	117	39	87	0	.	5	0	5	0	0	5
PNKP	11284	broad.mit.edu	37	19	50370408	50370408	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PNKP-253	NM_007254	exon2	c.A54G	p.G18G	GGGCGCTCCCCCA	.	98	25	34	1	.	42	39	3	0	0	1
CTSL1	1514	ucsc.edu;bcgsc.ca	37	9	90346015	90346015	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CTSL1-93	NM_145918	exon8	c.C995G	p.T332S	ACCCCACTGTGTG	.	89	49	124	2	.	325	49	276	0	0	2
OR51D1	390038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4661767	4661767	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR51D1-68	NM_001004751	exon1	c.G747T	p.K249N	ACTCAAGGCTTTC	.	80	69	99	0	.	0	0	0	0	0	5
KLRB1	3820	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	9751229	9751229	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLRB1-90	NM_002258	exon4	c.T280A	p.C94S	TTGGGCAGTTTAA	.	152	11	97	0	.	5	5	0	0	0	3
GNAL	2774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	11752854	11752854	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GNAL-228	NM_182978	exon2	c.G379A	p.A127T	GCAGGGGCTGGTG	.	112	86	94	0	.	0	0	0	0	0	5
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9063253	9063253	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUC16-566	NM_024690	exon3	c.A24193G	p.S8065G	CAGAACTGGAGGT	.	165	113	245	0	.	0	0	0	0	0	5
RUNX1	861	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	36259202	36259202	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RUNX1-5146	NM_001754	exon4	c.T289C	p.F97L	AGAGGAAGTTGGG	.	104	23	76	0	.	0	0	0	0	0	4
RBM6	10180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	50005492	50005492	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBM6-280	NM_005777	exon3	c.C634T	p.R212C	CAGTCCCGTTCTG	.	77	17	123	0	.	9	5	4	0	0	5
HLTF	6596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	148763873	148763873	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HLTF-659	NM_139048	exon18	c.T2066C	p.I689T	CTTCCAATAGTGG	.	92	65	122	0	.	0	0	0	0	0	5
SH3BGRL2	83699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	80406276	80406276	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SH3BGRL2-226	NM_031469	exon3	c.A306G	p.A102A	GTTGGCATCAAAG	.	55	14	61	0	.	0	0	0	0	0	5
HSF1	3297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145535011	145535011	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HSF1-46	NM_005526	exon6	c.T569A	p.I190N	AGCTCATTCAGTT	.	79	27	50	0	.	2	1	1	0	0	5
GLIS2	84662	broad.mit.edu	37	16	4386949	4386949	+	Silent	SNP	A	A	C	novel	unknown	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GLIS2-90	NM_032575	exon6	c.A999C	p.P333P	GCGCCCACCCCCC	.	119	24	31	1	.	19	12	7	0	0	1
EIF2B5	8893	broad.mit.edu;bcgsc.ca	37	3	183853220	183853220	+	Missense_Mutation	SNP	C	C	T	rs113994041	unknown;alternate_allele	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EIF2B5-95	NM_003907	exon1	c.C47T	p.A16V	GTCGGGCTAACAA	.	95	5	50	0	.	9	7	2	0	0	2
ND5	0	broad.mit.edu	37	MT	12913	12913	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361567	exon1	c.T577C	p.S193P	CTACACTCCAACT	.	64	5	21	0	.	1791	1628	161	2	0	1
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	42047867	42047867	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIVEP3-157	NM_024503	exon4	c.G2602T	p.D868Y	CTGTGTCCGGCCG	.	69	10	68	0	.	0	0	0	0	0	4
ARHGAP32	9743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	128857997	128857997	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGAP32-231	NM_001142685	exon12	c.A1177G	p.T393A	ATGCTGTGCAGCT	.	30	8	35	0	.	0	0	0	0	0	4
CDH8	1006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	61851433	61851433	+	Silent	SNP	C	C	G	novel	unknown	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH8-161	NM_001796	exon7	c.G1227C	p.V409V	CCCAATCACGGAG	.	242	91	153	0	.	2	2	0	0	0	5
ZNF534	147658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52941934	52941934	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF534-68	NM_001143939	exon4	c.G1260A	p.G420G	TGGGGGGAGGCGT	.	149	36	98	0	.	0	0	0	0	0	5
SLC27A5	10998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	59010241	59010241	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC27A5-90	NM_012254	exon9	c.C1807G	p.P603A	GGCCGGGGGCTAG	.	182	76	90	0	.	21	16	5	0	0	5
SDCBP2	27111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1293253	1293253	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SDCBP2-154	NM_080489	exon6	c.A538G	p.I180V	CGACAATCTTATC	.	241	75	191	0	.	4	2	2	0	0	5
SI	6476	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	164783069	164783069	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SI-104	NM_001041	exon7	c.C787T	p.R263X	GGTCTCGAGTAAA	.	211	96	154	1	.	0	0	0	0	0	4
SEC24D	9871	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	119653957	119653957	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEC24D-90	NM_014822	exon20	c.G2607C	p.Q869H	CTGTCTCTGGTAT	.	366	75	256	1	.	13	11	2	0	0	4
CDKL3	51265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	133640095	133640095	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDKL3-389	NM_001113575	exon12	c.1621+1G>T	.	TGTGTACCTTCCA	.	126	40	68	0	.	0	0	0	0	0	4
EP400	57634	broad.mit.edu	37	12	132547129	132547129	+	Silent	SNP	G	G	A	rs138819442	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EP400-520	NM_015409	exon47	c.G8217A	p.Q2739Q	GCAGCAGCAGCAG	.	321	15	195	0	G|1.000;A|0.000	29	20	9	0	0	1
PKD1	5310	broad.mit.edu	37	16	2152129	2152129	+	Silent	SNP	A	A	G	rs79276175	unknown	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKD1-91	NM_000296	exon26	c.T9330C	p.P3110P	ACAGAAAGGGATG	.	318	44	87	1	A|0.500;G|0.500	30	3	27	0	0	1
PPP2R1A	5518	broad.mit.edu	37	19	52714629	52714629	+	Silent	SNP	G	G	T	novel	unknown	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPP2R1A-1666	NM_014225	exon4	c.G387T	p.V129V	CTTTGTGCCGCTA	.	158	7	43	0	.	280	253	25	1	1	1
ND5	0	broad.mit.edu	37	MT	13182	13182	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361567	exon1	c.T846C	p.A282A	AGGCGCTATCACC	.	85	6	17	0	.	1467	1324	142	0	1	1
OR2C3	81472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247694861	247694861	+	Missense_Mutation	SNP	G	G	A	rs147306837	unknown;alternate_allele	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2C3-70	NM_198074	exon2	c.C953T	p.A318V	ATTTGCGCCAGCT	.	93	86	152	1	G|1.000;T|0.000	0	0	0	0	0	4
SMC3	9126	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	112357947	112357947	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMC3-92	NM_005445	exon20	c.A2167G	p.T723A	ATCGAGACCCAGC	.	73	19	71	1	.	12	9	3	0	0	3
MEN1	4221	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	64577330	64577333	+	Frame_Shift_Del	DEL	AGAC	AGAC	-	novel	unknown	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	AGAC	AGAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MEN1-3017	NM_130800	exon2	c.249_252del	p.83_84del	GATGATAGACAGG	.	81	67	167	0	.	0	0	0	0	0	3
ATM	472	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	108142086	108142098	+	Frame_Shift_Del	DEL	CACAAGGGATGCT	CACAAGGGATGCT	-	novel	unknown	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	CACAAGGGATGCT	CACAAGGGATGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATM-3419	NM_000051	exon20	c.3030_3042del	p.1010_1014del	TGAGAACACAAGG	.	35	25	156	0	.	0	0	0	0	0	3
ZW10	9183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	113631587	113631587	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZW10-228	NM_004724	exon3	c.G294T	p.Q98H	TTCCAACTGCTGC	.	89	81	153	0	.	2	0	2	0	0	5
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85449577	85449577	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRIQ1-95	NM_001079910	exon8	c.C1006T	p.R336X	GAAAATCGAAAAA	.	146	75	102	0	.	0	0	0	0	0	5
TTC25	83538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40093013	40093013	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTC25-23	NM_031421	exon5	c.460-2A>G	.	TTTCTCAGAATAT	.	85	38	79	0	.	0	0	0	0	0	4
SLC25A19	60386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73282384	73282384	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC25A19-91	NM_021734	exon5	c.288+1G>A	.	CACCTACTTGGAC	.	113	19	93	0	.	0	0	0	0	0	4
NLRP11	204801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	56296996	56296996	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRP11-169	NM_145007	exon12	c.C3097A	p.L1033I	ATCAAAGGGGTTG	.	369	170	318	0	.	0	0	0	0	0	4
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	116497402	116497402	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DPP10-142	NM_001178034	exon9	c.C797A	p.P266H	TGGTACCCACCAT	.	235	20	419	0	.	0	0	0	0	0	3
DDX18	8886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	118582643	118582643	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DDX18-290	NM_006773	exon9	c.T1334C	p.L445P	AGTTGCTGAACTA	.	147	57	202	0	.	6	3	3	0	0	5
WDR6	11180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49050657	49050657	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDR6-90	NM_018031	exon2	c.C1780A	p.P594T	ACCCTGCCCTCTC	.	89	57	132	0	.	116	26	90	0	0	5
ROBO1	6091	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	78680354	78680354	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ROBO1-67	NM_002941	exon25	c.C3583G	p.P1195A	TGTGTGGAGGAGG	.	144	38	206	2	.	2	2	0	0	0	3
RNF139	11236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	125498340	125498340	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RNF139-226	NM_007218	exon2	c.C450G	p.I150M	TTCCATCTATTCA	.	106	6	249	0	.	4	4	0	0	0	3
TSNARE1	203062	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	143396409	143396409	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TSNARE1-90	NM_145003	exon8	c.A1029C	p.K343N	CTGGGTTTTCAGC	.	150	134	294	2	.	0	0	0	0	0	3
MORN5	254956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	124936830	124936830	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MORN5-90	NM_198469	exon4	c.C363G	p.Y121X	CTATTACGATTGT	.	146	31	112	0	.	7	7	0	0	0	5
SAPCD2	89958	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	139959388	139959388	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_178448	exon5	c.C983T	p.T328M	GTGGACGTCAGGG	.	92	42	39	0	.	7	5	2	0	0	4
POLA1	5422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24844592	24844592	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POLA1-229	NM_016937	exon32	c.C3592T	p.L1198L	GAGCAGCTGCAGA	.	88	79	96	0	.	2	0	2	0	0	5
DIAPH2	1730	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	96603202	96603202	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DIAPH2-133	NM_007309	exon24	c.T2932C	p.Y978H	GGAGAATACTTCA	.	169	166	127	2	.	5	0	5	0	0	3
PGAP2	27315	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	3846588	3846589	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PGAP2-90	NM_001256236	exon8	c.1019_1020insT	p.T340fs	AGTACACTGTTGT	.	154	143	241	0	.	0	0	0	0	0	3
SCAF11	9169	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	46328052	46328053	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCAF11-93	NM_004719	exon8	c.539_540insT	p.W180fs	GTACTCCAATTTG	.	96	38	92	0	.	0	0	0	0	0	3
THAP11	57215	hgsc.bcm.edu	37	16	67876796	67876796	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	THAP11-90	NM_020457	exon1	c.A339G	p.Q113Q	GCAGCAACAGCAG	.	31	5	13	0	.	18	7	11	0	0	1
THAP11	57215	hgsc.bcm.edu;ucsc.edu	37	16	67876805	67876805	+	Silent	SNP	A	A	G	rs28434205	bycluster;byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	THAP11-90	NM_020457	exon1	c.A348G	p.Q116Q	GCAGCAACAGCAG	.	30	12	16	0	A|0.991;G|0.009	41	5	36	0	0	2
OGFR	11054	hgsc.bcm.edu	37	20	61444569	61444569	+	Silent	SNP	A	A	G	rs3204348	byfrequency;by1000genomes	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OGFR-68	NM_007346	exon7	c.A1602G	p.P534P	CGAGCCAGCCGAG	.	44	7	29	0	A|0.979;G|0.021	189	165	24	0	0	1
CROCC	9696	broad.mit.edu;ucsc.edu;mdanderson.org	37	1	17274918	17274918	+	Silent	SNP	T	T	G	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CROCC-137	NM_014675	exon18	c.T2607G	p.R869R	GGCCCGTGAGAAG	.	85	46	18	1	.	4	0	4	0	0	3
CELA3B	23436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22304887	22304887	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CELA3B-91	NM_007352	exon2	c.T69C	p.S23S	TTCCTCTCGCCCT	.	118	72	169	0	.	0	0	0	0	0	5
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197071136	197071136	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASPM-615	NM_018136	exon18	c.G7245C	p.Q2415H	CCTACTCTGAATA	.	46	28	74	0	.	1	0	1	0	0	5
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55943228	55943228	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH15-193	NM_001142763	exon14	c.G1581A	p.M527I	AGGTCTCATGTCT	.	185	73	127	0	.	0	0	0	0	0	5
FADD	8772	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	70049689	70049689	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FADD-660	NM_003824	exon1	c.G124C	p.G42R	CAGAGCGGCCTAG	.	121	78	111	1	.	9	0	9	0	0	3
C2CD2L	9854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	118986791	118986791	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C2CD2L-68	NM_014807	exon14	c.G1949T	p.R650L	TCTTCCGCCGGAG	.	53	4	81	0	.	7	7	0	0	0	3
KIAA1551	55196	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	32136338	32136338	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_018169	exon4	c.G2449T	p.D817Y	AAAGTTGATGTTA	.	98	5	85	0	.	5	5	0	0	0	3
CPSF6	11052	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	69646896	69646896	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CPSF6-226	NM_007007	exon3	c.336delA	p.I112fs	GGAGATAAAATTT	.	160	77	164	0	.	0	0	0	0	0	3
PCCA	5095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	100925450	100925450	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCCA-227	NM_001178004	exon12	c.C915A	p.S305R	ATGTAGCATTTTT	.	39	20	61	0	.	0	0	0	0	0	5
NOVA1	4857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	26917292	26917292	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOVA1-229	NM_002515	exon5	c.G1397A	p.G466D	CTTGTGCCAGGTA	.	274	116	234	0	.	5	1	4	0	0	5
SERPINA3	12	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	95085645	95085645	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SERPINA3-653	NM_001085	exon3	c.T757C	p.Y253H	ATACCTTACTTCC	.	351	29	258	0	.	77	75	2	0	0	3
FAM219B	57184	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	75195092	75195092	+	Silent	SNP	C	C	T	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_020447	exon5	c.G465A	p.Q155Q	CCCATCCTGAAGC	.	107	7	151	0	.	48	46	2	0	0	3
OR4F15	390649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	102359139	102359139	+	Missense_Mutation	SNP	C	C	A	rs149793188	byfrequency;alternate_allele	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4F15-68	NM_001001674	exon1	c.C750A	p.F250L	CTTGTTCTTTGGG	.	82	6	139	0	C|1.000;T|0.000	0	0	0	0	0	3
C19orf71	100128569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	3543552	3543552	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001135580	exon3	c.323-1G>C	.	ACCGCAGCCTACA	.	74	21	18	0	.	0	0	0	0	0	3
KEAP1	9817	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10610253	10610253	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KEAP1-637	NM_012289	exon2	c.C457G	p.L153V	CGTGGAGGACACA	.	487	104	277	1	.	52	50	2	0	0	3
MYO9B	4650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17311225	17311225	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO9B-67	NM_001130065	exon25	c.G4362C	p.K1454N	GAAGAAGGGCCTG	.	235	64	122	0	.	0	0	0	0	0	5
NLRP9	338321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56243992	56243992	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRP9-294	NM_176820	exon2	c.G1205A	p.G402E	CAAATTCCCTCTG	.	69	23	76	0	.	0	0	0	0	0	5
NCK2	8440	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	106471685	106471685	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NCK2-415	NM_001004720	exon2	c.G166A	p.V56M	AACTACGTGGAGC	.	146	110	209	2	.	14	4	10	0	0	3
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179427229	179427229	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_001267550	exon326	c.G83630A	p.R27877H	GTATTACGGGTCA	.	81	54	138	0	.	0	0	0	0	0	5
PLCB1	23236	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	8782728	8782728	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLCB1-297	NM_182734	exon32	c.A3449T	p.Y1150F	TCTTGTCGGAAAC	.	93	23	91	1	.	0	0	0	0	0	4
UBA5	79876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132387706	132387706	+	Silent	SNP	T	T	C	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBA5-226	NM_024818	exon4	c.T342C	p.N114N	TATGAATAGACTT	.	100	48	72	0	.	31	12	19	0	0	5
INPP4B	8821	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	143324112	143324112	+	Silent	SNP	G	G	A	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	INPP4B-228	NM_003866	exon8	c.C351T	p.V117V	ATCCTTGACATCA	.	157	45	114	1	.	8	2	6	0	0	4
ZNF474	133923	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	121488085	121488085	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF474-90	NM_207317	exon2	c.C400A	p.P134T	AGGAGGCCAGAAC	.	157	50	73	1	.	0	0	0	0	0	3
LMNB1	4001	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	126113295	126113297	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LMNB1-226	NM_005573	exon1	c.95_97del	p.32_33del	TCCAGGAGAAGGA	.	260	61	59	0	.	0	0	0	0	0	3
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170640671	170640671	+	Silent	SNP	T	T	A	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RANBP17-524	NM_022897	exon21	c.T2268A	p.V756V	TGCTGTTGAACGG	.	234	65	101	0	.	6	6	0	0	0	5
HOXA9	3205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	27203337	27203337	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HOXA9-1082	NM_152739	exon2	c.G704C	p.R235P	TACCTGCGGTCCC	.	143	56	119	0	.	1	0	1	0	0	5
CNTNAP2	26047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	146805372	146805372	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTNAP2-100	NM_014141	exon5	c.A684G	p.G228G	GCACGGAGAAGGA	.	153	67	114	0	.	0	0	0	0	0	5
KRBA1	84626	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	149427272	149427272	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRBA1-91	.	.	.	.	TGCCTGGAGAGCG	.	150	51	87	1	.	1	0	1	0	0	3
ABCB8	11194	ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150731630	150731630	+	Silent	SNP	C	C	T	rs114212581	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCB8-108	NM_007188	exon4	c.C603T	p.H201H	GTCCCACGTTGGC	.	86	40	63	1	C|0.989;T|0.011	70	27	43	0	0	3
DMRT2	10655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	1056586	1056586	+	Silent	SNP	A	A	G	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DMRT2-514	NM_181872	exon4	c.A999G	p.R333R	TTATAGACAGTAT	.	152	58	103	0	.	0	0	0	0	0	5
PHF2	5253	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	96435947	96435954	+	Frame_Shift_Del	DEL	GCCTGCAG	GCCTGCAG	-	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	GCCTGCAG	GCCTGCAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHF2-91	NM_005392	exon18	c.2429_2436del	p.810_812del	ACTCCTGCCTGCA	.	215	74	187	0	.	0	0	0	0	0	3
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113168503	113168503	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SVEP1-75	NM_153366	exon38	c.C9377T	p.P3126L	ACAGACGGTGGGG	.	255	124	154	0	.	8	8	0	0	0	5
ATXN3L	92552	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	13337648	13337648	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATXN3L-542	NM_001135995	exon1	c.C406T	p.L136F	CCAAGAGAGAATT	.	100	28	102	1	.	0	0	0	0	0	4
ZRSR2	8233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	15821812	15821812	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZRSR2-133	NM_005089	exon4	c.C205G	p.Q69E	GATAGGCAAAGAT	.	417	147	370	0	.	0	0	0	0	0	5
ARHGAP36	158763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	130218194	130218194	+	Silent	SNP	A	A	T	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGAP36-133	NM_144967	exon5	c.A561T	p.A187A	GGGTGCAGTGTCT	.	130	54	121	0	.	0	0	0	0	0	5
ZNF714	148206	hgsc.bcm.edu;broad.mit.edu	37	19	21300738	21300738	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF714-67	NM_182515	exon5	c.T1268C	p.L423P	AGAAACTCTACAA	.	17	6	9	0	.	449	12	435	2	0	2
CRIPAK	285464	hgsc.bcm.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRIPAK-90	NM_175918	exon1	c.T675C	p.D225D	TGCCGATGCGGAG	.	21	17	9	0	C|1.000;|0.000	12	8	4	0	0	1
ND4	0	broad.mit.edu	37	MT	11825	11825	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361381	exon1	c.G1066A	p.A356T	CTAATAGCTTTTT	.	59	8	17	0	.	20648	15926	4703	13	6	1
ND4	0	broad.mit.edu	37	MT	12113	12113	+	Missense_Mutation	SNP	G	G	A	rs28695839	bycluster;alternate_allele	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361381	exon1	c.G1354A	p.D452N	AACCCCGACATCA	.	48	4	12	0	.	5099	4840	253	6	0	1
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	13121	13121	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361567	exon1	c.G785A	p.R262H	TCATCCGCTTCCA	.	47	20	19	0	.	2102	896	1200	5	1	2
MAP3K8	1326	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	30740635	30740635	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAP3K8-981	NM_001244134	exon5	c.G835A	p.E279K	ATGACCGAAGATG	.	79	7	95	0	.	2	2	0	0	0	3
WDFY4	57705	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	49951215	49951229	+	In_Frame_Del	DEL	GGGACCCTGTCAATG	GGGACCCTGTCAATG	-	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	GGGACCCTGTCAATG	GGGACCCTGTCAATG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDFY4-22	NM_020945	exon12	c.2081_2095del	p.694_699del	TGCACTGGGACCC	.	121	29	194	0	.	0	0	0	0	0	3
MEN1	4221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64574681	64574681	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MEN1-3017	NM_130800	exon5	c.G809A	p.W270X	AGCAGCCAGAGCA	.	23	14	45	0	.	0	0	0	0	0	5
KRT85	3891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52757872	52757872	+	Silent	SNP	G	G	A	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRT85-91	NM_002283	exon4	c.C766T	p.L256L	GCCTCAGGAAGCT	.	157	26	194	0	.	0	0	0	0	0	5
CD63	967	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56119366	56119366	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CD63-90	NM_001257390	exon8	c.A696C	p.R232S	GCCACTTCTGATA	.	113	53	100	1	.	3231	1628	1601	1	1	3
ARL6IP4	51329	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	123465730	123465730	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARL6IP4-90	NM_018694	exon2	c.G413T	p.R138L	GCAGCCGGTCCCG	.	154	14	143	0	.	132	122	10	0	0	3
TDP1	55775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	90450896	90450896	+	Silent	SNP	T	T	C	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TDP1-92	NM_018319	exon9	c.T921C	p.D307D	TGCTGATGGAACC	.	44	24	58	0	.	8	2	6	0	0	5
MGA	23269	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	42042367	42042367	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MGA-522	NM_001164273	exon17	c.6562delG	p.G2188fs	TGTGTTGGAGCTT	.	41	31	76	0	.	0	0	0	0	0	3
USP31	57478	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	23119496	23119496	+	Silent	SNP	C	C	T	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP31-663	NM_020718	exon2	c.G642A	p.V214V	CTTTGACACAATA	.	116	52	126	2	.	0	0	0	0	0	3
CNEP1R1	255919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	50063678	50063678	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_153261	exon4	c.G191T	p.W64L	GTGCCTGGAACTG	.	105	14	97	0	.	14	14	0	0	0	4
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	31324560	31324560	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASXL3-49	NM_030632	exon12	c.C4748T	p.A1583V	AGCAGGCACGTGG	.	28	23	43	0	.	0	0	0	0	0	5
CLPP	8192	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	6364521	6364521	+	Silent	SNP	G	G	A	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLPP-91	NM_006012	exon4	c.G426A	p.P142P	CAACCCGATCTGC	.	186	12	138	0	.	144	140	4	0	0	3
MCOLN1	57192	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7589911	7589911	+	Silent	SNP	T	T	A	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MCOLN1-153	NM_020533	exon2	c.T96A	p.P32P	GGCCCCTCCGACA	.	67	26	71	1	.	79	49	28	2	0	3
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	22171652	22171652	+	Silent	SNP	C	C	T	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF208-7	NM_007153	exon2	c.G63A	p.L21L	AGTGTCCAGGCAT	.	189	22	154	0	.	28	28	0	0	0	4
PPP5C	5536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46857169	46857169	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPP5C-227	NM_006247	exon2	c.A286T	p.I96F	AAGTACATCAAGG	.	248	116	259	1	.	92	49	43	0	0	4
KRTAP25-1	100131902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	31661590	31661590	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001128598	exon1	c.C219A	p.F73L	AGGTTGGAAACTA	.	220	102	279	0	.	0	0	0	0	0	5
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	46932128	46932128	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL18A1-90	NM_030582	exon42	c.C4367T	p.S1456L	ATGGCTCGGACCC	.	565	47	448	0	.	287	278	9	0	0	3
PCDHAC1	56135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140307778	140307778	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHAC1-28	NM_031882	exon1	c.C1301T	p.S434L	CTGTGTCAGTTGC	.	108	49	110	0	.	1	0	1	0	0	5
SAMD5	389432	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	147830225	147830225	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SAMD5-68	NM_001030060	exon1	c.G161A	p.R54H	GCCGCCGTATCCT	.	40	7	59	0	.	0	0	0	0	0	3
GPR141	353345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	37780431	37780431	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR141-93	NM_181791	exon1	c.A436T	p.I146F	ATTGTCATTGTGG	.	161	61	199	0	.	0	0	0	0	0	5
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61769317	61769317	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHD7-141	NM_017780	exon34	c.C7478G	p.P2493R	GCACACCCACAAG	.	224	125	229	0	.	0	0	0	0	0	5
TSNARE1	203062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	143427201	143427201	+	Silent	SNP	C	C	A	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TSNARE1-90	NM_145003	exon3	c.G141T	p.S47S	CTCTGGCGACGGG	.	145	57	147	0	.	12	6	6	0	0	5
SLC24A2	25769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	19786455	19786455	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC24A2-517	NM_001193288	exon1	c.T410C	p.L137P	ACATGCAGAATGA	.	53	9	55	0	.	0	0	0	0	0	4
TCEAL6	158931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101395946	101395946	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TCEAL6-91	NM_001006938	exon3	c.G358A	p.D120N	GGGAATCGTCCGT	.	170	39	307	0	.	94	94	0	0	0	5
IRS4	8471	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	107979158	107979158	+	Silent	SNP	G	G	T	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IRS4-623	NM_003604	exon1	c.C417A	p.P139P	GAGCGGGGGGATC	.	47	17	99	0	.	0	0	0	0	0	3
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	29444479	29444480	+	Splice_Site	DNP	GG	GG	TT	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNRF3-69	NM_001206998	exon7	c.1015+1G>T	.	TCATAGGTAACTG	.	112	40	217	0	.	0	0	0	0	0	4
RAMP3	10268	hgsc.bcm.edu	37	7	45197433	45197433	+	Silent	SNP	G	G	A	rs67477213	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAMP3-90	NM_005856	exon1	c.G6A	p.E2E	CATGGAGACTGGA	.	9	9	6	0	G|0.760;A|0.240	19	9	10	0	0	1
COX1	5742	broad.mit.edu	37	MT	6087	6087	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361624	exon1	c.G184A	p.A62T	GCCCATGCATTTG	.	81	5	11	0	.	21086	20637	435	6	8	1
COX1	5742	broad.mit.edu	37	MT	6931	6931	+	Missense_Mutation	SNP	G	G	A	rs28679680	bycluster	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361624	exon1	c.G1028A	p.G343E	CCCTAGGATTCAT	.	138	6	26	0	.	38703	37210	1483	4	6	1
ND4	0	broad.mit.edu	37	MT	10809	10809	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361381	exon1	c.T50C	p.L17P	CATGACTTTCCAA	.	63	17	11	0	.	18200	12955	5241	3	1	1
ND5	0	broad.mit.edu	37	MT	12871	12871	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361567	exon1	c.G535A	p.D179N	ATCGGCGATATCG	.	75	8	20	0	.	2716	2469	245	0	2	1
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	14071	14071	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361567	exon1	c.A1735G	p.T579A	ACCTCAACCCAAA	.	65	18	16	0	.	2673	2332	340	1	0	2
ND6	0	broad.mit.edu	37	MT	14301	14301	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361681	exon1	c.A373G	p.I125V	AAATTATTCAGCT	.	56	5	11	0	.	3289	2773	514	2	0	1
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	39920766	39920766	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MACF1-165	NM_012090	exon86	c.T14895A	p.H4965Q	TGAGCATCAGGTA	.	115	8	110	0	.	0	0	0	0	0	3
KDM4A	9682	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	44134891	44134891	+	Silent	SNP	G	G	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KDM4A-227	NM_014663	exon10	c.G1284A	p.T428T	GATGACGGAGTGC	.	305	65	210	1	.	0	0	0	0	0	3
GATAD2B	57459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153800736	153800736	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GATAD2B-90	NM_020699	exon2	c.A88T	p.K30X	GTCGCTTTGCCAG	.	51	17	25	0	.	0	0	0	0	0	5
CADM3	57863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159170626	159170626	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CADM3-92	NM_021189	exon10	c.G1213A	p.D405N	GGCTCCGACGATG	.	392	114	343	0	.	0	0	0	0	0	5
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	167095939	167095939	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DUSP27-71	NM_001080426	exon5	c.G1571C	p.G524A	GCGTGGGCTCTGA	.	477	28	397	0	.	0	0	0	0	0	3
RGSL1	353299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182525184	182525184	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RGSL1-226	NM_001137669	exon21	c.G3223C	p.E1075Q	AAAAAAGAGAAGT	.	136	36	145	0	.	0	0	0	0	0	5
SLC26A9	115019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205890762	205890762	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC26A9-92	NM_052934	exon17	c.C1987A	p.H663N	GGGTGTGGAAGGT	.	85	26	62	0	.	0	0	0	0	0	5
TGFB2	7042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	218609421	218609421	+	Silent	SNP	C	C	G	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TGFB2-710	NM_001135599	exon6	c.C948G	p.S316S	GCCCTCCTACAGA	.	291	36	317	0	.	0	0	0	0	0	4
LBR	3930	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	225600179	225600179	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LBR-228	NM_194442	exon8	c.A1061G	p.N354S	AGGTCATTCCGGG	.	289	53	280	1	.	0	0	0	0	0	3
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55582342	55582342	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH15-193	NM_001142763	exon35	c.G5165T	p.R1722I	GTCTCTCTCCTAG	.	43	11	89	0	.	0	0	0	0	0	5
OIT3	170392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	74684374	74684374	+	Missense_Mutation	SNP	G	G	A	rs139078371	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OIT3-70	NM_152635	exon7	c.G1339A	p.V447I	GACGAGGTCCTGA	.	214	40	152	0	G|1.000;A|0.000	0	0	0	0	0	4
C10orf11	83938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	77542776	77542776	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C10orf11-90	NM_032024	exon1	c.A43T	p.K15X	TCAAATAAAAGGT	.	110	17	102	0	.	0	0	0	0	0	4
LZTS2	84445	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	102766836	102766836	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LZTS2-155	NM_032429	exon5	c.G1921A	p.E641K	AGCCTGGAGCTGG	.	247	44	84	1	.	0	0	0	0	0	4
OR52D1	390066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5510738	5510738	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR52D1-68	NM_001005163	exon1	c.G802C	p.G268R	CGCTTTGGTCACC	.	123	27	122	0	.	0	0	0	0	0	5
DNHD1	144132	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6579406	6579406	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNHD1-24	NM_144666	exon25	c.G8881A	p.A2961T	GCCCTGGCAACCT	.	242	45	144	1	.	0	0	0	0	0	4
FANCF	2188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	22646416	22646416	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FANCF-1083	NM_022725	exon1	c.T941C	p.L314P	TGACAGAGGCTTT	.	96	10	93	0	.	0	0	0	0	0	4
OR5M1	390168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56380625	56380625	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR5M1-94	NM_001004740	exon1	c.G354A	p.M118I	CAATGCCATTGAA	.	362	74	350	0	.	0	0	0	0	0	5
PCNXL3	399909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65386303	65386303	+	Silent	SNP	G	G	C	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCNXL3-46	NM_032223	exon6	c.G1470C	p.R490R	CCAGCGGACGCCT	.	34	12	18	0	.	0	0	0	0	0	5
LRRC32	2615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	76370747	76370747	+	Silent	SNP	G	G	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC32-90	NM_005512	exon3	c.C1890A	p.I630I	GAGGATGATGATG	.	108	16	95	0	.	0	0	0	0	0	4
TENM4	26011	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	78369696	78369696	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001098816	exon34	c.G7717T	p.A2573S	TCAAGGCAAACTT	.	114	11	114	0	.	0	0	0	0	0	3
FAT3	120114	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	92624186	92624186	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAT3-73	NM_001008781	exon25	c.A13581T	p.E4527D	TTCCGAAGTAGCC	.	145	40	150	2	.	0	0	0	0	0	3
PDZD3	79849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	119057343	119057343	+	Nonsense_Mutation	SNP	G	G	T	rs141570563	unknown;alternate_allele	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDZD3-153	NM_001168468	exon4	c.G274T	p.G92X	CAGGAAGGAGACA	.	210	57	130	0	G|1.000;A|0.000	0	0	0	0	0	5
FKBP4	2288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2912330	2912330	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FKBP4-226	NM_002014	exon10	c.C1286G	p.A429G	CAGAGGCTTCCTC	.	64	17	36	0	.	0	0	0	0	0	5
C1S	716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7177252	7177252	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C1S-91	NM_201442	exon12	c.T1364A	p.F455Y	TCTTCTTTGACAA	.	100	23	84	0	.	0	0	0	0	0	5
IPO8	10526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	30783824	30783824	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IPO8-227	NM_006390	exon25	c.T3084A	p.F1028L	AAAATTAAATGCG	.	87	21	116	0	.	0	0	0	0	0	5
LETMD1	25875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51451824	51451824	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LETMD1-90	NM_001243689	exon8	c.C964G	p.L322V	TGTTATCTCCGTG	.	118	23	73	0	.	0	0	0	0	0	5
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	57594933	57594933	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRP1-596	NM_002332	exon65	c.T10342A	p.C3448S	AGGGACTGCCGTG	.	148	12	82	0	.	0	0	0	0	0	3
CAND1	55832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	67691276	67691276	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CAND1-516	NM_018448	exon5	c.G581C	p.R194T	GGAAAAGAACCAT	.	102	20	112	0	.	0	0	0	0	0	5
RFC5	5985	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	118454660	118454660	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RFC5-227	NM_007370	exon1	c.G28A	p.E10K	CAGCAGGAGCAGC	.	176	43	103	1	.	0	0	0	0	0	3
CCDC168	643677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	103389045	103389045	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001146197	exon4	c.G14002A	p.E4668K	GCAGTTCCTTTGT	.	24	6	35	0	.	0	0	0	0	0	4
CCDC168	643677	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	13	103397964	103397964	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001146197	exon4	c.C5083A	p.Q1695K	AAAATTGTTTTAA	.	23	7	94	0	.	0	0	0	0	0	3
TRIM9	114088	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	51561207	51561207	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRIM9-227	NM_015163	exon1	c.C451A	p.L151M	CTTCCAGTACGCG	.	136	9	71	0	.	0	0	0	0	0	3
LGALS3	3958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	55611906	55611906	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LGALS3-514	NM_002306	exon6	c.C670T	p.R224W	AATCATCGGGTTA	.	141	39	113	0	.	0	0	0	0	0	5
CEP128	145508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	81259439	81259439	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CEP128-91	NM_152446	exon13	c.C1225G	p.L409V	TCTCCAGTTCACG	.	85	20	78	0	.	0	0	0	0	0	5
UNC79	57578	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	93962775	93962775	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_020818	exon6	c.T200A	p.L67Q	AATTACTGGAATG	.	258	16	312	0	.	0	0	0	0	0	3
OTUB2	78990	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	94510351	94510353	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OTUB2-500	NM_023112	exon4	c.253_255del	p.85_85del	AATGACCTTCTGG	.	251	57	220	0	.	0	0	0	0	0	3
EML1	2009	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	100404174	100404174	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EML1-138	NM_001008707	exon21	c.C2173T	p.Q725X	TGTAAGCAAGTCG	.	173	34	125	1	.	0	0	0	0	0	4
NPAP1	23742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	24921967	24921967	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_018958	exon1	c.C953A	p.P318H	CTCCTCCCAGAGC	.	43	15	39	0	.	0	0	0	0	0	5
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	54542551	54542551	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UNC13C-51	NM_001080534	exon6	c.G3357T	p.W1119C	CCTGTGGGGCATT	.	190	47	261	0	.	0	0	0	0	0	5
ISLR	3671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74467204	74467204	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ISLR-155	NM_201526	exon2	c.A5G	p.Q2R	CCATGCAGGAGCT	.	41	14	39	0	.	0	0	0	0	0	5
PTPN9	5780	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	75809664	75809665	+	Frame_Shift_Del	DEL	AT	AT	-	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPN9-226	NM_002833	exon5	c.463_464del	p.155_155del	CCACACATGTCAT	.	92	29	103	0	.	0	0	0	0	0	3
DNASE1	1773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3705910	3705910	+	Missense_Mutation	SNP	G	G	C	rs143363152	unknown;alternate_allele	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNASE1-90	NM_005223	exon3	c.G208C	p.V70L	ACTGCCGTGGGGA	.	204	50	126	0	G|1.000;T|0.000	0	0	0	0	0	5
ADCY7	113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	50326734	50326734	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADCY7-91	NM_001114	exon4	c.C685T	p.Q229X	CGCCAGCAGGTGG	.	47	14	33	0	.	0	0	0	0	0	5
CDH1	999	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	68867311	68867314	+	Frame_Shift_Del	DEL	CAGA	CAGA	-	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	CAGA	CAGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH1-3377	NM_004360	exon16	c.2558_2561del	p.853_854del	CAGAGTCAGACAA	.	146	24	85	0	.	0	0	0	0	0	3
LSMD1	84316	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7760499	7760499	+	Silent	SNP	G	G	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LSMD1-91	NM_032356	exon1	c.C243T	p.R81R	GTCCTCGCGCTCT	.	95	19	62	1	.	0	0	0	0	0	3
MYH2	4620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10428659	10428659	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYH2-194	NM_017534	exon33	c.T4544A	p.I1515N	TCAGAAATCTCCT	.	60	20	78	0	.	0	0	0	0	0	5
UBB	7314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	16285604	16285604	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBB-47	NM_018955	exon2	c.A383G	p.D128G	TGGAAGATGGCCG	.	437	83	214	0	.	0	0	0	0	0	4
NEK8	284086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27064883	27064883	+	Silent	SNP	G	G	A	rs146798411	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NEK8-335	NM_178170	exon7	c.G936A	p.S312S	ACTGTCGTCAGTG	.	237	35	70	0	G|1.000;A|0.000	0	0	0	0	0	4
FKBP10	60681	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39974745	39974745	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FKBP10-227	NM_021939	exon4	c.C693G	p.I231M	TATCATCCCTCCA	.	142	45	149	0	.	0	0	0	0	0	4
BECN1	8678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40963676	40963676	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BECN1-228	NM_003766	exon11	c.A1181G	p.Y394C	GACCTGTAGGGAA	.	97	27	85	0	.	0	0	0	0	0	5
MARCH10	162333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	60779069	60779069	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MARCH10-90	NM_001100875	exon11	c.G2422A	p.V808I	GCTAGACGACCTG	.	109	16	59	0	.	0	0	0	0	0	4
RAB37	326624	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	72740494	72740494	+	Silent	SNP	C	C	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAB37-230	NM_001163989	exon6	c.C429T	p.I143I	GGTGATCATGCTG	.	124	10	62	0	.	0	0	0	0	0	3
FDXR	2232	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72862635	72862635	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FDXR-226	NM_001258012	exon4	c.G455C	p.G152A	ACGTTGCCCCAGA	.	401	102	184	1	.	0	0	0	0	0	4
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	76424635	76424635	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH17-142	NM_173628	exon77	c.12559delG	p.A4187fs	TGCCTGCCCCCGA	.	154	43	88	0	.	0	0	0	0	0	3
ANKRD30B	374860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	14763720	14763720	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD30B-24	NM_001145029	exon7	c.C856A	p.P286T	GCTGCACCCTTGG	.	55	11	46	0	.	0	0	0	0	0	4
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	31323513	31323513	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASXL3-49	NM_030632	exon12	c.A3701T	p.N1234I	ATAAAAATTCTGT	.	37	15	51	0	.	0	0	0	0	0	5
SETBP1	26040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	42531586	42531586	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SETBP1-155	NM_015559	exon4	c.G2281A	p.V761M	CCAGCCGTGCCTT	.	152	27	158	0	.	0	0	0	0	0	5
SERPINB10	5273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	61587036	61587036	+	Silent	SNP	C	C	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SERPINB10-227	NM_005024	exon4	c.C387T	p.D129D	AGAAGACATGAAA	.	48	7	87	0	.	0	0	0	0	0	4
KDM4B	23030	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	5041154	5041154	+	Silent	SNP	T	T	C	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KDM4B-226	NM_015015	exon5	c.T324C	p.C108C	GTACTGTACCCCG	.	140	12	104	0	.	0	0	0	0	0	3
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10600462	10600462	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KEAP1-637	NM_012289	exon4	c.G1393A	p.V465M	CAGCCACGCCCAC	.	264	27	60	0	.	0	0	0	0	0	4
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11097013	11097013	+	Silent	SNP	C	C	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMARCA4-1523	NM_003072	exon4	c.C504T	p.G168G	CCGGGGCCCAACC	.	136	17	50	0	.	0	0	0	0	0	4
GPATCH1	55094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	33579080	33579080	+	Silent	SNP	T	T	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPATCH1-91	NM_018025	exon2	c.T114A	p.T38T	TCAGACTGTCAGA	.	45	11	31	0	.	0	0	0	0	0	5
CYP2B6	1555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	41509976	41509976	+	Missense_Mutation	SNP	T	T	C	rs138912615	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CYP2B6-92	NM_000767	exon2	c.T242C	p.V81A	GTGGAGTAGAGGC	.	355	46	180	0	T|1.000;C|0.000	0	0	0	0	0	4
CEACAM6	4680	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	42270108	42270108	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CEACAM6-91	NM_002483	exon5	c.T976C	p.S326P	GTCCTCTCAGCTG	.	176	16	92	0	.	0	0	0	0	0	3
DMRTC2	63946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	42354402	42354402	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DMRTC2-90	NM_001040283	exon7	c.C778G	p.P260A	CTCCAGCCCTGTG	.	127	20	92	0	.	0	0	0	0	0	4
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42795782	42795782	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CIC-591	NM_015125	exon11	c.T2771A	p.V924E	TCCTAGTGCCTCT	.	145	28	43	0	.	0	0	0	0	0	5
SCAF1	58506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50157674	50157674	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCAF1-68	NM_021228	exon8	c.C3385G	p.Q1129E	CTGATCCAGGCCA	.	196	37	97	0	.	0	0	0	0	0	5
LILRA4	23547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54849247	54849247	+	Silent	SNP	C	C	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LILRA4-91	NM_012276	exon4	c.G615A	p.V205V	CGACCACACGTAT	.	102	16	65	0	.	0	0	0	0	0	4
LILRA2	11027	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	55098715	55098715	+	Missense_Mutation	SNP	C	C	T	rs149580797	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LILRA2-91	NM_001130917	exon8	c.C1354T	p.R452C	CTCATCCGCATGG	.	266	36	142	0	C|0.996;T|0.004	0	0	0	0	0	3
PEG3	5178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57335765	57335765	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PEG3-164	NM_001146184	exon3	c.G259C	p.E87Q	AGAGCTCGATGAT	.	218	60	225	0	.	0	0	0	0	0	5
PROKR1	10887	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	68873425	68873425	+	Missense_Mutation	SNP	A	A	G	rs147256235	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PROKR1-523	NM_138964	exon1	c.A472G	p.I158V	CTGGCCATCGCCA	.	150	32	100	0	A|1.000;G|0.000	0	0	0	0	0	3
HK2	3099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	75115104	75115104	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HK2-252	NM_000189	exon16	c.G2294T	p.G765V	AGCGTGGACTACT	.	275	39	188	0	.	0	0	0	0	0	5
AFF3	3899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	100167958	100167958	+	Missense_Mutation	SNP	C	C	T	rs150108936	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AFF3-230	NM_001025108	exon24	c.G3734A	p.R1245Q	CTGTTCCGCAGCC	.	90	26	49	0	C|1.000;T|0.000	0	0	0	0	0	4
DNPEP	23549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220250725	220250725	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNPEP-90	NM_012100	exon6	c.C555G	p.I185M	CTCGTTGATATTT	.	260	57	130	0	.	0	0	0	0	0	5
TOP1	7150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	39746844	39746844	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TOP1-1148	NM_003286	exon18	c.A1858T	p.N620Y	TCTTATAACCGTG	.	351	47	230	0	.	0	0	0	0	0	5
RBPJL	11317	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	43945172	43945172	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBPJL-227	NM_014276	exon11	c.C1232T	p.A411V	TCCACGCGGGGCT	.	397	25	193	0	.	0	0	0	0	0	3
ZSWIM3	140831	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	44505469	44505472	+	Frame_Shift_Del	DEL	TATT	TATT	-	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	TATT	TATT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZSWIM3-92	NM_080752	exon2	c.272_275del	p.91_92del	ATAGACTATTTAT	.	194	40	117	0	.	0	0	0	0	0	3
PI4KA	5297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21150535	21150535	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PI4KA-454	NM_058004	exon18	c.G2176C	p.V726L	CATCCACCAGGTG	.	229	64	192	0	.	0	0	0	0	0	5
PACSIN2	11252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	43289603	43289603	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PACSIN2-68	NM_007229	exon3	c.G77A	p.R26Q	ACAGTCCGCTTGT	.	191	32	132	0	.	0	0	0	0	0	5
PRRT3	285368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9988097	9988097	+	Silent	SNP	G	G	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRRT3-90	NM_207351	exon4	c.C2760T	p.R920R	CCCGTGGCGCCAG	.	258	67	126	0	.	0	0	0	0	0	5
CCDC13	152206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42799655	42799655	+	Silent	SNP	G	G	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC13-91	NM_144719	exon2	c.C183T	p.H61H	CCCTGCGTGGAGA	.	129	29	76	0	.	0	0	0	0	0	5
SACM1L	22908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45776839	45776839	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SACM1L-91	NM_014016	exon14	c.C1213T	p.R405C	TTAGCTCGTCGTT	.	119	35	109	0	.	0	0	0	0	0	5
CACNA1D	776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	53844133	53844133	+	Silent	SNP	G	G	C	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNA1D-100	NM_000720	exon48	c.G6060C	p.L2020L	CCCCCTGATCCAA	.	177	38	128	0	.	0	0	0	0	0	5
GBE1	2632	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	81627176	81627176	+	Silent	SNP	C	C	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GBE1-25	NM_000158	exon12	c.G1518T	p.L506L	AGGAGTCAGGACA	.	84	17	95	1	.	0	0	0	0	0	3
PTPLB	201562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	123247281	123247281	+	Silent	SNP	C	C	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPLB-226	NM_198402	exon4	c.G333A	p.V111V	TGACATCACCTGG	.	43	6	83	0	.	0	0	0	0	0	4
ASTE1	28990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	130737507	130737507	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASTE1-90	NM_014065	exon4	c.G1356T	p.Q452H	AATGGTCTGTTTC	.	117	12	160	0	.	0	0	0	0	0	4
LRRC31	79782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	169558017	169558017	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC31-93	NM_024727	exon9	c.C1412T	p.P471L	AACATGGTCCACC	.	217	24	137	0	.	0	0	0	0	0	4
HTR3D	200909	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183756600	183756600	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HTR3D-90	NM_001163646	exon8	c.G1202A	p.G401D	CAGGGGGCTCAGA	.	488	75	280	1	.	0	0	0	0	0	4
JAKMIP1	152789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	6114570	6114570	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	JAKMIP1-292	NM_001099433	exon2	c.A8G	p.K3R	CCTTTCTTCGACA	.	85	27	60	0	.	0	0	0	0	0	5
SEL1L3	23231	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	25760664	25760664	+	Silent	SNP	G	G	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_015187	exon21	c.C2982T	p.I994I	TTCCTCGATTAGC	.	79	37	78	1	.	0	0	0	0	0	4
ALPK1	80216	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	113352657	113352657	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALPK1-337	NM_001102406	exon11	c.G1954A	p.E652K	CTTCAGGAACCCA	.	116	17	124	1	.	0	0	0	0	0	3
INTU	27152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	128628123	128628123	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	INTU-91	NM_015693	exon12	c.A2270T	p.K757M	TGCTTAAGGTGTG	.	127	17	151	0	.	0	0	0	0	0	4
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	134072249	134072249	+	Silent	SNP	T	T	C	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH10-92	NM_032961	exon1	c.T954C	p.Y318Y	GGACTATGAAGAG	.	156	40	123	0	.	0	0	0	0	0	5
TTC29	83894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	147830303	147830303	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTC29-90	NM_031956	exon5	c.A275C	p.D92A	AGGGCATCCCACC	.	49	10	57	0	.	0	0	0	0	0	4
EGFLAM	133584	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	38418285	38418285	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EGFLAM-187	NM_001205301	exon12	c.C1612T	p.L538F	CAGTCGCTCGCTG	.	205	35	152	2	.	0	0	0	0	0	3
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	90055402	90055402	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR98-103	NM_032119	exon58	c.G12117C	p.K4039N	AGAAAAGACTGTA	.	108	8	90	0	.	0	0	0	0	0	3
ZNF474	133923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	121487769	121487769	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF474-90	NM_207317	exon2	c.C84G	p.N28K	TATCAACCAAGCT	.	92	20	94	0	.	0	0	0	0	0	5
CHSY3	337876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	129241282	129241282	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHSY3-25	NM_175856	exon1	c.T760C	p.Y254H	GACAAGTATGAGT	.	276	39	148	0	.	0	0	0	0	0	5
PCDHA12	56137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140255507	140255507	+	Silent	SNP	T	T	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_018903	exon1	c.T450A	p.S150S	GGACTCTCATTTT	.	197	38	148	0	.	0	0	0	0	0	5
PCDHB13	56123	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140594583	140594583	+	Silent	SNP	T	T	C	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB13-93	NM_018933	exon1	c.T888C	p.N296N	GATCAATCCCTTG	.	194	48	228	1	.	0	0	0	0	0	3
PCDHGA8	9708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140774156	140774156	+	Silent	SNP	G	G	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_014004	exon1	c.G1776A	p.V592V	GGTGGTGGCGGTG	.	353	64	84	0	.	0	0	0	0	0	4
PCDHGB7	56099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140799544	140799544	+	Silent	SNP	G	G	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHGB7-29	NM_018927	exon1	c.G2118A	p.A706A	CCTCGCGGTGATT	.	202	32	142	0	.	0	0	0	0	0	5
KCTD16	57528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	143853595	143853595	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCTD16-137	NM_020768	exon4	c.T1205C	p.F402S	AGGATTTCCTAAA	.	118	8	133	0	.	0	0	0	0	0	3
FBXO38	81545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	147820759	147820759	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXO38-231	NM_030793	exon21	c.C3122G	p.P1041R	CAGAGCCCAACAG	.	133	18	131	0	.	0	0	0	0	0	4
UNC5A	90249	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176305481	176305481	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UNC5A-91	NM_133369	exon13	c.C2025G	p.I675M	GGAGATCCCCTTT	.	377	57	201	0	.	0	0	0	0	0	4
DBN1	1627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176894041	176894041	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DBN1-587	NM_080881	exon8	c.A584C	p.E195A	TCCTCCTCCTTCC	.	95	8	34	0	.	0	0	0	0	0	4
GPANK1	7918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31630170	31630170	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPANK1-91	NM_001199238	exon4	c.G944A	p.R315Q	ACAGCTCGGGTAT	.	210	32	92	0	.	0	0	0	0	0	5
STK19	8859	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	31940267	31940267	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STK19-336	NM_032454	exon2	c.G409C	p.D137H	GAGTCGGATCCTC	.	38	8	44	0	.	0	0	0	0	0	3
ITPR3	3710	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33651116	33651116	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITPR3-1085	NM_002224	exon35	c.C4730G	p.P1577R	CCTTCCCCCGCGT	.	226	64	132	1	.	0	0	0	0	0	4
CENPQ	55166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49456158	49456158	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CENPQ-92	NM_018132	exon7	c.G571T	p.E191X	GAGGTGGAAGAAG	.	176	31	228	0	.	0	0	0	0	0	5
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56391195	56391195	+	Silent	SNP	C	C	A	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DST-523	NM_015548	exon50	c.G10224T	p.V3408V	CTCCTCCACCTTC	.	149	38	162	0	.	0	0	0	0	0	5
ANLN	54443	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	36436004	36436006	+	In_Frame_Del	DEL	CAG	CAG	-	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	CAG	CAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANLN-517	NM_018685	exon2	c.148_150del	p.50_50del	AGTAACCAGCAGC	.	103	25	142	0	.	0	0	0	0	0	3
WBSCR22	114049	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	73101340	73101340	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WBSCR22-90	NM_001202560	exon5	c.G277C	p.D93H	GCTGTGGACCGAG	.	80	4	61	0	.	0	0	0	0	0	3
GPR85	54329	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	112724050	112724050	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR85-91	NM_001146265	exon3	c.T727C	p.W243R	CTAGCCAATTGGC	.	102	7	99	0	.	0	0	0	0	0	3
KCND2	3751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	119915231	119915231	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCND2-517	NM_012281	exon1	c.C545T	p.T182M	CCAGCACGATGGC	.	122	27	141	0	.	0	0	0	0	0	5
TPD52L3	89882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	6328653	6328653	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TPD52L3-68	NM_033516	exon1	c.G58C	p.E20Q	ACTTCTGAACTGG	.	85	15	83	0	.	0	0	0	0	0	4
VPS13A	23230	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	79933239	79933241	+	In_Frame_Del	DEL	CTA	CTA	-	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	CTA	CTA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VPS13A-161	NM_001018038	exon41	c.5045_5047del	p.1682_1683del	CTTCTTCTACTGC	.	126	21	149	0	.	0	0	0	0	0	3
RMI1	80010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	86616405	86616405	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RMI1-90	NM_024945	exon3	c.G504C	p.L168F	AATTTTGATTTAT	.	52	7	57	0	.	0	0	0	0	0	4
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113169657	113169657	+	Silent	SNP	A	A	G	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SVEP1-75	NM_153366	exon38	c.T8223C	p.Y2741Y	ACAGCTATACTGC	.	177	29	118	0	.	0	0	0	0	0	5
COL5A1	1289	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137704528	137704528	+	Silent	SNP	A	A	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL5A1-524	NM_000093	exon48	c.A3822T	p.G1274G	AGGTGGAATAGGA	.	131	33	91	1	.	0	0	0	0	0	4
MAGEE2	139599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	75003782	75003782	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAGEE2-132	NM_138703	exon1	c.A1105C	p.I369L	CCTCAATCAGAGA	.	53	11	79	0	.	0	0	0	0	0	4
VSIG1	340547	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107320488	107320488	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VSIG1-132	NM_001170553	exon8	c.G1149C	p.E383D	CATCGAGCTGGAG	.	112	36	176	0	.	0	0	0	0	0	4
DCAF12L1	139170	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	125685622	125685622	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DCAF12L1-132	NM_178470	exon1	c.G970A	p.G324S	GGGAGCCCACGGC	.	268	18	285	0	.	0	0	0	0	0	3
DIP2B	57609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	51072495	51072495	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DIP2B-95	NM_173602	exon8	c.A950G	p.E317G	AGCCGGAGGGACG	.	240	25	136	0	.	12	10	2	0	0	4
WSCD2	9671	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	108589790	108589790	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WSCD2-136	NM_014653	exon2	c.G181T	p.G61C	GCTGAGGGTGCTG	.	339	74	173	1	.	1	1	0	0	0	4
ANKRD34C	390616	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	79587017	79587017	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001146341	exon2	c.C1391T	p.P464L	TCCTGCCGCCTTT	.	84	6	73	0	.	0	0	0	0	0	3
KRT12	3859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39021191	39021191	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRT12-91	NM_000223	exon3	c.G674A	p.R225H	CCCTGGCGCAGGG	.	131	56	94	0	.	0	0	0	0	0	5
NCOA1	8648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	24951320	24951320	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NCOA1-228	NM_147223	exon14	c.C2861T	p.A954V	ACAGAGCTCTGGG	.	64	27	64	0	.	24	13	11	0	0	5
ST6GAL2	84620	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	107423245	107423245	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ST6GAL2-191	NM_032528	exon6	c.G1479T	p.Q493H	CAGGCGCTGCACC	.	159	32	120	1	.	0	0	0	0	0	4
SMTN	6525	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	31495743	31495743	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMTN-154	NM_001207017	exon20	c.C2719T	p.Q907X	GACATCCAGAACT	.	150	8	118	0	.	1	1	0	0	0	3
TMPRSS6	164656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37462261	37462261	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMPRSS6-292	NM_153609	exon18	c.G2295A	p.P765P	CACCAGCGGACCA	.	185	47	88	0	.	0	0	0	0	0	5
KIAA0368	23392	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	114195628	114195628	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA0368-68	NM_001080398	exon9	c.A1267G	p.I423V	CTTCTATGAATTT	.	152	8	120	0	.	14	14	0	0	0	3
ATN1	1822	hgsc.bcm.edu;ucsc.edu	37	12	7045900	7045900	+	Silent	SNP	G	G	A	rs142238167	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATN1-139	NM_001007026	exon5	c.G1470A	p.Q490Q	GCAGCAGCAGCAG	.	209	18	118	0	G|0.985;A|0.015	252	247	5	0	0	2
SEZ6L2	26470	hgsc.bcm.edu;ucsc.edu	37	16	29884982	29884982	+	Missense_Mutation	SNP	C	C	T	rs146085461	unknown	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEZ6L2-92	NM_001243332	exon13	c.G2173A	p.V725I	AGCCAACGGGGAA	.	117	53	18	0	C|1.000;T|0.000	38	9	29	0	0	2
PCDHB3	56132	ucsc.edu	37	5	140482342	140482342	+	Silent	SNP	T	T	C	rs17844403	bycluster;byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB3-92	NM_018937	exon1	c.T2109C	p.F703F	CCTCTTTTCGGTG	.	67	9	11	0	T|0.997;C|0.003	34	10	24	0	0	1
COX3	5742	broad.mit.edu;bcgsc.ca	37	MT	9623	9623	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000362079	exon1	c.A417G	p.A139A	ACTCGCATCAGGA	.	137	86	14	0	.	176299	71183	105001	63	52	2
STIL	6491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47746485	47746485	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STIL-659	NM_003035	exon12	c.G1645A	p.E549K	ACTCTTCGTTTTG	.	44	14	103	0	.	1	1	0	0	0	5
ADD3	120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	111879036	111879036	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADD3-157	NM_001121	exon7	c.A785G	p.Y262C	TTGCCTATTATGA	.	93	34	157	0	.	2	1	1	0	0	5
CAPRIN1	4076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	34104425	34104425	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CAPRIN1-91	NM_203364	exon8	c.879+1G>T	.	ACAGAGGTATGAT	.	51	21	151	0	.	1	0	1	0	0	5
OR4C3	256144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	48347234	48347234	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4C3-69	NM_001004702	exon1	c.T742C	p.Y248H	ATCCTGTACTCCT	.	222	13	357	0	.	0	0	0	0	0	3
PDE3A	5139	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	20766633	20766633	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDE3A-94	NM_000921	exon3	c.A1268T	p.K423M	TTCCAAAGGTAGG	.	70	33	88	0	.	0	0	0	0	0	4
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	54307147	54307147	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UNC13C-51	NM_001080534	exon1	c.C2047G	p.L683V	AACAGTCTTTTTG	.	83	10	128	0	.	0	0	0	0	0	4
CATSPERD	257062	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	5744509	5744509	+	Silent	SNP	G	G	T	novel	unknown	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_152784	exon8	c.G645T	p.V215V	TGTAGTGAATCAA	.	82	5	103	0	.	0	0	0	0	0	3
ZNF546	339327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40520583	40520583	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF546-155	NM_178544	exon7	c.A1406G	p.Y469C	AACCCTATGAATG	.	57	25	54	0	.	25	24	0	0	1	5
SSC5D	284297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	56012011	56012011	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001195267	exon11	c.G2457A	p.R819R	GGTCCGGCCTCGA	.	176	11	178	0	.	1	1	0	0	0	3
ZFP28	140612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57051018	57051018	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFP28-91	NM_020828	exon2	c.T233C	p.L78P	CTGCTCTTCCCCA	.	129	66	88	0	.	2	0	2	0	0	5
ITGAV	3685	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	187521095	187521095	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITGAV-653	NM_002210	exon17	c.G1686A	p.L562L	GGGACTGATGCAG	.	80	32	167	1	.	1	0	1	0	0	4
FARP2	9855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242396172	242396172	+	Silent	SNP	G	G	C	novel	unknown	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FARP2-93	NM_014808	exon14	c.G1422C	p.T474T	TTCCACGAAGAGT	.	197	181	238	1	.	0	0	0	0	0	5
TGM6	343641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2384245	2384245	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TGM6-94	NM_198994	exon9	c.C1112T	p.P371L	GCGGCCCAGCCTC	.	136	32	100	0	.	0	0	0	0	0	5
TMEM115	11070	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	50392898	50392900	+	In_Frame_Del	DEL	TCA	TCA	-	novel	unknown	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	TCA	TCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM115-278	NM_007024	exon2	c.930_932del	p.310_311del	TCCTCTTCATCAT	.	100	28	171	0	.	0	0	0	0	0	3
PTPN13	5783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87643581	87643581	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPN13-230	NM_006264	exon10	c.A1602C	p.K534N	AAGAAAACTGAGG	.	341	147	287	0	.	0	0	0	0	0	5
CNOT6	57472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	179994980	179994980	+	Missense_Mutation	SNP	G	G	A	rs143354534	unknown;alternate_allele	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNOT6-90	NM_015455	exon9	c.G1004A	p.R335Q	AACTTCGGAAGGA	.	120	18	105	0	G|1.000;T|0.000	5	5	0	0	0	4
C6orf222	389384	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	36298263	36298263	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C6orf222-93	NM_001010903	exon2	c.C205A	p.H69N	TGCAGTGAGCCTC	.	68	18	70	0	.	0	0	0	0	0	5
COL21A1	81578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	55990909	55990909	+	Silent	SNP	G	G	T	novel	unknown	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL21A1-24	NM_030820	exon13	c.C1581A	p.G527G	TGGCATGCCATGA	.	135	28	185	0	.	0	0	0	0	0	5
ANKIB1	54467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92027761	92027761	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKIB1-432	NM_019004	exon20	c.T2768G	p.M923R	GCCTCATGAGACT	.	189	95	163	0	.	7	6	1	0	0	5
THAP5	168451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	108205172	108205172	+	Silent	SNP	T	T	C	rs142576735	unknown	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	THAP5-68	NM_001130475	exon3	c.A651G	p.Q217Q	CAAAGATTGATGA	.	88	15	72	0	T|1.000;C|0.000	5	5	0	0	0	4
RIPK2	8767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	90777603	90777603	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RIPK2-523	NM_003821	exon3	c.G362C	p.R121T	CATTGAGATTTCG	.	100	54	62	0	.	1	0	1	0	0	5
INVS	27130	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	103008983	103008983	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	INVS-92	NM_183245	exon8	c.G992T	p.G331V	CAGCTGGCAAAGG	.	250	27	405	1	.	0	0	0	0	0	3
FOXO4	4303	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	70321291	70321294	+	Frame_Shift_Del	DEL	CCTC	CCTC	-	novel	unknown	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	CCTC	CCTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FOXO4-986	NM_005938	exon2	c.1211_1214del	p.404_405del	TTCCTTCCTCCAG	.	74	33	70	0	.	0	0	0	0	0	3
CYLC1	1538	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	83128178	83128178	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CYLC1-112	NM_021118	exon4	c.A462G	p.R154R	TAAAAGACAAAAT	.	81	79	82	1	.	0	0	0	0	0	3
NUP188	23511	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	131719265	131719266	+	Frame_Shift_Ins	INS	-	-	GT	novel	unknown	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NUP188-207	NM_015354	exon5	c.281_282insGT	p.Q94fs	TACTCCAGTGTTA	.	118	48	206	0	.	0	0	0	0	0	3
PRAMEF11	440560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	12884876	12884876	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001146344	exon4	c.T1235A	p.L412X	CAGAACAAGATCC	.	769	109	714	1	.	0	0	0	0	0	4
FUCA1	2517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	24186340	24186340	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FUCA1-153	NM_000147	exon4	c.A716C	p.Y239S	TTCCAGTAAGTAT	.	87	14	86	0	.	65	54	11	0	0	4
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152281825	152281825	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FLG-106	NM_002016	exon3	c.C5537A	p.T1846N	GACGTGGTGTGGC	.	259	88	219	0	.	3	2	1	0	0	5
RRNAD1	51093	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	156703253	156703253	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RRNAD1-90	NM_015997	exon5	c.C577T	p.Q193X	AGAGCCCAGCGCC	.	58	6	52	0	.	26	25	1	0	0	3
HEATR5A	25938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	31765136	31765136	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HEATR5A-23	NM_015473	exon34	c.T5598C	p.T1866T	CTCAAGAGTAGCT	.	82	24	53	0	.	17	14	3	0	0	5
TTC39C	125488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21703901	21703901	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTC39C-91	NM_001135993	exon9	c.G1290A	p.V430V	CTCGGTGAAAAAG	.	86	17	110	0	.	0	0	0	0	0	5
TICAM1	148022	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4818321	4818321	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TICAM1-153	NM_182919	exon2	c.C69T	p.L23L	ATACAAGAGCTTG	.	47	7	51	0	.	12	10	2	0	0	3
ARHGEF18	23370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7506565	7506565	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGEF18-228	NM_001130955	exon2	c.C569A	p.A190D	ATGAAGCCGATTC	.	57	9	55	0	.	20	17	3	0	0	4
IRF3	3661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50163981	50163981	+	Missense_Mutation	SNP	C	C	T	rs148672096	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IRF3-92	NM_001197122	exon7	c.G1103A	p.R368H	CCATCACGAGCCT	.	57	26	55	0	C|0.995;T|0.005	1	1	0	0	0	5
LHFPL4	375323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9543923	9543923	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LHFPL4-71	NM_198560	exon4	c.G716T	p.C239F	ACGGGGCAGGGAA	.	173	70	182	0	.	0	0	0	0	0	5
PCDHA2	56146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140174742	140174742	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHA2-94	NM_031495	exon1	c.C193T	p.R65W	CTGTTCCGGGTGG	.	67	5	56	0	.	1	1	0	0	0	3
FAM154A	158297	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	18928282	18928282	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM154A-69	NM_153707	exon4	c.G1193A	p.G398E	ACATTTCCTCGAG	.	111	20	118	1	.	0	0	0	0	0	3
PNPLA7	375775	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	140414395	140414395	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PNPLA7-91	NM_001098537	exon11	c.C1058A	p.P353Q	AGCCGCGGTGGCT	.	71	5	69	0	.	1	1	0	0	0	3
TFDP3	51270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	132351801	132351801	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TFDP3-131	NM_016521	exon1	c.C487T	p.R163C	AGGTGCGCCGTTT	.	116	18	94	0	.	0	0	0	0	0	4
KCNN3	3782	broad.mit.edu	37	1	154842333	154842333	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNN3-91	NM_001204087	exon1	c.G108A	p.Q36Q	CTGTTGCTGCTGC	.	70	4	47	2	.	150	138	11	0	1	1
COX1	5742	broad.mit.edu	37	MT	6576	6576	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361624	exon1	c.G673A	p.G225R	GCCGGAGGAGGAG	.	24	14	11	0	.	55132	30050	25058	7	16	1
DMAP1	55929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44685739	44685739	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DMAP1-226	NM_001034024	exon10	c.C1102T	p.R368X	GAGCTGCGAAGCG	.	83	27	117	0	.	37	29	8	0	0	5
PTGFR	5737	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	78958569	78958569	+	Silent	SNP	C	C	A	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTGFR-527	NM_000959	exon2	c.C141A	p.A47A	CCTTGCCATCGCC	.	84	60	139	0	.	0	0	0	0	0	4
KIRREL	55243	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158058193	158058193	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIRREL-91	NM_018240	exon8	c.G993T	p.W331C	TGTCTGGGTTGGG	.	207	42	192	1	.	3	3	0	0	0	4
ITLN1	55600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160850441	160850441	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITLN1-96	NM_017625	exon6	c.C622T	p.P208S	CCACAGGGATCAC	.	168	80	131	0	.	0	0	0	0	0	5
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	176564267	176564267	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAPPA2-548	NM_020318	exon3	c.G1527C	p.L509F	GGAATTGATCTCC	.	116	47	107	0	.	0	0	0	0	0	5
SOX13	9580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	204093978	204093978	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SOX13-514	NM_005686	exon13	c.G1585A	p.V529M	AGCTACGTGATCC	.	210	90	210	0	.	0	0	0	0	0	5
KCNH1	3756	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	210971042	210971042	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNH1-94	NM_172362	exon9	c.G1723C	p.V575L	TGAACACCTTGCG	.	246	23	207	0	.	0	0	0	0	0	3
OR2M2	391194	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248343508	248343508	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2M2-72	NM_001004688	exon1	c.T221A	p.I74N	TGCTCATCTGCAC	.	256	46	264	1	.	0	0	0	0	0	4
ALOX5	240	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	45878015	45878015	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALOX5-228	NM_000698	exon2	c.G235T	p.D79Y	CTGAATGACGACT	.	217	94	222	2	.	6	6	0	0	0	4
CCDC147	159686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106214282	106214282	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC147-71	NM_001008723	exon18	c.G2613A	p.T871T	AATGACGTTCTAA	.	158	27	159	0	.	0	0	0	0	0	5
MUC6	4588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1031972	1031972	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUC6-23	NM_005961	exon3	c.C197T	p.T66M	TTGCACGTCCCCG	.	125	86	185	0	.	0	0	0	0	0	5
ABCC8	6833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	17485036	17485036	+	Silent	SNP	C	C	G	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCC8-91	NM_000352	exon4	c.G528C	p.V176V	GAGGATCACCAGC	.	101	21	142	0	.	0	0	0	0	0	5
OR5J2	282775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55944120	55944120	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR5J2-115	NM_001005492	exon1	c.C27T	p.V9V	AGTTGTCACTGAG	.	78	23	146	0	.	0	0	0	0	0	5
OR10G9	219870	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	123893785	123893785	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR10G9-92	NM_001001953	exon1	c.C66T	p.D22D	GCTGGACGCCCCA	.	231	12	370	0	.	0	0	0	0	0	3
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	40715839	40715839	+	Nonsense_Mutation	SNP	C	C	T	rs11564176	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRK2-533	NM_198578	exon36	c.C5173T	p.R1725X	TTAGAACGAGCAC	.	46	6	30	0	C|0.989;T|0.011	0	0	0	0	0	3
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49421629	49421629	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLL2-612	NM_003482	exon47	c.A14600G	p.Y4867C	AGGGTATAGCCAG	.	153	36	150	0	.	4	4	0	0	0	5
OTOGL	283310	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	80749522	80749522	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_173591	exon46	c.C5573G	p.T1858S	CATGCACTGATAG	.	117	8	79	0	.	0	0	0	0	0	3
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124413963	124413963	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH10-95	NM_207437	exon70	c.C12094T	p.Q4032X	GTGGTGCAGGAGA	.	239	101	188	0	.	0	0	0	0	0	5
AJUBA	84962	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	23450590	23450590	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_032876	exon1	c.G886A	p.G296R	GGGCTCCGGCTTC	.	96	41	54	0	.	1	0	1	0	0	4
MYEF2	50804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48460977	48460977	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYEF2-523	NM_016132	exon2	c.G221A	p.S74N	TTCTTACTTCCTG	.	26	18	73	0	.	1	0	1	0	0	5
HS3ST2	9956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	22826384	22826384	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HS3ST2-516	NM_006043	exon1	c.C453G	p.D151E	CTTTGACAGGAAC	.	150	51	125	0	.	2	2	0	0	0	5
SNX20	124460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	50707759	50707759	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SNX20-23	NM_182854	exon4	c.C509T	p.A170V	CGGATGGCGTAGA	.	30	6	18	0	.	0	0	0	0	0	4
SLC7A6	9057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	68330375	68330375	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC7A6-90	NM_003983	exon9	c.T1228G	p.Y410D	CAGCTCTACCTCC	.	94	33	60	0	.	7	5	2	0	0	5
AOC3	8639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41008411	41008411	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AOC3-516	NM_003734	exon4	c.C2136T	p.D712D	CTTTGACGAAGAC	.	108	80	203	0	.	14	14	0	0	0	5
EPB41L3	23136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	5397119	5397119	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPB41L3-95	NM_012307	exon18	c.C2779A	p.Q927K	CCTCTTGTCGCTC	.	29	21	53	0	.	22	6	16	0	0	5
PTPRM	5797	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	8069961	8069961	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPRM-228	NM_001105244	exon8	c.C1410T	p.S470S	GGAAAGCCAAGAA	.	91	7	146	0	.	19	18	1	0	0	3
DSG1	1828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	28934939	28934939	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DSG1-519	NM_001942	exon15	c.T2780A	p.I927N	GAGTAATCCAACC	.	161	102	344	1	.	0	0	0	0	0	5
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	31319098	31319098	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASXL3-49	NM_030632	exon11	c.C1730A	p.S577Y	GGTCATCTTCTCT	.	39	12	60	0	.	0	0	0	0	0	5
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	9047465	9047465	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUC16-566	NM_024690	exon5	c.C34166T	p.S11389L	AAATCTGAAGTGG	.	176	15	181	0	.	0	0	0	0	0	3
ZNF585B	92285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37676152	37676152	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF585B-91	NM_152279	exon5	c.G2287T	p.V763F	GATGAACACTGAA	.	160	61	156	0	.	7	4	3	0	0	5
ZFP36	7538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39899249	39899249	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFP36-227	NM_003407	exon2	c.C909T	p.P303P	CTCTCCCGTCTTC	.	48	21	59	0	.	110	110	0	0	0	5
IZUMO2	126123	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50666417	50666417	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IZUMO2-90	NM_152358	exon1	c.G35T	p.G12V	CCCAAGCCCGAGA	.	117	10	46	0	.	0	0	0	0	0	3
GPR113	165082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	26540927	26540927	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR113-94	NM_001145168	exon2	c.G243C	p.Q81H	CATTGTCTGGCCC	.	64	36	97	0	.	0	0	0	0	0	5
LRRTM4	80059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	77745739	77745739	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRTM4-94	NM_024993	exon3	c.A1256T	p.H419L	GAAACATGCTCAT	.	36	8	77	0	.	0	0	0	0	0	4
GAL3ST2	64090	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	242742905	242742905	+	Missense_Mutation	SNP	C	C	T	rs143165919	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GAL3ST2-90	NM_022134	exon4	c.C521T	p.P174L	CCTCGCCGCGGAC	.	257	72	308	0	C|1.000;T|0.000	0	0	0	0	0	4
FAM209B	388799	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	55108589	55108589	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001013646	exon1	c.G192T	p.L64F	GCTTTTGTTTGCT	.	264	46	251	2	.	0	0	0	0	0	4
RFPL2	10739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32589228	32589228	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RFPL2-91	NM_006605	exon1	c.C34A	p.L12I	GTGAAAGCCTGTT	.	107	61	227	0	.	0	0	0	0	0	5
NUP210	23225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	13368936	13368936	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NUP210-256	NM_024923	exon32	c.G4288C	p.D1430H	AGTCGTCTCTAGG	.	216	66	219	0	.	0	0	0	0	0	5
CDCP1	64866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45132893	45132893	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDCP1-117	NM_022842	exon7	c.A1765T	p.T589S	AGAAAGTCAGGCA	.	119	44	110	0	.	1	1	0	0	0	5
IL1RAP	3556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	190321957	190321957	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IL1RAP-91	NM_001167929	exon3	c.C105T	p.I35I	GCAAATCCAAGTG	.	168	30	130	0	.	0	0	0	0	0	5
ZFYVE28	57732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	2306391	2306391	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFYVE28-93	NM_020972	exon8	c.G1676T	p.C559F	AGAAGGCAGTTGG	.	125	16	116	0	.	4	4	0	0	0	4
TMEM155	132332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122681582	122681582	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM155-90	NM_152399	exon6	c.C260G	p.P87R	CTCTGTGGGCTTC	.	100	22	121	0	.	0	0	0	0	0	5
SORBS2	8470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	186535995	186535995	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SORBS2-91	NM_001270771	exon20	c.C3173T	p.S1058L	CTCAGTGACAGCT	.	91	10	96	0	.	0	0	0	0	0	4
NLN	57486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	65054536	65054536	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLN-90	NM_020726	exon2	c.G184C	p.E62Q	AGAACTGAGGAGC	.	194	65	168	0	.	7	6	1	0	0	5
PCDHB12	56124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140590650	140590650	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB12-93	NM_018932	exon1	c.G2171A	p.R724H	TCGGTCGCTGCTC	.	111	19	63	0	.	5	4	1	0	0	5
GCNT2	2651	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	10586905	10586905	+	Missense_Mutation	SNP	G	G	A	rs55795227	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GCNT2-92	NM_145655	exon1	c.G683A	p.R228Q	TTAAGCGAACTAA	.	194	31	169	1	.	0	0	0	0	0	3
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	12125518	12125518	+	Missense_Mutation	SNP	G	G	C	rs201245007	unknown;alternate_allele	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIVEP1-139	NM_002114	exon4	c.G5490C	p.L1830F	TAATTTGACAAAT	.	120	38	117	0	G|0.999;A|0.000	3	2	1	0	0	5
HSP90AB1	3326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	44217213	44217213	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HSP90AB1-658	NM_007355	exon3	c.A247G	p.T83A	GAACGTACCCTGA	.	96	8	100	0	.	1776	1367	393	3	13	4
FNDC1	84624	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	159652989	159652989	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FNDC1-138	NM_032532	exon11	c.C1445A	p.P482H	CTTCTCCCAGAGC	.	153	11	94	0	.	0	0	0	0	0	3
PMS2	5395	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	6029443	6029443	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PMS2-1083	NM_000535	exon10	c.C1132A	p.L378M	CATCCAGCAGTGG	.	93	21	133	1	.	4	2	2	0	0	3
LRRC61	65999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150034045	150034045	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC61-90	NM_023942	exon2	c.C95T	p.S32F	TGGAGTCCATCCT	.	93	16	106	0	.	0	0	0	0	0	5
CDCA2	157313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	25364323	25364323	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDCA2-90	NM_152562	exon15	c.G2141T	p.C714F	TTTCTTGTGCTTC	.	22	7	22	0	.	0	0	0	0	0	4
C8orf34	116328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	69552682	69552682	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C8orf34-153	NM_052958	exon8	c.C1177T	p.R393C	CAAGGCCGTCCTA	.	80	25	72	0	.	0	0	0	0	0	5
ZCCHC6	79670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	88967902	88967902	+	Silent	SNP	A	A	T	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZCCHC6-92	NM_024617	exon2	c.T213A	p.A71A	GGAAACAGCACAT	.	136	57	153	0	.	6	4	2	0	0	5
SLC2A6	11182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136338637	136338637	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC2A6-90	NM_017585	exon8	c.C1122T	p.G374G	TTCCAGGCCCGCA	.	143	67	159	0	.	1	1	0	0	0	5
XPNPEP1	7511	broad.mit.edu	37	10	111642322	111642322	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	XPNPEP1-94	NM_001167604	exon10	c.A909G	p.E303E	CCTGTATTCGGCT	.	89	14	84	2	.	27	20	7	0	0	1
CRIPAK	285464	ucsc.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRIPAK-90	NM_175918	exon1	c.T675C	p.D225D	TGCCGATGCGGAG	.	79	10	25	1	C|1.000;|0.000	23	15	8	0	0	1
PCDHB8	56128	hgsc.bcm.edu	37	5	140559493	140559493	+	Silent	SNP	C	C	T	rs34866056	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB8-131	NM_019120	exon1	c.C1878T	p.R626R	GGTGCGCACCGCC	.	144	11	7	0	.	97	78	19	0	0	1
ND4	0	broad.mit.edu	37	MT	11474	11474	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361381	exon1	c.G715A	p.G239S	AAACTAGGCGGCT	.	64	6	26	0	.	69077	67082	1971	8	16	1
SDF4	51150	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	1153176	1153176	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SDF4-154	NM_016547	exon7	c.C921T	p.P307P	GAGTGTGGGCACG	.	31	15	21	0	.	0	0	0	0	0	4
ACAP3	116983	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1230156	1230156	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACAP3-90	NM_030649	exon20	c.C1854T	p.G618G	CGAGCTGCCATCC	.	333	146	214	1	.	74	46	28	0	0	4
CPSF3L	54973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1247523	1247523	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CPSF3L-90	NM_001256456	exon18	c.C1630A	p.L544M	CCTTCAGGACGCT	.	56	21	22	0	.	1	1	0	0	0	5
DVL1	1855	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	1275439	1275439	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DVL1-658	NM_004421	exon8	c.G888T	p.E296D	GCCGGGCTCGATG	.	143	63	84	0	.	136	75	61	0	0	4
CALML6	163688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1848206	1848206	+	Missense_Mutation	SNP	A	A	T	rs200415259	unknown;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CALML6-90	NM_138705	exon4	c.A269T	p.N90I	TCTTCAACTGCGA	.	219	92	146	0	A|0.999;C|0.000	0	0	0	0	0	5
GABRD	2563	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1959038	1959038	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GABRD-92	NM_000815	exon5	c.G493A	p.D165N	GCCTGCGACATGG	.	244	110	163	1	.	11	11	0	0	0	3
PEX10	5192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	2341850	2341850	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PEX10-90	NM_002617	exon2	c.G153A	p.L51L	TGAGAGCAGCTCA	.	208	98	151	0	.	18	11	7	0	0	5
MMEL1	79258	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	2522472	2522472	+	Missense_Mutation	SNP	C	C	T	rs199926063	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MMEL1-90	NM_033467	exon24	c.G2297A	p.R766Q	GTGCCCCGGGCAC	.	175	73	52	1	.	18	5	13	0	0	3
ARHGEF16	27237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3380095	3380095	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGEF16-228	NM_014448	exon2	c.G447A	p.L149L	GAACCTGCGGAAC	.	354	161	239	0	.	1	1	0	0	0	5
CCDC27	148870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3672052	3672052	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC27-91	NM_152492	exon3	c.G474T	p.E158D	CGGAGAGATTGAC	.	199	82	132	0	.	0	0	0	0	0	5
C1orf174	339448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3807605	3807605	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C1orf174-68	NM_207356	exon3	c.A146C	p.K49T	GTGGCTTTGTGGG	.	45	28	34	0	.	0	0	0	0	0	5
RPL22	6146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RPL22-650	NM_000983	exon2	c.44delA	p.K15fs	TGCTTCTTTTTTT	.	44	20	24	0	.	0	0	0	0	0	3
CAMTA1	23261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	7721841	7721841	+	Silent	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CAMTA1-520	NM_015215	exon8	c.G720C	p.V240V	CTCGGTGGAACAG	.	525	235	324	0	.	2	2	0	0	0	5
VAMP3	9341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	7837354	7837354	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VAMP3-90	NM_004781	exon3	c.G207A	p.R69R	GAAGAGGAAATAT	.	161	58	126	0	.	231	106	125	0	0	5
PER3	8863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	7887208	7887208	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PER3-93	NM_016831	exon17	c.C2195T	p.A732V	GGTCGGCCGGCTG	.	196	104	86	0	.	14	5	9	0	0	5
ERRFI1	54206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	8074279	8074279	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ERRFI1-91	NM_018948	exon4	c.C380G	p.T127S	GGAGGGGTGGAAG	.	86	48	65	0	.	30	16	14	0	0	5
TMEM201	199953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	9657097	9657097	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM201-68	NM_001010866	exon3	c.G415A	p.A139T	GCCTTCGCTCCCC	.	308	112	150	0	.	15	7	8	0	0	5
UBE4B	10277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10190785	10190785	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBE4B-229	NM_001105562	exon14	c.G1825A	p.E609K	GTGGTTGAAAAAT	.	123	47	130	0	.	0	0	0	0	0	5
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10364624	10364624	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF1B-93	NM_183416	exon21	c.T3381C	p.C1127C	CCACTGTAGCCAG	.	361	169	276	1	.	5	3	2	0	0	5
CASZ1	54897	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10699787	10699787	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CASZ1-113	NM_001079843	exon21	c.T4492A	p.S1498T	TGAGTGAGGCCTT	.	155	58	105	2	.	2	1	1	0	0	4
DHRS3	9249	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	12632790	12632792	+	In_Frame_Del	DEL	GGA	GGA	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GGA	GGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DHRS3-91	NM_004753	exon5	c.788_790del	p.263_264del	TCCATGGGAGGAG	.	102	34	83	0	.	0	0	0	0	0	3
LOC440563	0	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	13183603	13183603	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001136561	exon2	c.G270A	p.V90V	TCGGTTCACTTTT	.	299	112	225	0	.	0	0	0	0	0	3
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	16174571	16174571	+	Silent	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPEN-298	NM_015001	exon1	c.G9T	p.R3R	GGTCCGGGAAACC	.	221	99	82	0	.	0	0	0	0	0	4
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	16174581	16174581	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPEN-298	NM_015001	exon1	c.C19T	p.H7Y	ACCAGGCATCTCT	.	247	109	93	0	.	2	2	0	0	0	4
EPHA2	1969	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	16461615	16461615	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPHA2-1419	NM_004431	exon7	c.G1498A	p.D500N	TGGTGTCTGGGGC	.	113	52	70	2	.	3	1	2	0	0	3
RAP1GAP	5909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	21940490	21940490	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAP1GAP-245	NM_001145658	exon8	c.G576A	p.R192R	CAGCAGCCGCAGG	.	121	61	111	0	.	0	0	0	0	0	5
EPHA8	2046	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22927299	22927299	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPHA8-1380	NM_020526	exon14	c.G2534A	p.R845Q	CCAACCGGGATGT	.	221	97	122	2	.	0	0	0	0	0	3
HNRNPR	10236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	23636987	23636987	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HNRNPR-24	NM_001102398	exon11	c.A1871T	p.Q624L	AATTCCTGGTTGT	.	71	25	62	0	.	109	53	56	0	0	5
MYOM3	127294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	24417405	24417405	+	Silent	SNP	G	G	A	rs201898557	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYOM3-93	NM_152372	exon12	c.C1314T	p.V438V	ACCTTCGACGAGG	.	195	78	145	0	G|0.999;A|0.001	0	0	0	0	0	5
GRHL3	57822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	24664169	24664169	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRHL3-91	NM_021180	exon6	c.A745G	p.K249E	CACATCAAGTCAG	.	209	87	165	0	.	0	0	0	0	0	5
STPG1	90529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	24706214	24706214	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001199012	exon5	c.T391C	p.S131P	TGCTGGAACACGA	.	96	33	82	0	.	11	5	6	0	0	5
SRRM1	10250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	24975468	24975468	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SRRM1-93	NM_005839	exon4	c.G353A	p.G118E	TCGCGGGAATCCC	.	42	13	37	0	.	36	15	21	0	0	5
GPR3	2827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27720657	27720657	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR3-91	NM_005281	exon2	c.G355A	p.A119T	GCAATGGCCTTTA	.	119	53	63	0	.	24	13	11	0	0	5
HCRTR1	3061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32084894	32084894	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HCRTR1-523	NM_001525	exon3	c.A101G	p.Y34C	TCCGCTATCTGTG	.	132	66	97	0	.	0	0	0	0	0	5
BAI2	576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32197006	32197006	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BAI2-526	NM_001703	exon29	c.G3775A	p.V1259I	TGTTGACCTCCTT	.	199	91	120	0	.	1	1	0	0	0	5
AGO3	192669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36437666	36437666	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_024852	exon4	c.T354A	p.D118E	AAAAGATCGACCT	.	273	113	231	0	.	8	2	6	0	0	5
AGO3	192669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36437741	36437741	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_024852	exon4	c.G429A	p.R143R	AGGACGGACCTTG	.	324	94	264	0	.	3	2	1	0	0	5
ERMAP	114625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43308843	43308843	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ERMAP-91	NM_018538	exon11	c.C1368T	p.I456I	TATAATCCTGTCC	.	121	49	111	0	.	16	12	4	0	0	5
PTPRF	5792	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	44083409	44083409	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPRF-232	NM_002840	exon25	c.G4198A	p.V1400I	ATAGGCGTCCCCG	.	342	134	235	1	.	0	0	0	0	0	3
TESK2	10420	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	45923405	45923405	+	Missense_Mutation	SNP	C	C	T	rs149714069	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TESK2-624	NM_007170	exon2	c.G53A	p.R18H	TCAAGACGCTCCA	.	114	47	80	1	C|0.998;T|0.002	1	1	0	0	0	4
PIK3R3	8503	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	46509408	46509410	+	In_Frame_Del	DEL	GTT	GTT	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GTT	GTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIK3R3-1309	NM_003629	exon10	c.1321_1323del	p.441_441del	GGAGTCGTTGTGC	.	169	74	142	0	.	0	0	0	0	0	3
PIK3R3	8503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46509521	46509521	+	Missense_Mutation	SNP	A	A	G	rs144541540	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIK3R3-1309	NM_003629	exon10	c.T1210C	p.C404R	TCACACAGTGCTT	.	113	53	100	0	A|1.000;G|0.000	33	16	17	0	0	5
EFCAB14	9813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47182080	47182080	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_014774	exon2	c.C221T	p.P74L	CAGAGCGGATAAC	.	264	107	238	0	.	80	46	34	0	0	5
FOXD2	2306	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	47904233	47904233	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FOXD2-226	NM_004474	exon1	c.G426A	p.Q142Q	CCTGCAGAGCCCC	.	321	136	210	0	.	3	0	3	0	0	4
DMRTA2	63950	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	50885264	50885264	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_032110	exon3	c.G702A	p.R234R	GCCGGGCCGCACC	.	109	50	18	0	.	0	0	0	0	0	3
BTF3L4	91408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	52552390	52552390	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BTF3L4-135	NM_001243767	exon5	c.T235G	p.X79E	ATCTTGTAGAAAA	.	86	33	48	0	.	0	0	0	0	0	5
TACSTD2	4070	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	59042424	59042424	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TACSTD2-90	NM_002353	exon1	c.C405T	p.R135R	GTCCGTGCGGCGC	.	141	67	34	1	.	1	1	0	0	0	4
HOOK1	51361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	60312772	60312772	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HOOK1-154	NM_015888	exon10	c.C844T	p.L282L	AAGCAGCTAATCG	.	139	58	127	0	.	3	3	0	0	0	5
ATG4C	84938	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	63282309	63282309	+	Missense_Mutation	SNP	A	A	T	rs11545528	unknown;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATG4C-91	NM_178221	exon4	c.A224T	p.N75I	CAGGAAATGTAGA	.	103	42	90	1	A|0.999;G|0.000	10	6	4	0	0	3
EFCAB7	84455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	63999139	63999139	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EFCAB7-68	NM_032437	exon5	c.T501C	p.Y167Y	ATTATATATGACA	.	62	30	52	0	.	16	6	10	0	0	5
DIRAS3	9077	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	68512838	68512838	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DIRAS3-848	NM_004675	exon2	c.T143C	p.V48A	TTCCCCACACCAG	.	204	82	215	1	.	9	8	1	0	0	4
ZNF326	284695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	90486370	90486370	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF326-91	NM_182976	exon10	c.C1194T	p.H398H	TGATCACATGATG	.	167	60	186	0	.	44	26	18	0	0	5
HFM1	164045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	91790300	91790300	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HFM1-112	NM_001017975	exon21	c.T2359C	p.Y787H	TATAATACCAAGC	.	180	83	143	0	.	1	0	1	0	0	5
TGFBR3	7049	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92200429	92200429	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TGFBR3-93	NM_001195683	exon5	c.G472A	p.E158K	GATGTTCATTTCC	.	98	23	117	2	.	202	129	73	0	0	4
KIAA1107	23285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92647016	92647016	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_015237	exon8	c.C2462T	p.S821F	CCTCCTCCGATGA	.	196	77	160	0	.	7	1	6	0	0	5
HIAT1	64645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100527406	100527406	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIAT1-90	NM_033055	exon5	c.T387C	p.V129V	TGCTGTTATCTCT	.	125	45	128	0	.	56	32	24	0	0	5
SASS6	163786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100586978	100586978	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SASS6-70	NM_194292	exon5	c.G439A	p.V147M	TCTCCACATCATT	.	53	23	43	0	.	6	4	2	0	0	5
VAV3	10451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	108298065	108298065	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VAV3-1339	NM_006113	exon12	c.T1157G	p.L386R	ATAGATAGCTGAA	.	69	19	83	0	.	1	1	0	0	0	5
HENMT1	113802	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109197353	109197353	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HENMT1-93	NM_144584	exon5	c.T383C	p.I128T	CACGTTATCAAGT	.	209	95	185	1	.	7	3	4	0	0	4
KIAA1324	57535	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	109740206	109740206	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1324-157	NM_020775	exon16	c.2232delC	p.I744fs	CATCATCCCCCCA	.	102	49	82	0	.	0	0	0	0	0	3
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109793092	109793092	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CELSR2-526	NM_001408	exon1	c.C391G	p.L131V	CTCACACTGCCCG	.	128	57	126	0	.	2	1	1	0	0	5
GPR61	83873	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	110085867	110085867	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR61-91	NM_031936	exon2	c.A223G	p.K75E	CTCCGAAAATTTG	.	219	16	170	0	.	0	0	0	0	0	3
GNAT2	2780	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110148988	110148988	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GNAT2-227	NM_005272	exon5	c.A532G	p.R178G	TGACTCTGGATCG	.	286	102	214	1	.	1	1	0	0	0	4
ALX3	257	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	110607490	110607490	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALX3-90	NM_006492	exon2	c.313delC	p.Q105fs	GCAGCTGGGGGAA	.	68	26	45	0	.	0	0	0	0	0	3
KCNA2	3737	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	111144784	111144784	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNA2-91	NM_001204269	exon4	c.A903G	p.R301R	CAGAGGTCTGCGT	.	74	37	45	1	.	0	0	0	0	0	3
PIFO	128344	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	111890299	111890299	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_181643	exon3	c.T163A	p.Y55N	AAGGGATATGGCT	.	68	28	56	1	.	0	0	0	0	0	4
LRIG2	9860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	113666622	113666622	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRIG2-229	NM_014813	exon18	c.C3097T	p.P1033S	AGAGAGCCAGACT	.	128	45	112	0	.	1	0	1	0	0	5
MAGI3	260425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114189207	114189207	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAGI3-524	NM_152900	exon12	c.C2098G	p.P700A	GGATCCCCAAAAT	.	210	93	169	0	.	2	0	2	0	0	5
HIPK1	204851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114506014	114506014	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIPK1-361	NM_152696	exon10	c.C2109T	p.S703S	GGGAAGCTGTACA	.	176	70	191	0	.	0	0	0	0	0	5
WARS2	10352	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	119683258	119683258	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WARS2-90	NM_015836	exon1	c.C10T	p.H4Y	TTGAGTGCAGCGC	.	53	22	32	0	.	6	3	3	0	0	4
PDE4DIP	9659	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	144854181	144854181	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDE4DIP-663	NM_014644	exon43	c.C6983T	p.A2328V	GTCCTTGCCTTCT	.	825	88	662	1	.	5	5	0	0	0	3
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	144871772	144871772	+	Silent	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDE4DIP-663	NM_014644	exon32	c.C5190A	p.G1730G	ACAGCAGCCAAGG	.	151	38	148	0	.	0	0	0	0	0	5
PIAS3	10401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145579296	145579296	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIAS3-658	NM_006099	exon5	c.C633T	p.L211L	CAACCTCTTTGTC	.	52	27	56	0	.	18	12	6	0	0	5
PRPF3	9129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150298336	150298336	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRPF3-91	NM_004698	exon3	c.A273G	p.L91L	AGAGCTAAAGGTA	.	176	63	190	0	.	0	0	0	0	0	5
GOLPH3L	55204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150636172	150636172	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GOLPH3L-91	NM_018178	exon3	c.C251T	p.A84V	CGCATGGCCAGCT	.	130	56	112	0	.	19	9	10	0	0	5
GABPB2	126626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151065754	151065754	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GABPB2-90	NM_144618	exon4	c.G363T	p.E121D	CGTAGAGTTACTT	.	123	52	105	0	.	15	8	7	0	0	5
RORC	6097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151787534	151787534	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RORC-227	NM_005060	exon5	c.C666G	p.S222R	CAGCTGGCTGCCT	.	306	146	240	0	.	0	0	0	0	0	5
RORC	6097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151789189	151789189	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RORC-227	NM_005060	exon4	c.C249T	p.C83C	GTGCTGGCATCGG	.	188	95	117	0	.	0	0	0	0	0	5
IVL	3713	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152883314	152883314	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IVL-93	NM_005547	exon2	c.G1041A	p.E347E	CCTGGAGCAGCAG	.	248	103	208	1	.	0	0	0	0	0	3
UBAP2L	9898	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154224048	154224048	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBAP2L-91	NM_001127320	exon14	c.T1583C	p.V528A	AGCCTGTCCTTTC	.	72	22	56	1	.	79	45	34	0	0	4
UBAP2L	9898	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	154224069	154224069	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBAP2L-91	NM_001127320	exon14	c.1604delC	p.T535fs	AGTCCACCCCCAC	.	64	14	60	0	.	0	0	0	0	0	3
FLAD1	80308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154962713	154962713	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FLAD1-93	NM_025207	exon4	c.T1344A	p.F448L	ACAGTTTCTACAG	.	155	65	98	0	.	51	40	11	0	0	5
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155452085	155452085	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASH1L-234	NM_018489	exon3	c.G576A	p.T192T	AGATGGCGTTGCA	.	95	38	74	0	.	10	4	6	0	0	5
KIAA0907	22889	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155885735	155885735	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA0907-90	NM_014949	exon13	c.C1574T	p.A525V	GGAAAGGCTGGTG	.	56	17	56	1	.	17	11	6	0	0	3
SH2D2A	9047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156779155	156779155	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SH2D2A-90	NM_001161441	exon7	c.A872G	p.N291S	GGCTCATTGTAGA	.	83	26	73	0	.	0	0	0	0	0	5
SH2D2A	9047	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156779558	156779558	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SH2D2A-90	NM_001161441	exon6	c.A639G	p.S213S	AAAGTTTGATTCT	.	95	47	51	1	.	0	0	0	0	0	3
ARHGEF11	9826	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156926236	156926236	+	Silent	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGEF11-233	NM_198236	exon19	c.A1647T	p.L549L	GAACGGTAGCCAC	.	134	66	86	1	.	27	17	10	0	0	4
ARHGEF11	9826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156954154	156954154	+	Missense_Mutation	SNP	A	A	T	rs151017400	unknown;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGEF11-233	NM_198236	exon3	c.T200A	p.V67D	ACCAGAACAATGC	.	229	92	188	0	A|1.000;C|0.000	16	10	6	0	0	5
CD5L	922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157803262	157803262	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CD5L-91	NM_005894	exon5	c.C759T	p.C253C	CCCAGAGCAGAGG	.	55	30	52	0	.	0	0	0	0	0	5
CD5L	922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157804424	157804424	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CD5L-91	NM_005894	exon4	c.A491G	p.Q164R	CCTGTCTGGCACA	.	90	32	84	0	.	0	0	0	0	0	5
KIRREL	55243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158064671	158064671	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIRREL-91	NM_018240	exon15	c.A2035G	p.T679A	GACACAACCAGCC	.	239	96	173	0	.	6	6	0	0	0	5
OR10K2	391107	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158389762	158389762	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR10K2-69	NM_001004476	exon1	c.T895A	p.S299T	GAGCTGATTTGAA	.	167	62	133	1	.	0	0	0	0	0	3
IGSF9	57549	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	159898610	159898610	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGSF9-156	NM_001135050	exon19	c.2568delG	p.G856fs	AGTGGGCCCCATC	.	37	12	36	0	.	0	0	0	0	0	3
KCNJ10	3766	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	160011970	160011970	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNJ10-91	NM_002241	exon2	c.C353T	p.A118V	AGGAAGGCTCCAG	.	134	55	96	0	.	0	0	0	0	0	4
F11R	50848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	160969185	160969185	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	F11R-92	NM_016946	exon9	c.815+1G>A	.	CACTCACCCTTTC	.	195	71	196	0	.	0	0	0	0	0	4
TSTD1	100131187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161007709	161007709	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001113207	exon3	c.A290T	p.Y97F	CCAGTGTATCCAA	.	117	48	72	0	.	0	0	0	0	0	5
USP21	27005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161130942	161130942	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP21-660	NM_001014443	exon3	c.G512A	p.S171N	TGTTCAGCATACG	.	91	43	64	0	.	25	10	15	0	0	5
NDUFS2	4720	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	161173239	161173239	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NDUFS2-91	NM_001166159	exon2	c.G108T	p.Q36H	TCGGCAGTGGCAG	.	148	10	106	0	.	114	106	8	0	0	3
FCGR3A	2214	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	161514700	161514700	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FCGR3A-91	NM_000569	exon4	c.C476T	p.P159L	TGAATAGGGTCTT	.	230	81	197	1	.	9	9	0	0	0	3
UHMK1	127933	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	162467903	162467903	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UHMK1-358	NM_144624	exon1	c.A113T	p.Y38F	CGGTGTATCGGGT	.	194	72	58	0	.	21	8	13	0	0	4
FAM78B	149297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	166135378	166135378	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM78B-91	NM_001017961	exon1	c.G108A	p.E36E	CGAGGTCTCCTCG	.	195	76	135	0	.	2	1	1	0	0	5
SELP	6403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	169578907	169578907	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SELP-94	NM_003005	exon8	c.G1168C	p.E390Q	GACTCTCCAGCGG	.	102	50	74	0	.	0	0	0	0	0	5
FMO2	2327	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	171168622	171168622	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FMO2-91	NM_001460	exon5	c.G622A	p.A208T	AATGCTGCTCAGG	.	241	108	196	1	.	0	0	0	0	0	3
ANKRD45	339416	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	173616087	173616087	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD45-90	NM_198493	exon3	c.C394G	p.L132V	CATCCAGTTCTAC	.	139	56	114	1	.	0	0	0	0	0	4
ACBD6	84320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	180471390	180471390	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACBD6-91	NM_032360	exon1	c.A12G	p.S4S	CAGGAATGATGAA	.	274	132	243	1	.	54	29	25	0	0	5
KIAA1614	57710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	180904988	180904988	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1614-26	NM_020950	exon5	c.G1943A	p.R648Q	GACTGCGACTGCG	.	158	70	56	0	.	2	2	0	0	0	5
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181762806	181762806	+	Silent	SNP	A	A	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNA1E-95	NM_001205293	exon45	c.A5904C	p.P1968P	GGAGCCAGAGGTT	.	150	55	120	0	.	0	0	0	0	0	5
ZNF648	127665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182026897	182026897	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF648-91	NM_001009992	exon2	c.C249G	p.D83E	GGAGGAGTCAGAG	.	148	77	117	0	.	0	0	0	0	0	5
PLA2G4A	5321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186908147	186908147	+	Missense_Mutation	SNP	T	T	C	rs201251994	unknown;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLA2G4A-721	NM_024420	exon9	c.T703C	p.S235P	TATATGTCAACCT	.	61	29	70	0	T|0.999;A|0.001	0	0	0	0	0	5
B3GALT2	8707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	193149518	193149518	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	B3GALT2-91	NM_003783	exon2	c.A1175G	p.K392R	CAGTATTTTATCA	.	140	65	139	0	.	0	0	0	0	0	5
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	197073232	197073232	+	Nonsense_Mutation	DEL	T	T	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASPM-615	NM_018136	exon18	c.5149delA	p.I1717X	CAGCTATTTTTTT	.	54	20	40	0	.	0	0	0	0	0	3
CAMSAP2	23271	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	200827020	200827020	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_203459	exon17	c.4270delA	p.K1424fs	ATCACTAAAAAAA	.	88	36	86	0	.	0	0	0	0	0	3
KIF21B	23046	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	200974545	200974545	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF21B-96	NM_017596	exon5	c.C623T	p.A208V	GACAGGGCCCCCT	.	155	73	117	2	.	2	2	0	0	0	3
FMOD	2331	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	203317354	203317354	+	Silent	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FMOD-137	NM_002023	exon2	c.C45G	p.L15L	CTGGGAGAGGGAG	.	200	90	142	1	.	0	0	0	0	0	3
EIF2D	1939	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	206769135	206769135	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EIF2D-92	NM_006893	exon13	c.C1441T	p.P481S	CAATGGGCTCTTG	.	135	66	100	1	.	60	33	27	0	0	4
RCOR3	55758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	211462519	211462519	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RCOR3-91	NM_001136224	exon8	c.721-1G>A	.	CTCTTAGGGTAAT	.	204	81	191	0	.	0	0	0	0	0	4
VASH2	79805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	213125126	213125126	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VASH2-90	NM_024749	exon2	c.T242C	p.V81A	AAATGGTGGGCGC	.	65	30	66	0	.	0	0	0	0	0	5
TAF1A	9015	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	222737423	222737423	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAF1A-44	NM_005681	exon8	c.C939T	p.F313F	TGTATGGAATTCC	.	253	85	263	0	.	4	2	2	0	0	4
C1orf65	164127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	223568189	223568189	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C1orf65-91	NM_152610	exon1	c.C1372T	p.R458W	TTCCAGCGGTCCC	.	268	110	193	0	.	0	0	0	0	0	5
CAPN2	824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	223947169	223947169	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CAPN2-523	NM_001748	exon12	c.G1515C	p.K505N	TGAAAAGAAAGCT	.	61	22	42	0	.	5	2	3	0	0	5
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	228475560	228475560	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OBSCN-403	NM_001271223	exon41	c.C10997T	p.A3666V	AGGGTGCCATGCT	.	214	16	180	0	.	1	1	0	0	0	3
CAPN9	10753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	230921739	230921739	+	Silent	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CAPN9-91	NM_006615	exon12	c.A1494T	p.G498G	GGATGGAAATGTA	.	275	121	200	0	.	0	0	0	0	0	5
TTC13	79573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231079568	231079568	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTC13-92	NM_024525	exon6	c.T656C	p.F219S	TGCTCAAATACCT	.	43	20	50	0	.	8	5	3	0	0	5
GNPAT	8443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231396359	231396359	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GNPAT-156	NM_014236	exon3	c.C368T	p.A123V	TTTGTGCCTTCAC	.	53	22	51	0	.	21	10	11	0	0	5
EXOC8	149371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231471391	231471391	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EXOC8-91	NM_175876	exon1	c.G2101A	p.A701T	GCTTGGCAGGTTT	.	139	62	119	0	.	16	10	6	0	0	5
FMN2	56776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	240255872	240255872	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FMN2-145	NM_020066	exon1	c.463delG	p.G155fs	AGGGTCGGGGGCC	.	150	68	128	0	.	0	0	0	0	0	3
OR14I1	401994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248844883	248844883	+	Silent	SNP	G	G	A	rs201585486	unknown;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR14I1-46	NM_001004734	exon1	c.C723T	p.P241P	GAGCTGGGGGGAG	.	141	86	118	0	G|0.999;C|0.001	0	0	0	0	0	5
SH3BP5L	80851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	249106288	249106288	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SH3BP5L-90	NM_030645	exon7	c.T993C	p.D331D	CAGGGTATCGGTG	.	119	50	39	0	.	20	8	12	0	0	5
DIP2C	22982	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	433695	433695	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DIP2C-156	NM_014974	exon14	c.G1652A	p.G551D	AGGATGCCATGCC	.	313	135	208	2	.	0	0	0	0	0	3
ADARB2	105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	1284298	1284298	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADARB2-153	NM_018702	exon5	c.G1257A	p.E419E	GAGGTGCTCGCCG	.	181	68	89	0	.	0	0	0	0	0	5
PITRM1	10531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	3205972	3205972	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PITRM1-91	NM_014889	exon7	c.A736T	p.T246S	CCCATGTAAGCTC	.	174	81	127	0	.	101	58	43	0	0	5
UCN3	114131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	5415774	5415774	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UCN3-90	NM_053049	exon2	c.91delC	p.P31fs	GCCAAGCCCATCT	.	98	48	75	0	.	0	0	0	0	0	3
SFMBT2	57713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	7213881	7213881	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SFMBT2-141	NM_001029880	exon19	c.G2391A	p.P797P	GGTCGGCGGGCAC	.	39	21	19	0	.	4	0	4	0	0	4
ITIH2	3698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	7788557	7788557	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITIH2-93	NM_002216	exon20	c.C2583T	p.G861G	GCTAGGCCAGTTC	.	226	101	202	0	.	0	0	0	0	0	5
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	16930425	16930425	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CUBN-166	NM_001081	exon56	c.C8896A	p.H2966N	CTAAGTGGAAGGA	.	66	29	75	0	.	0	0	0	0	0	5
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17024637	17024637	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CUBN-166	NM_001081	exon31	c.T4541C	p.F1514S	GCCTGGAAAATCC	.	51	26	27	0	.	0	0	0	0	0	5
CUBN	8029	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17130173	17130173	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CUBN-166	NM_001081	exon15	c.A1937T	p.D646V	AGGTAATCTTTGT	.	87	40	77	1	.	0	0	0	0	0	4
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17146555	17146555	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CUBN-166	NM_001081	exon12	c.T1280C	p.V427A	CAGTTGACACCTG	.	281	117	244	0	.	0	0	0	0	0	5
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	24762792	24762792	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1217-98	NM_019590	exon6	c.1482delC	p.G494fs	CCACGGCCCCCCT	.	99	38	74	0	.	0	0	0	0	0	3
ANKRD26	22852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27324108	27324108	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD26-138	NM_014915	exon24	c.A3271G	p.T1091A	CCAAAGTCTTTTC	.	108	56	105	1	.	2	1	1	0	0	4
MASTL	84930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27470451	27470451	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MASTL-522	NM_001172303	exon11	c.C2423T	p.A808V	ATAATGCTCAAAG	.	58	24	99	0	.	32	20	12	0	0	5
MKX	283078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27964211	27964211	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MKX-91	NM_001242702	exon7	c.T1006G	p.S336A	TATGGGACGACTT	.	102	39	62	0	.	1	1	0	0	0	5
ZNF438	220929	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	31139259	31139259	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF438-154	NM_182755	exon7	c.G75C	p.R25S	ACCTTTCCTACTC	.	133	64	132	2	.	0	0	0	0	0	3
FZD8	8325	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	35929513	35929513	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FZD8-612	NM_031866	exon1	c.G845A	p.G282D	CACAGGCCGATCC	.	185	91	140	1	.	7	3	4	0	0	4
ANKRD30A	91074	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	37442574	37442574	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD30A-161	NM_052997	exon13	c.A1614G	p.I538M	TAAAATAAATGGA	.	401	63	390	1	.	0	0	0	0	0	3
ANKRD30A	91074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	37508025	37508025	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD30A-161	NM_052997	exon34	c.G3217A	p.E1073K	GAAAAGGAAAATA	.	230	94	212	0	.	0	0	0	0	0	5
ALOX5	240	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	45869760	45869760	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALOX5-228	NM_000698	exon1	c.C33T	p.G11G	CACTGGCAGCCAG	.	158	48	76	0	.	0	0	0	0	0	4
MARCH8	220972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	46028623	46028623	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MARCH8-68	NM_001002266	exon2	c.T37C	p.S13P	CCTGGGATGGAAT	.	117	50	79	0	.	5	4	1	0	0	5
GPRIN2	9721	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	47000008	47000008	+	Silent	SNP	G	G	A	rs111800394	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPRIN2-90	NM_014696	exon3	c.G1128A	p.P376P	GGTGCCGTCCCCT	.	200	49	123	1	G|0.500;A|0.500	0	0	0	0	0	3
WDFY4	57705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	49951020	49951020	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDFY4-22	NM_020945	exon12	c.T1886C	p.L629P	CTCTGCTCCGGAT	.	26	7	32	0	.	0	0	0	0	0	4
WDFY4	57705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	49951058	49951058	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDFY4-22	NM_020945	exon12	c.A1924T	p.R642X	GCCTTCAGAGTCT	.	38	18	57	0	.	0	0	0	0	0	5
C10orf107	219621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	63441022	63441022	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C10orf107-90	NM_173554	exon2	c.T22C	p.Y8H	ATTCAGTATTCAA	.	40	23	34	0	.	0	0	0	0	0	5
ZNF365	22891	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	64159513	64159513	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF365-92	NM_014951	exon5	c.1189delA	p.K397fs	ATGGCTAAAAAAA	.	109	49	91	0	.	0	0	0	0	0	3
CCAR1	55749	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	70496802	70496802	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCAR1-159	NM_018237	exon3	c.A243G	p.Q81Q	ATTACAACAGGTA	.	199	70	187	1	.	0	0	0	0	0	3
C10orf35	219738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71391540	71391540	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C10orf35-92	NM_145306	exon3	c.A41T	p.D14V	AGGATGACGACCC	.	254	102	181	0	.	26	10	16	0	0	5
PPA1	5464	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	71969033	71969033	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPA1-153	NM_021129	exon8	c.A653T	p.D218V	ATAATATCAATGG	.	74	28	84	0	.	489	281	208	0	0	4
ADAMTS14	140766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	72434451	72434451	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS14-232	NM_080722	exon2	c.C222T	p.P74P	GCCACCCACACTA	.	75	32	64	0	.	0	0	0	0	0	5
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73553114	73553114	+	Silent	SNP	G	G	A	rs142788731	by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDH23-563	NM_022124	exon46	c.G6429A	p.T2143T	GCTAACGGTGGTG	.	196	84	147	0	G|0.999;A|0.001	0	0	0	0	0	5
SYNPO2L	79933	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75407283	75407283	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SYNPO2L-91	NM_001114133	exon4	c.G2127A	p.M709I	GGGAGCCATTGGA	.	35	14	23	0	.	0	0	0	0	0	4
SYNPO2L	79933	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	75408109	75408109	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SYNPO2L-91	NM_001114133	exon4	c.T1301C	p.V434A	GGGAGCACAGCTG	.	20	8	19	0	.	2	0	2	0	0	4
NDST2	8509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75566103	75566103	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NDST2-91	NM_003635	exon6	c.T1378C	p.Y460H	GGGGATACTCCTC	.	92	40	61	0	.	17	6	11	0	0	5
NDST2	8509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75567679	75567679	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NDST2-91	NM_003635	exon3	c.G468A	p.L156L	GTCTAGCAGTTCC	.	191	74	147	0	.	16	10	6	0	0	5
DLG5	9231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	79581401	79581401	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DLG5-98	NM_004747	exon15	c.G2841A	p.W947X	CTTGGGCCAGGTC	.	68	29	47	0	.	7	4	3	0	0	5
DLG5	9231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	79613277	79613277	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DLG5-98	NM_004747	exon5	c.C699T	p.L233L	ACTCAGGAGCCGG	.	41	14	29	0	.	10	3	7	0	0	5
TMEM254	80195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	81838509	81838510	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001270370	exon1	c.54_55del	p.18_19del	CTGGTTCACAGTC	.	89	24	74	0	.	0	0	0	0	0	3
ANXA11	311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	81927056	81927056	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANXA11-91	NM_145868	exon6	c.G575T	p.G192V	ATGGTGCCTCGGC	.	108	41	79	0	.	44	14	29	0	1	5
LDB3	11155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	88469694	88469694	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LDB3-92	NM_001171610	exon9	c.C1133T	p.A378V	CAGTGGCCGCCTC	.	46	19	51	0	.	0	0	0	0	0	5
BMPR1A	657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	88683197	88683197	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BMPR1A-1619	NM_004329	exon12	c.T1407A	p.D469E	CGAAGATATGCGT	.	240	101	160	0	.	26	15	11	0	0	5
PLCE1	51196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	96006241	96006241	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLCE1-229	NM_016341	exon8	c.C2959T	p.H987Y	TTATTGCACTTCG	.	202	111	187	0	.	5	2	3	0	0	5
ALDH18A1	5832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	97393407	97393407	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALDH18A1-117	NM_002860	exon7	c.559-1G>C	.	CAAAATCTAAAAG	.	130	64	86	0	.	0	0	0	0	0	5
ANKRD2	26287	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	99338087	99338087	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD2-90	NM_001129981	exon3	c.A361T	p.K121X	CGGAAGAAACGCA	.	152	62	131	2	.	0	0	0	0	0	3
HPS1	3257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	100202968	100202968	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HPS1-91	NM_000195	exon3	c.C30T	p.G10G	CTCTGCGCCCTCA	.	201	72	142	0	.	54	26	28	0	0	5
ABCC2	1244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	101594287	101594287	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCC2-91	NM_000392	exon24	c.G3409A	p.V1137I	GTATCTGTTCAGG	.	228	94	155	0	.	0	0	0	0	0	5
LDB1	8861	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	103867930	103867930	+	Missense_Mutation	SNP	C	C	T	rs141161148	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LDB1-289	NM_001113407	exon11	c.G1156A	p.A386T	TGTTGGCGCCCAG	.	188	75	154	1	C|0.999;T|0.001	82	37	45	0	0	3
PPRC1	23082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103900009	103900009	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPRC1-227	NM_015062	exon5	c.G1744A	p.A582T	GCCCAAGCCAGCC	.	239	98	197	0	.	22	10	12	0	0	5
SLK	9748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105750547	105750547	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLK-549	NM_014720	exon2	c.C265T	p.P89S	GATCACCCAAATA	.	83	35	88	0	.	44	25	19	0	0	5
SORCS3	22986	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	106675687	106675687	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SORCS3-99	NM_014978	exon3	c.G792C	p.R264S	CAAAAGGAAGGTA	.	226	12	208	0	.	0	0	0	0	0	3
XPNPEP1	7511	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	111633180	111633180	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	XPNPEP1-94	NM_020383	exon16	c.G1397A	p.G466D	GTGGTGCCATCCC	.	197	81	147	1	.	4	3	1	0	0	3
ADRA2A	150	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	112838493	112838493	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADRA2A-90	NM_000681	exon1	c.A739G	p.S247G	CCACCCAGCCGCC	.	43	16	21	1	.	0	0	0	0	0	3
C10orf118	55088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	115891096	115891096	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C10orf118-92	NM_018017	exon13	c.1912-1G>T	.	ACTTTCCTGAATA	.	96	44	58	0	.	0	0	0	0	0	5
RGS10	6001	ucsc.edu;bcgsc.ca;mdanderson.org	37	10	121259635	121259635	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RGS10-226	NM_001005339	exon5	c.A536T	p.Y179F	GTGTTATAAATTC	.	34	17	31	1	.	16	12	4	0	0	3
FGFR2	2263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123324025	123324025	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FGFR2-2607	NM_001144914	exon3	c.A445G	p.N149D	TGTTGTTACTGTT	.	128	55	91	0	.	0	0	0	0	0	5
HMX2	3167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	124909596	124909596	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HMX2-90	NM_005519	exon2	c.C779T	p.S260L	ACCTCTCGGCCTT	.	74	29	14	0	.	1	0	1	0	0	4
DHX32	55760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127555708	127555708	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DHX32-290	NM_018180	exon2	c.G327A	p.Q109Q	CCCGTGCTGGTAG	.	138	53	116	0	.	35	19	16	0	0	5
PWWP2B	170394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134219477	134219477	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PWWP2B-90	NM_001098637	exon2	c.G1473A	p.G491G	CGTGGGGGACATC	.	659	431	263	1	.	131	41	89	1	0	5
GPR123	84435	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134942688	134942688	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR123-90	NM_001083909	exon7	c.C1356T	p.R452R	CTCGCGCACAGAC	.	236	114	66	1	.	0	0	0	0	0	4
ADAM8	101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	135086884	135086884	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAM8-90	NM_001164489	exon6	c.C447T	p.G149G	CCGTCCGCCCTCG	.	242	100	114	0	.	0	0	0	0	0	5
DEAF1	10522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	686974	686974	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DEAF1-90	NM_021008	exon5	c.C688T	p.Q230X	CCCCCTGCTTGAT	.	116	76	166	1	.	8	6	2	0	0	4
OR52D1	390066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5510498	5510498	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR52D1-68	NM_001005163	exon1	c.G562A	p.A188T	GGCATTGCCCGAC	.	67	53	90	0	.	0	0	0	0	0	5
DNHD1	144132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6566347	6566347	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNHD1-24	NM_144666	exon21	c.C4178T	p.A1393V	TGCATGCTGTGAG	.	172	134	186	0	.	0	0	0	0	0	5
LDHA	3939	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	18428915	18428915	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LDHA-650	NM_001165415	exon7	c.T817G	p.C273G	CTGATCTGTGATT	.	46	29	67	1	.	1655	26	1629	0	0	3
IGSF22	283284	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	18728522	18728522	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGSF22-140	NM_173588	exon21	c.T3519A	p.N1173K	GATTTCATTCCGA	.	121	96	152	0	.	1	1	0	0	0	4
PTPN5	84867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18765655	18765655	+	Silent	SNP	C	C	T	rs150000507	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPN5-229	NM_032781	exon4	c.G189A	p.S63S	GGGCGGCGAGGGA	.	42	26	69	0	C|0.999;T|0.001	0	0	0	0	0	5
AGBL2	79841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47701524	47701524	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AGBL2-92	NM_024783	exon14	c.2016+1G>A	.	TTTTTACCTTCAT	.	32	23	43	0	.	0	0	0	0	0	4
OR5M11	219487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56310506	56310506	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001005245	exon1	c.T228C	p.N76N	GGTTGCATTTGAT	.	102	77	157	0	.	0	0	0	0	0	5
DDB1	1642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61099071	61099071	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DDB1-661	NM_001923	exon2	c.G154A	p.V52I	CTTTGACGGGCCG	.	91	18	142	0	.	88	59	29	0	0	5
BEST1	7439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61723382	61723382	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BEST1-90	NM_004183	exon4	c.T440A	p.V147D	CCGCAGTCTACAA	.	139	95	67	0	.	3	0	3	0	0	5
SLC22A25	387601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62931536	62931536	+	Silent	SNP	A	A	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC22A25-72	NM_199352	exon9	c.T1404G	p.A468A	TCCAGTAGCTCTT	.	152	116	236	0	.	0	0	0	0	0	5
SLC22A12	116085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64368345	64368345	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC22A12-91	NM_144585	exon9	c.C1533T	p.A511A	CCTGGCCGCACTG	.	37	33	52	0	.	0	0	0	0	0	5
TCIRG1	10312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	67817504	67817504	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TCIRG1-227	NM_006019	exon17	c.2089delG	p.G697fs	AAGGCAGGGGGCC	.	59	35	79	0	.	0	0	0	0	0	3
SUV420H1	51111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67938597	67938597	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SUV420H1-228	NM_017635	exon9	c.A862T	p.T288S	ATGCTGTATCTCG	.	59	42	86	0	.	13	0	13	0	0	5
P2RY2	5029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	72945404	72945404	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	P2RY2-503	NM_176071	exon3	c.C200T	p.A67V	GGAATGCGTCCAC	.	217	105	164	0	.	58	20	38	0	0	5
P2RY2	5029	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	72945486	72945486	+	Silent	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	P2RY2-503	NM_176071	exon3	c.C282A	p.A94A	CTACGCCCGCGGC	.	151	75	107	0	.	12	12	0	0	0	4
P2RY2	5029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	72945487	72945487	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	P2RY2-503	NM_176071	exon3	c.C283T	p.R95C	TACGCCCGCGGCG	.	150	74	107	0	.	12	12	0	0	0	5
P2RY2	5029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	72945489	72945489	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	P2RY2-503	NM_176071	exon3	c.C285T	p.R95R	CGCCCGCGGCGAC	.	150	72	105	0	.	13	13	0	0	0	5
C11orf30	56946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	76169377	76169377	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C11orf30-232	NM_020193	exon5	c.G396A	p.V132V	TCCAGTGCCTGCA	.	60	43	101	0	.	2	0	2	0	0	5
C11orf54	28970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	93488407	93488407	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C11orf54-90	NM_014039	exon6	c.A362G	p.H121R	GTGAACACAAGCC	.	72	53	98	0	.	12	0	12	0	0	5
GPR83	10888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94134121	94134121	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR83-92	NM_016540	exon1	c.A293G	p.K98R	TGGTTCTTGAAGA	.	111	90	177	0	.	0	0	0	0	0	5
PIH1D2	120379	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	111943748	111943748	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIH1D2-69	NM_001082619	exon2	c.C151A	p.Q51K	AAAGCTGTGGTTC	.	22	16	36	0	.	0	0	0	0	0	3
C11orf57	55216	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	111953575	111953578	+	Frame_Shift_Del	DEL	AGAG	AGAG	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AGAG	AGAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C11orf57-155	NM_001082969	exon6	c.761_764del	p.254_255del	GGAAAAAGAGAGA	.	31	23	41	0	.	0	0	0	0	0	3
SDHD	6392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111957633	111957633	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SDHD-226	NM_003002	exon1	c.G2A	p.C1Y	ACGAGATGGCGGT	.	114	85	189	0	.	38	4	34	0	0	5
RNF214	257160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117153198	117153198	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RNF214-90	NM_207343	exon12	c.C1791G	p.I597M	ACTTATCCAGTTG	.	83	60	152	0	.	20	2	18	0	0	5
POU2F3	25833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	120180235	120180235	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POU2F3-92	NM_001244682	exon10	c.G1014A	p.E338E	AAAGGAGAAGCGA	.	110	69	158	0	.	0	0	0	0	0	5
GRIK4	2900	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	120531058	120531058	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRIK4-92	NM_014619	exon1	c.C31T	p.L11F	GTGCTGCTTCCTG	.	39	30	60	0	.	5	1	4	0	0	4
TECTA	7007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	121016701	121016701	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TECTA-225	NM_005422	exon11	c.C3981T	p.C1327C	GAACTGCCTGTTT	.	64	38	96	0	.	1	0	1	0	0	5
NFRKB	4798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	129754659	129754659	+	Silent	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NFRKB-93	NM_006165	exon5	c.C798G	p.T266T	ATCCGTGGTTGAA	.	48	36	80	0	.	0	0	0	0	0	5
GLB1L3	112937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134147638	134147638	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GLB1L3-69	NM_001080407	exon3	c.C194T	p.S65F	ATCGATCTGTGGG	.	59	47	107	0	.	0	0	0	0	0	5
GLB1L2	89944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134240273	134240273	+	Missense_Mutation	SNP	G	G	A	rs202239114	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GLB1L2-25	NM_138342	exon12	c.G1195A	p.A399T	TGGGACGCCCTCA	.	102	81	130	0	G|0.999;A|0.001	0	0	0	0	0	5
KDM5A	5927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	431710	431710	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KDM5A-227	NM_001042603	exon17	c.C2299T	p.L767L	CTTCCAGCATTAC	.	11	11	22	0	.	5	0	5	0	0	5
FGF23	8074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	4479600	4479600	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FGF23-660	NM_020638	exon3	c.A665G	p.D222G	AATGGGTCACTGG	.	85	69	79	0	.	0	0	0	0	0	5
VAMP1	6843	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6575152	6575152	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VAMP1-90	NM_014231	exon3	c.A144G	p.I48M	CACACGTATGATG	.	61	51	86	1	.	5	0	5	0	0	4
NCAPD2	9918	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6626132	6626132	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NCAPD2-660	NM_014865	exon10	c.G1126C	p.V376L	CATGATGTCAACT	.	151	116	203	2	.	21	3	18	0	0	3
GNB3	2784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6954905	6954905	+	Silent	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GNB3-227	NM_002075	exon10	c.A855T	p.L285L	CCTACTATTCGCT	.	125	95	134	0	.	2	0	2	0	0	5
CLEC4C	170482	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7898983	7898983	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLEC4C-93	NM_130441	exon3	c.C68T	p.S23F	GCCATGGACCAGA	.	33	26	88	1	.	0	0	0	0	0	4
RIMKLB	57494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8926136	8926136	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_020734	exon7	c.T917C	p.L306P	CCTCCCTTCTACC	.	96	75	118	0	.	2	1	1	0	0	5
KLRC4-KLRK1	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	10532370	10532370	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001199805	exon9	c.G170A	p.C57Y	ATGAAGCAGCAGA	.	48	40	90	0	.	0	0	0	0	0	4
CSDA	8531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10856704	10856704	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSDA-586	NM_003651	exon7	c.C824T	p.A275V	AGTTGTGCTCCCT	.	96	65	123	0	.	93	13	78	1	1	5
MANSC1	54682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	12483292	12483292	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MANSC1-90	NM_018050	exon4	c.T965G	p.F322C	TCTGTAAACGGTA	.	79	63	144	0	.	6	6	0	0	0	5
LOH12CR1	118426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	12510415	12510415	+	Missense_Mutation	SNP	G	G	C	rs151180790	unknown;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LOH12CR1-91	NM_058169	exon1	c.G30C	p.E10D	GGCCGAGAGCCGA	.	161	107	215	1	G|1.000;A|0.000	6	0	6	0	0	4
EMP1	2012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	13367530	13367530	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EMP1-90	NM_001423	exon5	c.C379T	p.Q127X	GGAACGCAGTATC	.	108	85	138	0	.	11	11	0	0	0	5
ABCC9	10060	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	22069967	22069967	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCC9-96	NM_005691	exon4	c.C477T	p.G159G	GTCCAAGCCAGAC	.	63	45	92	1	.	5	5	0	0	0	4
SOX5	6660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	23818387	23818387	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SOX5-655	NM_006940	exon7	c.G922A	p.A308T	ATCCAGCCTTATA	.	42	33	66	0	.	0	0	0	0	0	5
FAR2	55711	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	29446360	29446360	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAR2-90	NM_018099	exon3	c.A317G	p.N106S	GTACAAACATAAT	.	80	34	72	0	.	0	0	0	0	0	4
PKP2	5318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	32996207	32996207	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKP2-92	NM_004572	exon6	c.C1419T	p.G473G	CACCGCGCCCGGC	.	44	19	35	0	.	0	0	0	0	0	5
SLC38A1	81539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	46591521	46591521	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC38A1-518	NM_030674	exon16	c.A1344T	p.K448N	AGTTCCTTTATCT	.	82	41	79	0	.	1	0	1	0	0	5
SLC38A2	54407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	46756130	46756130	+	Silent	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC38A2-226	NM_018976	exon15	c.T1359A	p.L453L	AGAAGGAAGAATA	.	125	45	103	0	.	24	14	10	0	0	5
PCED1B	91523	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	47629462	47629462	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_138371	exon2	c.616delA	p.K206fs	GCACGTAAACATA	.	91	32	69	0	.	0	0	0	0	0	3
COL2A1	1280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48383041	48383041	+	Silent	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL2A1-92	NM_001844	exon18	c.T1092A	p.G364G	GCCAGGACCACCA	.	127	46	105	0	.	0	0	0	0	0	5
WNT1	7471	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49375164	49375164	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WNT1-1083	NM_005430	exon4	c.854delC	p.S285fs	CGCCCTCCCCCCA	.	133	58	34	0	.	0	0	0	0	0	3
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49416426	49416426	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLL2-612	NM_003482	exon51	c.A16285G	p.T5429A	TGATGGTGCCAAT	.	297	34	236	0	.	43	39	3	1	0	4
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49437705	49437705	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLL2-612	NM_003482	exon22	c.G5265A	p.Q1755Q	TCGCCGCTGTTGC	.	212	92	161	0	.	4	2	2	0	0	5
LMBR1L	55716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49491821	49491821	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LMBR1L-227	NM_018113	exon16	c.G1308A	p.V436V	GAGGAACACAATG	.	150	48	95	0	.	16	6	10	0	0	5
FAM186A	121006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50725578	50725578	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM186A-68	NM_001145475	exon6	c.T6723C	p.L2241L	TTGACTAAGATTC	.	62	24	45	0	.	0	0	0	0	0	5
LARP4	113251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50867901	50867901	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LARP4-91	NM_052879	exon15	c.C1787T	p.A596V	GTACTGCTTCACC	.	205	81	149	0	.	15	7	8	0	0	5
KRT84	3890	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52777465	52777465	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRT84-91	NM_033045	exon2	c.C664T	p.R222W	GCCTCCGCAGGTT	.	92	50	94	1	.	0	0	0	0	0	4
ESPL1	9700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53673526	53673526	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ESPL1-228	NM_012291	exon12	c.C2375T	p.A792V	TGCAGGCTCTGGA	.	71	28	37	0	.	0	0	0	0	0	5
OR9K2	441639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55523992	55523992	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR9K2-69	NM_001005243	exon1	c.G440A	p.R147H	ATGACCGCTTTAT	.	86	32	108	0	.	0	0	0	0	0	5
SUOX	6821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56397807	56397807	+	Missense_Mutation	SNP	C	C	T	rs76442086	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SUOX-90	NM_000456	exon6	c.C634T	p.P212S	CCCAACCCTATCT	.	241	94	209	0	.	26	14	12	0	0	5
ANKRD52	283373	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	12	56638934	56638934	+	Silent	SNP	C	C	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD52-70	NM_173595	exon22	c.G2445C	p.P815P	CGAAAACGGGCTG	.	197	85	146	0	.	5	5	0	0	0	3
CS	1431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56676360	56676360	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CS-226	NM_004077	exon6	c.G432C	p.R144S	AGCTGCCCTCTTT	.	249	93	205	0	.	347	187	160	0	0	5
BAZ2A	11176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56994876	56994876	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BAZ2A-22	NM_013449	exon22	c.G4307A	p.C1436Y	CCTGAGCACATCT	.	213	99	159	0	.	0	0	0	0	0	5
NACA	4666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57113354	57113354	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NACA-254	NM_001113203	exon4	c.G1831A	p.D611N	CAGGGTCAGCACT	.	60	32	48	0	.	1	1	0	0	0	5
HSD17B6	8630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57167811	57167811	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HSD17B6-92	NM_003725	exon2	c.G175A	p.A59T	CTGGCTGCGTGTC	.	220	102	165	0	.	0	0	0	0	0	5
ZBTB39	9880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57397418	57397418	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZBTB39-135	NM_014830	exon2	c.C1284T	p.I428I	GACAATGATGTTG	.	94	47	72	0	.	2	2	0	0	0	5
STAT6	6778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57493582	57493582	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STAT6-849	NM_001178079	exon15	c.T1712C	p.I571T	ATGGTGATGCCCC	.	279	136	191	0	.	135	64	71	0	0	5
LRP1	4035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57560791	57560791	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRP1-596	NM_002332	exon18	c.A2876G	p.D959G	TGGATGACGACTG	.	163	72	102	1	.	12	4	8	0	0	4
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57579466	57579466	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRP1-596	NM_002332	exon41	c.C6616T	p.R2206C	TCAGAGCGCACCA	.	137	70	50	0	.	23	13	10	0	0	5
USP15	9958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	62783220	62783220	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP15-1084	NM_001252078	exon12	c.G1483A	p.V495I	AAAGTGGTTGTCC	.	32	15	30	0	.	1	0	1	0	0	5
AVPR1A	552	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	63544037	63544037	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AVPR1A-946	NM_000706	exon1	c.G580A	p.V194M	TGTTCACCTCGAT	.	249	109	169	2	.	2	2	0	0	0	3
WIF1	11197	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	65471560	65471560	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WIF1-1110	NM_007191	exon3	c.C363T	p.V121V	CAGAGGGACATTG	.	174	73	151	1	.	0	0	0	0	0	4
GRIP1	23426	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	66788074	66788074	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRIP1-494	NM_001178074	exon16	c.1887delG	p.G629fs	AAGGGGCCCCCCG	.	74	29	62	0	.	0	0	0	0	0	3
CAND1	55832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	67696266	67696266	+	Silent	SNP	G	G	A	rs144692083	unknown;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CAND1-516	NM_018448	exon8	c.G1164A	p.E388E	TGAAGAGAATGTA	.	136	60	137	0	G|1.000;C|0.000	74	41	33	0	0	5
DYRK2	8445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	68051174	68051174	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DYRK2-861	NM_006482	exon3	c.T487A	p.Y163N	AAGCAATACATGC	.	82	40	63	0	.	15	7	8	0	0	5
FRS2	10818	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	69968573	69968573	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FRS2-658	NM_001042555	exon10	c.G1365A	p.T455T	AAAAACGCCTACA	.	180	71	146	1	.	28	9	18	1	0	4
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	78334110	78334110	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NAV3-279	NM_014903	exon2	c.C255G	p.D85E	CACTGACTGGGCC	.	118	56	87	0	.	0	0	0	0	0	5
OTOGL	283310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	80658922	80658922	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_173591	exon19	c.C2129T	p.A710V	CTCTTGCCCACTA	.	122	48	95	0	.	0	0	0	0	0	5
OTOGL	283310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	80665446	80665446	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_173591	exon23	c.G2510A	p.G837E	CAGAGGGAAAAGA	.	179	83	141	0	.	0	0	0	0	0	5
METTL25	84190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	82780603	82780603	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_032230	exon2	c.T281C	p.I94T	CCAAAATATTTTG	.	41	14	21	0	.	7	5	2	0	0	5
NUDT4	11163	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	93793069	93793069	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NUDT4-90	NM_199040	exon5	c.A460T	p.N154Y	AATGGAAATTCTA	.	313	38	230	0	.	90	90	0	0	0	3
CCDC41	51134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	94725525	94725525	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC41-90	NM_016122	exon14	c.A1658G	p.Y553C	TGATTGTACTTTT	.	84	26	71	0	.	7	3	4	0	0	5
APAF1	317	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	99061321	99061321	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	APAF1-229	NM_181868	exon10	c.C1393T	p.Q465X	CAGTTTCAGAGAT	.	88	45	71	1	.	2	2	0	0	0	3
CHST11	50515	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	105150884	105150884	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHST11-90	NM_018413	exon3	c.G362A	p.C121Y	TCTACTGCTACGT	.	255	103	176	1	.	37	17	19	0	1	3
UBE3B	89910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109959270	109959270	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBE3B-660	NM_130466	exon21	c.T2278C	p.Y760H	AGGCTGTACCCCT	.	133	64	145	0	.	32	14	18	0	0	5
MMAB	326625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109998890	109998890	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MMAB-90	NM_052845	exon7	c.C539T	p.S180L	AGCGCCGAGCTGA	.	117	57	92	0	.	39	24	15	0	0	5
TRPV4	59341	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	110221440	110221440	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPV4-94	NM_021625	exon16	c.G2602A	p.D868N	GGGCGTCATCAGT	.	77	7	70	0	.	1	1	0	0	0	3
ACAD10	80724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112171864	112171864	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACAD10-92	NM_001136538	exon12	c.T1625C	p.V542A	TTCCCGTGCTGAG	.	98	36	69	0	.	0	0	0	0	0	5
SRRM4	84530	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	119554810	119554810	+	Missense_Mutation	SNP	G	G	A	rs189389386	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SRRM4-2	NM_194286	exon4	c.G434A	p.R145H	AGCGACGCAGGTA	.	54	26	41	1	G|0.999;A|0.001	0	0	0	0	0	3
KDM2B	84678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	121868110	121868110	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KDM2B-638	NM_032590	exon23	c.T3992C	p.L1331P	TGCAGGAGTTTTT	.	57	27	55	0	.	26	9	17	0	0	5
SETD1B	23067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122248666	122248666	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SETD1B-86	NM_015048	exon5	c.G1815A	p.G605G	TGCTGGGCTTCTG	.	157	76	106	0	.	4	3	1	0	0	5
VPS33A	65082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	122717402	122717402	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VPS33A-91	NM_022916	exon12	c.C1554T	p.L518L	CCCTGGGAGGATG	.	161	80	126	0	.	62	30	32	0	0	4
ZCCHC8	55596	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	122958256	122958256	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZCCHC8-90	NM_017612	exon14	c.G1912A	p.G638R	TGCCCCCATTGCT	.	104	42	108	1	.	9	6	3	0	0	3
MPHOSPH9	10198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123679054	123679054	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MPHOSPH9-514	NM_022782	exon9	c.A1664G	p.D555G	GTATTGTCTTTTT	.	84	33	82	0	.	8	2	6	0	0	5
DNAH10	196385	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	124409717	124409717	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH10-95	NM_207437	exon67	c.G11533A	p.V3845M	CGGGCCGTGACTG	.	382	164	284	2	.	1	1	0	0	0	3
AACS	65985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	125550233	125550233	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AACS-92	NM_023928	exon1	c.G103C	p.A35P	CGGGCGGCTGTGG	.	145	44	68	0	.	18	9	9	0	0	4
ULK1	8408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	132401137	132401137	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ULK1-758	NM_003565	exon20	c.2072+1G>T	.	TGGCCGGTGAGTT	.	19	10	10	0	.	2	0	2	0	0	4
FLT1	2321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	28883025	28883025	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FLT1-1406	NM_002019	exon28	c.C3675T	p.I1225I	GGTTTTGATTCTT	.	72	53	100	0	.	27	27	0	0	0	5
PDS5B	23047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	33338706	33338706	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDS5B-94	NM_015032	exon31	c.A3598C	p.K1200Q	AGTGACAAGAGAG	.	45	34	118	0	.	9	0	9	0	0	5
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39262894	39262894	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FREM2-100	NM_207361	exon1	c.C1413T	p.S471S	CATCAGCGATGAG	.	69	62	82	0	.	0	0	0	0	0	5
MLNR	2862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	49796459	49796459	+	Silent	SNP	A	A	T	rs202143577	unknown;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLNR-90	NM_001507	exon2	c.A1185T	p.G395G	CACTGGAGGAGAC	.	44	38	74	0	.	0	0	0	0	0	5
MYCBP2	23077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	77780870	77780870	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYCBP2-236	NM_015057	exon24	c.T3507C	p.C1169C	GATACTACATCTG	.	94	72	87	0	.	3	0	3	0	0	5
FARP1	10160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	99083455	99083455	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FARP1-290	NM_005766	exon18	c.G2064A	p.R688R	GCACCGGCTCATG	.	147	105	187	0	.	163	5	158	0	0	5
FARP1	10160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	99100570	99100570	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FARP1-290	NM_005766	exon27	c.G3137C	p.X1046S	TGTATTGATGGCC	.	148	115	208	0	.	173	6	167	0	0	5
TPP2	7174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103288650	103288650	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TPP2-92	NM_003291	exon13	c.A1586G	p.N529S	TTGGAAATAACCG	.	95	76	176	0	.	3	0	3	0	0	5
CCDC168	643677	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103399586	103399586	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001146197	exon4	c.A3461G	p.Y1154C	CTGCTATACATTC	.	29	24	46	0	.	0	0	0	0	0	4
CDC16	8881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	115030673	115030673	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDC16-226	NM_003903	exon17	c.C1561T	p.H521Y	CTTGGTCATTGCA	.	98	78	151	1	.	22	0	22	0	0	5
POTEG	404785	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	19573146	19573146	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POTEG-1	NM_001005356	exon8	c.1242+2T>C	.	GAAAGGTATACTT	.	1895	270	1480	1	.	0	0	0	0	0	3
OR4K2	390431	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20345046	20345046	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4K2-72	NM_001005501	exon1	c.C620T	p.A207V	TAATTGCGTTGTC	.	163	47	138	1	.	0	0	0	0	0	4
OR4K15	81127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20444355	20444355	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4K15-69	NM_001005486	exon1	c.T678A	p.D226E	TGCAGATAGTGGC	.	126	60	122	0	.	0	0	0	0	0	5
OR11G2	390439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20666484	20666484	+	Silent	SNP	T	T	C	rs200553632	unknown;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR11G2-70	NM_001005503	exon1	c.T990C	p.L330L	TAGTCTTAGGAAC	.	75	38	49	0	T|0.999;G|0.000	0	0	0	0	0	5
APEX1	328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20924074	20924074	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	APEX1-661	NM_080648	exon3	c.G60A	p.E20E	TATAGAGCCAGAG	.	26	12	18	0	.	0	0	0	0	0	5
OR6S1	341799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21109455	21109455	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR6S1-70	NM_001001968	exon1	c.G396A	p.L132L	GTAGCGCAGAGGA	.	258	106	199	0	.	0	0	0	0	0	5
HAUS4	54930	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	23415765	23415765	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HAUS4-91	NM_001166269	exon10	c.C1061T	p.A354V	TGGAGGGCCCACC	.	120	51	91	0	.	13	11	2	0	0	4
PSMB5	5693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23504062	23504062	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PSMB5-91	NM_001144932	exon1	c.C29T	p.P10L	GGTAGCGGTCTCT	.	82	45	80	0	.	509	282	227	0	0	5
BCL2L2-PABPN1	100529063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23777326	23777326	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001199864	exon3	c.C350T	p.P117L	TGGAACCACTGGT	.	96	37	91	0	.	42	27	15	0	0	5
SLC22A17	51310	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23821014	23821014	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC22A17-226	NM_016609	exon3	c.C318T	p.L106L	GATGAAGAGGATC	.	240	93	198	2	.	5	5	0	0	0	4
IL25	64806	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23844931	23844931	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IL25-91	NM_022789	exon2	c.C376T	p.P126S	ATGGACCCCCGGG	.	197	84	162	1	.	0	0	0	0	0	4
MYH6	4624	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23865566	23865566	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYH6-94	NM_002471	exon20	c.A2356G	p.I786V	TGATGATGCGGCT	.	73	34	67	1	.	0	0	0	0	0	4
MYH6	4624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23872558	23872558	+	Silent	SNP	C	C	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYH6-94	NM_002471	exon10	c.G897C	p.L299L	TTCACCCAGCAAC	.	101	44	86	0	.	0	0	0	0	0	5
MYH7	4625	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23894924	23894924	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYH7-94	NM_000257	exon20	c.T2266A	p.Y756N	ACTTGTACTGGTT	.	159	61	106	1	.	0	0	0	0	0	4
TGM1	7051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24718579	24718579	+	Silent	SNP	G	G	A	rs201811993	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TGM1-91	NM_000359	exon15	c.C2394T	p.D798D	TCCAGCGTCTGAG	.	104	54	63	0	G|0.999;A|0.000	4	2	2	0	0	5
ADCY4	196883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24801000	24801000	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADCY4-93	NM_001198592	exon5	c.G663A	p.K221K	CTGGTGCTTCTTC	.	118	44	64	0	.	0	0	0	0	0	5
PPP2R3C	55012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	35585883	35585883	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPP2R3C-227	NM_017917	exon2	c.C119G	p.S40C	CATTCGGAGTAAT	.	41	9	26	0	.	16	9	7	0	0	4
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45644600	45644600	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FANCM-569	NM_020937	exon14	c.C2643T	p.D881D	TAATGACAGAAAT	.	37	13	40	0	.	2	2	0	0	0	5
FANCM	57697	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	45654431	45654431	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FANCM-569	NM_020937	exon18	c.G4527A	p.R1509R	AGCTAGGAAGTTT	.	221	92	229	2	.	0	0	0	0	0	3
FRMD6	122786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	52182163	52182163	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FRMD6-524	NM_001267046	exon10	c.T970C	p.Y324H	CGCCTCTATATGA	.	88	41	79	0	.	1	0	1	0	0	5
KTN1	3895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	56103915	56103915	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KTN1-1147	NM_001079521	exon11	c.1550-1G>A	.	ATTACAGATTTAC	.	202	79	169	0	.	0	0	0	0	0	4
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64644145	64644145	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SYNE2-164	NM_182914	exon96	c.G17500A	p.E5834K	CAAAGTGAAGATC	.	209	91	180	0	.	18	12	6	0	0	5
HSPA2	3306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65009141	65009141	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HSPA2-226	NM_021979	exon1	c.C1574T	p.A525V	AGGAGGCGGAGCG	.	151	61	125	0	.	40	22	18	0	0	5
SPTB	6710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65249147	65249147	+	Nonsense_Mutation	SNP	G	G	T	rs200559187	unknown;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPTB-100	NM_000347	exon19	c.C4127A	p.S1376X	GCAGCCGAGAGGT	.	148	77	74	0	G|0.999;A|0.000	0	0	0	0	0	5
SPTB	6710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65263322	65263322	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPTB-100	NM_000347	exon10	c.G1294A	p.A432T	TCATTGCGGCCTT	.	100	43	73	0	.	0	0	0	0	0	5
MPP5	64398	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	67768822	67768822	+	Missense_Mutation	SNP	G	G	A	rs75595607	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MPP5-91	NM_022474	exon6	c.G788A	p.R263H	AGGCTCGTGATAT	.	122	58	100	1	G|0.999;A|0.001	0	0	0	0	0	4
ADAM21	8747	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	70926261	70926261	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAM21-92	NM_003813	exon2	c.2045delT	p.V682fs	GAGGAGTTTTTTT	.	371	148	238	0	.	0	0	0	0	0	3
PCNX	22990	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	71492916	71492916	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCNX-91	NM_014982	exon14	c.G3266A	p.S1089N	ATGGTAGCAGAAA	.	122	43	88	1	.	35	11	24	0	0	4
ACOT4	122970	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74061813	74061813	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACOT4-90	NM_152331	exon3	c.A721C	p.M241L	CTCTCAATGGCCT	.	143	58	123	1	.	3	1	2	0	0	4
TMED10	10972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75643179	75643179	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMED10-90	NM_006827	exon1	c.A104G	p.H35R	GGCAGATGGAAGG	.	417	139	296	0	.	322	157	165	0	0	5
DIO2	1734	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	80677760	80677760	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DIO2-22	NM_001242503	exon1	c.56delT	p.F19fs	TTGGAGAAAAAAA	.	92	15	65	0	.	0	0	0	0	0	3
TSHR	7253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	81557476	81557476	+	Silent	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TSHR-1650	NM_000369	exon5	c.A456T	p.I152I	TGATATATTCTTT	.	34	18	48	0	.	0	0	0	0	0	5
FLRT2	23768	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	86089453	86089453	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FLRT2-94	NM_013231	exon2	c.C1595T	p.T532M	AGCAGACGACGTC	.	184	79	165	1	.	3	1	2	0	0	3
SMEK1	55671	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	91927933	91927933	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMEK1-226	NM_032560	exon15	c.2144delA	p.K715fs	ACTTCCTTTTCCT	.	102	38	92	0	.	0	0	0	0	0	3
SLC24A4	123041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92792243	92792243	+	Silent	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC24A4-93	NM_153646	exon2	c.C162A	p.V54V	ACGTGTCCTGCCA	.	98	41	96	0	.	0	0	0	0	0	5
SLC24A4	123041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92909757	92909757	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC24A4-93	NM_153646	exon7	c.C596T	p.T199M	GTCTGACGTGGTG	.	148	64	110	0	.	0	0	0	0	0	5
GOLGA5	9950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	93277940	93277940	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GOLGA5-677	NM_005113	exon6	c.G1161A	p.Q387Q	ACGTCAGAATTTA	.	364	145	314	1	.	69	37	32	0	0	4
UNC79	57578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	93954014	93954014	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_020818	exon5	c.T94C	p.S32P	GTGGGCTCCTCAA	.	81	30	72	0	.	0	0	0	0	0	5
SERPINA6	866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	94772527	94772527	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SERPINA6-653	NM_001756	exon4	c.A913G	p.T305A	AGATGGTGACCTT	.	132	69	102	0	.	0	0	0	0	0	5
SERPINA3	12	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95088767	95088767	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SERPINA3-653	NM_001085	exon4	c.C1007T	p.A336V	AGGAAGCCTTCAC	.	128	52	90	0	.	41	24	17	0	0	5
SYNE3	161176	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95932517	95932517	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_152592	exon3	c.C378T	p.Y126Y	CCAGCGGTAGAAC	.	79	36	66	1	.	1	1	0	0	0	4
PAPOLA	10914	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	97027050	97027050	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAPOLA-68	NM_032632	exon20	c.2067+2T>C	.	CAAAGGTATACTA	.	140	51	156	1	.	1	0	1	0	0	3
BCL11B	64919	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	99641025	99641025	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BCL11B-1147	NM_138576	exon4	c.G2148A	p.A716A	CGACGCCGCGTAG	.	119	48	29	0	.	0	0	0	0	0	4
BCL11B	64919	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	99697775	99697775	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BCL11B-1147	NM_138576	exon3	c.547delC	p.L183fs	ACGGCAGGGGGAG	.	185	57	38	0	.	0	0	0	0	0	3
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102476260	102476260	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DYNC1H1-98	NM_001376	exon30	c.C6058T	p.P2020S	ATGAACCCTGGCT	.	166	75	146	0	.	63	39	24	0	0	5
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	102516785	102516785	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DYNC1H1-98	NM_001376	exon78	c.T13826A	p.V4609D	TACCTGTCTACCT	.	138	65	115	0	.	2	0	2	0	0	4
ZNF839	55778	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	102807679	102807680	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF839-91	NM_018335	exon8	c.1947_1948del	p.649_650del	AGTAAATGTGACT	.	273	86	190	0	.	0	0	0	0	0	3
CINP	51550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102816363	102816363	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CINP-178	NM_001177611	exon4	c.A374T	p.E125V	AGCTTTTCCATTT	.	109	54	88	0	.	89	47	42	0	0	5
TECPR2	9895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102931570	102931570	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TECPR2-92	NM_001172631	exon17	c.C3733T	p.P1245S	ACTCAGCCTCTCA	.	179	79	142	0	.	14	7	7	0	0	5
TRMT61A	115708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	103999082	103999082	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRMT61A-90	NM_152307	exon3	c.C495T	p.C165C	CGTGTGCCGCAGT	.	256	124	96	0	.	5	4	1	0	0	5
PPP1R13B	23368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104206356	104206356	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPP1R13B-227	NM_015316	exon12	c.C2397T	p.P799P	TGGTTCGGGGGAA	.	70	23	42	0	.	14	9	5	0	0	5
INF2	64423	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	105172438	105172438	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	INF2-492	NM_022489	exon6	c.768delG	p.E256fs	GGACGAGGAGGAG	.	262	116	159	0	.	0	0	0	0	0	3
CEP170B	283638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105350368	105350368	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001112726	exon9	c.C1252T	p.R418C	AAGAAGCGCTCCC	.	164	65	89	0	.	0	0	0	0	0	5
CEP170B	283638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105352726	105352726	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001112726	exon12	c.G2150A	p.S717N	CAGAGAGCAGCAG	.	185	72	56	0	.	24	14	10	0	0	5
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105416057	105416057	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AHNAK2-47	NM_138420	exon7	c.A5731G	p.M1911V	TGGGCATATCCAC	.	270	116	190	0	.	0	0	0	0	0	5
TMEM121	80757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105995324	105995324	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM121-90	NM_025268	exon2	c.C153T	p.C51C	CGTGTGCTTCCTG	.	157	65	32	0	.	3	2	1	0	0	5
OR4M2	390538	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	22369302	22369302	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4M2-69	NM_001004719	exon1	c.T727C	p.Y243H	ACCTGCTATTCCC	.	488	72	430	0	.	0	0	0	0	0	4
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28377252	28377252	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HERC2-234	NM_004667	exon81	c.T12564C	p.P4188P	CTTCATAGGCACT	.	257	114	252	0	.	0	0	0	0	0	5
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28408358	28408358	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HERC2-234	NM_004667	exon69	c.C10628T	p.A3543V	TCATCCGCAATCA	.	73	34	57	0	.	11	5	6	0	0	5
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28443647	28443647	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HERC2-234	NM_004667	exon50	c.T7888C	p.Y2630H	GAGGATAGCCTAC	.	127	55	106	0	.	0	0	0	0	0	5
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28473416	28473416	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HERC2-234	NM_004667	exon35	c.T5412C	p.L1804L	GAGCAGAAGGTCG	.	62	28	45	0	.	2	1	1	0	0	5
APBA2	321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	29409295	29409295	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	APBA2-90	NM_005503	exon14	c.T2209C	p.F737L	GCCATGTTCAGGC	.	253	117	151	0	.	14	6	8	0	0	5
CASC5	57082	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40914476	40914476	+	Missense_Mutation	SNP	A	A	G	rs73394756	byfrequency;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CASC5-660	NM_170589	exon11	c.A2092G	p.I698V	CATAATATAGTCT	.	67	32	49	0	A|0.994;C|0.006	5	2	3	0	0	4
MGA	23269	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42059314	42059314	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MGA-522	NM_001164273	exon24	c.C9034T	p.P3012S	GTGATGCCTTGTT	.	196	87	174	1	.	12	5	7	0	0	3
SPTBN5	51332	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42149686	42149686	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPTBN5-91	NM_016642	exon51	c.C8266T	p.R2756C	GCAGACGCAGGGC	.	117	62	104	1	.	0	0	0	0	0	3
SPG11	80208	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	44918706	44918706	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPG11-95	NM_025137	exon12	c.2068-1G>A	.	AACTTCCTAGGAA	.	46	22	35	0	.	0	0	0	0	0	4
SEMA6D	80031	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48054484	48054484	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEMA6D-138	NM_153617	exon8	c.G626A	p.R209H	CCCTTCGCACAAT	.	83	23	85	1	.	0	0	0	0	0	4
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48764789	48764789	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBN1-92	NM_000138	exon35	c.A4295G	p.D1432G	CCCATGTCGCATT	.	137	51	112	0	.	25	21	4	0	0	5
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48788314	48788314	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBN1-92	NM_000138	exon20	c.A2402T	p.D801V	TTTAGATCAGGTT	.	214	92	220	0	.	9	6	3	0	0	5
DTWD1	56986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49926737	49926737	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DTWD1-226	NM_001144955	exon4	c.C413T	p.A138V	AGGTTGCACTCAT	.	131	49	114	0	.	0	0	0	0	0	5
SPPL2A	84888	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	51014348	51014350	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AAG	AAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPPL2A-90	NM_032802	exon13	c.1298_1300del	p.433_434del	ATATGTAAGAAGA	.	29	14	28	0	.	0	0	0	0	0	3
CYP19A1	1588	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	51514616	51514616	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CYP19A1-93	NM_031226	exon6	c.C558T	p.D186D	CAACACGTCCACA	.	383	206	327	2	.	9	6	3	0	0	3
PRTG	283659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	56032850	56032850	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRTG-92	NM_173814	exon2	c.A127T	p.K43X	GTTCTTTTACAAA	.	76	39	52	0	.	0	0	0	0	0	5
RORA	6095	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	60803784	60803785	+	Frame_Shift_Del	DEL	TC	TC	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RORA-290	NM_134260	exon6	c.559_560del	p.187_187del	AAGCTGTCTCTCT	.	191	75	132	0	.	0	0	0	0	0	3
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63097938	63097938	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TLN2-573	NM_015059	exon48	c.C6617T	p.A2206V	CTACTGCCAACCT	.	178	90	162	0	.	6	4	2	0	0	5
FBXL22	283807	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	63893575	63893575	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXL22-90	NM_203373	exon2	c.C434T	p.S145L	CGAAATCACCTCG	.	51	26	27	0	.	0	0	0	0	0	4
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63916523	63916523	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HERC1-666	NM_003922	exon72	c.A13279G	p.S4427G	ATGTGCTGTTCTG	.	116	44	105	0	.	1	1	0	0	0	5
CILP	8483	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	65489585	65489585	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CILP-97	NM_003613	exon9	c.G3039A	p.M1013I	ATAGAGCATCCCA	.	212	94	182	1	.	2	2	0	0	0	3
CILP	8483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65489631	65489631	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CILP-97	NM_003613	exon9	c.A2993C	p.Q998P	TTGGGCTGGTCCC	.	186	71	139	0	.	1	1	0	0	0	5
NOX5	79400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69331288	69331288	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOX5-136	NM_024505	exon9	c.A1463G	p.E488G	GCTATGAGTGGCA	.	163	80	119	0	.	0	0	0	0	0	5
BBS4	585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	73029922	73029922	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BBS4-90	NM_033028	exon16	c.G1554C	p.E518D	AAGAGAGAAATAA	.	59	24	50	0	.	20	9	11	0	0	5
STRA6	64220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74487774	74487774	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STRA6-90	NM_001199042	exon7	c.G583A	p.A195T	AGAGGGCAGCATA	.	101	35	79	0	.	6	6	0	0	0	5
C15orf39	56905	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	75498952	75498952	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C15orf39-90	NM_015492	exon2	c.G563A	p.G188D	TGGATGGCACCTT	.	65	7	51	0	.	72	68	4	0	0	3
CSPG4	1464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75979767	75979767	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSPG4-229	NM_001897	exon3	c.C3639T	p.F1213F	CACGGAGAAGGCC	.	234	109	130	0	.	0	0	0	0	0	5
PSMA4	5685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	78838004	78838004	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PSMA4-90	NM_001102667	exon7	c.G405A	p.L135L	ATTGCTGTACATT	.	124	57	105	0	.	230	108	122	0	0	5
TMC3	342125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81660598	81660598	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMC3-70	NM_001080532	exon3	c.C308T	p.A103V	ACCTCTGCACCTG	.	97	35	88	0	.	0	0	0	0	0	5
EFTUD1	79631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	82512116	82512116	+	Silent	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EFTUD1-91	NM_024580	exon14	c.C1488A	p.L496L	TTCCTGGAGCACA	.	130	49	102	0	.	20	13	7	0	0	5
ALPK3	57538	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	85401392	85401392	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALPK3-337	NM_020778	exon6	c.G4029A	p.E1343E	AGAGGAGAAGTTC	.	110	47	81	1	.	1	0	1	0	0	4
AGBL1	123624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86810268	86810268	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_152336	exon12	c.T1661C	p.F554S	CCAAATTTGAGTC	.	112	45	115	0	.	0	0	0	0	0	5
POLG	5428	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	89864046	89864046	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POLG-228	NM_002693	exon18	c.G2932A	p.A978T	CAGCTGCCTCCTG	.	114	40	64	1	.	56	29	27	0	0	4
C15orf38-AP3S2	100526783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	90378789	90378789	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001199058	exon10	c.C1143T	p.G381G	GAGATCGCCAATG	.	106	46	90	0	.	101	50	51	0	0	5
RCCD1	91433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91504901	91504901	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RCCD1-90	NM_001017919	exon8	c.C1033T	p.R345C	CCTCGCCGTGTGG	.	316	146	201	0	.	15	11	4	0	0	5
MCTP2	55784	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	95013607	95013607	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MCTP2-93	NM_018349	exon20	c.G2406T	p.L802F	CTGTTTGATTCTG	.	69	29	54	0	.	0	0	0	0	0	4
ARRDC4	91947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	98511297	98511297	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARRDC4-90	NM_183376	exon4	c.T576C	p.S192S	CACTTCTGGTCCA	.	50	15	37	0	.	5	3	2	0	0	5
IGF1R	3480	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	99250942	99250942	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGF1R-1490	NM_000875	exon2	c.C246T	p.T82T	CATTACCGAGTAC	.	360	150	256	2	.	23	14	9	0	0	3
ADAMTS17	170691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	100514681	100514681	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS17-228	NM_139057	exon22	c.T3214A	p.W1072R	GGTACCACCGCAT	.	185	82	132	0	.	0	0	0	0	0	5
ADAMTS17	170691	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	100533255	100533255	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS17-228	NM_139057	exon20	c.A2947G	p.T983A	TCACCGTAGACCA	.	97	48	93	2	.	0	0	0	0	0	4
TM2D3	80213	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	102192528	102192528	+	Missense_Mutation	SNP	C	C	T	rs149437101	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TM2D3-91	NM_025141	exon1	c.G37A	p.A13T	ACAAGGCGCGGAG	.	135	44	53	1	A|0.000;C|1.000	39	39	0	0	0	3
OR4F15	390649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	102358817	102358817	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR4F15-68	NM_001001674	exon1	c.A428G	p.Y143C	GTCTATACTTTTT	.	264	130	206	0	.	0	0	0	0	0	5
CHTF18	63922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	840346	840346	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHTF18-227	NM_022092	exon6	c.700-1G>A	.	TGCACAGCGGCGG	.	76	30	44	0	.	2	0	2	0	0	4
CRAMP1L	57585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1682360	1682360	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_020825	exon3	c.G688C	p.D230H	GACTTTGATCATG	.	123	53	71	0	.	0	0	0	0	0	5
MAPK8IP3	23162	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1793368	1793368	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAPK8IP3-1109	NM_015133	exon5	c.C635A	p.P212H	TGTTCCCCCTGGC	.	76	21	56	1	.	12	10	2	0	0	4
MAPK8IP3	23162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1814309	1814309	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAPK8IP3-1109	NM_015133	exon19	c.G2126T	p.C709F	TGTGGTGTGCCGC	.	194	83	38	0	.	0	0	0	0	0	5
RPS2	6187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2013252	2013252	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RPS2-90	NM_002952	exon4	c.A273G	p.S91S	GATCTCTGATTCC	.	147	56	135	0	.	10	8	2	0	0	5
ZNF598	90850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2052607	2052607	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF598-432	NM_178167	exon6	c.G592A	p.D198N	CATTGTCCAGGTA	.	205	73	154	0	.	17	6	11	0	0	5
ZNF598	90850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2053060	2053060	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF598-432	NM_178167	exon5	c.G397A	p.D133N	CCAGGTCCCCGAA	.	161	52	80	0	.	48	31	16	1	0	5
ABCA3	21	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2374440	2374440	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCA3-1015	NM_001089	exon6	c.C412A	p.P138T	TGAAGGGGTGCTC	.	71	34	42	0	.	31	14	17	0	0	5
CCNF	899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2487128	2487128	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCNF-658	NM_001761	exon5	c.347-2A>T	.	CCCCGCAGTGTCT	.	65	26	46	0	.	9	0	9	0	0	4
CCNF	899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2487231	2487231	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCNF-658	NM_001761	exon5	c.T448C	p.W150R	TTCATCTGGCTCT	.	73	30	60	0	.	5	1	4	0	0	5
ATP6V0C	527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	2564109	2564109	+	Missense_Mutation	SNP	C	C	G	rs147497038	unknown;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP6V0C-91	NM_001198569	exon2	c.C5G	p.S2C	ACATGTCCGAGTC	.	78	44	38	0	C|1.000;T|0.000	349	187	162	0	0	4
CEMP1	752014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2580891	2580891	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CEMP1-23	NM_001048212	exon1	c.G184A	p.A62T	CCTCTGCCTTGAC	.	109	49	108	0	.	5	4	1	0	0	5
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2816678	2816678	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SRRM2-93	NM_016333	exon11	c.T6149A	p.I2050N	TTGCTATCCGCCG	.	233	98	183	0	.	210	100	109	1	0	5
CLDN9	9080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3063682	3063682	+	Missense_Mutation	SNP	T	T	C	rs199692917	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLDN9-90	NM_020982	exon1	c.T319C	p.C107R	ACCACGTGTGTGG	.	238	75	206	0	T|0.999;C|0.001	0	0	0	0	0	5
CLDN9	9080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3063792	3063792	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLDN9-90	NM_020982	exon1	c.C429T	p.I143I	CGCCATCATCCAG	.	179	66	162	0	.	0	0	0	0	0	5
C16orf90	646174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3545393	3545393	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001080524	exon1	c.A29G	p.E10G	TGCAGCTCAGAAA	.	92	34	71	0	.	0	0	0	0	0	5
USP7	7874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	9004639	9004639	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP7-661	NM_003470	exon11	c.G1124C	p.G375A	TTGTCCCCATCGA	.	68	32	78	0	.	37	18	19	0	0	5
USP7	7874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	9004658	9004658	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP7-661	NM_003470	exon11	c.G1105A	p.A369T	CTACTGCCACATA	.	64	25	74	0	.	36	13	23	0	0	5
CLEC16A	23274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	11272519	11272519	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLEC16A-92	NM_015226	exon23	c.C3134T	p.A1045V	CATGTGCTGAGCC	.	28	13	14	0	.	25	15	10	0	0	4
NTAN1	123803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	15131997	15131997	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NTAN1-90	NM_173474	exon10	c.T824A	p.L275X	TTTTTTAAAAACA	.	121	41	101	0	.	47	27	20	0	0	5
KIAA0430	9665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	15725252	15725252	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA0430-90	NM_014647	exon6	c.T1337C	p.V446A	AGAACCACTGTGG	.	138	64	96	0	.	0	0	0	0	0	5
TMC7	79905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19051758	19051758	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMC7-93	NM_024847	exon9	c.A1327C	p.T443P	CGTCTGACAATCC	.	45	20	39	0	.	0	0	0	0	0	5
PDILT	204474	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	20376740	20376740	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDILT-153	NM_174924	exon10	c.1237+2T>A	.	ATACTTACAGAAC	.	98	44	74	0	.	0	0	0	0	0	3
PDILT	204474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	20396090	20396090	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDILT-153	NM_174924	exon3	c.A286T	p.I96F	AGCCGATCCCATT	.	120	45	87	0	.	0	0	0	0	0	5
VWA3A	146177	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	22135022	22135022	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VWA3A-1	NM_173615	exon16	c.1526delA	p.E509fs	TCTGTGAAAAAAG	.	118	36	85	0	.	0	0	0	0	0	3
COG7	91949	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	23424846	23424846	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COG7-90	NM_153603	exon10	c.A1332G	p.R444R	CTTCTTTCGTATG	.	210	93	165	2	.	53	18	35	0	0	3
GGA2	23062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23481455	23481455	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GGA2-91	NM_015044	exon15	c.G1482A	p.R494R	TCCATTCCGGTCA	.	94	36	83	0	.	81	35	46	0	0	5
EARS2	124454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23555852	23555852	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EARS2-90	NM_001083614	exon3	c.G468A	p.R156R	GTGGTTCCGCAAG	.	25	10	22	0	.	23	10	13	0	0	5
EARS2	124454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23555917	23555917	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EARS2-90	NM_001083614	exon3	c.G403A	p.G135R	CAGCTCCGGTCTT	.	46	25	36	0	.	31	24	7	0	0	5
ERN2	10595	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	23706207	23706207	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ERN2-322	NM_033266	exon17	c.C2086T	p.P696S	TGTCAGGCCCGGT	.	112	55	103	1	.	0	0	0	0	0	3
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27549248	27549248	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GTF3C1-94	NM_001520	exon4	c.G609T	p.K203N	ATCAACCCTGGAG	.	94	53	86	0	.	0	0	0	0	0	5
KIAA0556	23247	ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27761402	27761402	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA0556-141	NM_015202	exon16	c.A3121G	p.T1041A	AACAGGACCCAGG	.	169	79	140	2	.	7	4	3	0	0	3
ATXN2L	11273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	28841942	28841942	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATXN2L-92	NM_148414	exon9	c.G1041A	p.G347G	GGAGGGGAAGTAT	.	68	38	55	0	.	0	0	0	0	0	4
ATXN2L	11273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28848085	28848085	+	Missense_Mutation	SNP	C	C	T	rs188659783	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATXN2L-92	NM_017492	exon23	c.C3176T	p.P1059L	TCCACCCCCCGGG	.	108	53	61	0	C|0.999;T|0.000	132	73	59	0	0	5
CD19	930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28943679	28943679	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CD19-92	NM_001178098	exon2	c.C101T	p.A34V	ATAACGCTGTGCT	.	92	48	58	0	.	0	0	0	0	0	5
PAGR1	79447	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	29827951	29827951	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_024516	exon1	c.T105A	p.D35E	GGAGGATACCGGA	.	57	23	49	1	.	46	22	24	0	0	3
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29994580	29994580	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAOK2-521	NM_004783	exon12	c.C1187T	p.A396V	CTGAAGCCCGGGA	.	45	19	49	0	.	47	24	23	0	0	5
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29994973	29994973	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAOK2-521	NM_004783	exon13	c.A1410G	p.R470R	CATCCGAACCGCC	.	57	27	55	0	.	0	0	0	0	0	5
TAOK2	9344	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30002105	30002105	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAOK2-521	NM_004783	exon18	c.C2446A	p.L816M	CCCCAGCTGCGGC	.	22	10	41	1	.	2	2	0	0	0	4
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30002194	30002194	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAOK2-521	NM_004783	exon18	c.C2535T	p.S845S	CCAGAGCAAGATC	.	71	28	71	0	.	40	22	18	0	0	5
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30002536	30002536	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAOK2-521	NM_004783	exon19	c.C2797T	p.P933S	GGCTATCCTGCTC	.	160	61	94	0	.	46	20	26	0	0	5
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	30002651	30002651	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAOK2-521	NM_004783	exon19	c.C2912T	p.S971F	AGCCGTCTCTGCT	.	102	45	45	0	.	39	17	22	0	0	4
TBC1D10B	26000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30369775	30369775	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_015527	exon9	c.C1917T	p.S639S	GGCCCGGGACCCA	.	94	45	45	0	.	56	27	29	0	0	5
ZNF785	146540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30594019	30594019	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF785-91	NM_152458	exon3	c.G1080A	p.W360X	GTGGATCCACCGA	.	102	40	77	0	.	8	0	8	0	0	5
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30745920	30745920	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SRCAP-94	NM_006662	exon31	c.C6713T	p.T2238I	AGCAGACTCATAT	.	204	87	171	0	.	16	8	8	0	0	5
ORAI3	93129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30964661	30964661	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ORAI3-68	NM_152288	exon2	c.C384T	p.N128N	GAGCAACATCCAC	.	199	70	172	0	.	74	55	19	0	0	5
ZNF668	79759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31072498	31072498	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF668-585	NM_001172669	exon4	c.C1820G	p.A607G	TCGCTGGCACTCA	.	155	64	93	0	.	16	13	3	0	0	5
ITGAX	3687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31371245	31371245	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITGAX-229	NM_000887	exon7	c.C566T	p.S189F	AGTTTTCCCTGAT	.	81	40	65	0	.	0	0	0	0	0	5
ARMC5	79798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	31471222	31471222	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARMC5-24	NM_024742	exon1	c.G377T	p.R126L	GCCTGCGCAAGAC	.	53	24	31	0	.	2	2	0	0	0	4
PHKB	5257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	47581450	47581450	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHKB-154	NM_000293	exon7	c.T701G	p.L234R	CAGAGCTACATTC	.	66	29	59	0	.	0	0	0	0	0	5
BRD7	29117	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	50368679	50368679	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BRD7-90	NM_013263	exon7	c.A830G	p.E277G	GAGTCCTCTCTCT	.	61	25	66	1	.	74	50	24	0	0	4
NLRC5	84166	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	57060004	57060004	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRC5-159	NM_032206	exon5	c.G1149A	p.Q383Q	CGCCCAGCCATCG	.	31	27	51	1	.	4	0	4	0	0	3
NLRC5	84166	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	57060099	57060099	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRC5-159	NM_032206	exon5	c.G1244A	p.C415Y	GTCTCTGCCTCCA	.	28	20	49	1	.	4	0	4	0	0	3
NLRC5	84166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57089359	57089359	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRC5-159	NM_032206	exon26	c.G3674A	p.C1225Y	CAGGCTGCAGCCT	.	103	87	138	1	.	4	2	2	0	0	4
CNGB1	1258	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	57993956	57993956	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNGB1-137	NM_001297	exon10	c.C597T	p.R199R	CTGGGGGCGTCCT	.	9	7	14	0	.	0	0	0	0	0	3
SLC12A4	6560	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67980895	67980895	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC12A4-91	NM_001145962	exon16	c.C2192T	p.S731F	ATGACAGAACCAA	.	62	48	83	2	.	20	5	15	0	0	4
FUK	197258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70503129	70503129	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FUK-91	NM_145059	exon10	c.C858T	p.P286P	GAGGCCCCCAGAG	.	66	51	90	0	.	2	0	2	0	0	5
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	72822586	72822586	+	Frame_Shift_Del	DEL	G	G	-	rs66799632	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFHX3-72	NM_006885	exon10	c.9589delC	p.Q3197fs	GCTGCTGGGGGGG	.	111	50	53	0	.	0	0	0	0	0	3
WDR59	79726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	74922199	74922199	+	Silent	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDR59-92	NM_030581	exon22	c.G2214T	p.R738R	CCGGAGCCGGCAA	.	130	57	105	0	.	35	17	18	0	0	5
ZFP1	162239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	75200759	75200759	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFP1-92	NM_153688	exon3	c.T107G	p.V36G	TGGATGTGATGCT	.	167	56	130	0	.	12	7	5	0	0	5
ZCCHC14	23174	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	16	87445168	87445168	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZCCHC14-154	NM_015144	exon12	c.C2748A	p.H916Q	GGCGCGGTGACCA	.	117	51	131	0	.	12	12	0	0	0	3
ZCCHC14	23174	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	87445179	87445179	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZCCHC14-154	NM_015144	exon12	c.G2737T	p.A913S	CAGTGGCCCCGCA	.	131	61	140	0	.	10	10	0	0	0	4
ZC3H18	124245	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	88691141	88691141	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZC3H18-69	NM_144604	exon12	c.2030delC	p.T677fs	CCAGGACCCCCCC	.	128	54	73	0	.	0	0	0	0	0	3
PIEZO1	9780	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	88787613	88787614	+	Frame_Shift_Del	DEL	TC	TC	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001142864	exon39	c.5628_5629del	p.1876_1877del	CCTTCTTCCTTCT	.	29	10	23	0	.	0	0	0	0	0	3
GALNS	2588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	88909119	88909119	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GALNS-153	NM_000512	exon2	c.C239T	p.S80L	CATGGCGAGCACA	.	111	58	62	0	.	2	0	2	0	0	5
CPNE7	27132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89653121	89653121	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CPNE7-90	NM_014427	exon10	c.G1049A	p.R350H	AGAGACGCAGTTA	.	119	49	79	0	.	1	0	1	0	0	5
C17orf97	400566	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	260403	260405	+	In_Frame_Del	DEL	GAA	GAA	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GAA	GAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C17orf97-91	NM_001013672	exon1	c.270_272del	p.90_91del	AAAAAGGAAGAAG	.	20	15	19	0	.	0	0	0	0	0	3
SHPK	23729	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	3518689	3518689	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SHPK-69	NM_013276	exon6	c.C966T	p.N322N	GCCCCCGTTGAGT	.	156	121	215	0	.	1	1	0	0	0	4
TMEM102	284114	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7339882	7339882	+	Missense_Mutation	SNP	G	G	A	rs141257669	unknown;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM102-90	NM_178518	exon3	c.G584A	p.S195N	CGCACAGCTACGT	.	121	9	144	0	G|1.000;T|0.000	1	1	0	0	0	3
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7577018	7577018	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TP53-70225	NM_000546	exon9	c.919+1G>T	.	TGCTTACCTCGCT	.	67	58	105	0	.	7	0	7	0	0	4
GUCY2D	3000	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7919549	7919549	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GUCY2D-319	NM_000180	exon18	c.G3165C	p.W1055C	TTTCTGGCTAGTG	.	65	41	102	1	.	0	0	0	0	0	3
ALOXE3	59344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8017851	8017851	+	Nonsense_Mutation	SNP	G	G	A	rs141340759	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALOXE3-229	NM_001165960	exon6	c.C1027T	p.R343X	AGTATCGAACATT	.	159	121	275	1	.	0	0	0	0	0	5
ALOXE3	59344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8017917	8017917	+	Missense_Mutation	SNP	G	G	A	rs149284623	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALOXE3-229	NM_001165960	exon6	c.C961T	p.R321W	GGTACCGATTCCC	.	57	42	126	0	G|1.000;A|0.000	0	0	0	0	0	5
PIK3R5	23533	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	8783988	8783988	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIK3R5-1146	NM_001142633	exon19	c.C2611T	p.P871S	TGATGGGCAGGCA	.	57	44	67	0	.	0	0	0	0	0	4
MYH13	8735	ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10213064	10213064	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYH13-6	NM_003802	exon34	c.C4740T	p.V1580V	CTCAATGACCTTG	.	67	48	127	2	.	0	0	0	0	0	3
TRPV2	51393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	16336945	16336945	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPV2-91	NM_016113	exon13	c.C2047T	p.R683W	AAGCAGCGGGCAG	.	88	68	133	0	.	92	9	83	0	0	5
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18022386	18022386	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO15A-97	NM_016239	exon2	c.G272A	p.R91H	AGATGCGCATGGG	.	161	123	137	0	.	0	0	0	0	0	5
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18025311	18025311	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO15A-97	NM_016239	exon2	c.C3197T	p.A1066V	CACTGGCTGCGTG	.	49	34	68	0	.	0	0	0	0	0	5
TMEM199	147007	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26687565	26687565	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM199-68	NM_152464	exon4	c.G389A	p.G130D	GACATGGTGGGAC	.	38	33	81	1	.	16	2	14	0	0	4
RAB34	83871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27041696	27041696	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAB34-227	NM_001144943	exon11	c.A916G	p.T306A	TGGCAGTTAGGTA	.	116	94	162	1	.	14	14	0	0	0	4
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29528059	29528059	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NF1-3353	NM_001128147	exon10	c.T1067A	p.L356Q	AGAACCTGCTTTT	.	36	26	62	0	.	0	0	0	0	0	5
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29662047	29662047	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NF1-3353	NM_001042492	exon40	c.C6004T	p.Q2002X	CTTGGGCAGGTAT	.	41	28	59	0	.	0	0	0	0	0	5
RHOT1	55288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	30535210	30535210	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RHOT1-93	NM_001033568	exon18	c.T1621C	p.S541P	AGTATTTCACCTA	.	74	53	133	0	.	62	1	61	0	0	5
ZNF830	91603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33289639	33289639	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF830-89	NM_052857	exon1	c.G1054A	p.D352N	GACAGCGATGATG	.	37	27	65	0	.	13	1	12	0	0	5
UNC45B	146862	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33513335	33513335	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UNC45B-157	NM_173167	exon20	c.G2553A	p.E851E	GTTGGAGATCCTC	.	70	51	118	1	.	0	0	0	0	0	4
PSMB3	5691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	36912138	36912138	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PSMB3-90	NM_002795	exon3	c.C191T	p.A64V	TCAGTGCCCAGCG	.	106	78	171	0	.	0	0	0	0	0	5
KRTAP4-3	85290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	39324164	39324164	+	Silent	SNP	G	G	T	rs12600645	bycluster;byfrequency;byhapmap;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRTAP4-3-22	NM_033187	exon1	c.C261A	p.S87S	GCAGCTGGAGATA	.	308	195	279	1	G|0.750;A|0.250	0	0	0	0	0	4
KRTAP9-9	81870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39411754	39411754	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_030975	exon1	c.G117A	p.V39V	CTGTGTGTCTAGC	.	57	44	89	0	.	0	0	0	0	0	5
TUBG1	7283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40767023	40767023	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TUBG1-91	NM_001070	exon11	c.G1320A	p.R440R	CACACGGCCAGAC	.	187	154	211	0	.	37	1	36	0	0	5
ATXN7L3	56970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42274975	42274975	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATXN7L3-68	NM_020218	exon2	c.A175C	p.K59Q	AATCCTTCATGCT	.	103	76	130	0	.	0	0	0	0	0	5
SLC4A1	6521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42337788	42337788	+	Silent	SNP	G	G	A	rs55830560	unknown;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC4A1-92	NM_000342	exon6	c.C469T	p.L157L	GCAGCAGGGCCCG	.	141	107	201	0	.	0	0	0	0	0	5
GPATCH8	23131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	42475271	42475271	+	Missense_Mutation	SNP	C	C	T	rs200060507	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPATCH8-94	NM_001002909	exon8	c.G4174A	p.G1392S	GAATGCCGATGGC	.	97	8	121	0	C|0.999;T|0.001	25	24	1	0	0	3
ACBD4	79777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	43214817	43214817	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACBD4-92	NM_001135707	exon6	c.C498G	p.S166R	CCCAAGCCCAGGT	.	53	44	106	0	.	0	0	0	0	0	5
BZRAP1	9256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56388274	56388274	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BZRAP1-229	NM_004758	exon19	c.C3382T	p.P1128S	CTCCTGGAGGCTC	.	27	21	25	0	.	1	0	1	0	0	5
RNF43	54894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56435785	56435785	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RNF43-92	NM_017763	exon9	c.G1352A	p.C451Y	TCTGTGCAATAGC	.	38	28	71	0	.	0	0	0	0	0	5
RAD51C	5889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56774113	56774113	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAD51C-637	NM_058216	exon3	c.C464T	p.A155V	GTGAAGCAGTTTT	.	95	55	175	0	.	13	2	11	0	0	5
UNC13D	201294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73839590	73839590	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UNC13D-92	NM_199242	exon2	c.C128T	p.P43L	TGGGATGGAGGCT	.	75	61	92	0	.	0	0	0	0	0	5
UBE2O	63893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74387281	74387281	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBE2O-272	NM_022066	exon18	c.C3622A	p.L1208M	AGGCCAGGCCCTG	.	63	54	95	0	.	15	0	15	0	0	5
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76455088	76455088	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH17-142	NM_173628	exon61	c.A9856T	p.I3286F	CGGCAATCTTGTT	.	67	53	98	0	.	0	0	0	0	0	5
ARHGDIA	396	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79827660	79827660	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGDIA-90	NM_004309	exon2	c.A147G	p.R49R	GTACTTTCGCAGG	.	20	19	61	1	.	294	31	262	0	1	3
CABYR	26256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21739840	21739840	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CABYR-90	NM_153769	exon5	c.A946G	p.N316D	AATGCTAATCCTC	.	55	40	86	0	.	0	0	0	0	0	5
MYO5B	4645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	47429038	47429038	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO5B-72	NM_001080467	exon21	c.G2737A	p.A913T	GCTCTGCTGAGCG	.	56	40	71	0	.	13	0	13	0	0	5
TXNL1	9352	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	54293682	54293682	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TXNL1-90	NM_004786	exon2	c.105delG	p.G35fs	ACATGGCCCACAC	.	87	64	160	0	.	0	0	0	0	0	3
PPAP2C	8612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	288051	288051	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPAP2C-90	NM_177543	exon2	c.C236A	p.A79D	ACCCCAGCCATGA	.	321	107	196	0	.	121	109	12	0	0	5
WDR18	57418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	985942	985942	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDR18-91	NM_024100	exon2	c.G288A	p.L96L	CGTCCTGGCAGGA	.	201	88	173	0	.	55	26	29	0	0	5
SGTA	6449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2763724	2763724	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SGTA-91	NM_003021	exon6	c.G424A	p.A142T	CGCCTGCGTAGTT	.	122	51	89	0	.	201	100	101	0	0	5
ZNF77	58492	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	2934175	2934175	+	Missense_Mutation	SNP	G	G	A	rs151130031	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF77-91	NM_021217	exon4	c.C950T	p.T317M	GTGTGCGTCCTCA	.	174	71	192	1	G|0.998;A|0.002	5	5	0	0	0	3
EEF2	1938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3979353	3979353	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EEF2-90	NM_001961	exon11	c.G1687A	p.E563K	GGTCCTCCTCCAG	.	134	63	104	0	.	3761	2086	1673	0	2	5
CHAF1A	10036	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4423813	4423813	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHAF1A-92	NM_005483	exon7	c.C1319T	p.A440V	TTAAAGCAGAGAA	.	87	27	88	2	.	0	0	0	0	0	3
FUT6	2528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	5831650	5831650	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FUT6-90	NM_000150	exon3	c.A929G	p.K310R	TGGTCCTTGTCCA	.	1343	347	1019	1	.	0	0	0	0	0	4
MLLT1	4298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6213091	6213091	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLLT1-658	NM_005934	exon12	c.C1642T	p.R548C	GTTTGCGCACGGT	.	215	102	140	0	.	16	9	7	0	0	5
GPR108	56927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	6731283	6731283	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR108-68	NM_001080452	exon16	c.A1361G	p.Y454C	TAGACGTAGCAGA	.	115	49	53	0	.	0	0	0	0	0	4
PNPLA6	10908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7622153	7622153	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PNPLA6-47	NM_001166111	exon29	c.A3410G	p.Y1137C	GCGGCTACATCAA	.	164	60	69	0	.	69	35	34	0	0	5
LRRC8E	80131	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7965669	7965669	+	Silent	SNP	C	C	T	rs3745385	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC8E-92	NM_001268284	exon4	c.C2262T	p.G754G	CAAAGGCAACCGC	.	162	63	127	1	C|0.956;T|0.044	7	2	5	0	0	3
MAP2K7	5609	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7975940	7975940	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAP2K7-1450	NM_145185	exon7	c.C751T	p.L251L	ATCCTGCTGGACG	.	233	79	150	1	.	24	10	14	0	0	3
FBN3	84467	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8138131	8138131	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBN3-100	NM_032447	exon61	c.C7753T	p.R2585C	TGTTGCGACAGGA	.	239	107	191	2	.	0	0	0	0	0	4
ANGPTL4	51129	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8436389	8436389	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANGPTL4-91	NM_139314	exon6	c.G1022A	p.C341Y	AGAACTGCGCCAA	.	192	81	91	1	.	9	9	0	0	0	4
HNRNPM	4670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8531219	8531219	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HNRNPM-68	NM_005968	exon7	c.G731A	p.R244H	AAAGTCGTGGAAT	.	163	60	143	0	.	126	57	69	0	0	5
PRAM1	84106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8563981	8563981	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_032152	exon2	c.T711C	p.P237P	CTTCTTAGGGAGG	.	59	23	35	0	.	0	0	0	0	0	5
ADAMTS10	81794	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	8645784	8645784	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS10-229	NM_030957	exon26	c.G3305A	p.G1102D	TAGTGGCCATGGC	.	33	8	20	0	.	0	0	0	0	0	3
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9019621	9019621	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUC16-566	NM_024690	exon22	c.A37525G	p.T12509A	CAGAGGTCCGATG	.	328	139	273	0	.	0	0	0	0	0	5
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9084962	9084962	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUC16-566	NM_024690	exon1	c.A6853G	p.T2285A	TTGAAGTCAACTC	.	82	32	84	0	.	0	0	0	0	0	5
OR1M1	125963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9204539	9204539	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR1M1-71	NM_001004456	exon1	c.A619T	p.I207L	ATGGTGATAGCCA	.	117	54	101	0	.	0	0	0	0	0	5
ZNF317	57693	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9271917	9271917	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF317-90	NM_020933	exon7	c.C1596T	p.C532C	CGAATGCGATCAC	.	212	91	148	1	.	23	8	15	0	0	3
ZNF559	84527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9453476	9453476	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF559-91	NM_001202406	exon6	c.C1541T	p.S514L	ACTCCTCGCACCT	.	201	83	133	0	.	6	3	3	0	0	5
ZNF426	79088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9639084	9639084	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF426-91	NM_024106	exon8	c.C1637T	p.S546L	CGAAGTGAACGGG	.	25	12	35	0	.	4	1	3	0	0	5
RAVER1	125950	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10439472	10439472	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAVER1-91	NM_133452	exon3	c.G653A	p.R218H	AGGGTGCGTGGTC	.	382	151	242	1	.	69	37	32	0	0	4
PDE4A	5141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10578111	10578111	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDE4A-523	NM_001111307	exon15	c.G2475A	p.R825R	TTGGAGGACCCTG	.	106	37	97	0	.	3	3	0	0	0	5
ATG4D	84971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10657607	10657607	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATG4D-90	NM_032885	exon4	c.C586T	p.P196S	TGGATGCCCCCAC	.	87	39	33	0	.	41	24	17	0	0	5
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11097117	11097117	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMARCA4-1523	NM_003072	exon4	c.C608T	p.A203V	AGATGGCGGTGCA	.	129	49	65	0	.	57	37	20	0	0	5
DOCK6	57572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11326127	11326127	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DOCK6-93	NM_020812	exon32	c.C4042A	p.P1348T	TCTCCGGATTCCC	.	152	66	137	0	.	11	8	3	0	0	5
ZNF441	126068	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	11892031	11892031	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF441-69	NM_152355	exon4	c.A1392G	p.V464V	TCGAGTACATGAA	.	47	17	44	0	.	1	1	0	0	0	4
ZNF491	126069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11917409	11917409	+	Missense_Mutation	SNP	C	C	T	rs140071849	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF491-92	NM_152356	exon3	c.C641T	p.P214L	AGAAGCCGTACAA	.	44	13	46	0	C|1.000;T|0.000	1	1	0	0	0	4
ZNF700	90592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12060900	12060900	+	Silent	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF700-90	NM_001271848	exon4	c.T2070A	p.S690S	CACATCTGCCAAG	.	168	85	118	0	.	10	4	6	0	0	5
ZNF878	729747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12155177	12155177	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001080404	exon4	c.G1039A	p.A347T	TGAAGGCTTTCAC	.	36	22	24	0	.	0	0	0	0	0	5
ZNF44	51710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12386792	12386792	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF44-23	NM_001164276	exon3	c.A253G	p.I85V	TCCTAATGGTTTC	.	159	66	133	0	.	0	0	0	0	0	5
ZNF563	147837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12430322	12430322	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF563-90	NM_145276	exon4	c.G517A	p.E173K	CACATTCCTTACA	.	210	74	171	0	.	2	0	2	0	0	5
ZNF564	163050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12637692	12637692	+	Silent	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF564-91	NM_144976	exon4	c.A1230T	p.I410I	TTCGTGTATTTGA	.	126	56	86	0	.	9	1	8	0	0	5
MAN2B1	4125	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	12768936	12768936	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAN2B1-94	NM_000528	exon10	c.C1250A	p.A417E	ACCAGCGCCTCCA	.	117	55	46	0	.	58	29	29	0	0	4
TRMT1	55621	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	13216335	13216335	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRMT1-92	NM_001136035	exon15	c.G1669A	p.A557T	AGTTGGCCTCCGG	.	89	34	77	0	.	34	16	18	0	0	4
RFX1	5989	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	14074020	14074020	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RFX1-92	NM_002918	exon19	c.C2638T	p.L880L	AGAGCAGCCGGAT	.	83	26	55	1	.	8	5	3	0	0	3
LPHN1	22859	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	14261780	14261780	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LPHN1-523	NM_001008701	exon24	c.C4330T	p.R1444W	GACGCCGCACCTG	.	110	49	39	0	.	23	11	12	0	0	4
EMR2	30817	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	14865828	14865828	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EMR2-524	NM_013447	exon14	c.A1528G	p.T510A	AGATGGTGCTGGT	.	244	100	176	1	.	0	0	0	0	0	3
OR7A17	26333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14991440	14991440	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR7A17-68	NM_030901	exon1	c.C728T	p.S243L	AGGTGTGATGCAC	.	177	64	160	0	.	0	0	0	0	0	5
WIZ	58525	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	15535673	15535673	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WIZ-68	NM_021241	exon6	c.G1780A	p.A594T	GGTAGGCGCCCAC	.	158	11	89	0	.	30	30	0	0	0	3
CYP4F12	66002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15794437	15794437	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CYP4F12-95	NM_023944	exon7	c.G782C	p.R261P	CCTGCCGCCTGGT	.	139	63	139	0	.	0	0	0	0	0	5
HAUS8	93323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17170457	17170457	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HAUS8-90	NM_033417	exon6	c.A330T	p.K110N	GATGCTTTTGTCT	.	62	29	77	0	.	0	0	0	0	0	5
MYO9B	4650	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17317488	17317488	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO9B-67	NM_001130065	exon34	c.A5387T	p.E1796V	CTGCAGAGCTGCC	.	159	66	116	2	.	1	0	1	0	0	3
MAP1S	55201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	17844087	17844087	+	Silent	SNP	C	C	T	rs113822615	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAP1S-90	NM_018174	exon6	c.C2874T	p.S958S	CGGGAGCAGCGCC	.	336	21	182	0	C|0.500;T|0.500	39	36	3	0	0	3
JAK3	3718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17953936	17953936	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	JAK3-2418	NM_000215	exon5	c.C466T	p.L156F	CCTTGAGACTGAG	.	107	44	65	1	.	0	0	0	0	0	4
PDE4C	5143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18331093	18331093	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDE4C-94	NM_000923	exon8	c.T745A	p.S249T	TTTCGGACAGGTG	.	225	80	208	0	.	0	0	0	0	0	5
SUGP2	10147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19115190	19115190	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SUGP2-91	NM_014884	exon7	c.G2716T	p.A906S	CGGGGGCCTCCTC	.	77	34	33	0	.	21	9	11	1	0	5
NCAN	1463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19337773	19337773	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NCAN-94	NM_004386	exon7	c.G1551A	p.V517V	TGCAGTGAACCAA	.	93	45	84	0	.	0	0	0	0	0	5
NCAN	1463	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	19338131	19338131	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NCAN-94	NM_004386	exon8	c.1702delC	p.P568fs	CTGTGGCCCCCTA	.	31	12	31	0	.	0	0	0	0	0	3
GMIP	51291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19744710	19744710	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GMIP-91	NM_016573	exon19	c.G2374A	p.D792N	CTGGGTCAAGGTG	.	54	26	39	0	.	5	3	2	0	0	5
GMIP	51291	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	19748233	19748233	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GMIP-91	NM_016573	exon11	c.G1065C	p.E355D	CGGGGCCTCGGGC	.	24	9	11	0	.	1	1	0	0	0	3
ZNF486	90649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	20307780	20307780	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF486-47	NM_052852	exon4	c.T261C	p.C87C	TGTGTGTTCTCAT	.	93	41	80	0	.	0	0	0	0	0	5
LSM14A	26065	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34687595	34687595	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LSM14A-91	NM_001114093	exon3	c.C342T	p.F114F	ACCTTTCGGCAGG	.	121	46	156	1	.	76	37	39	0	0	4
UBA2	10054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34941214	34941214	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBA2-227	NM_005499	exon9	c.A816G	p.L272L	CAAACTATGGCGG	.	195	85	131	0	.	78	47	31	0	0	5
SCGB2B2	284402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35085231	35085231	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001025591	exon2	c.C95T	p.A32V	ACATTCGCAAGCA	.	151	69	138	0	.	0	0	0	0	0	5
LGI4	163175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35625482	35625482	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LGI4-91	NM_139284	exon1	c.A103T	p.K35X	TGTCTTTAGAGCA	.	189	83	152	0	.	4	4	0	0	0	5
FFAR2	2867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35941567	35941567	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FFAR2-90	NM_005306	exon1	c.T951C	p.G317G	TGTGGGTCAAGGA	.	123	56	86	0	.	0	0	0	0	0	5
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	36210835	36210837	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLL4-697	NM_014727	exon3	c.586_588del	p.196_196del	ACTGAACTTCTCC	.	114	35	63	0	.	0	0	0	0	0	3
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	36223774	36223774	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLL4-697	NM_014727	exon28	c.C6324A	p.D2108E	TGAGGACCTGCCA	.	97	38	74	0	.	39	19	20	0	0	4
WDR62	284403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36574056	36574056	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDR62-90	NM_173636	exon11	c.C1463G	p.P488R	GGACACCCATGGA	.	148	77	120	0	.	24	7	17	0	0	5
COX7A1	1346	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	36643303	36643303	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COX7A1-226	NM_001864	exon1	c.G7A	p.A3T	GAAGGGCCTGCAT	.	107	47	61	0	.	0	0	0	0	0	4
ZNF793	390927	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38023351	38023351	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF793-68	NM_001013659	exon6	c.A109G	p.M37V	GATGTGATGCTGG	.	175	60	108	1	.	10	7	3	0	0	4
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38590772	38590772	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SIPA1L3-91	NM_015073	exon5	c.G1836A	p.L612L	ACTGCTGAAGCTC	.	81	35	83	0	.	6	1	5	0	0	5
GGN	199720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38875168	38875168	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GGN-90	NM_152657	exon4	c.C1843T	p.L615L	TGCTCAGCCTAGT	.	84	41	69	0	.	0	0	0	0	0	5
RYR1	6261	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39070652	39070652	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RYR1-100	NM_000540	exon100	c.A14395C	p.M4799L	ATGGTGATGTCCC	.	135	46	110	1	.	0	0	0	0	0	4
LGALS7	3963	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	39262626	39262626	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LGALS7-158	NM_002307	exon3	c.C140T	p.A47V	AGCGCGGCATCGG	.	440	216	250	1	.	1	0	1	0	0	3
LGALS7	3963	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	39262667	39262667	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LGALS7-158	NM_002307	exon3	c.C99A	p.F33L	TACATGGAACCTG	.	303	184	200	1	.	0	0	0	0	0	3
PAPL	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39591616	39591616	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001004318	exon8	c.C835T	p.P279S	GCCCGGCCGTGGA	.	66	24	50	0	.	0	0	0	0	0	5
AXL	558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41758838	41758838	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AXL-1403	NM_021913	exon16	c.T1892C	p.F631S	ACAGCTTCCTCCT	.	63	26	59	0	.	9	7	2	0	0	5
CEACAM5	1048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42224956	42224956	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CEACAM5-92	NM_004363	exon8	c.T1886C	p.I629T	GGCGTATCAATGG	.	317	153	279	0	.	0	0	0	0	0	5
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	42838298	42838298	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MEGF8-23	NM_001271938	exon3	c.491delG	p.W164fs	CGGGCTGGGGGGG	.	131	48	29	0	.	0	0	0	0	0	3
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42861562	42861562	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MEGF8-23	NM_001271938	exon28	c.C4837A	p.Q1613K	GCCCCCCAGACCG	.	84	37	53	0	.	0	0	0	0	0	5
PSG6	5675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43411912	43411912	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PSG6-92	NM_001031850	exon4	c.C801A	p.N267K	GGTGTAGTTCCGA	.	156	52	162	0	.	0	0	0	0	0	5
IRGQ	126298	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	44096194	44096194	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IRGQ-92	NM_001007561	exon3	c.1856delC	p.P619fs	GGCTCAGGGGGTG	.	252	123	92	0	.	0	0	0	0	0	3
IRGQ	126298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44097165	44097165	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IRGQ-92	NM_001007561	exon3	c.G885A	p.T295T	GTAGTGCGTTGGG	.	168	61	36	0	.	13	5	8	0	0	5
IRGC	56269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44223111	44223111	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IRGC-70	NM_019612	exon2	c.A401G	p.Y134C	GCCGCTATGACTT	.	104	45	59	0	.	1	1	0	0	0	5
ZNF227	7770	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	44739706	44739706	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF227-91	NM_182490	exon6	c.A1123G	p.T375A	GTCCACACTGAAG	.	61	5	56	0	.	5	4	0	0	1	3
KLC3	147700	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45851316	45851316	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLC3-91	NM_177417	exon5	c.C677T	p.A226V	AGGTGGCGGTGCC	.	323	157	172	1	.	2	2	0	0	0	4
ERCC1	2067	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	45924593	45924593	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ERCC1-659	NM_001983	exon3	c.C164T	p.A55V	GGGGCCGCCTGGG	.	89	36	93	1	.	192	88	104	0	0	3
VASP	7408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46024603	46024603	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VASP-514	NM_003370	exon4	c.G367A	p.A123T	CCCCCAGCACTTC	.	60	32	77	0	.	53	34	19	0	0	5
ZC3H4	23211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47572589	47572589	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZC3H4-74	NM_015168	exon14	c.C2158T	p.H720Y	CGTAGTGCCCGTA	.	51	18	45	0	.	0	0	0	0	0	5
DHX34	9704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47876940	47876940	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DHX34-231	NM_014681	exon9	c.C2047T	p.L683F	GCCAACCTTCGGC	.	134	44	80	0	.	7	4	3	0	0	5
KDELR1	10945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48894556	48894556	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KDELR1-90	NM_006801	exon1	c.G60A	p.L20L	TTTGAGCAGTAGC	.	85	41	63	0	.	816	440	376	0	0	5
FGF21	26291	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	49261316	49261316	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FGF21-522	NM_019113	exon3	c.G469A	p.A157T	GACCCTGCACCCC	.	174	62	114	0	.	1	0	1	0	0	4
RUVBL2	10856	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49507564	49507564	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RUVBL2-227	NM_006666	exon4	c.G154A	p.A52T	CTGGCGGCACGGC	.	163	81	120	1	.	71	35	35	1	0	4
FCGRT	2217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50017380	50017380	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FCGRT-91	NM_001136019	exon3	c.315delG	p.L105fs	AGCTTTGGGGGGA	.	44	21	50	0	.	0	0	0	0	0	3
PRR12	57479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	50100497	50100497	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRR12-70	NM_020719	exon4	c.G2905A	p.E969K	CCACCTGAGGACG	.	59	24	20	0	.	17	11	6	0	0	4
TSKS	60385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50245268	50245268	+	Silent	SNP	C	C	T	rs201242813	unknown;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TSKS-154	NM_021733	exon9	c.G1371A	p.S457S	CAACTGCGACCCC	.	75	33	75	0	C|0.999;A|0.000	0	0	0	0	0	5
VRK3	51231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50498494	50498494	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VRK3-359	NM_016440	exon8	c.G718A	p.A240T	GGATGGCCAGCAG	.	229	96	156	0	.	39	23	16	0	0	5
ASPDH	554235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	51015773	51015773	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASPDH-90	NM_001114598	exon5	c.C497T	p.A166V	CTGTGGGCTGCAG	.	28	10	13	0	.	1	0	1	0	0	4
SIGLEC9	27180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51630290	51630290	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SIGLEC9-91	NM_001198558	exon4	c.C752T	p.S251F	CAGTATCCACAGT	.	63	21	62	0	.	0	0	0	0	0	5
SIGLEC12	89858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52003397	52003397	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SIGLEC12-96	NM_053003	exon2	c.C585T	p.A195A	TATATCGGCCCCT	.	320	120	286	0	.	0	0	0	0	0	5
FPR3	2359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52327406	52327406	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FPR3-501	NM_002030	exon2	c.C405T	p.N135N	CCAGAACCATCGC	.	255	91	216	0	.	1	1	0	0	0	5
ZNF415	55786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53612773	53612773	+	Silent	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF415-91	NM_018355	exon4	c.T525A	p.V175V	TGGTGAAACTGAG	.	108	45	97	0	.	27	24	3	0	0	5
ZNF331	55422	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54080878	54080878	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF331-663	NM_001253801	exon5	c.A1064G	p.Y355C	AGCCGTACAAGTG	.	273	116	200	1	.	15	15	0	0	0	3
NLRP12	91662	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	54312911	54312911	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRP12-211	NM_144687	exon3	c.A2002A	p.S668S	AGGTGGCGCCATA	.	98	36	94	2	.	0	0	0	0	0	3
CACNG7	59284	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54445384	54445384	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNG7-91	NM_031896	exon5	c.G665A	p.S222N	GTCTCAGCGACTG	.	328	137	142	1	.	0	0	0	0	0	3
TFPT	29844	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54617860	54617860	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TFPT-658	NM_013342	exon2	c.T244C	p.Y82H	CCTGGTACTTTCT	.	153	66	89	1	.	64	28	36	0	0	3
NLRP2	55655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55494293	55494293	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRP2-120	NM_017852	exon6	c.G1227A	p.K409K	TCTGAAGCTGCAG	.	334	130	192	0	.	0	0	0	0	0	5
EPS8L1	54869	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55598758	55598758	+	Silent	SNP	G	G	T	rs184296169	unknown;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPS8L1-115	NM_133180	exon19	c.G2040T	p.G680G	GGAGGGGGCACGT	.	140	66	65	1	G|0.999;A|0.000	9	2	7	0	0	3
TNNI3	7137	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	55667611	55667611	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNNI3-92	.	.	.	.	CGGCTGGCAGCGG	.	157	82	58	0	.	15	11	4	0	0	3
PPP6R1	22870	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	55742232	55742232	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPP6R1-67	NM_014931	exon22	c.C2480T	p.T827I	ACAGAGGTAGAGG	.	50	21	18	0	.	131	62	69	0	0	4
NLRP8	126205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56473553	56473553	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLRP8-361	NM_176811	exon4	c.G2163C	p.K721N	TTTGAAGGCTCTC	.	142	75	115	0	.	0	0	0	0	0	5
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1983497	1983497	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYT1L-95	NM_015025	exon6	c.G53A	p.R18Q	ATACCTCGAACCC	.	108	61	63	0	.	0	0	0	0	0	5
TSSC1	7260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	3193197	3193197	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TSSC1-90	NM_003310	exon9	c.G1072A	p.A358T	GGTCAGCCGAGGA	.	289	140	217	0	.	46	18	28	0	0	5
NBAS	51594	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	15694258	15694258	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NBAS-94	NM_015909	exon4	c.G214A	p.A72T	AAGGTGCCGGGCT	.	127	60	100	1	.	0	0	0	0	0	3
SMC6	79677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	17906608	17906608	+	Silent	SNP	C	C	T	rs144198428	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMC6-292	NM_001142286	exon9	c.G642A	p.T214T	AAGTTGCGTTGCT	.	32	6	31	0	C|0.999;T|0.001	14	5	9	0	0	4
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21233246	21233246	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	APOB-175	NM_000384	exon26	c.T6494A	p.I2165N	AAGTTGATTTTGG	.	37	15	39	0	.	0	0	0	0	0	5
NCOA1	8648	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	24929918	24929918	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NCOA1-228	NM_147223	exon11	c.A1579G	p.N527D	GCCTGTAATAATA	.	172	84	162	2	.	22	11	11	0	0	3
OTOF	9381	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	26707488	26707488	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OTOF-135	NM_194248	exon12	c.T1059A	p.H353Q	CTTGTGATGGAAC	.	248	103	168	2	.	0	0	0	0	0	3
DPYSL5	56896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27121385	27121385	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DPYSL5-92	NM_001253724	exon2	c.C18T	p.A6A	CTCAGCCAGCGTG	.	513	241	395	1	.	0	0	0	0	0	4
SLC5A6	8884	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27428302	27428302	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC5A6-92	NM_021095	exon7	c.T650A	p.V217D	ATGATAACTGCCA	.	341	135	240	1	.	0	0	0	0	0	3
PLB1	151056	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	28719029	28719029	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLB1-141	NM_001170585	exon1	c.48delG	p.L16fs	GCTTCTGGGGCAA	.	109	50	77	0	.	0	0	0	0	0	3
CAPN14	440854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	31409307	31409307	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145122	exon16	c.G1632C	p.Q544H	GGTCATCTGGTTC	.	161	72	113	0	.	0	0	0	0	0	5
SLC30A6	55676	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32417996	32417996	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC30A6-90	NM_001193513	exon8	c.C495T	p.R165R	AGAACGCTTTTTG	.	54	23	75	1	.	0	0	0	0	0	4
CRIM1	51232	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	36740805	36740805	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRIM1-118	NM_016441	exon11	c.C1887T	p.C629C	GGAATGCTACTGT	.	200	87	209	2	.	13	12	1	0	0	3
STRN	6801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37096725	37096725	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STRN-91	NM_003162	exon11	c.A1471T	p.N491Y	GTAAATTCCACAT	.	95	44	72	0	.	17	9	8	0	0	5
ABCG5	64240	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	44047175	44047175	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCG5-92	NM_022436	exon11	c.1528delC	p.H510fs	TTAAGTGGGGGGC	.	243	107	233	0	.	0	0	0	0	0	3
ATP6V1E2	90423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	46739273	46739273	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP6V1E2-70	NM_080653	exon2	c.C578T	p.S193L	GTATTTGAAACCT	.	111	41	80	0	.	6	4	2	0	0	5
PSME4	23198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54152700	54152700	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PSME4-275	NM_014614	exon14	c.C1785T	p.T595T	ACATTGGGTGAGG	.	121	57	119	0	.	31	20	11	0	0	5
FAM161A	84140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	62067294	62067294	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM161A-136	NM_032180	exon3	c.T845C	p.F282S	GCTCGGAATTTCT	.	51	29	55	0	.	2	2	0	0	0	5
AFTPH	54812	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	64780103	64780103	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AFTPH-70	NM_017657	exon2	c.G1495T	p.D499Y	AAGTCAGACCTAA	.	55	22	78	1	.	9	5	4	0	0	4
WDR92	116143	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	68368892	68368892	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDR92-68	NM_001256476	exon4	c.G451A	p.D151N	CAGGATCATCTTT	.	158	10	170	0	.	18	17	1	0	0	3
AAK1	22848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	69746290	69746290	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AAK1-333	NM_014911	exon12	c.T1293C	p.T431T	GGCCTGAGTTTGC	.	102	43	80	0	.	11	3	8	0	0	5
EXOC6B	23233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	72742236	72742236	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EXOC6B-68	NM_015189	exon9	c.A935T	p.E312V	TAATTCTCAAATG	.	88	46	74	0	.	20	6	14	0	0	5
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73717935	73717935	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALMS1-142	NM_015120	exon10	c.C8846A	p.P2949H	CCCTTCCTCAAGG	.	57	27	48	0	.	4	2	2	0	0	5
CCDC142	84865	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74709403	74709403	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC142-68	NM_032779	exon1	c.G562A	p.A188T	CGAGAGCGCGAAG	.	163	73	106	1	.	1	0	1	0	0	4
TTC31	64427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74720124	74720124	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTC31-90	NM_022492	exon13	c.G1339A	p.A447T	GAGCTGGCACCCT	.	187	81	136	0	.	24	7	17	0	0	5
HK2	3099	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	75104357	75104357	+	Missense_Mutation	SNP	G	G	A	rs28363015	bycluster;byfrequency;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HK2-252	NM_000189	exon8	c.G940A	p.A314T	AAGATGGCCAAGG	.	89	43	61	1	G|0.952;C|0.048	67	28	39	0	0	4
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	84771614	84771614	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH6-69	NM_001370	exon5	c.T920G	p.I307S	TGTTCATTGTTAA	.	33	18	16	0	.	0	0	0	0	0	4
IMMT	10989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	86371958	86371958	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IMMT-91	NM_006839	exon15	c.G1710A	p.W570X	TGAAAGCCAGAGT	.	63	30	44	0	.	283	101	182	0	0	5
KDM3A	55818	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	86711133	86711133	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KDM3A-291	NM_001146688	exon19	c.T2946A	p.H982Q	AGTGCATCATAAA	.	127	53	109	1	.	24	18	5	1	0	3
ANKRD39	51239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	97519168	97519168	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD39-44	NM_016466	exon3	c.G378A	p.V126V	GTCATCCACCACC	.	167	73	136	0	.	12	3	9	0	0	5
ZAP70	7535	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	2	98340777	98340777	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZAP70-955	NM_001079	exon3	c.G278A	p.G93E	CCGACGGGCTGCC	.	122	66	13	0	.	0	0	0	0	0	3
TBC1D8	11138	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	101652587	101652587	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBC1D8-25	NM_001102426	exon9	c.T1451C	p.V484A	TATTCCACAAAGT	.	68	6	136	0	.	10	10	0	0	0	3
MAP4K4	9448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	102483026	102483026	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAP4K4-547	NM_001242559	exon18	c.C2107T	p.R703C	GGGGAACGCTTCA	.	72	53	106	0	.	13	7	6	0	0	5
SLC9A2	6549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	103300745	103300745	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC9A2-157	NM_003048	exon5	c.T1375C	p.L459L	AAAAAATTGTTTA	.	131	116	174	0	.	1	0	1	0	0	5
SLC5A7	60482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	108609479	108609479	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC5A7-93	NM_021815	exon4	c.T344A	p.L115X	CCATGTTAGACCC	.	84	63	155	0	.	0	0	0	0	0	5
NPHP1	4867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	110902136	110902136	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NPHP1-92	NM_000272	exon15	c.C1531T	p.L511F	AGAAAAGCTCATA	.	108	77	196	0	.	0	0	0	0	0	5
IL37	27178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113671396	113671396	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IL37-92	NM_014439	exon2	c.G110A	p.G37D	AACCAGGCCCAAG	.	128	87	238	0	.	0	0	0	0	0	5
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	116101426	116101426	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DPP10-142	NM_001178034	exon3	c.C221A	p.S74Y	GATTGTCTTTGGA	.	40	12	62	0	.	7	3	4	0	0	5
INHBB	3625	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	2	121103925	121103925	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	INHBB-93	NM_002193	exon1	c.C161A	p.T54N	AGGACACCTGTAC	.	43	38	9	0	.	8	8	0	0	0	3
INHBB	3625	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	2	121103941	121103941	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	INHBB-93	NM_002193	exon1	c.C177T	p.G59G	GTGCGGCGGCTTC	.	57	51	15	0	.	7	7	0	0	0	3
INHBB	3625	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	121103965	121103965	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	INHBB-93	NM_002193	exon1	c.C201T	p.L67L	GGAGCTCGGCCGA	.	75	63	21	0	.	9	9	0	0	0	4
INHBB	3625	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	2	121104035	121104035	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	INHBB-93	NM_002193	exon1	c.C271T	p.R91W	CGGGGCCGGCCCA	.	66	52	11	0	.	9	9	0	0	0	3
INHBB	3625	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	121106703	121106703	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	INHBB-93	NM_002193	exon2	c.A477G	p.L159L	CCGCCTATACTTC	.	125	87	231	2	.	70	64	6	0	0	3
AMER3	205147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	131521542	131521542	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_152698	exon2	c.C1897A	p.P633T	AAGGCCCCAGTTC	.	159	75	159	0	.	0	0	0	0	0	5
AMER3	205147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	131521962	131521962	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_152698	exon2	c.C2317T	p.Q773X	GAGGACCAGCCCT	.	164	71	123	0	.	0	0	0	0	0	5
ARHGEF4	50649	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	131797625	131797625	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGEF4-292	NM_032995	exon7	c.G784A	p.A262T	GACGACGCCCCTC	.	147	117	73	1	.	0	0	0	0	0	3
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	137814011	137814011	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	THSD7B-75	.	.	.	.	GTACAGGAGACTG	.	66	33	53	0	.	14	7	7	0	0	4
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141259364	141259364	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRP1B-311	NM_018557	exon55	c.T8742C	p.D2914D	ACAGTCATCCTTA	.	86	34	102	0	.	0	0	0	0	0	5
LRP1B	53353	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141707930	141707930	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRP1B-311	NM_018557	exon20	c.C3010T	p.H1004Y	AAGAGTGAACACA	.	200	93	191	1	.	0	0	0	0	0	4
GALNT5	11227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	158115854	158115854	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GALNT5-290	NM_014568	exon1	c.G1260A	p.T420T	TGGAACGCACCAG	.	71	33	60	0	.	0	0	0	0	0	5
TANC1	85461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	159954275	159954275	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TANC1-92	NM_033394	exon4	c.C188T	p.S63F	CGATGTCTCTGCC	.	125	49	64	0	.	5	3	2	0	0	5
WDSUB1	151525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160132121	160132121	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WDSUB1-90	NM_152528	exon4	c.A612G	p.R204R	TGCCAGTCGAAAA	.	139	71	101	0	.	20	10	10	0	0	5
PLA2R1	22925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160885416	160885416	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLA2R1-93	NM_001195641	exon5	c.C900T	p.H300H	GCCAGCGTGTTCA	.	389	193	275	1	.	0	0	0	0	0	5
TBR1	10716	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	162274227	162274227	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBR1-91	NM_006593	exon2	c.G733T	p.D245Y	GGTCTCGATCCCA	.	78	25	97	1	.	0	0	0	0	0	3
SLC4A10	57282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162719408	162719408	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC4A10-229	NM_001178016	exon7	c.G635A	p.S212N	AAGTGAGCTCAGG	.	246	118	179	0	.	0	0	0	0	0	5
FIGN	55137	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	164466944	164466944	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FIGN-156	NM_018086	exon3	c.G1398A	p.T466T	GAGGTGCGTGTCA	.	260	100	253	1	.	1	1	0	0	0	4
SCN2A	6326	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166153538	166153538	+	Silent	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCN2A-142	NM_001040143	exon2	c.A279T	p.V93V	TATAGTATTGAAT	.	150	65	135	1	.	0	0	0	0	0	3
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166226748	166226748	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCN2A-142	NM_001040143	exon19	c.C3788T	p.A1263V	GGGTTGCATATGG	.	158	83	160	0	.	0	0	0	0	0	5
GALNT3	2591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166611442	166611442	+	Nonsense_Mutation	SNP	G	G	C	rs144331248	byfrequency;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GALNT3-92	NM_004482	exon8	c.C1524G	p.Y508X	ACTCACGTATCCA	.	105	38	99	0	G|1.000;A|0.000	0	0	0	0	0	5
GALNT3	2591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166621434	166621434	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GALNT3-92	NM_004482	exon3	c.G648A	p.L216L	CTTCAGCAGTATT	.	318	141	290	1	.	0	0	0	0	0	4
SCN7A	6332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	167330837	167330837	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCN7A-67	NM_002976	exon3	c.252delT	p.N84fs	ATTTTTATTTAAT	.	39	12	40	0	.	0	0	0	0	0	3
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168099879	168099879	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	XIRP2-104	NM_152381	exon9	c.A1977C	p.E659D	GTTTGAAACAAGG	.	419	200	345	0	.	0	0	0	0	0	5
DHRS9	10170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169948425	169948425	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DHRS9-90	NM_005771	exon7	c.A698G	p.D233G	CTCCAGACATCAA	.	117	48	99	0	.	1	0	1	0	0	5
HNRNPA3	220988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	178083867	178083867	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HNRNPA3-70	NM_194247	exon9	c.G1064A	p.S355N	GAAGAAGCTCGGG	.	28	10	39	0	.	279	163	116	0	0	5
AGPS	8540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	178285080	178285080	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AGPS-92	NM_003659	exon2	c.G344T	p.G115V	TGACTGGGAAAAG	.	82	33	77	0	.	0	0	0	0	0	5
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179401241	179401241	+	Silent	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_001267550	exon357	c.G100233T	p.V33411V	CCAGGCCACAACA	.	56	25	51	0	.	0	0	0	0	0	5
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179410344	179410344	+	Silent	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_001267550	exon344	c.T95493A	p.P31831P	AGATTCAGGTTTT	.	286	130	208	1	.	0	0	0	0	0	3
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179445148	179445148	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TTN-636	NM_001267550	exon317	c.C66958T	p.R22320C	CACAGCGCAAGAA	.	139	57	117	1	.	0	0	0	0	0	3
FAM171B	165215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	187627230	187627230	+	Missense_Mutation	SNP	G	G	A	rs144563922	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM171B-141	NM_177454	exon8	c.G2161A	p.E721K	AAGCTCGAGAGGG	.	135	69	108	0	G|1.000;A|0.000	1	0	1	0	0	5
TFPI	7035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	188348876	188348876	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TFPI-91	NM_001032281	exon6	c.A603C	p.Q201H	GGTTGATTGCGGA	.	90	44	72	0	.	11	11	0	0	0	5
SLC40A1	30061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	190436531	190436531	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC40A1-91	NM_014585	exon5	c.A424T	p.I142F	TTGCAATATTTGC	.	213	71	161	0	.	10	10	0	0	0	5
SLC40A1	30061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	190436542	190436542	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC40A1-91	NM_014585	exon5	c.C413G	p.T138S	GCAATAGTGATGA	.	190	61	153	0	.	21	20	1	0	0	5
DNAH7	56171	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	196799351	196799351	+	Silent	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH7-102	NM_018897	exon21	c.T3435A	p.V1145V	TAATTCAACCAAC	.	174	63	157	2	.	0	0	0	0	0	3
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196837087	196837087	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH7-102	NM_018897	exon16	c.C1937A	p.S646Y	GCTGGAGAAAAGT	.	175	76	139	0	.	0	0	0	0	0	5
HECW2	57520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197143276	197143276	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HECW2-668	NM_020760	exon15	c.G3111A	p.R1037R	GCGTTGCCTTGTC	.	209	83	148	0	.	1	1	0	0	0	5
ANKRD44	91526	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197865169	197865169	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD44-230	NM_001195144	exon23	c.C2493T	p.I831I	ACTGACGATACTG	.	128	68	113	1	.	4	3	1	0	0	4
MARS2	92935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198571904	198571904	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MARS2-92	NM_138395	exon1	c.G1775A	p.R592Q	CCCACCGGACCTA	.	67	25	79	0	.	47	26	21	0	0	5
C2orf69	205327	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	200789972	200789972	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C2orf69-23	NM_153689	exon2	c.C521T	p.A174V	TTGGTGCCCCAGA	.	171	81	136	2	.	36	21	15	0	0	3
MPP4	58538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	202520986	202520986	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MPP4-22	NM_033066	exon17	c.C1235T	p.P412L	TCGTAAGGGGCAC	.	537	237	414	0	.	0	0	0	0	0	5
ALS2	57679	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	202619338	202619338	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ALS2-275	NM_020919	exon6	c.A1528T	p.T510S	TGGGGGTCAGAAC	.	112	40	99	1	.	4	4	0	0	0	4
NBEAL1	65065	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	204032081	204032081	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NBEAL1-92	NM_001114132	exon37	c.G5908A	p.E1970K	AAAAAAGAGGTAT	.	37	16	43	0	.	0	0	0	0	0	4
FASTKD2	22868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207635989	207635989	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FASTKD2-118	NM_001136193	exon4	c.C965T	p.P322L	ATGCACCGATTGC	.	60	23	51	0	.	56	27	29	0	0	5
PLEKHM3	389072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	208725974	208725974	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLEKHM3-23	NM_001080475	exon7	c.A1963G	p.K655E	CCAGCTTTCCCTC	.	120	50	97	0	.	3	0	3	0	0	5
CRYGD	1421	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	208986447	208986447	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRYGD-90	NM_006891	exon3	c.475delG	p.A159fs	TCGTGGCCCCCCA	.	106	39	91	0	.	0	0	0	0	0	3
ERBB4	2066	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	212589889	212589889	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ERBB4-1461	NM_001042599	exon6	c.A653G	p.D218G	CTGCCGTCACATT	.	298	120	217	2	.	0	0	0	0	0	3
FN1	2335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	216244003	216244003	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FN1-584	NM_212482	exon34	c.C5472T	p.V1824V	GGGTGTGACCTGA	.	197	96	147	0	.	212	143	68	0	1	5
TNS1	7145	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	218686598	218686598	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNS1-156	NM_022648	exon23	c.C3125G	p.S1042C	GGCTCAGAGTCCT	.	204	86	176	2	.	30	17	13	0	0	3
TMBIM1	64114	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219146728	219146728	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMBIM1-90	NM_022152	exon2	c.G137A	p.G46D	CCGTAGCCAGGCT	.	139	66	95	1	.	44	15	29	0	0	3
SLC11A1	6556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219251383	219251383	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC11A1-93	NM_000578	exon5	c.C419A	p.T140N	GGCTGACCATCGA	.	94	50	76	0	.	1	1	0	0	0	5
DOCK10	55619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	225652093	225652093	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DOCK10-92	NM_014689	exon49	c.T5440C	p.Y1814H	ACATGTATAGCTG	.	115	40	93	0	.	15	9	6	0	0	5
GIGYF2	26058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	233651868	233651868	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GIGYF2-28	NM_001103147	exon11	c.A607C	p.N203H	AGACCAAATTTTG	.	64	31	86	0	.	0	0	0	0	0	5
INPP5D	3635	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234091058	234091058	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	INPP5D-652	.	.	.	.	GCAGGCAGTACCA	.	254	117	182	0	.	0	0	0	0	0	4
TRPM8	79054	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234854560	234854560	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPM8-94	NM_024080	exon7	c.G760A	p.D254N	ATCCTGGACAACA	.	137	61	127	1	.	0	0	0	0	0	4
LRRFIP1	9208	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	238672429	238672431	+	In_Frame_Del	DEL	TGG	TGG	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRFIP1-153	NM_001137552	exon11	c.2073_2075del	p.691_692del	GAGGGCTGGTGGT	.	230	78	203	0	.	0	0	0	0	0	3
HDAC4	9759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	240085574	240085574	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HDAC4-291	NM_006037	exon6	c.T536A	p.V179D	TTGAGGACAAATT	.	135	50	126	0	.	6	4	2	0	0	5
ANKMY1	51281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241463346	241463346	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKMY1-90	NM_016552	exon7	c.C1521T	p.S507S	GTCGAAGCTGCTG	.	170	78	142	0	.	9	3	6	0	0	5
RNPEPL1	57140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241516387	241516387	+	Missense_Mutation	SNP	C	C	T	rs193086300	by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RNPEPL1-154	NM_018226	exon10	c.C1864T	p.R622W	AGGGTGCGGCGCT	.	195	76	117	0	C|0.999;T|0.000	113	58	55	0	0	5
GPR35	2859	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	241569558	241569558	+	Silent	SNP	G	G	A	rs201529824	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR35-93	NM_001195382	exon6	c.G282A	p.A94A	CCTGGCGGTGGCC	.	97	49	58	1	G|0.999;A|0.000	0	0	0	0	0	3
KIF1A	547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241737134	241737134	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF1A-91	NM_001244008	exon2	c.C36T	p.V12V	GGGGCGGACCCGC	.	69	30	48	0	.	0	0	0	0	0	5
THAP4	51078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242573029	242573029	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_015963	exon2	c.C543T	p.T181T	CACCATGGTGGCC	.	87	37	76	0	.	87	52	35	0	0	5
ANGPT4	51378	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	896570	896570	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANGPT4-92	NM_015985	exon1	c.C288A	p.N96K	CGTGTTGTTCTGC	.	85	71	117	1	.	0	0	0	0	0	4
ATRN	8455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3546042	3546042	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATRN-154	NM_139321	exon11	c.G1834T	p.V612F	CATGATGTCAACA	.	44	28	80	0	.	26	2	24	0	0	5
SEL1L2	80343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	13850197	13850197	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEL1L2-70	NM_001271539	exon14	c.G1207A	p.E403K	CTTTTTCCGCAGC	.	91	70	124	0	.	0	0	0	0	0	5
CD93	22918	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	23065518	23065518	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CD93-153	NM_012072	exon1	c.1312delC	p.L438fs	CGCAGAGGGGGCC	.	56	43	84	0	.	0	0	0	0	0	3
FAM83C	128876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	33874418	33874418	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM83C-92	NM_178468	exon4	c.C2164A	p.L722M	GACCCAGGGTCAG	.	193	21	172	0	.	0	0	0	0	0	4
GDF5	8200	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34022048	34022048	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GDF5-226	NM_000557	exon2	c.G1165T	p.G389C	GCTTGCCCTGGCG	.	146	63	114	1	.	0	0	0	0	0	4
NDRG3	57446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35288763	35288763	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NDRG3-91	NM_032013	exon13	c.C835T	p.P279S	TTATAGGGTTCAG	.	99	24	51	0	.	94	94	0	0	0	5
MROH8	140699	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35776252	35776252	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	.	.	.	.	GTGGGTCCCCACA	.	56	22	53	0	.	1	0	1	0	0	4
RPN2	6185	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	35833240	35833240	+	Missense_Mutation	SNP	C	C	T	rs145802754	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RPN2-93	NM_002951	exon6	c.C626T	p.A209V	CAACAGCGTTATT	.	205	87	167	1	C|1.000;T|0.000	473	256	216	0	1	3
RPN2	6185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35833294	35833294	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RPN2-93	NM_002951	exon6	c.C680T	p.S227F	AGCCATCCATTAA	.	158	66	115	0	.	0	0	0	0	0	5
LBP	3929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36997687	36997687	+	Missense_Mutation	SNP	C	C	T	rs146665734	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LBP-91	NM_004139	exon10	c.C1030T	p.P344S	TCAGTGCCCTCTG	.	86	35	59	0	C|1.000;T|0.000	0	0	0	0	0	5
ZHX3	23051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	39830791	39830791	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZHX3-93	NM_015035	exon3	c.G2766T	p.E922D	AGACACCTCTGAA	.	164	69	129	0	.	25	16	9	0	0	5
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	40713472	40713472	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPRT-664	NM_133170	exon30	c.A4043C	p.Y1348S	ATACGATAACCAT	.	169	78	136	0	.	0	0	0	0	0	5
JPH2	57158	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	42788359	42788359	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	JPH2-91	NM_020433	exon2	c.G1068A	p.Q356Q	CTTGAGCTGCAGC	.	163	74	90	1	.	2	0	2	0	0	4
WISP2	8839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43348580	43348580	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WISP2-130	NM_003881	exon2	c.C103A	p.P35T	CCCTGGCCACCTC	.	117	52	98	0	.	100	90	10	0	0	5
KCNS1	3787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43726370	43726370	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNS1-90	NM_002251	exon4	c.G1043A	p.R348H	AAGATGCGCATGA	.	166	87	121	0	.	0	0	0	0	0	5
ZNF335	63925	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44586256	44586256	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF335-94	NM_022095	exon17	c.C2411T	p.A804V	CGCTGAGCACTCA	.	119	31	108	1	.	3	2	1	0	0	4
ZMYND8	23613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45865241	45865241	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZMYND8-252	NM_183047	exon16	c.C2547T	p.I849I	CTGTGTGATCTCC	.	139	64	108	0	.	21	11	10	0	0	5
ADNP	23394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	49508387	49508387	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADNP-92	NM_015339	exon5	c.G2864C	p.S955T	ACCTCACTATCAG	.	257	97	247	0	.	104	50	54	0	0	5
TSHZ2	128553	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	51872146	51872146	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TSHZ2-232	NM_173485	exon2	c.T2149C	p.S717P	TCACCTTCCTGCT	.	136	55	106	1	.	9	5	4	0	0	4
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	57429537	57429537	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GNAS-4767	NM_080425	exon1	c.C1217A	p.A406E	CCGGGGCAACCCC	.	53	22	24	0	.	0	0	0	0	0	4
SS18L1	26039	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	60738545	60738545	+	Silent	SNP	G	G	A	rs149920292	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SS18L1-660	NM_198935	exon6	c.G588A	p.S196S	CACGTCGCACTAC	.	169	73	61	0	G|0.999;A|0.001	7	4	3	0	0	4
LAMA5	3911	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	60887715	60887715	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LAMA5-93	NM_005560	exon67	c.9200delG	p.G3067fs	GGCACGCCCCCCA	.	245	83	66	0	.	0	0	0	0	0	3
OGFR	11054	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61444339	61444339	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OGFR-68	NM_007346	exon7	c.C1372T	p.R458W	AGGAAGCGGAGGA	.	170	61	84	1	.	23	14	9	0	0	4
TPTE	7179	broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	10916394	10916394	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TPTE-344	NM_199261	exon20	c.C1252T	p.H418Y	TGAAGTGTTTTAT	.	432	52	469	1	.	6	6	0	0	0	3
LIPI	149998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	15481359	15481359	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LIPI-70	NM_198996	exon10	c.G1401A	p.E467E	CACTTCCTCTCTG	.	59	28	72	0	.	0	0	0	0	0	5
NRIP1	8204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	16337877	16337877	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NRIP1-186	NM_003489	exon4	c.T2637A	p.D879E	TGCAGCATCAACA	.	71	37	69	0	.	9	5	4	0	0	5
TIAM1	7074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	32585718	32585718	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TIAM1-724	NM_003253	exon11	c.G2213A	p.G738D	ACCTTGCCATCTG	.	78	36	71	0	.	0	0	0	0	0	5
SCAF4	57466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33063193	33063193	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCAF4-90	NM_020706	exon15	c.A1802T	p.Y601F	GGAATATAAGTAA	.	170	65	158	0	.	20	14	6	0	0	5
SCAF4	57466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33068463	33068463	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCAF4-90	NM_020706	exon9	c.G1031A	p.R344Q	ATCATTCGTGGCT	.	135	48	112	0	.	17	7	10	0	0	5
ITSN1	6453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	35166743	35166743	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITSN1-94	NM_001001132	exon17	c.A1923G	p.E641E	CATAGAATTAGAA	.	220	111	154	0	.	14	11	3	0	0	5
UMODL1	89766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	43510406	43510406	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UMODL1-93	NM_001199527	exon6	c.575-2A>T	.	CCCTGTAGATGTC	.	162	81	144	0	.	0	0	0	0	0	4
UMODL1	89766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43531012	43531012	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UMODL1-93	NM_173568	exon11	c.C1680T	p.G560G	CATGGGCGGTGGA	.	293	145	241	0	.	0	0	0	0	0	5
UBASH3A	53347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43864737	43864737	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBASH3A-93	NM_018961	exon14	c.C1832T	p.A611V	ATTTTGCCCAACT	.	86	39	61	0	.	2	0	2	0	0	5
DNMT3L	29947	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	45666373	45666373	+	Silent	SNP	C	C	T	rs145238695	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNMT3L-228	NM_013369	exon12	c.G1071A	p.A357A	CTTGGCCGCGAGC	.	133	67	107	2	C|0.998;T|0.002	0	0	0	0	0	3
PFKL	5211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45744513	45744513	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PFKL-251	NM_002626	exon17	c.A1790G	p.D597G	TCGAGGACCCTTT	.	124	53	80	0	.	184	112	72	0	0	5
KRTAP10-2	386679	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	45971060	45971060	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRTAP10-2-135	NM_198693	exon1	c.282delC	p.P94fs	CTGGCAGGGGGAG	.	268	86	112	0	.	0	0	0	0	0	3
KRTAP10-4	386672	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	45994477	45994477	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KRTAP10-4-90	NM_198687	exon1	c.G842A	p.C281Y	TGTGCTGCAAGCC	.	226	103	186	1	.	0	0	0	0	0	3
KRTAP10-7	386675	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	46020976	46020976	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_198689	exon2	c.C440T	p.T147I	GCTGCACCTCCTC	.	439	170	428	1	.	0	0	0	0	0	3
KRTAP10-9	386676	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	46047555	46047555	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_198690	exon1	c.C467T	p.S156F	CCTGCTCTGAGGA	.	341	165	321	2	.	0	0	0	0	0	3
POFUT2	23275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46689778	46689778	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POFUT2-90	NM_015227	exon7	c.G988T	p.V330L	TGGCCACAAACAC	.	97	35	95	0	.	54	26	28	0	0	5
PCBP3	54039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47321002	47321002	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCBP3-227	NM_001130141	exon5	c.C314T	p.A105V	CCTTTGCCATGAT	.	75	28	60	0	.	3	1	2	0	0	5
PCNT	5116	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47858133	47858133	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCNT-141	NM_006031	exon41	c.T9156C	p.N3052N	AGACAATGTTTCC	.	292	112	220	1	.	30	8	22	0	0	4
CCT8L2	150160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	17073304	17073304	+	Missense_Mutation	SNP	A	A	G	rs140831516	unknown;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCT8L2-69	NM_014406	exon1	c.T137C	p.V46A	CGGATGACACTGG	.	80	30	61	0	A|1.000;T|0.000	0	0	0	0	0	5
GAB4	128954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	17472963	17472963	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GAB4-91	NM_001037814	exon2	c.C278A	p.T93N	TTGATGGTGCGCA	.	186	80	169	0	.	0	0	0	0	0	5
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18301894	18301894	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MICAL3-68	NM_015241	exon26	c.G3533T	p.G1178V	TGGGGCCCCTACA	.	57	27	40	0	.	0	0	0	0	0	5
TUBA8	51807	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	18609562	18609562	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TUBA8-90	NM_018943	exon4	c.G817A	p.A273T	ACCTACGCGCCCA	.	260	20	171	0	.	10	10	0	0	0	3
CLTCL1	8218	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	19207427	19207427	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLTCL1-230	NM_001835	exon18	c.G2886A	p.E962E	GTTGGTCTCCTCA	.	184	74	122	2	.	29	19	10	0	0	3
HIRA	7290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	19373067	19373067	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIRA-91	NM_003325	exon12	c.1306delG	p.E436fs	GACTCTCCCCGTT	.	146	60	123	0	.	0	0	0	0	0	3
TRMT2A	27037	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	20100332	20100332	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRMT2A-153	NM_001257994	exon12	c.1654delC	p.L552fs	GGAAAAGGGGGGC	.	27	11	26	0	.	0	0	0	0	0	3
KLHL22	84861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	20812147	20812147	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLHL22-278	NM_032775	exon5	c.G1253A	p.R418H	TCGTAGCGCTCCA	.	154	69	161	0	.	31	18	13	0	0	5
PI4KA	5297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21172828	21172828	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PI4KA-454	NM_058004	exon7	c.G799T	p.E267X	CGCGTTCAGGGCT	.	54	16	55	0	.	0	0	0	0	0	5
AIFM3	150209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21334397	21334397	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AIFM3-280	NM_001146288	exon19	c.C1759T	p.R587W	GCCATCCGGAAGC	.	69	28	45	0	.	5	3	2	0	0	5
CCDC116	164592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21988695	21988695	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC116-92	NM_152612	exon3	c.A457T	p.S153C	CCATCCAGCTCCA	.	127	60	110	0	.	0	0	0	0	0	5
CCDC116	164592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21989306	21989306	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCDC116-92	NM_152612	exon4	c.C954T	p.S318S	GGTCAGCCAGGCT	.	144	63	104	0	.	1	1	0	0	0	5
MAPK1	5594	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	22153374	22153374	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAPK1-1405	NM_002745	exon4	c.A536G	p.D179G	GTGTGATCATGGT	.	126	61	115	2	.	128	71	56	0	1	3
PPM1F	9647	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	22277674	22277674	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPM1F-292	NM_014634	exon8	c.G1156A	p.G386R	GGAGCCCGCTGCC	.	162	67	66	1	.	20	7	13	0	0	3
BCR	613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	23637231	23637231	+	Silent	SNP	G	G	A	rs200598253	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BCR-1349	NM_004327	exon16	c.G2901A	p.E967E	GCTGGAGGGCTCC	.	254	95	192	0	G|1.000;A|0.000	100	50	50	0	0	5
MIF	4282	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	24236679	24236679	+	Silent	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MIF-514	NM_002415	exon1	c.A18T	p.V6V	CATCGTAAACACC	.	357	144	170	0	.	1773	1772	0	0	1	4
MIF	4282	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	24236682	24236682	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MIF-514	NM_002415	exon1	c.C21A	p.N7K	CGTAAACACCAAC	.	354	144	168	0	.	1832	1826	4	1	0	4
CRYBB3	1417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	25601272	25601272	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRYBB3-90	NM_004076	exon5	c.G413A	p.G138D	TGCCCAGCCTGTG	.	279	127	227	0	.	3	2	1	0	0	5
ASCC2	84164	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	30197089	30197089	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASCC2-90	NM_032204	exon15	c.C1579T	p.P527S	GGTCTGGTTTCAT	.	87	36	85	1	.	0	0	0	0	0	4
LIF	3976	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	30639991	30639991	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LIF-650	NM_001257135	exon2	c.G79A	p.D27N	GTCCGTCACGTTG	.	146	65	108	0	.	2	2	0	0	0	4
PATZ1	23598	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31740473	31740473	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PATZ1-590	NM_032050	exon1	c.G1116A	p.R372R	CTTGTGCCGGTTA	.	191	84	125	1	.	20	11	9	0	0	4
MCM5	4174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	35815946	35815946	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MCM5-228	NM_006739	exon14	c.C1773T	p.S591S	GCGGAGCGGGGCC	.	384	162	202	0	.	84	40	44	0	0	5
APOL6	80830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	36055125	36055125	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	APOL6-90	NM_030641	exon3	c.T514A	p.Y172N	ATTATCTATAATC	.	68	35	55	0	.	9	3	6	0	0	5
FOXRED2	80020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	36902258	36902258	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FOXRED2-92	NM_001102371	exon2	c.G212A	p.R71H	GGGTAGCGTGTGA	.	166	68	104	0	.	21	14	7	0	0	5
TEX33	339669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37398216	37398216	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001163857	exon3	c.C151A	p.P51T	GCAGGGGCTGTGG	.	94	43	80	0	.	0	0	0	0	0	5
SSTR3	6753	broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	37602677	37602677	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SSTR3-522	NM_001051	exon2	c.C1166A	p.P389H	CTGCTGGGCGGCC	.	80	40	34	1	.	0	0	0	0	0	3
CARD10	29775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37891531	37891531	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CARD10-662	NM_014550	exon15	c.G2366A	p.R789H	TTACTGCGGGGGC	.	42	19	41	0	.	0	0	0	0	0	5
GCAT	23464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38205970	38205970	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GCAT-90	NM_001171690	exon2	c.A211G	p.I71V	ACTGTCATCTTTC	.	142	61	116	0	.	0	0	0	0	0	5
GALR3	8484	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	22	38221167	38221167	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GALR3-90	NM_003614	exon2	c.G797A	p.S266N	CCTTCAGCCCGGC	.	87	35	15	0	.	0	0	0	0	0	3
TMEM184B	25829	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38620883	38620883	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM184B-68	NM_001195071	exon8	c.C891T	p.F297F	GATGATGAAGTCC	.	208	76	157	1	.	52	27	25	0	0	4
DNAJB7	150353	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	41257875	41257877	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAJB7-227	NM_145174	exon1	c.122_124del	p.41_42del	TCTCTGCTTCTTC	.	51	17	58	0	.	0	0	0	0	0	3
L3MBTL2	83746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41621937	41621937	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	L3MBTL2-92	NM_031488	exon12	c.C1496T	p.P499L	TCACACCGCCAAA	.	87	35	81	0	.	1	1	0	0	0	5
CHADL	150356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	22	41631316	41631316	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHADL-68	NM_138481	exon5	c.G2095T	p.A699S	AGGTGGCCCCCAC	.	38	16	16	0	.	0	0	0	0	0	4
FAM109B	150368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42473559	42473559	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM109B-90	NM_001002034	exon3	c.G262A	p.A88T	GCCTTTGCCATCT	.	110	46	79	0	.	1	1	0	0	0	5
PPARA	5465	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46627995	46627995	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPARA-611	NM_001001928	exon7	c.A1018G	p.T340A	TTTATAACTCGTG	.	243	100	208	2	.	3	1	2	0	0	3
PKDREJ	10343	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46654833	46654833	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKDREJ-156	NM_006071	exon1	c.T4387C	p.S1463P	GAGGAGATACCTC	.	100	29	91	1	.	0	0	0	0	0	4
PKDREJ	10343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46657944	46657944	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKDREJ-156	NM_006071	exon1	c.G1276A	p.D426N	CGTGGTCGCCTTT	.	140	73	111	0	.	0	0	0	0	0	5
PKDREJ	10343	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	22	46658470	46658470	+	Silent	SNP	C	C	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKDREJ-156	NM_006071	exon1	c.G750C	p.P250P	CGCGGCCGGGCAG	.	175	79	15	0	.	0	0	0	0	0	3
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46835094	46835094	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CELSR1-525	NM_014246	exon3	c.C4398T	p.I1466I	GAGGGAGATGGTG	.	156	59	122	0	.	0	0	0	0	0	5
CELSR1	9620	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46931004	46931004	+	Silent	SNP	C	C	T	rs200980756	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CELSR1-525	NM_014246	exon1	c.G2064A	p.T688T	GGGCTGCGTGAAC	.	84	36	69	1	C|0.999;T|0.000	0	0	0	0	0	3
TRABD	80305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50636363	50636363	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRABD-90	NM_025204	exon8	c.C783T	p.V261V	CGACGTCTACCTA	.	144	69	62	0	.	21	9	12	0	0	5
MAPK11	5600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50705599	50705599	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAPK11-1402	NM_002751	exon6	c.T452C	p.L151P	GGCTTCAGGTCCT	.	146	55	51	0	.	0	0	0	0	0	5
SHANK3	85358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	51160574	51160574	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SHANK3-69	NM_033517	exon21	c.C4271T	p.S1424L	AGTCCTCGGACAG	.	71	30	18	0	.	13	3	10	0	0	5
SETD5	55209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9488930	9488930	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SETD5-70	NM_001080517	exon14	c.T1721A	p.V574D	CAAATGTTACCAT	.	50	46	82	0	.	8	0	8	0	0	5
RFTN1	23180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	16475383	16475383	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RFTN1-93	NM_015150	exon3	c.G307A	p.A103T	GGATGGCTCTAAA	.	101	80	162	0	.	11	10	1	0	0	5
RBMS3	27303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	29941226	29941226	+	Missense_Mutation	SNP	C	C	T	rs202069394	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBMS3-90	NM_001177712	exon11	c.C958T	p.P320S	CATCCGCCATACG	.	46	28	54	0	C|0.999;T|0.000	1	1	0	0	0	5
GADL1	339896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	30903251	30903251	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GADL1-90	NM_207359	exon2	c.T44A	p.I15N	TGATCAATATCTC	.	37	27	83	0	.	0	0	0	0	0	5
CMTM8	152189	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	32398985	32398985	+	Missense_Mutation	SNP	A	A	T	rs141869614	unknown;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CMTM8-90	NM_178868	exon2	c.A268T	p.I90F	CTCATTATCTACA	.	73	52	111	2	A|1.000;G|0.000	33	6	27	0	0	3
FBXL2	25827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	33419633	33419633	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXL2-289	NM_012157	exon12	c.C888T	p.C296C	AGAATGCATCCTG	.	65	49	105	0	.	0	0	0	0	0	5
PDCD6IP	10015	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	33883509	33883509	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDCD6IP-228	NM_001162429	exon10	c.T1317G	p.D439E	TGTTGATCAGTTG	.	265	183	409	2	.	73	7	66	0	0	3
MLH1	4292	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	37083763	37083763	+	Nonsense_Mutation	SNP	G	G	T	rs63751081	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLH1-2559	NM_000249	exon15	c.G1672T	p.E558X	AGTGAAGAACTGT	.	44	33	73	2	.	0	0	0	0	0	3
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38921457	38921457	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCN11A-99	NM_014139	exon19	c.A3377T	p.D1126V	ATGAAATCAAGGC	.	52	31	91	0	.	0	0	0	0	0	5
ULK4	54986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41759264	41759264	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ULK4-297	NM_017886	exon23	c.A2411G	p.D804G	AGAAGATCCAGGC	.	68	53	101	0	.	1	0	1	0	0	5
HHATL	57467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	42738492	42738492	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HHATL-93	NM_020707	exon9	c.1010+1G>A	.	CACTCACGTTTCC	.	106	86	155	0	.	0	0	0	0	0	4
KIAA1143	57456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	44803069	44803069	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1143-90	NM_020696	exon1	c.A26G	p.Y9C	CGCACGTACGATA	.	88	71	132	1	.	39	5	34	0	0	5
CCR9	10803	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	45942503	45942503	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCR9-660	NM_031200	exon3	c.T223C	p.Y75H	TACTGGTACTGCA	.	196	144	245	2	.	0	0	0	0	0	3
KLHL18	23276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47378243	47378243	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLHL18-90	NM_025010	exon7	c.A1117G	p.R373G	AGCAAGAGAAGGT	.	174	134	253	0	.	0	0	0	0	0	5
SCAP	22937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47458817	47458817	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCAP-91	NM_012235	exon17	c.G2947T	p.G983W	TCCGCCCCACCAC	.	53	43	61	0	.	197	4	193	0	0	5
UBA7	7318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49846424	49846424	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBA7-228	NM_003335	exon18	c.G2332C	p.A778P	CAGAAGCCGAAGC	.	76	61	133	0	.	14	3	11	0	0	5
RRP9	9136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	51968549	51968549	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RRP9-154	NM_004704	exon13	c.T1199C	p.V400A	AGCCGCACACAGG	.	244	184	338	1	.	22	2	20	0	0	5
DUSP7	1849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52085041	52085041	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DUSP7-659	NM_001947	exon3	c.G1050A	p.M350I	CAGGTTCATCTTC	.	94	73	90	0	.	5	3	2	0	0	5
DUSP7	1849	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	3	52088244	52088244	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DUSP7-659	NM_001947	exon2	c.G664A	p.D222N	CTCGGTCCGACTC	.	144	108	156	0	.	1	1	0	0	0	3
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52438537	52438537	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BAP1-1032	NM_004656	exon12	c.C1182T	p.Y394Y	ATCTGAGTACTGC	.	103	83	133	1	.	4	2	2	0	0	5
PHF7	51533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52457218	52457218	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHF7-153	NM_016483	exon11	c.C1031G	p.T344S	CTTGGACTGATTG	.	188	152	252	1	.	7	1	6	0	0	4
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52543970	52543970	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STAB1-139	NM_015136	exon23	c.G2432A	p.S811N	GCTTCAGTGGCCG	.	134	108	159	0	.	4	4	0	0	0	5
DENND6A	201627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57616494	57616494	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_152678	exon17	c.A1465T	p.T489S	GTCCTGTTTTCTC	.	30	23	52	0	.	6	0	6	0	0	5
ABHD6	57406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	58255106	58255106	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABHD6-92	NM_020676	exon4	c.C335T	p.T112I	GCACCACCCGCTC	.	173	135	207	1	.	31	0	31	0	0	4
CNTN3	5067	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	74548830	74548830	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTN3-137	NM_020872	exon2	c.C162T	p.G54G	TGGATTGCCTCTT	.	16	14	42	1	.	0	0	0	0	0	4
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	77147394	77147394	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ROBO2-328	NM_002942	exon2	c.C291T	p.H97H	CGTGCACGGGCGC	.	246	206	333	0	.	0	0	0	0	0	5
GBE1	2632	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	81635291	81635291	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GBE1-25	NM_000158	exon10	c.T1287C	p.G429G	AAAACCACCCCCT	.	34	27	50	0	.	75	1	74	0	0	4
ABI3BP	25890	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	100508327	100508327	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABI3BP-138	NM_015429	exon24	c.G2000A	p.R667K	GATGTTCTGGGCC	.	42	40	77	2	.	4	0	4	0	0	4
LSAMP	4045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	115529261	115529261	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LSAMP-90	NM_002338	exon7	c.G920A	p.R307K	CCAGGTCCTGCAG	.	130	107	186	0	.	0	0	0	0	0	5
OSBPL11	114885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	125298757	125298757	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OSBPL11-135	NM_022776	exon3	c.C361T	p.H121Y	AGGTGTGAGAATC	.	41	32	72	0	.	12	0	12	0	0	5
ISY1	57461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	128853775	128853775	+	Silent	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ISY1-90	NM_001199469	exon9	c.A507T	p.T169T	AGCACGTGTCTTT	.	38	27	88	0	.	53	11	42	0	0	5
TMCC1	23023	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129546844	129546844	+	Silent	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMCC1-91	NM_001017395	exon3	c.C378A	p.G126G	TGGCTTGCCCCGC	.	59	41	95	1	.	7	1	6	0	0	4
ATP2C1	27032	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130720162	130720162	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP2C1-91	NM_001199181	exon27	c.A2830C	p.S944R	CATGTTAGTTCGA	.	83	60	96	1	.	30	4	26	0	0	4
DNAJC13	23317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132179933	132179933	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAJC13-272	NM_015268	exon15	c.G1597A	p.D533N	CTCTTGGACTTCC	.	100	81	160	0	.	3	1	2	0	0	5
TSC22D2	9819	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	150127417	150127417	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TSC22D2-91	NM_014779	exon1	c.C280A	p.L94M	GGGCAGCTGGCAG	.	67	54	93	0	.	0	0	0	0	0	4
SLITRK3	22865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	164905717	164905717	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLITRK3-100	NM_014926	exon2	c.G2902A	p.E968K	GGACTTCGAGGTA	.	73	55	130	1	.	0	0	0	0	0	4
PDCD10	11235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	167414893	167414893	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDCD10-659	NM_145860	exon4	c.C172G	p.L58V	GTGTGAGACCTGG	.	15	10	39	0	.	16	1	15	0	0	5
LRRC34	151827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	169514632	169514632	+	Missense_Mutation	SNP	G	G	A	rs201395437	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC34-90	NM_001172779	exon8	c.C809T	p.A270V	TGTAGTGCAACAA	.	70	52	167	0	G|0.999;A|0.001	1	1	0	0	0	5
GHSR	2693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	172165571	172165571	+	Silent	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GHSR-501	NM_198407	exon1	c.G633T	p.T211T	CATGACCGTGAGC	.	121	95	210	1	.	0	0	0	0	0	5
NAALADL2	254827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	175165096	175165096	+	Silent	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NAALADL2-47	NM_207015	exon6	c.G1170T	p.L390L	AAAACTGATCTCT	.	48	39	60	0	.	4	0	4	0	0	5
ATP11B	23200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	182538053	182538053	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP11B-93	NM_014616	exon2	c.T33C	p.F11F	GGGTTTTGACCCA	.	62	52	80	0	.	0	0	0	0	0	5
VWA5B2	90113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183953046	183953046	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_138345	exon7	c.G1051A	p.A351T	GGGACAGCTACTC	.	118	80	194	0	.	27	0	27	0	0	5
VWA5B2	90113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183957477	183957477	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_138345	exon15	c.G2393A	p.G798E	CCCCAGGAAACCT	.	60	50	75	0	.	0	0	0	0	0	5
ALG3	10195	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183962454	183962454	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_005787	exon5	c.C661T	p.L221F	GGAGAAGAAACAG	.	26	18	43	1	.	64	4	60	0	0	4
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	184049834	184049834	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EIF4G1-344	NM_001194946	exon33	c.C4599T	p.Y1533Y	GCTCTACGCCCTC	.	114	6	185	0	.	287	267	19	0	1	3
POLR2H	5437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184083008	184083008	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POLR2H-90	NM_006232	exon3	c.C245T	p.P82L	ATAGGCCTTCCAG	.	101	76	206	0	.	1	0	1	0	0	5
FGF12	2257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	192053209	192053209	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FGF12-949	NM_021032	exon3	c.C355T	p.Q119X	CTCCTTGGATGGC	.	167	136	200	0	.	0	0	0	0	0	5
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	195511828	195511828	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUC4-90	NM_018406	exon2	c.6623delC	p.P2208fs	GGAAGAGGGGTGG	.	415	76	521	0	.	0	0	0	0	0	3
PIGG	54872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	527709	527709	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIGG-92	NM_001127178	exon12	c.T2674C	p.Y892H	GGGACGTACGCAG	.	301	112	206	0	.	50	23	27	0	0	5
IDUA	3425	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	996231	996231	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IDUA-91	NM_000203	exon8	c.C1147T	p.R383C	CTGTTGCGCAAGC	.	183	87	36	1	.	8	4	4	0	0	3
SPON2	10417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1164348	1164348	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPON2-90	NM_012445	exon5	c.C653T	p.P218L	TGGCTGGGAGAGG	.	119	47	88	0	.	13	13	0	0	0	5
NELFA	7469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1989663	1989663	+	Missense_Mutation	SNP	G	G	A	rs145121989	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_005663	exon4	c.C649T	p.R217W	TCTTCCGCAGCAG	.	41	24	43	0	G|1.000;A|0.000	38	12	25	0	1	5
NOP14	8602	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	2948138	2948138	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NOP14-91	NM_003703	exon12	c.1635+1G>T	.	TGCTTACCACATC	.	99	57	64	1	.	7	0	7	0	0	3
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3137678	3137678	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HTT-281	NM_002111	exon20	c.C2681T	p.A894V	GAGGGGCTCATCA	.	152	45	142	0	.	9	5	4	0	0	5
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3240681	3240681	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HTT-281	NM_002111	exon66	c.C9191T	p.S3064F	GCGCGTCCACCAG	.	129	60	82	0	.	72	38	34	0	0	5
RGS12	6002	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	3432431	3432431	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RGS12-226	NM_002926	exon17	c.3863delC	p.T1288fs	GGACGACCCCCCC	.	48	23	30	0	.	0	0	0	0	0	3
KCNIP4	80333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	20731736	20731736	+	Missense_Mutation	SNP	C	C	T	rs149977507	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNIP4-91	NM_025221	exon8	c.G662A	p.R221H	ATGGAGCGCATTA	.	93	37	93	0	C|1.000;T|0.000	1	1	0	0	0	5
ARAP2	116984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	36214032	36214032	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARAP2-93	NM_015230	exon5	c.T1119C	p.F373F	GATGATAAAAGAG	.	48	18	63	0	.	0	0	0	0	0	5
TBC1D1	23216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	38119794	38119794	+	Silent	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBC1D1-91	NM_015173	exon17	c.A2943T	p.G981G	GCTGGGATTCGTA	.	105	41	68	0	.	19	13	6	0	0	5
PDS5A	23244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39868540	39868540	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001100399	exon23	c.T2583C	p.L861L	TAACCGAAGGGTT	.	89	32	103	0	.	55	39	16	0	0	5
CHRNA9	55584	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	40339332	40339332	+	Silent	SNP	A	A	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CHRNA9-96	NM_017581	exon3	c.A316C	p.R106R	TCCATCAGGATCC	.	156	62	154	1	.	0	0	0	0	0	4
PDGFRA	5156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55153648	55153648	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDGFRA-9497	NM_006206	exon19	c.T2614G	p.Y872D	AACCTCTACACCA	.	185	85	143	0	.	0	0	0	0	0	5
SRP72	6731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57357651	57357651	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SRP72-116	NM_006947	exon16	c.G1557T	p.E519D	TGTTGAGGCTCTT	.	159	60	126	0	.	75	35	40	0	0	5
IGFBP7	3490	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	57907052	57907052	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGFBP7-522	NM_001553	exon2	c.G523A	p.A175T	CCTGGGCACCAGT	.	147	63	141	0	.	1724	1722	1	0	1	4
CENPC1	1060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	68380317	68380317	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CENPC1-205	NM_001812	exon8	c.G919T	p.E307X	CCGACTCATCAAT	.	70	25	71	0	.	7	5	2	0	0	5
UBA6	55236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	68530972	68530972	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBA6-90	NM_018227	exon10	c.G832A	p.E278K	CCAGTTCTGTGGT	.	173	66	163	0	.	25	11	14	0	0	5
TMPRSS11E	28983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	69343139	69343139	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMPRSS11E-70	NM_014058	exon8	c.T760C	p.S254P	AAACCTTCGAAAA	.	204	96	186	0	.	0	0	0	0	0	5
UGT2B10	7365	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	69682216	69682216	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UGT2B10-65	.	.	.	.	TGCTGGCTGAGCT	.	409	181	305	2	.	0	0	0	0	0	3
ODAM	54959	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71068483	71068483	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ODAM-134	NM_017855	exon9	c.A659G	p.E220G	CAGGAGAAGAGAT	.	185	76	141	1	.	0	0	0	0	0	4
CABS1	85438	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71201374	71201374	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CABS1-93	NM_033122	exon1	c.G618T	p.Q206H	TGTCCAGGTCACT	.	186	89	156	1	.	0	0	0	0	0	4
ADAMTS3	9508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	73148985	73148985	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS3-651	NM_014243	exon22	c.A3486G	p.S1162S	CATTTGTGAAGCT	.	136	51	108	0	.	0	0	0	0	0	5
AFP	174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74303978	74303978	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AFP-91	NM_001134	exon3	c.G225A	p.E75E	AATTGAGAAACCC	.	74	25	63	0	.	0	0	0	0	0	5
MTHFD2L	441024	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	75041061	75041061	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MTHFD2L-91	NM_001144978	exon3	c.C392G	p.T131S	ACGTAACTGATCA	.	160	72	114	1	.	3	0	3	0	0	4
FAM47E-STBD1	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	77177441	77177441	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001242939	exon2	c.G185A	p.C62Y	CGCCTTGCACTGG	.	90	33	87	0	.	1	0	1	0	0	4
SHROOM3	57619	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	77692038	77692038	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SHROOM3-93	NM_020859	exon10	c.G5609A	p.S1870N	ATGCCAGTAATGA	.	276	112	195	2	.	0	0	0	0	0	3
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79258865	79258865	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FRAS1-68	NM_001166133	exon20	c.G2316C	p.L772F	GCCGTTGGAGTCT	.	334	136	230	0	.	0	0	0	0	0	5
BMP2K	55589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79832494	79832494	+	Silent	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BMP2K-383	NM_198892	exon16	c.A2793T	p.V931V	AGATGTATTTGGC	.	565	211	536	1	.	20	10	10	0	0	5
PTPN13	5783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87643506	87643506	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPN13-230	NM_006264	exon10	c.C1527T	p.I509I	CACAATCAAAGCG	.	494	214	368	0	.	5	1	4	0	0	5
PTPN13	5783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87643549	87643549	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPN13-230	NM_006264	exon10	c.A1570G	p.I524V	AGAGAAATTGCCC	.	446	172	339	0	.	3	2	1	0	0	5
FAM13A	10144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	89679992	89679992	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM13A-70	NM_014883	exon14	c.C1639T	p.Q547X	CATCTTGATTTCT	.	146	58	93	0	.	4	4	0	0	0	5
GRID2	2895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	94547465	94547465	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRID2-159	NM_001510	exon14	c.G2239A	p.E747K	GTATTGGAATATG	.	119	50	93	0	.	0	0	0	0	0	5
ADH7	131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100349715	100349715	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADH7-227	NM_001166504	exon3	c.A253T	p.I85F	CCACAATCACTGG	.	132	51	96	0	.	0	0	0	0	0	5
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	4	104066472	104066472	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CENPE-277	NM_001813	exon32	c.A4592G	p.K1531R	TCCTCTTTCTCAT	.	12	5	9	0	.	3	3	0	0	0	3
TET2	54790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	106196337	106196337	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TET2-4618	NM_001127208	exon11	c.T4670A	p.V1557D	AGTCTGTCAACTC	.	178	78	124	0	.	2	1	1	0	0	5
SEC24B	10427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	110460806	110460806	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEC24B-137	NM_006323	exon24	c.A3782G	p.H1261R	TGCTTCATGTTCA	.	42	20	40	0	.	65	36	29	0	0	5
PITX2	5308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	111539802	111539802	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PITX2-650	NM_000325	exon3	c.C454T	p.R152C	GGTTGCGCTCCCT	.	138	64	115	0	.	0	0	0	0	0	5
C4orf21	55345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	113484389	113484389	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C4orf21-90	NM_018392	exon17	c.G4480C	p.D1494H	AAGTATCCAGCTC	.	153	67	122	0	.	1	1	0	0	0	5
PRDM5	11107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	121616316	121616316	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRDM5-91	NM_018699	exon16	c.G1843A	p.D615N	GGTAGTCATTCCT	.	57	39	94	0	.	0	0	0	0	0	5
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	126373258	126373258	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAT4-108	NM_024582	exon9	c.A11087G	p.N3696S	CGAGCAACATCCG	.	99	81	160	0	.	0	0	0	0	0	5
PCDH10	57575	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	134071935	134071935	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDH10-92	NM_032961	exon1	c.G640A	p.E214K	GTAGGAGAAGGAG	.	36	28	58	1	.	0	0	0	0	0	4
MAML3	55534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	140811799	140811799	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAML3-455	NM_018717	exon2	c.A791T	p.D264V	AAGCTATCCTCCA	.	70	43	136	0	.	3	1	2	0	0	5
NR3C2	4306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	149041326	149041326	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NR3C2-154	NM_000901	exon7	c.T2624C	p.L875S	AGCAGCAAAACTT	.	56	41	115	0	.	0	0	0	0	0	5
TLR2	7097	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	154624389	154624392	+	Frame_Shift_Del	DEL	TTAC	TTAC	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TTAC	TTAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TLR2-523	NM_003264	exon3	c.330_333del	p.110_111del	CTATAATTACTTA	.	50	33	73	0	.	0	0	0	0	0	3
GUCY1A3	2982	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	156638325	156638325	+	Silent	SNP	C	C	T	rs112384014	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GUCY1A3-93	NM_001130687	exon8	c.C1587T	p.G529G	CATTGGCGATGCC	.	139	102	227	2	C|0.500;T|0.500	6	5	1	0	0	3
FAM198B	51313	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	159092094	159092094	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM198B-90	NM_016613	exon2	c.T434C	p.L145S	CCGACCAAAGCCT	.	68	55	117	0	.	9	4	5	0	0	4
NAF1	92345	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	164050138	164050138	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NAF1-70	NM_138386	exon8	c.T1396C	p.Y466H	GGGAGTATGGTAA	.	10	8	22	0	.	0	0	0	0	0	4
NPY5R	4889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	164271440	164271440	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NPY5R-523	NM_006174	exon4	c.C15T	p.L5L	AGAGCTCGACGAG	.	18	13	48	0	.	0	0	0	0	0	5
AGA	175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	178358622	178358622	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AGA-90	NM_000027	exon5	c.A559G	p.I187V	TTAAGATACCAGG	.	108	88	183	0	.	20	1	19	0	0	5
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	187532668	187532668	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAT1-34	NM_005245	exon14	c.A9725G	p.D3242G	AGAATGTCCTCAG	.	215	170	348	1	.	10	2	8	0	0	4
SDHA	6389	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	236583	236583	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SDHA-226	NM_004168	exon10	c.G1301A	p.G434D	TGCCCGGCCTGTA	.	467	194	325	0	.	283	149	134	0	0	4
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13701414	13701414	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH5-182	NM_001369	exon77	c.A13470G	p.G4490G	TAAAAATCCCTGG	.	45	20	56	0	.	0	0	0	0	0	5
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13809182	13809182	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH5-182	NM_001369	exon46	c.C7723T	p.L2575L	GAATTAGAAAGTC	.	204	92	170	0	.	0	0	0	0	0	5
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16711035	16711035	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYO10-3	NM_012334	exon21	c.G2151A	p.W717X	CAGCTGCCACTCG	.	136	51	89	0	.	6	6	0	0	0	5
ZFR	51663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	32355934	32355934	+	Missense_Mutation	SNP	C	C	T	rs55686708	bycluster	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFR-90	NM_016107	exon20	c.G3157A	p.D1053N	CACTATCTCTTCT	.	102	34	81	0	.	233	122	111	0	0	4
ADAMTS12	81792	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	33881505	33881505	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADAMTS12-232	NM_030955	exon2	c.G208A	p.G70S	GCAAGCCATATGA	.	75	33	71	1	.	3	3	0	0	0	3
SLC1A3	6507	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	36677261	36677261	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC1A3-90	NM_004172	exon6	c.A835G	p.M279V	GCCATCATGAGAC	.	185	89	140	1	.	11	5	6	0	0	3
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	36953863	36953863	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NIPBL-293	NM_133433	exon2	c.64+1G>A	.	CAGACCGTAAGTT	.	66	27	69	0	.	0	0	0	0	0	5
MROH2B	133558	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	41000914	41000914	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_173489	exon38	c.A4216G	p.T1406A	TGGCAGTCAATCT	.	124	48	139	1	.	1	0	1	0	0	4
OXCT1	5019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	41739509	41739509	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OXCT1-133	NM_000436	exon16	c.A1504G	p.T502A	ACCCAGTACTCTT	.	121	48	105	0	.	4	0	4	0	0	5
PAIP1	10605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	43539100	43539100	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAIP1-69	NM_006451	exon5	c.A772G	p.K258E	CCCCTTTTGCAGC	.	56	27	44	0	.	167	93	74	0	0	5
SETD9	133383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	56207218	56207218	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_153706	exon2	c.A321G	p.Q107Q	ACAGCAAAGTACC	.	74	31	66	0	.	4	0	4	0	0	5
MIER3	166968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	56234785	56234785	+	Silent	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MIER3-90	NM_152622	exon4	c.A240T	p.P80P	AACTGCTGGAATT	.	114	38	83	0	.	9	5	4	0	0	5
NLN	57486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	65058794	65058794	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLN-90	NM_020726	exon3	c.G309A	p.R103R	GGAAAGGACCATG	.	115	50	94	0	.	0	0	0	0	0	5
SLC30A5	64924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	68412226	68412226	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC30A5-226	NM_022902	exon10	c.A1078G	p.N360D	GCTGCCAATATCT	.	66	28	47	0	.	0	0	0	0	0	5
POLK	51426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74869656	74869656	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POLK-229	NM_016218	exon5	c.C502T	p.P168S	ATAGTGCCCCCCA	.	160	78	158	0	.	20	15	5	0	0	5
IQGAP2	10788	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	75896750	75896750	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IQGAP2-96	NM_006633	exon11	c.A1185C	p.R395S	ACTCAGAAGCCCC	.	177	87	127	2	.	1	1	0	0	0	3
VCAN	1462	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82816109	82816109	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VCAN-238	NM_004385	exon7	c.A1984G	p.K662E	GGTGATAAAATAT	.	66	26	66	1	.	0	0	0	0	0	4
CETN3	1070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	89703515	89703515	+	Splice_Site	SNP	C	C	T	rs143515805	unknown;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CETN3-90	NM_004365	exon3	c.153+1G>A	.	CCATTACCTTTAA	.	91	36	89	0	C|1.000;G|0.000	0	0	0	0	0	4
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89990218	89990218	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR98-103	NM_032119	exon33	c.A7645G	p.N2549D	CTCATGAACATTT	.	146	68	151	0	.	0	0	0	0	0	5
NR2F1	7025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	92923842	92923842	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NR2F1-227	NM_005654	exon2	c.T683C	p.F228S	TGCTCTTCAGCGC	.	294	122	153	0	.	7	4	3	0	0	5
KIAA0825	285600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	93807267	93807267	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA0825-91	NM_001145678	exon9	c.C1625T	p.A542V	AGGGGTGCTTTGG	.	113	50	93	0	.	0	0	0	0	0	5
ERAP1	51752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96117463	96117463	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ERAP1-70	NM_001198541	exon16	c.C2381G	p.S794C	GTACTGGACAAAG	.	60	21	42	0	.	7	4	3	0	0	5
LNPEP	4012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96315242	96315242	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LNPEP-229	NM_005575	exon2	c.C420T	p.G140G	AGAAGGCTGCCAT	.	158	64	120	0	.	2	1	1	0	0	5
LNPEP	4012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96315342	96315342	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LNPEP-229	NM_005575	exon2	c.C520T	p.P174S	GTTGTGCCACTAC	.	101	47	95	0	.	8	4	4	0	0	5
SLCO4C1	353189	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	101631819	101631819	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLCO4C1-93	NM_180991	exon1	c.C148T	p.Q50X	GCTTCTGAAGCTC	.	47	20	34	1	.	0	0	0	0	0	4
APC	324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	112178919	112178919	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	APC-12026	NM_001127510	exon17	c.G7628A	p.R2543K	TCAATAGGTCAGG	.	146	59	111	0	.	31	20	11	0	0	5
AQPEP	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	115320392	115320392	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_173800	exon3	c.G964A	p.E322K	AGAACAGAAAGGG	.	193	88	173	2	.	0	0	0	0	0	3
SEMA6A	57556	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	115782363	115782363	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEMA6A-92	NM_020796	exon19	c.A3039G	p.K1013K	GGATGGTTTGGGG	.	123	61	113	1	.	40	17	23	0	0	3
SEMA6A	57556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	115815886	115815886	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEMA6A-92	NM_020796	exon12	c.G1182A	p.T394T	CGGGTGCGTCTTG	.	201	86	152	0	.	35	22	13	0	0	5
FAM170A	340069	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	118970154	118970154	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM170A-91	NM_182761	exon3	c.C711T	p.F237F	GGTGTTCACCACC	.	162	67	142	1	.	0	0	0	0	0	4
ZNF608	57507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	123976977	123976977	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF608-229	NM_020747	exon7	c.C4418T	p.P1473L	ATTAGCGGGTAAC	.	136	64	135	0	.	10	8	2	0	0	5
SLC12A2	6558	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	127493843	127493843	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC12A2-94	NM_001046	exon16	c.G2462A	p.G821D	TCTGTGGCCATGT	.	117	57	82	1	.	0	0	0	0	0	3
RAPGEF6	51735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	130766961	130766961	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAPGEF6-661	NM_001164387	exon28	c.T4095A	p.H1365Q	AATGATATGCTCT	.	67	33	70	0	.	8	5	3	0	0	5
PCBD2	84105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	134296370	134296370	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCBD2-90	NM_032151	exon4	c.G392A	p.X131X	CTGTGTGATTTCT	.	122	54	101	0	.	11	5	6	0	0	5
TGFBI	7045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	135396593	135396593	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TGFBI-26	NM_000358	exon14	c.T1874C	p.V625A	GCGTGGTCCATGT	.	452	177	402	1	.	87	83	4	0	0	5
KDM3B	51780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137722268	137722268	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KDM3B-542	NM_016604	exon7	c.G1338A	p.V446V	GACTGTGCCAGAA	.	307	137	258	0	.	21	11	10	0	0	5
PCDHB2	56133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140475545	140475545	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB2-96	NM_018936	exon1	c.C1171T	p.L391F	GATGATCTTCCTT	.	292	138	227	0	.	1	1	0	0	0	5
PCDHB5	26167	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140516394	140516394	+	Nonsense_Mutation	SNP	C	C	T	rs201677139	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB5-95	NM_015669	exon1	c.C1378T	p.R460X	TTCGTCCGAGAGA	.	322	133	231	1	C|0.998;G|0.001;T|0.001	98	67	31	0	0	4
PCDHB6	56130	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140531452	140531452	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB6-91	NM_018939	exon1	c.G1614A	p.A538A	CCCGGCGTTGAGC	.	514	223	137	1	.	0	0	0	0	0	3
PCDHB7	56129	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140554289	140554289	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB7-95	NM_018940	exon1	c.C1873T	p.R625C	GAGGTGCGTACCG	.	289	60	44	1	.	1	1	0	0	0	3
PCDHGA3	56112	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140724077	140724077	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHGA3-68	NM_032011	exon1	c.C477T	p.D159D	TTTTGACCCAGAT	.	92	38	63	1	.	3	0	3	0	0	4
PCDHGB6	56100	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140789294	140789294	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_032100	exon1	c.G1525A	p.A509T	GTGAGCGCGCAGA	.	192	82	96	1	.	1	1	0	0	0	4
NR3C1	2908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	142662181	142662181	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NR3C1-92	NM_001024094	exon8	c.C2136T	p.N712N	CTGCCAGTTCTGG	.	52	17	56	0	.	29	12	17	0	0	5
GRXCR2	643226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145246099	145246099	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRXCR2-22	NM_001080516	exon2	c.G529A	p.A177T	TTTCTGCCTCCAC	.	105	20	58	0	.	0	0	0	0	0	5
RBM27	54439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145634509	145634509	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBM27-70	NM_018989	exon10	c.C1448A	p.T483K	CAGATACATATGA	.	69	21	68	0	.	0	0	0	0	0	5
RBM27	54439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	145647328	145647328	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBM27-70	NM_018989	exon15	c.A2448C	p.K816N	AAAAAAACAGGTA	.	272	115	241	1	.	0	0	0	0	0	4
TCERG1	10915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145834680	145834680	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TCERG1-92	NM_006706	exon2	c.C121T	p.R41X	GTGATGCGAGGCC	.	140	66	115	0	.	7	5	2	0	0	5
TCERG1	10915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145849290	145849290	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TCERG1-92	NM_006706	exon7	c.A1382G	p.Q461R	AACCCCAAGAACT	.	37	11	47	0	.	14	5	9	0	0	5
FBXO38	81545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	147805102	147805102	+	Missense_Mutation	SNP	C	C	T	rs144744644	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FBXO38-231	NM_001271723	exon14	c.C1756T	p.R586C	CTTCAGCGTGTAG	.	160	75	135	0	C|1.000;T|0.000	32	20	12	0	0	5
PDGFRB	5159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149510124	149510124	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PDGFRB-1499	NM_002609	exon9	c.T1345C	p.S449P	AGGCAGACCAGAT	.	64	27	49	0	.	75	74	0	1	0	5
GALNT10	55568	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	153760166	153760166	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GALNT10-92	NM_198321	exon6	c.913delA	p.K305fs	CTGCAGAAAGCTG	.	129	61	88	0	.	0	0	0	0	0	3
LARP1	23367	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	154173383	154173383	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LARP1-94	NM_015315	exon6	c.661delC	p.P221fs	TACGTGCCCGTGG	.	115	45	85	0	.	0	0	0	0	0	3
LARP1	23367	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	154173390	154173390	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LARP1-94	NM_015315	exon6	c.668delC	p.A223fs	CCGTGGCCCCCCC	.	118	46	81	0	.	0	0	0	0	0	3
CNOT8	9337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	154254927	154254927	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNOT8-90	NM_004779	exon7	c.G807A	p.K269K	CCAGAAGCAGAAT	.	100	40	80	0	.	119	61	58	0	0	5
EBF1	1879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	158140042	158140042	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EBF1-92	NM_024007	exon13	c.C1305T	p.G435G	ATTCACGCCCATC	.	209	80	195	0	.	13	9	4	0	0	5
TENM2	57451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	166711961	166711961	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001122679	exon1	c.A119G	p.Y40C	AATCCTACAGCTC	.	265	106	212	0	.	3	1	2	0	0	5
TENM2	57451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	167617506	167617506	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001122679	exon14	c.A2707T	p.K903X	GCAGGCAAGGATA	.	262	108	220	0	.	0	0	0	0	0	5
SLIT3	6586	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	168201335	168201335	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLIT3-95	NM_001271946	exon13	c.G1200A	p.Q400Q	CAGGTCCTGAAAC	.	247	95	156	2	.	90	44	46	0	0	3
UBTD2	92181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	171661284	171661284	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBTD2-90	NM_152277	exon2	c.T149C	p.L50P	CTGCGTAGTTGTC	.	131	59	114	0	.	12	7	5	0	0	5
MSX2	4488	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	174152037	174152037	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MSX2-90	NM_002449	exon1	c.G375A	p.P125P	GCCGCCGCCAAGT	.	297	144	186	0	.	0	0	0	0	0	4
CLTB	1212	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	175824632	175824632	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLTB-90	NM_001834	exon4	c.T440C	p.V147A	TTCTCTACTTGTT	.	83	37	61	0	.	992	445	546	1	0	4
AGXT2L2	85007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	177649506	177649506	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AGXT2L2-91	NM_153373	exon8	c.C777A	p.F259L	GGCCCAGAAGTGC	.	434	189	368	1	.	8	7	1	0	0	5
ZNF454	285676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178392351	178392351	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF454-93	NM_001178089	exon5	c.A946G	p.T316A	CACCTTACCAAAC	.	67	24	52	0	.	0	0	0	0	0	5
ZNF354C	30832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178507040	178507040	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF354C-91	NM_014594	exon5	c.G1607A	p.S536N	TCTGCAGCTCCTC	.	113	50	104	0	.	3	2	1	0	0	5
OR2V2	285659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180582175	180582175	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2V2-69	NM_206880	exon1	c.A233C	p.N78T	GTACCAATGTGCC	.	190	69	143	0	.	0	0	0	0	0	5
SERPINB1	1992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	2836398	2836398	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SERPINB1-292	NM_030666	exon5	c.T511C	p.W171R	CCTTCCAGTTTCC	.	70	28	66	0	.	25	8	17	0	0	5
FARS2	10667	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	5369294	5369294	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FARS2-90	NM_006567	exon2	c.T491C	p.L164P	ACTTGCTGCACGC	.	136	60	96	1	.	23	14	9	0	0	4
DSP	1832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	7585739	7585739	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DSP-518	NM_004415	exon24	c.A8244G	p.E2748E	CACCGAAGAAGCC	.	367	144	271	2	.	22	5	17	0	0	3
BMP6	654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	7880448	7880448	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BMP6-578	NM_001718	exon7	c.T1414C	p.Y472H	CCCGAGTATGTCC	.	289	111	217	0	.	5	5	0	0	0	5
BLOC1S5	63915	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	8041439	8041439	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_201280	exon3	c.A258G	p.T86T	TTCATTTGTTTCA	.	76	41	47	1	.	20	10	10	0	0	3
KDM1B	221656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	18215282	18215282	+	Silent	SNP	C	C	T	rs144521010	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KDM1B-91	NM_153042	exon16	c.C1458T	p.V486V	GGCTGTCGCATCC	.	99	30	49	0	C|0.998;T|0.002	57	28	29	0	0	4
ZSCAN26	7741	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28244219	28244219	+	Silent	SNP	T	T	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_152736	exon4	c.T381G	p.S127S	CGAGTCTGATGTG	.	116	44	78	1	.	8	2	6	0	0	3
C6orf15	29113	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31079664	31079664	+	Missense_Mutation	SNP	C	C	T	rs147112509	unknown;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C6orf15-90	NM_014070	exon2	c.G472A	p.D158N	TGGCATCGGGAGA	.	125	57	83	1	C|1.000;G|0.000	0	0	0	0	0	3
CCHCR1	54535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31112778	31112778	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCHCR1-91	NM_001105564	exon14	c.C1949T	p.S650F	GCCAGGGACTCCT	.	64	23	56	0	.	27	15	12	0	0	5
VARS	7407	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	31747403	31747403	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VARS-93	NM_006295	exon27	c.3270delC	p.P1090fs	CGGGTAGGGGGTA	.	127	58	77	0	.	0	0	0	0	0	3
TNXB	7148	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32012914	32012914	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNXB-90	NM_019105	exon32	c.C10790T	p.A3597V	AGCAAGGCCTGGG	.	452	95	354	2	.	78	59	19	0	0	4
HLA-DOB	3112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	32782355	32782355	+	Missense_Mutation	SNP	G	G	A	rs201263357	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HLA-DOB-91	NM_002120	exon3	c.C385T	p.P129S	TCTCTGGGTACAC	.	163	58	137	0	.	3	3	0	0	0	4
TAP1	6890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32820954	32820954	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TAP1-91	NM_000593	exon1	c.T640C	p.W214R	TGTGCCACAGGGC	.	145	59	86	0	.	37	26	11	0	0	5
ZBTB22	9278	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33283545	33283545	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZBTB22-69	NM_001145338	exon2	c.C1149A	p.D383E	GCCAAAGTCATTG	.	87	42	66	1	.	29	20	9	0	0	4
KIFC1	3833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33373046	33373046	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIFC1-90	NM_002263	exon7	c.G1174A	p.A392T	GAGATTGCCATGC	.	84	34	91	0	.	32	25	7	0	0	5
CUTA	51596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33385290	33385290	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CUTA-90	NM_001014433	exon2	c.C282T	p.C94C	GTTGGGGCAAGTA	.	162	82	146	0	.	790	507	281	0	2	5
CUTA	51596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33385455	33385455	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CUTA-90	NM_001014433	exon2	c.T117C	p.S39S	AACAAAAGACAGG	.	74	29	55	0	.	484	199	285	0	0	5
ITPR3	3710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33657170	33657170	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITPR3-1085	NM_002224	exon50	c.A6850T	p.I2284F	CTCAACATCCTGG	.	82	35	48	0	.	19	4	15	0	0	5
ANKS1A	23294	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	34951143	34951143	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKS1A-94	NM_015245	exon7	c.953delC	p.T318fs	ATAAAACCCCCCC	.	26	11	44	0	.	0	0	0	0	0	3
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38840860	38840860	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DNAH8-615	NM_001206927	exon51	c.G7416A	p.T2472T	TGCCACGGTTTCT	.	138	55	87	0	.	1	1	0	0	0	5
NFYA	4800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41060791	41060791	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NFYA-226	NM_002505	exon8	c.A855G	p.L285L	TAAACTAGAGGCA	.	117	46	132	0	.	22	7	15	0	0	5
UBR2	23304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42610157	42610157	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UBR2-94	NM_015255	exon18	c.T2035A	p.Y679N	TAGATTTATTACT	.	32	18	23	0	.	0	0	0	0	0	5
GLTSCR1L	23506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42797332	42797332	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_015349	exon5	c.A1261G	p.N421D	ACTATAAATGGGC	.	112	44	110	0	.	18	9	9	0	0	5
GTPBP2	54676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43592287	43592287	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GTPBP2-92	NM_019096	exon7	c.G1060A	p.D354N	CGGCATCATCCTC	.	88	44	74	0	.	53	23	30	0	0	5
SLC35B2	347734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44223336	44223336	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC35B2-91	NM_178148	exon4	c.C406T	p.R136C	AGCTGCGGGTCAT	.	103	38	60	0	.	102	60	42	0	0	5
TDRD6	221400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46658119	46658119	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TDRD6-138	NM_001168359	exon1	c.A2254T	p.M752L	CCTCTTATGCAGA	.	72	25	52	0	.	0	0	0	0	0	5
C6orf141	135398	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	49518618	49518618	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145652	exon1	c.G113A	p.R38H	TAGGGCGCGGGGC	.	51	26	31	0	.	0	0	0	0	0	4
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51695744	51695744	+	Silent	SNP	A	A	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKHD1-603	NM_170724	exon52	c.T8217G	p.P2739P	TGTTTCAGGGAGG	.	100	39	89	0	.	0	0	0	0	0	5
ELOVL5	60481	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	53140004	53140004	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ELOVL5-90	NM_001242828	exon6	c.C461A	p.T154N	AAGAAAGTGTCCA	.	216	74	185	1	.	301	179	122	0	0	4
MLIP	90523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	53883833	53883833	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLIP-99	NM_138569	exon1	c.C7T	p.L3F	ATGGAACTTGAAA	.	145	58	145	0	.	0	0	0	0	0	5
HMGCLL1	54511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	55304258	55304258	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HMGCLL1-94	NM_019036	exon9	c.A985T	p.M329L	TAAGCATATATAT	.	80	35	90	0	.	0	0	0	0	0	5
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56371582	56371582	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DST-523	NM_015548	exon57	c.A11376G	p.I3792M	TTCCCTTATGGTC	.	90	39	62	0	.	0	0	0	0	0	5
FAM135A	57579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	71138076	71138076	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM135A-90	NM_001162529	exon2	c.T31A	p.S11T	GAATTCTCTGTGG	.	44	20	45	0	.	2	1	1	0	0	5
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	72960679	72960679	+	Missense_Mutation	SNP	A	A	G	rs201901272	unknown;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RIMS1-144	NM_014989	exon14	c.A2428G	p.N810D	AAATGGAATCAAA	.	139	63	111	0	A|0.999;T|0.000	0	0	0	0	0	5
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	72968725	72968725	+	Silent	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RIMS1-144	NM_014989	exon18	c.T2964A	p.R988R	GTCACGTTCTCCA	.	108	54	74	0	.	0	0	0	0	0	5
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	73000437	73000437	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RIMS1-144	NM_014989	exon25	c.C3610T	p.Q1204X	ACTGATCAGCCAG	.	122	47	115	0	.	0	0	0	0	0	5
SENP6	26054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	76380283	76380283	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SENP6-660	NM_015571	exon11	c.T1239C	p.I413I	TTCTATTATCAAC	.	46	19	30	0	.	25	15	10	0	0	5
HMGN3	9324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	79913320	79913320	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HMGN3-226	NM_001201362	exon4	c.A124T	p.K42X	TTGGTTTGGGTTC	.	85	37	62	0	.	260	205	55	0	0	5
DOPEY1	23033	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	83849997	83849997	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DOPEY1-155	NM_015018	exon23	c.A5290G	p.I1764V	CTCTCAATCCTTC	.	103	40	91	1	.	1	1	0	0	0	3
ZNF292	23036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	87967774	87967774	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF292-72	NM_015021	exon8	c.C4427T	p.T1476I	GTGTGACTAACTT	.	74	31	101	0	.	12	7	5	0	0	5
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90377855	90377855	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MDN1-100	NM_014611	exon84	c.A13972G	p.K4658E	ATTCTTTGGGCAA	.	44	19	61	0	.	9	1	8	0	0	5
SOBP	55084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	107811894	107811894	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SOBP-91	NM_018013	exon1	c.G74A	p.R25K	TGAAAAGGGAGAT	.	131	58	99	0	.	2	1	1	0	0	5
MICAL1	64780	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	109773753	109773753	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MICAL1-154	NM_001159291	exon5	c.G637A	p.V213I	TAAGGACGTCAAA	.	211	76	153	1	.	4	2	2	0	0	4
ZBTB24	9841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	109798048	109798048	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZBTB24-92	NM_014797	exon3	c.C1038T	p.G346G	CCGCTCGCCTGTG	.	146	53	93	0	.	3	3	0	0	0	5
HS3ST5	222537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	114378976	114378976	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HS3ST5-92	NM_153612	exon2	c.A486G	p.T162T	CTCCTCTGTGATA	.	103	54	92	0	.	0	0	0	0	0	5
ROS1	6098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	117665330	117665330	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ROS1-1353	NM_002944	exon27	c.A4417G	p.T1473A	GGTTTGTCTTGGC	.	199	84	135	0	.	0	0	0	0	0	5
C6orf170	221322	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	121427246	121427246	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C6orf170-92	NM_152730	exon30	c.T3388C	p.Y1130H	CAATATAATGGGT	.	180	69	190	2	.	3	2	1	0	0	3
HEY2	23493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	126080476	126080476	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HEY2-658	NM_012259	exon5	c.A542G	p.H181R	CGCTCCACCCGCA	.	69	31	56	0	.	2	2	0	0	0	5
CENPW	387103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	126667370	126667370	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CENPW-90	NM_001012507	exon2	c.T146G	p.L49R	GTTTACTGTTTGT	.	83	39	71	0	.	72	39	33	0	0	5
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	129204502	129204502	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LAMA2-162	NM_000426	exon1	c.G112C	p.G38R	CAAAGAGGTACAG	.	134	58	68	0	.	0	0	0	0	0	5
ARHGAP18	93663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	129950582	129950582	+	Silent	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ARHGAP18-230	NM_033515	exon5	c.A702T	p.V234V	AAATGATACCTCC	.	59	30	43	0	.	53	29	24	0	0	5
MOXD1	26002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	132645213	132645213	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MOXD1-515	NM_015529	exon7	c.A970T	p.R324W	ATAACCTCAGTCC	.	131	42	110	0	.	2	1	1	0	0	5
IL20RA	53832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	137329836	137329836	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IL20RA-94	NM_014432	exon5	c.G624A	p.L208L	CGGCTCCAGCCAG	.	108	36	79	0	.	9	5	4	0	0	5
REPS1	85021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	139237076	139237076	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	REPS1-522	NM_031922	exon14	c.C1636G	p.P546A	GAGGTGGTGGTGC	.	173	90	87	0	.	64	35	29	0	0	5
HECA	51696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	139488123	139488123	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HECA-90	NM_016217	exon2	c.G974A	p.S325N	ATTACAGCCCTGC	.	33	14	29	0	.	5	4	1	0	0	5
HIVEP2	3097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	143074762	143074762	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIVEP2-95	NM_006734	exon10	c.C6823A	p.P2275T	CATAGGGGTCCTT	.	81	40	83	0	.	12	9	3	0	0	5
UTRN	7402	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	145160331	145160331	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UTRN-95	NM_007124	exon71	c.A10088G	p.N3363S	GAATCAATGGTGT	.	31	10	28	0	.	26	13	13	0	0	4
SHPRH	257218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146214396	146214396	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SHPRH-92	NM_173082	exon28	c.A4841G	p.H1614R	AGCTCATGGGCAG	.	155	72	95	0	.	8	7	1	0	0	5
SHPRH	257218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	146248371	146248371	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SHPRH-92	NM_173082	exon15	c.G3182A	p.R1061H	GAGGAGCGCAACA	.	47	7	53	0	.	3	3	0	0	0	4
AKAP12	9590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	151672050	151672050	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AKAP12-293	NM_005100	exon4	c.G2524T	p.D842Y	GACTCTGATGTCC	.	317	131	243	1	.	4	4	0	0	0	4
AKAP12	9590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	151673402	151673402	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AKAP12-293	NM_005100	exon4	c.A3876G	p.I1292M	AGGCATAACAGTC	.	239	107	137	0	.	3	3	0	0	0	5
CNKSR3	154043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	154732089	154732089	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNKSR3-26	NM_173515	exon11	c.A1258T	p.R420X	TCTCTCTCATTTT	.	113	40	110	0	.	4	4	0	0	0	5
CNKSR3	154043	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	154732101	154732101	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNKSR3-26	NM_173515	exon11	c.C1246T	p.P416S	TTGTGGGCAGAAT	.	126	48	109	0	.	1	1	0	0	0	4
SYTL3	94120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159166688	159166688	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SYTL3-90	NM_001242384	exon13	c.T1032A	p.N344K	GTGCAATCCGTAA	.	41	15	44	0	.	0	0	0	0	0	5
LPA	4018	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	161006174	161006174	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LPA-74	NM_005577	exon27	c.G4193A	p.G1398D	AGTGTGCCTCGAT	.	311	141	225	2	.	0	0	0	0	0	3
MAP3K4	4216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	161510389	161510389	+	Silent	SNP	G	G	A	rs186715923	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAP3K4-548	NM_006724	exon11	c.G2859A	p.A953A	GTCTGCGCATCTC	.	89	29	63	0	G|0.999;A|0.000	6	6	0	0	0	5
QKI	9444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	163984721	163984721	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	QKI-290	NM_206853	exon6	c.G904C	p.E302Q	ATCCTTGAGTATC	.	82	39	95	0	.	79	45	34	0	0	5
C6orf118	168090	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	165703533	165703533	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C6orf118-90	NM_144980	exon7	c.G1144A	p.D382N	TTTCATCAATTAT	.	32	4	28	0	.	0	0	0	0	0	3
FGFR1OP	11116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167417212	167417212	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FGFR1OP-683	NM_007045	exon4	c.T213C	p.G71G	TATAGGTCGTTTA	.	53	23	47	0	.	0	0	0	0	0	5
CCR6	1235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167549924	167549924	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCR6-227	NM_004367	exon3	c.T206A	p.I69N	TGGTGATCACCTT	.	199	76	160	0	.	1	1	0	0	0	5
CCR6	1235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167550007	167550007	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCR6-227	NM_004367	exon3	c.C289G	p.L97V	TTTGTTCTTACTC	.	141	56	131	0	.	0	0	0	0	0	5
THBS2	7058	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	169622343	169622343	+	Silent	SNP	C	C	T	rs149118318	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	THBS2-95	NM_003247	exon20	c.G3222A	p.T1074T	CTCGCCCGTCCCC	.	107	45	77	0	C|1.000;T|0.000	2	2	0	0	0	4
THBS2	7058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	169648601	169648601	+	Missense_Mutation	SNP	C	C	T	rs144458205	unknown;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	THBS2-95	NM_003247	exon4	c.G520A	p.A174T	CCAGAGCGAAGCT	.	182	65	145	0	C|1.000;A|0.000	0	0	0	0	0	5
PSMB1	5689	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	170846402	170846402	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PSMB1-91	NM_002793	exon5	c.C460T	p.P154S	CTACTGGATCAAA	.	111	46	86	1	.	359	213	145	0	1	3
PSMB1	5689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	170862286	170862286	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PSMB1-91	NM_002793	exon1	c.G45T	p.L15F	CATCCCCAAGTCT	.	59	25	63	0	.	1	1	0	0	0	5
GPR146	115330	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	1097616	1097616	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR146-91	NM_138445	exon1	c.G465A	p.A155A	TGGCGCGCTGCTG	.	119	57	59	0	.	2	2	0	0	0	4
ELFN1	392617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	1784587	1784587	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001128636	exon2	c.C355T	p.R119W	TACAACCGGCTGC	.	146	59	125	0	.	0	0	0	0	0	5
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4285348	4285348	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SDK1-138	NM_152744	exon44	c.G6292A	p.D2098N	TACTCAGACGAGG	.	155	54	102	0	.	2	2	0	0	0	5
SLC29A4	222962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	5330852	5330852	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC29A4-515	NM_153247	exon4	c.C399A	p.H133Q	CCTGCACACCAGG	.	96	44	83	0	.	2	0	2	0	0	5
GLCCI1	113263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	8124630	8124630	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GLCCI1-90	NM_138426	exon7	c.G1281A	p.K427K	AGTGAAGGTCTTT	.	132	49	120	0	.	4	3	1	0	0	5
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	18625005	18625005	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HDAC9-227	NM_001204144	exon5	c.C250T	p.R84C	GTTGTCCGTGAGA	.	159	74	115	0	.	1	1	0	0	0	5
MACC1	346389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	20180768	20180768	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MACC1-93	NM_182762	exon7	c.C2360A	p.P787H	TAGGCAGGTTTCC	.	21	7	13	0	.	0	0	0	0	0	4
DFNA5	1687	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	24738664	24738664	+	Nonsense_Mutation	SNP	A	A	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DFNA5-91	NM_001127453	exon10	c.T1472G	p.L491X	CTGCCTAAAGCAC	.	226	90	168	1	.	95	92	3	0	0	3
TRIL	9865	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	28996482	28996482	+	exonic	DEL	G	G	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	.	.	.	.	AGGGCCGGGGGGT	.	71	32	32	0	.	0	0	0	0	0	3
ADCYAP1R1	117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	31117638	31117638	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADCYAP1R1-91	NM_001118	exon4	c.T190G	p.W64G	ACGTGTTGGAAGC	.	329	124	266	1	.	2	2	0	0	0	5
ANLN	54443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	36450230	36450230	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANLN-517	NM_018685	exon6	c.C1204T	p.P402S	ATTACTCCAAATA	.	154	57	111	0	.	35	16	19	0	0	5
POU6F2	11281	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	39243895	39243895	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	POU6F2-90	NM_007252	exon4	c.G252A	p.Q84Q	CAGTCAGACCCAC	.	109	38	91	1	.	0	0	0	0	0	4
NACAD	23148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45124123	45124123	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001146334	exon2	c.A1656G	p.E552E	GCTTGTTTCTTCC	.	157	63	117	0	.	0	0	0	0	0	5
NACAD	23148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45124945	45124945	+	Silent	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001146334	exon2	c.C834A	p.S278S	GAGGCTGGACTCA	.	126	52	115	0	.	0	0	0	0	0	5
NACAD	23148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45124952	45124952	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001146334	exon2	c.C827G	p.S276C	GACTCAGAGGACG	.	120	50	107	0	.	0	0	0	0	0	5
NACAD	23148	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	7	45125542	45125542	+	Silent	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001146334	exon2	c.A237T	p.A79A	CGAGGGTGCCCCA	.	67	21	11	0	.	0	0	0	0	0	3
TBRG4	9238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45144212	45144212	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBRG4-90	NM_001261834	exon4	c.G865A	p.A289T	AGATGGCCCGCAG	.	331	151	243	0	.	91	45	44	0	2	5
IGFBP3	3486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45954540	45954540	+	Missense_Mutation	SNP	C	C	T	rs17847676	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGFBP3-1009	NM_001013398	exon4	c.G773A	p.R258H	GAAGGGCGACACT	.	124	45	92	0	.	0	0	0	0	0	5
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47983029	47983029	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKD1L1-145	NM_138295	exon2	c.T124C	p.C42R	AGCTGCACAGATG	.	343	138	271	0	.	1	1	0	0	0	5
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48311465	48311465	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ABCA13-521	NM_152701	exon17	c.A2202G	p.L734L	TCTTTTATCATTT	.	69	34	79	0	.	0	0	0	0	0	5
COBL	23242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	51096471	51096471	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COBL-95	NM_015198	exon10	c.C2322T	p.N774N	CACAGAGTTGCAC	.	88	36	59	0	.	0	0	0	0	0	5
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	70255628	70255628	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AUTS2-92	NM_015570	exon19	c.G3426A	p.E1142E	GCGGGAGCACGAG	.	113	49	53	0	.	18	11	7	0	0	4
TBL2	26608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	72985169	72985169	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBL2-90	NM_012453	exon7	c.G1012A	p.A338T	AGAGGGCCAGGCG	.	58	23	32	0	.	40	23	17	0	0	5
KIAA1324L	222223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86537770	86537770	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1324L-97	NM_001142749	exon17	c.T2449C	p.F817L	TATAAAAGAAATG	.	46	17	33	0	.	0	0	0	0	0	5
CROT	54677	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86998758	86998758	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CROT-280	NM_001143935	exon8	c.T698C	p.V233A	TTGATGTAATACA	.	143	57	116	1	.	11	1	10	0	0	4
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	88963113	88963113	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF804B-101	NM_181646	exon4	c.A817G	p.T273A	AAAGATACACACC	.	131	66	121	0	.	0	0	0	0	0	5
PEX1	5189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92134188	92134188	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PEX1-91	NM_000466	exon12	c.C1929T	p.T643T	CTCTAGGGTTTTT	.	64	22	62	0	.	11	7	4	0	0	5
ZNF394	84124	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99091800	99091800	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF394-90	NM_032164	exon3	c.1038delT	p.F346fs	GGTCTCAAAAAGG	.	242	107	192	0	.	0	0	0	0	0	3
FAM200A	221786	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99144838	99144839	+	Frame_Shift_Del	DEL	AT	AT	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM200A-90	NM_145111	exon2	c.1192_1193del	p.398_398del	GGAAACATATAGT	.	108	39	70	0	.	0	0	0	0	0	3
TRIM4	89122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99507254	99507254	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRIM4-227	NM_033017	exon3	c.C501T	p.L167L	GGCCACGAGATTA	.	182	76	140	0	.	50	22	28	0	0	4
COPS6	10980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99688715	99688715	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COPS6-658	NM_006833	exon7	c.C589T	p.R197C	GCGGAACGCATTG	.	146	14	105	0	.	248	231	17	0	0	4
EPHB4	2050	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100417182	100417182	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPHB4-1446	NM_004444	exon6	c.G1294T	p.E432X	CACCCTCTCGGTC	.	146	55	100	1	.	0	0	0	0	0	4
ACHE	43	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	100490017	100490017	+	Silent	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACHE-92	NM_000665	exon3	c.G1491T	p.T497T	CTCTGCCGTGTAG	.	126	8	89	0	.	5	5	0	0	0	3
NAPEPLD	222236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	102760123	102760123	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NAPEPLD-227	NM_001122838	exon3	c.842delT	p.F281fs	CCTGCGAAAAAAA	.	57	31	38	0	.	0	0	0	0	0	3
ATXN7L1	222255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	105255170	105255170	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATXN7L1-90	NM_020725	exon10	c.C1611T	p.N537N	ACTGGGGTTGCTG	.	136	53	117	0	.	2	0	2	0	0	5
PIK3CG	5294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	106508801	106508801	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIK3CG-1316	NM_002649	exon2	c.A795G	p.Q265Q	AAGCCAAAGCGAA	.	86	35	77	0	.	1	1	0	0	0	5
COG5	10466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	106844034	106844034	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COG5-93	NM_006348	exon22	c.A2510G	p.E837G	TTGCCTTCTCTAC	.	80	32	75	0	.	44	22	22	0	0	5
DUS4L	11062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107217974	107217974	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DUS4L-90	NM_001270419	exon8	c.T923C	p.I308T	CAATCATAGATTA	.	116	47	125	0	.	6	3	3	0	0	5
LAMB4	22798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107696427	107696427	+	Silent	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LAMB4-140	NM_007356	exon25	c.C3405A	p.T1135T	CTTCTGGGTACCT	.	91	45	68	0	.	0	0	0	0	0	5
PNPLA8	50640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	108112846	108112846	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PNPLA8-135	NM_001256008	exon10	c.G2348A	p.X783X	ACTCATCACAATT	.	259	94	210	0	.	62	30	32	0	0	5
LRRN3	54674	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	110764462	110764462	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRN3-154	NM_018334	exon2	c.C1634T	p.S545F	CAAGTTCTAAAAT	.	66	37	51	1	.	0	0	0	0	0	3
MDFIC	29969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	114655908	114655908	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MDFIC-91	NM_199072	exon5	c.T987C	p.C329C	GGACTGTGGCATC	.	113	45	89	0	.	10	3	7	0	0	5
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	121608015	121608015	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTPRZ1-699	NM_001206838	exon3	c.T135A	p.N45K	ACTGAATCAAAAA	.	130	58	104	0	.	0	0	0	0	0	5
GPR37	2861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	124404170	124404170	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR37-523	NM_005302	exon1	c.C861T	p.C287C	GTTGTGGCACACG	.	162	58	127	0	.	0	0	0	0	0	5
GRM8	2918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	126086177	126086177	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GRM8-581	NM_001127323	exon10	c.A2680G	p.K894E	ATGACTTACTGTT	.	150	71	117	0	.	0	0	0	0	0	5
IMPDH1	3614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128038611	128038611	+	Missense_Mutation	SNP	C	C	T	rs121912550	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IMPDH1-230	NM_000883	exon10	c.G931A	p.D311N	TCAGGTCGGTGCG	.	118	54	91	0	.	15	9	6	0	0	5
IRF5	3663	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	128585921	128585921	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IRF5-226	NM_001098627	exon3	c.A218T	p.K73I	CAGGGAAATACAC	.	142	66	122	1	.	0	0	0	0	0	3
LRGUK	136332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	133842788	133842788	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRGUK-227	NM_144648	exon6	c.G671A	p.G224D	GTATAGGCAATGA	.	114	37	85	0	.	0	0	0	0	0	5
NUP205	23165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135262571	135262571	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NUP205-207	NM_015135	exon6	c.C676T	p.Q226X	TGCAGGCAGTCTC	.	108	44	57	0	.	5	5	0	0	0	5
TBXAS1	6916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139655387	139655387	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TBXAS1-155	NM_001166253	exon8	c.A810G	p.R270R	CCCCAGACCTATC	.	75	30	43	0	.	2	2	0	0	0	5
DENND2A	27147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	140246681	140246681	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DENND2A-138	NM_015689	exon11	c.T2096A	p.M699K	CTTCTCATGAGTG	.	182	73	150	0	.	4	4	0	0	0	5
AGK	55750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141333740	141333740	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AGK-290	NM_018238	exon10	c.C628T	p.R210X	GGCCTTCGATGGG	.	84	35	74	0	.	28	27	1	0	0	5
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141736707	141736707	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MGAM-70	NM_004668	exon18	c.C2161T	p.P721S	CTATTGCCCTACC	.	104	48	107	0	.	0	0	0	0	0	5
MGAM	8972	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141805626	141805626	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MGAM-70	NM_004668	exon48	c.G5509A	p.D1837N	AGCATCGATGTGA	.	80	30	95	1	.	3	2	1	0	0	3
EPHB6	2051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142562373	142562373	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPHB6-1489	NM_004445	exon7	c.G815A	p.G272E	AGGATGGAGTAGG	.	102	26	53	0	.	1	1	0	0	0	5
EPHA1	2041	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	143088818	143088818	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EPHA1-1436	NM_005232	exon17	c.G2747A	p.R916Q	ACGGTTCGATATG	.	136	8	116	0	.	0	0	0	0	0	3
OR2F2	135948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143632752	143632752	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2F2-94	NM_001004685	exon1	c.A427G	p.R143G	TGTGCTAGGTTGG	.	342	136	273	1	.	0	0	0	0	0	5
SSPO	23145	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	149493469	149493469	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_198455	exon44	c.G6545A	p.R2182K	TCCCCAGAAACTG	.	165	72	135	1	.	0	0	0	0	0	3
SSPO	23145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	149508059	149508059	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_198455	exon66	c.9453delC	p.Y3151fs	CCTCTACCCCCCG	.	83	32	58	0	.	0	0	0	0	0	3
LRRC61	65999	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150034194	150034194	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC61-90	NM_023942	exon2	c.G244A	p.V82I	CTCAATGTCTCCA	.	97	34	60	1	.	0	0	0	0	0	4
REPIN1	29803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150069842	150069842	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	REPIN1-69	NM_001099695	exon3	c.G1683A	p.S561S	GGTGTCGCACCGG	.	149	64	48	0	.	59	33	26	0	0	5
GIMAP8	155038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150174335	150174335	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GIMAP8-95	NM_175571	exon5	c.G1465A	p.V489M	CAGGAGGTGGTGG	.	212	83	162	0	.	1	1	0	0	0	5
SLC4A2	6522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150771569	150771569	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC4A2-90	NM_003040	exon18	c.T2874C	p.Y958Y	CACCTATACCCAG	.	90	39	91	0	.	0	0	0	0	0	5
SHH	6469	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	7	155596348	155596348	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SHH-1134	NM_000193	exon3	c.C635T	p.T212I	AGCTTGGTGCCGC	.	81	36	15	0	.	0	0	0	0	0	3
VIPR2	7434	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	158829448	158829448	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VIPR2-91	NM_003382	exon7	c.G743C	p.G248A	CCCCATCCGATCA	.	148	56	111	1	.	0	0	0	0	0	3
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10465815	10465815	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RP1L1-139	NM_178857	exon4	c.C5793T	p.D1931D	TGGCTCGTCCTCC	.	26	18	40	0	.	0	0	0	0	0	5
SLC35G5	83650	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	11189624	11189624	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_054028	exon1	c.G1009A	p.E337K	AAGGTGGAGGAGT	.	60	21	102	0	.	0	0	0	0	0	4
LONRF1	91694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	12580711	12580711	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LONRF1-91	NM_152271	exon12	c.T2216C	p.V739A	GGGTCTACAGGGA	.	51	37	105	0	.	4	2	2	0	0	5
LZTS1	11178	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	20110358	20110358	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LZTS1-91	NM_021020	exon2	c.A1084G	p.K362E	TGAGCTTGGTCTC	.	73	63	92	1	.	5	4	1	0	0	3
NEFM	4741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	24775356	24775356	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NEFM-577	NM_005382	exon3	c.A1988G	p.E663G	TGGAAGAGAAAGG	.	175	132	222	0	.	2	1	1	0	0	5
DOCK5	80005	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	25191625	25191625	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DOCK5-71	NM_024940	exon21	c.C2105T	p.S702L	TTATTTCACTGAT	.	60	47	84	2	.	0	0	0	0	0	4
CDCA2	157313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	25364499	25364499	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDCA2-90	NM_152562	exon15	c.G2317A	p.A773T	GGAGCTGCAGAAG	.	43	38	50	0	.	6	0	6	0	0	5
KIF13B	23303	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	28929234	28929234	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIF13B-22	NM_015254	exon39	c.C5121T	p.V1707V	CACGGTGACGAAC	.	107	87	93	1	.	0	0	0	0	0	3
NRG1	3084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	32620757	32620757	+	Silent	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NRG1-525	NM_013960	exon12	c.A1290T	p.L430L	TGAGCTAAGGAGA	.	106	79	150	0	.	0	0	0	0	0	5
GOT1L1	137362	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	37792696	37792696	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GOT1L1-23	NM_152413	exon8	c.C967T	p.L323L	TGGTTAGCATGAT	.	62	49	119	1	.	0	0	0	0	0	4
STAR	6770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	38003893	38003893	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STAR-91	NM_000349	exon4	c.G379T	p.D127Y	GCTGGTCCACCAC	.	48	36	73	0	.	4774	11	4753	4	6	5
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	41566384	41566384	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANK1-716	NM_001142446	exon17	c.C2009T	p.T670M	AGGGGCGTCACAC	.	65	47	93	0	.	1	0	1	0	0	5
PRKDC	5591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	48689404	48689404	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRKDC-1515	NM_001081640	exon85	c.12088+1G>A	.	ATCTTACCAAGTA	.	31	21	58	0	.	1	0	1	0	0	4
ST18	9705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	53044610	53044610	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ST18-95	NM_014682	exon22	c.C2574T	p.S858S	TTTCCAGGAGAGG	.	121	90	217	0	.	0	0	0	0	0	5
IMPAD1	54928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	57905818	57905818	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IMPAD1-91	NM_017813	exon1	c.C327T	p.G109G	CACGTCGCCGCTG	.	29	21	36	0	.	32	2	30	0	0	5
SGK3	23678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	67755735	67755735	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SGK3-1003	NM_001033578	exon14	c.G1027A	p.D343N	ACTGTAGATTGGT	.	78	60	97	0	.	7	0	7	0	0	5
PRDM14	63978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	70981595	70981595	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRDM14-93	NM_024504	exon2	c.C501T	p.S167S	TAACTGGGAGGTC	.	140	114	194	0	.	0	0	0	0	0	5
NCOA2	10499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	71057034	71057034	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NCOA2-639	NM_006540	exon13	c.G2655A	p.Q885Q	TAAATTCTGGTTT	.	116	91	212	1	.	9	1	8	0	0	4
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	72977700	72977700	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRPA1-230	NM_007332	exon4	c.G538A	p.A180T	GCAATGCTTCGCT	.	98	84	164	0	.	0	0	0	0	0	5
KCNB2	9312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	73848647	73848647	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KCNB2-158	NM_004770	exon3	c.G1057A	p.V353I	AGCCTGGTATTTT	.	96	68	135	0	.	0	0	0	0	0	5
WWP1	11059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87443898	87443898	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WWP1-659	NM_007013	exon14	c.A1527C	p.E509D	TCGTGAAGGTGTA	.	141	112	250	0	.	18	1	17	0	0	5
OSGIN2	734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	90937358	90937358	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OSGIN2-68	NM_001126111	exon6	c.A1248G	p.L416L	TCTTTTATCTGAT	.	41	30	78	0	.	9	2	7	0	0	5
RUNX1T1	862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	93023263	93023263	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RUNX1T1-1196	NM_001198679	exon5	c.C702T	p.F234F	CAGTGGGAAGTTA	.	62	42	120	0	.	0	0	0	0	0	5
RUNX1T1	862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	93029539	93029539	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RUNX1T1-1196	NM_001198679	exon3	c.G318A	p.T106T	AGATTGCGTCTTC	.	107	79	143	1	.	0	0	0	0	0	5
RNF19A	25897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	101299882	101299882	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RNF19A-229	NM_015435	exon3	c.T521C	p.I174T	CAACTAATATTAA	.	50	42	61	0	.	9	1	8	0	0	5
PKHD1L1	93035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110457219	110457219	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKHD1L1-145	NM_177531	exon38	c.T5121A	p.Y1707X	GAATTATACGGCC	.	80	56	141	1	.	0	0	0	0	0	4
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	114110996	114110996	+	Silent	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CSMD3-1132	NM_052900	exon5	c.A906T	p.P302P	GGTAGGTGGCTCA	.	60	49	63	0	.	0	0	0	0	0	5
KIAA0196	9897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	126067843	126067843	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA0196-92	NM_014846	exon17	c.G2087T	p.G696V	ATGATGCCAACCA	.	47	37	99	0	.	0	0	0	0	0	5
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133900673	133900673	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TG-145	NM_003235	exon10	c.G2621A	p.G874D	TAAATGGCCAACT	.	100	80	128	0	.	1	0	1	0	0	5
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	134146920	134146920	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TG-145	NM_003235	exon48	c.A8189G	p.D2730G	TTTCAGATGGAGC	.	46	31	69	0	.	0	0	0	0	0	5
ZFAT	57623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	135621018	135621018	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFAT-90	NM_020863	exon5	c.T739C	p.Y247H	TGGCGTATTCCTG	.	119	99	129	0	.	3	0	3	0	0	5
PTK2	5747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	141749130	141749130	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTK2-1517	NM_005607	exon21	c.C1878T	p.D626D	CCATACGTCACTA	.	30	20	36	0	.	61	7	54	0	0	5
KIFC2	90990	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	145697998	145697998	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIFC2-92	NM_145754	exon16	c.C1770T	p.A590A	CGCCGCCACCGCC	.	29	17	12	0	.	6	0	6	0	0	3
FOXH1	8928	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	145699949	145699949	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FOXH1-226	NM_003923	exon3	c.G770A	p.G257D	GCGGTGCCCTGCA	.	37	32	64	1	.	0	0	0	0	0	3
KDM4C	23081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	7049096	7049096	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KDM4C-228	NM_001146696	exon17	c.G2386C	p.A796P	AGGTGGGCCCATG	.	69	22	90	0	.	0	0	0	0	0	5
KDM4C	23081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	7049109	7049109	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KDM4C-228	NM_001146696	exon17	c.G2399T	p.C800F	TCATGTGCGCCGT	.	84	31	102	0	.	13	13	0	0	0	5
FREM1	158326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	14776240	14776240	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FREM1-138	NM_001177704	exon2	c.A12G	p.Q4Q	GGATTCTTGTGTC	.	146	63	120	0	.	0	0	0	0	0	5
BNC2	54796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	16436339	16436339	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BNC2-92	NM_017637	exon6	c.T1853A	p.M618K	GTGGCCATCATCA	.	74	39	72	0	.	0	0	0	0	0	5
SLC24A2	25769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	19520911	19520911	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC24A2-517	NM_020344	exon9	c.A1717T	p.I573F	CAAAAATGTTGCT	.	193	89	157	0	.	0	0	0	0	0	5
TMEM215	401498	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	32784389	32784389	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMEM215-90	NM_212558	exon2	c.C208A	p.P70T	AAGTGGCCAGAGA	.	150	71	141	1	.	0	0	0	0	0	3
ANKRD18B	441459	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	9	33572356	33572356	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001244752	exon16	c.T3031C	p.X1011Q	CTTCTCTAGAATC	.	213	107	170	0	.	0	0	0	0	0	3
C9orf24	84688	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	34381072	34381072	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C9orf24-91	NM_032596	exon5	c.G530A	p.R177Q	GTGATCCGCGGCA	.	138	73	56	1	.	1	1	0	0	0	3
C9orf131	138724	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	35043650	35043650	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C9orf131-90	NM_203299	exon2	c.1024delC	p.P342fs	ATGCCACCCCCCT	.	85	32	51	0	.	0	0	0	0	0	3
C9orf131	138724	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35044520	35044520	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C9orf131-90	NM_203299	exon2	c.C1894A	p.Q632K	ATGGAGCAAAAAG	.	91	33	63	1	.	0	0	0	0	0	4
TLN1	7094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35720206	35720206	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TLN1-609	NM_006289	exon13	c.C1294T	p.L432L	GCTGCAGGACTGT	.	142	33	93	0	.	0	0	0	0	0	5
CREB3	10488	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35735312	35735312	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CREB3-90	NM_006368	exon6	c.A552G	p.K184K	CTTGAAATACACA	.	177	57	114	1	.	0	0	0	0	0	3
CCIN	881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	36170340	36170340	+	Missense_Mutation	SNP	G	G	A	rs150485511	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCIN-92	NM_005893	exon1	c.G841A	p.V281M	GATTCCGTGGTCA	.	111	49	81	0	G|1.000;A|0.000	0	0	0	0	0	5
FRMPD1	22844	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	37744759	37744759	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FRMPD1-159	NM_014907	exon16	c.G2730A	p.E910E	GAGGGAGACCAAG	.	88	43	86	2	.	0	0	0	0	0	4
FRMPD1	22844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	37745283	37745283	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FRMPD1-159	NM_014907	exon16	c.A3254G	p.D1085G	GAAGTGATGAATG	.	91	32	72	0	.	0	0	0	0	0	5
CNTNAP3	79937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	39109179	39109179	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNTNAP3-91	NM_033655	exon15	c.G2343A	p.G781G	CAGTGGCCCCAGT	.	456	202	389	0	.	3	0	3	0	0	5
PRKACG	5568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	71628334	71628334	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRKACG-1061	NM_002732	exon1	c.A675G	p.L225L	CACCCCTAGGGCC	.	105	47	69	0	.	0	0	0	0	0	5
TJP2	9414	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	71831374	71831374	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TJP2-115	NM_001170416	exon3	c.G327A	p.L109L	TGGGCTGCTCCAG	.	49	22	47	1	.	0	0	0	0	0	4
PRUNE2	158471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79325100	79325100	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRUNE2-157	NM_015225	exon8	c.G2090A	p.R697K	GAGGCTCTCCTAT	.	64	29	47	0	.	0	0	0	0	0	5
TLE4	7091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	82267520	82267520	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TLE4-524	NM_007005	exon7	c.G403A	p.A135T	CTCCAGGCCCAGC	.	116	53	112	0	.	2	2	0	0	0	5
TLE4	7091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	82267635	82267635	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TLE4-524	NM_007005	exon7	c.C518T	p.S173F	CCCTCTCCAGTGC	.	96	43	74	0	.	18	9	9	0	0	5
FRMD3	257019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	85926825	85926825	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FRMD3-91	NM_174938	exon8	c.T750A	p.N250K	TCTCTTATTTCCC	.	35	15	30	0	.	4	4	0	0	0	5
AGTPBP1	23287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	88248284	88248284	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AGTPBP1-158	NM_015239	exon14	c.T1188C	p.Y396Y	TAAATCATAGTCC	.	29	19	36	0	.	0	0	0	0	0	5
NAA35	60560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	88576991	88576991	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NAA35-92	NM_024635	exon6	c.C412G	p.P138A	CATAATCCAGACT	.	78	39	91	0	.	10	6	4	0	0	5
NFIL3	4783	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	94171973	94171973	+	Silent	SNP	C	C	T	rs141662610	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NFIL3-90	NM_005384	exon2	c.G1044A	p.T348T	TTTTTGCGTGGCC	.	85	31	75	1	C|1.000;T|0.000	75	42	33	0	0	4
WNK2	65268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	96051773	96051773	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	WNK2-765	NM_006648	exon19	c.C4737T	p.G1579G	GGTGGGCGACAGA	.	86	37	44	0	.	0	0	0	0	0	5
PTCH1	5727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	98244481	98244481	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTCH1-3532	NM_000264	exon4	c.T589C	p.W197R	ATTTCCACTGCCT	.	50	20	39	0	.	0	0	0	0	0	5
SLC44A1	23446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	108126992	108126992	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC44A1-94	NM_080546	exon10	c.A1244G	p.Y415C	CATACTATTTTAC	.	163	66	130	0	.	0	0	0	0	0	5
FAM206A	54942	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	111696815	111696815	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_017832	exon1	c.G49A	p.D17N	CTCGTGGATCGAT	.	463	190	210	0	.	7	4	3	0	0	4
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113192665	113192665	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SVEP1-75	NM_153366	exon33	c.G5419C	p.V1807L	CACCTACTGTATA	.	134	62	122	0	.	0	0	0	0	0	5
KIAA0368	23392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114148674	114148674	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA0368-68	NM_001080398	exon33	c.G4044A	p.W1348X	AACTCGCCACATA	.	114	45	107	0	.	29	26	3	0	0	5
PTBP3	9991	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114986217	114986217	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001244898	exon14	c.G1591A	p.A531T	GAATTGCTTCTTC	.	72	29	77	1	.	40	18	22	0	0	4
RGS3	5998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116269609	116269609	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RGS3-227	NM_144488	exon14	c.C1128T	p.V376V	CATGGTCCCCCAG	.	195	80	130	0	.	0	0	0	0	0	5
ASTN2	23245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	119488071	119488071	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASTN2-161	NM_014010	exon15	c.C2632T	p.L878L	GCCACAGCTGCTG	.	122	53	120	0	.	4	0	4	0	0	5
MEGF9	1955	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	123367687	123367687	+	Silent	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001080497	exon6	c.A1590T	p.G530G	CACAAATCCCATT	.	248	92	192	2	.	6	2	4	0	0	3
GSN	2934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	124064309	124064309	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GSN-154	NM_000177	exon2	c.G213A	p.W71X	GATCTGGCGTGTG	.	300	137	227	0	.	157	153	4	0	0	5
OR1B1	347169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125391061	125391061	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR1B1-68	NM_001004450	exon1	c.A754T	p.T252S	CCATGGTGAGGTG	.	136	54	139	0	.	0	0	0	0	0	5
ZBTB6	10773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125673275	125673275	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZBTB6-90	NM_006626	exon2	c.C1077T	p.C359C	CTTCAAGCACACA	.	246	120	160	0	.	8	5	3	0	0	5
CRB2	286204	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	126132455	126132455	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CRB2-91	NM_173689	exon7	c.G1123A	p.D375N	TGCAGTGACACTG	.	75	26	70	1	.	0	0	0	0	0	4
MAPKAP1	79109	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	128322005	128322005	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAPKAP1-678	NM_001006618	exon6	c.A755T	p.E252V	ATGGGCTCATTGG	.	159	75	135	2	.	70	33	37	0	0	3
ZBTB34	403341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	129642194	129642194	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZBTB34-69	NM_001099270	exon2	c.C504T	p.C168C	ATATTGCTCTCAG	.	116	57	92	0	.	1	1	0	0	0	5
SPTAN1	6709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131346591	131346591	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SPTAN1-158	NM_003127	exon17	c.C2224T	p.R742C	CAGGCCCGCCAGT	.	87	27	75	0	.	34	18	16	0	0	5
PKN3	29941	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	131480648	131480650	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PKN3-521	NM_013355	exon17	c.2030_2032del	p.677_678del	TACACGAGAAGAA	.	108	30	83	0	.	0	0	0	0	0	3
PRDM12	59335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	133556768	133556768	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRDM12-90	NM_021619	exon5	c.G816A	p.V272V	CTTCGTGTGCCGC	.	150	30	72	0	.	0	0	0	0	0	4
PRRC2B	84726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	134366821	134366821	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRRC2B-24	NM_013318	exon28	c.C6235T	p.P2079S	ACCATGCCACTGC	.	198	84	134	0	.	6	2	4	0	0	5
GBGT1	26301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136037733	136037733	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GBGT1-90	NM_021996	exon2	c.C67A	p.L23M	ACCACAGGACACT	.	121	51	81	0	.	0	0	0	0	0	5
DBH	1621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136501745	136501745	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DBH-516	NM_000787	exon1	c.C252T	p.G84G	GGCTGGCGTCCTG	.	69	26	51	0	.	0	0	0	0	0	5
KIAA1984	84960	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139700573	139700573	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA1984-91	NM_001039374	exon10	c.A992G	p.N331S	AGGAGAACCTGGA	.	90	38	70	1	.	1	0	1	0	0	4
SSNA1	8636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140084326	140084326	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SSNA1-153	NM_003731	exon3	c.C320T	p.T107I	AGGCTACAGCCCC	.	113	47	100	0	.	160	94	66	0	0	5
C9orf173	441476	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140145761	140145761	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C9orf173-46	NM_001256701	exon1	c.C23T	p.A8V	AGAAGGCAGTGAA	.	195	87	165	1	.	0	0	0	0	0	4
EHMT1	79813	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	140671199	140671199	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	EHMT1-154	NM_001145527	exon12	c.A1921G	p.T641A	GAGGTGACGATAG	.	246	110	163	1	.	35	15	20	0	0	3
CACNA1B	774	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140850238	140850238	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CACNA1B-138	NM_001243812	exon8	c.G1159A	p.G387R	CTCAACGGGTACC	.	160	68	103	1	.	0	0	0	0	0	4
FRMPD4	9758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12728521	12728521	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FRMPD4-263	NM_014728	exon14	c.A1474G	p.I492V	TAGCCTATCACGC	.	53	46	31	0	.	0	0	0	0	0	5
DCAF8L2	347442	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	27765447	27765447	+	Silent	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DCAF8L2-42	NM_001136533	exon1	c.A435G	p.E145E	GGAGGAAGAAGAA	.	30	27	26	0	.	0	0	0	0	0	3
CASK	8573	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	41437770	41437770	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CASK-616	NM_001126054	exon15	c.G1326A	p.Q442Q	GTGAGTCTGAAGT	.	37	30	27	0	.	0	0	0	0	0	4
ITM2A	9452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	78616967	78616967	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ITM2A-131	NM_004867	exon5	c.T562A	p.Y188N	GCAGATATCTGCC	.	163	137	173	1	.	0	0	0	0	0	4
ZNF711	7552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	84519342	84519342	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF711-134	NM_021998	exon5	c.T684C	p.D228D	CAGTGATGGTTCA	.	143	125	120	0	.	2	2	0	0	0	5
CPXCR1	53336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	88008936	88008936	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CPXCR1-133	NM_001184771	exon3	c.A521G	p.K174R	GGGTAAAGCGAAA	.	93	78	65	0	.	0	0	0	0	0	5
NRK	203447	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	105132368	105132368	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NRK-630	NM_198465	exon5	c.G334A	p.A112T	TATGGAGCATTTT	.	235	16	150	0	.	0	0	0	0	0	3
PAK3	5063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	110406821	110406821	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAK3-1043	NM_001128168	exon8	c.C740A	p.A247D	CCATTGCTTCACC	.	85	75	102	0	.	0	0	0	0	0	5
KLHL13	90293	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	117033021	117033021	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KLHL13-556	NM_001168299	exon8	c.G1827A	p.V609V	TTTCTGCACTATC	.	97	83	99	1	.	12	0	12	0	0	3
ZBTB33	10009	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	119387857	119387857	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZBTB33-132	NM_006777	exon2	c.587delT	p.I196fs	ATGTCATTTTTTG	.	65	54	46	0	.	0	0	0	0	0	3
THOC2	57187	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	122757038	122757038	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	THOC2-133	NM_001081550	exon29	c.G3600A	p.V1200V	ATTTTGCACACTG	.	88	71	116	1	.	27	1	26	0	0	4
THOC2	57187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	122820490	122820490	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	THOC2-133	NM_001081550	exon8	c.G676A	p.D226N	AGAAGTCATCGTG	.	120	105	124	0	.	6	0	6	0	0	5
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	123215366	123215366	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	STAG2-134	NM_001042749	exon28	c.C2912T	p.A971V	CCATTGCCATGCT	.	70	63	59	0	.	0	0	0	0	0	5
DCAF12L2	340578	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	125298569	125298569	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DCAF12L2-113	NM_001013628	exon1	c.G1339T	p.G447W	GCCCCCCAGCCAC	.	171	140	140	2	.	0	0	0	0	0	3
IGSF1	3547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	130416500	130416500	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGSF1-133	NM_001555	exon7	c.C1164T	p.G388G	ATAGATGCCAGTA	.	196	174	148	1	.	0	0	0	0	0	4
MAGEC3	139081	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	140926205	140926205	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MAGEC3-555	NM_138702	exon1	c.T104C	p.V35A	CAGTGGTGCTCCC	.	174	152	102	1	.	0	0	0	0	0	3
MTMR1	8776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	149931073	149931073	+	Silent	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MTMR1-131	NM_003828	exon15	c.C1869A	p.A623A	GCTGGCCGTCAGG	.	255	223	178	1	.	11	0	11	0	0	4
ZFP92	139735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152685761	152685761	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFP92-62	NM_001136273	exon3	c.G236T	p.R79I	TCCCCAGAACCTG	.	205	80	60	0	.	0	0	0	0	0	5
FLNA	2316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153577327	153577327	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FLNA-599	NM_001110556	exon48	c.C7834T	p.R2612W	AGAGCCGGCTGCC	.	192	172	144	0	.	234	32	202	0	0	5
FLNA	2316	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	153599554	153599554	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FLNA-599	NM_001456	exon2	c.C60T	p.G20G	GTCGACGCCGCCG	.	145	131	41	1	.	110	7	103	0	0	3
PLXNA3	55558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153689660	153689660	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PLXNA3-132	NM_017514	exon3	c.C816T	p.F272F	AGAGTTCTACTCA	.	106	87	69	0	.	18	2	16	0	0	5
FAM3A	60343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153740192	153740192	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM3A-130	NM_001171134	exon3	c.C140T	p.S47L	GTCACCGAGCTCT	.	34	29	21	0	.	0	0	0	0	0	5
LRRC42	115353	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	54423901	54423902	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC42-90	NM_001256409	exon4	c.553_554insT	p.L185fs	TGCAAGCTTGGAG	.	167	52	120	0	.	0	0	0	0	0	3
BTRC	8945	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	103310572	103310573	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BTRC-659	NM_033637	exon14	c.1773_1774insC	p.E591fs	AGCTGAACCCCCC	.	198	48	149	0	.	0	0	0	0	0	3
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	608624	608625	+	Frame_Shift_Ins	INS	-	-	GACCGCTCCAG	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHRF1-22	NM_020901	exon14	c.3165_3166insGACCGCTCCAG	p.S1055fs	CTCCAGTGACCGC	.	67	10	137	0	.	0	0	0	0	0	3
DGKA	1606	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	56347513	56347514	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DGKA-255	NM_001345	exon24	c.2169_2170insC	p.P723fs	GGGCCCACCCCCC	.	129	50	93	0	.	0	0	0	0	0	3
ANKRD52	283373	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	56638929	56638930	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD52-70	NM_173595	exon22	c.2450_2451insG	p.S817fs	AGGTACGAAAACG	.	204	81	154	0	.	0	0	0	0	0	3
OR5AU1	390445	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	21623596	21623597	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR5AU1-68	NM_001004731	exon1	c.589_590insT	p.V197fs	AGCCCACAATCAG	.	124	53	82	0	.	0	0	0	0	0	3
VPS18	57617	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	41195414	41195415	+	Frame_Shift_Ins	INS	-	-	AG	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	VPS18-155	NM_020857	exon5	c.2797_2798insAG	p.K933fs	CAGCTCAAGGCTG	.	62	20	32	0	.	0	0	0	0	0	3
SLC24A1	9187	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	65917184	65917185	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_004727	exon2	c.766_767insC	p.T256fs	GATAGCACCCCAA	.	181	52	158	0	.	0	0	0	0	0	3
CLPP	8192	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	6361605	6361606	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CLPP-91	NM_006012	exon1	c.20_21insA	p.V7fs	TATTGGTAGGGGG	.	46	23	21	0	.	0	0	0	0	0	3
RBM43	375287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	152107742	152107743	+	Frame_Shift_Ins	INS	-	-	TC	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RBM43-90	NM_198557	exon4	c.752_753insGA	p.K251fs	TCCACTTTCTCCT	.	42	16	37	0	.	0	0	0	0	0	3
SCRN3	79634	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	175264719	175264720	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SCRN3-91	NM_024583	exon3	c.229_230insG	p.W77fs	TGGTTGTGGGGGG	.	80	33	70	0	.	0	0	0	0	0	3
NBEAL1	65065	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	204032074	204032075	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NBEAL1-92	NM_001114132	exon37	c.5901_5902insA	p.F1967fs	CAATTTCAAAAAA	.	40	14	44	0	.	0	0	0	0	0	3
DLGAP4	22839	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	35128865	35128866	+	In_Frame_Ins	INS	-	-	CTA	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DLGAP4-94	NM_014902	exon9	c.2354_2355insCTA	p.S785delinsSY	CCTCCTCCAGCTC	.	218	40	82	0	.	0	0	0	0	0	3
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	46917558	46917559	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL18A1-90	NM_030582	exon31	c.3206_3207insC	p.G1069fs	AAGTGGGCCCCCC	.	113	37	82	0	.	0	0	0	0	0	3
MEI1	150365	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	42099452	42099453	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MEI1-70	NM_152513	exon2	c.292_293insT	p.L98fs	AGTGTGCTTTTTG	.	111	44	86	0	.	0	0	0	0	0	3
ANKRD28	23243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	15756165	15756166	+	Splice_Site	INS	-	-	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD28-135	NM_001195098	exon10	c.445-2->C	.	TTACTCTGGGGGG	.	17	13	56	0	.	0	0	0	0	0	3
DUSP7	1849	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52088242	52088243	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DUSP7-659	NM_001947	exon2	c.666_667insA	p.D222fs	CTCTCGGTCCGAC	.	142	105	153	0	.	0	0	0	0	0	3
NNT	23530	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	43619202	43619203	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NNT-92	NM_012343	exon5	c.668_669insA	p.G223fs	CTGCTGGAAAAGT	.	27	10	42	0	.	0	0	0	0	0	3
LARS	51520	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	145524102	145524103	+	Splice_Site	INS	-	-	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LARS-90	NM_020117	exon18	c.1590-2->C	.	AGTACCTGGGAGT	.	147	67	109	0	.	0	0	0	0	0	3
GPR115	221393	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	47680311	47680312	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GPR115-160	NM_153838	exon5	c.519_520insT	p.D173fs	TACAGACTTGTCT	.	83	23	50	0	.	0	0	0	0	0	3
GSTA2	2939	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	52615481	52615482	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GSTA2-91	NM_000846	exon7	c.563_564insA	p.I188fs	TTACTGATTCTGG	.	76	35	86	0	.	0	0	0	0	0	3
DST	667	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	56481544	56481545	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	DST-523	NM_001723	exon24	c.6721_6722insA	p.G2241fs	GTTTACCTTTTTG	.	95	40	62	0	.	0	0	0	0	0	3
LAMA4	3910	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	112441533	112441534	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LAMA4-140	NM_001105206	exon33	c.4618_4619insA	p.L1540fs	TCTTCAGTTTTTT	.	60	21	44	0	.	0	0	0	0	0	3
ICAM1	3383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10394800	10394801	+	Missense_Mutation	DNP	CC	CC	TT	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ICAM1-91	NM_000201	exon4	c.C730T	p.P244S	CTGTTCCCAGTCT	.	114	15	106	0	.	0	0	0	0	0	4
KIAA2013	90231	broad.mit.edu;mdanderson.org	37	1	11982929	11982929	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KIAA2013-91	NM_138346	exon2	c.A1651G	p.I551V	GCGTGATGGGCTG	.	873	242	629	1	.	183	90	93	0	0	2
NBPF1	55672	broad.mit.edu;bcgsc.ca	37	1	16891333	16891333	+	Missense_Mutation	SNP	C	C	T	rs3872309	bycluster;byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	.	.	.	.	CTTCCCCTTCTTT	.	46	17	34	0	C|0.500;T|0.500	224	218	6	0	0	2
AHDC1	27245	hgsc.bcm.edu	37	1	27877519	27877519	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AHDC1-90	NM_001029882	exon6	c.C1108T	p.P370S	CGTGCGGTGAGCA	.	48	25	7	0	.	24	11	13	0	0	1
RPS6KC1	26750	broad.mit.edu;bcgsc.ca	37	1	213277826	213277826	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RPS6KC1-417	NM_012424	exon4	c.G293T	p.R98I	AAGAGAGAAGACA	.	89	42	99	2	.	10	8	2	0	0	2
PARP1	142	broad.mit.edu;bcgsc.ca	37	1	226573266	226573266	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PARP1-727	NM_001618	exon7	c.C950T	p.A317V	GTCCAGGCAGTGA	.	310	15	173	0	.	64	60	4	0	0	2
TCF7L2	6934	broad.mit.edu;bcgsc.ca	37	10	114711348	114711348	+	Silent	SNP	C	C	G	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TCF7L2-586	NM_001198526	exon3	c.C363G	p.L121L	ATCGCTCTCGCCC	.	167	73	118	2	.	11	5	6	0	0	2
LRRC57	255252	bcgsc.ca	37	15	42837435	42837435	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	LRRC57-90	NM_153260	exon5	c.C518T	p.S173F	CAGCAAGATATCT	.	49	25	35	1	.	32	16	16	0	0	1
SETD1A	9739	bcgsc.ca	37	16	30990658	30990658	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SETD1A-93	NM_014712	exon14	c.C3551T	p.A1184V	CTCCAGCCACACC	.	148	71	38	1	.	19	9	10	0	0	1
NLGN2	57555	broad.mit.edu;bcgsc.ca	37	17	7311947	7311947	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	NLGN2-90	NM_020795	exon1	c.G373A	p.D125N	TTCACCGACAACT	.	88	71	102	1	.	5	1	4	0	0	2
KANK2	25959	hgsc.bcm.edu;broad.mit.edu	37	19	11304002	11304002	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	KANK2-68	NM_015493	exon2	c.C754T	p.L252F	CGGGGAGGTCCAG	.	64	4	42	0	.	25	23	2	0	0	2
ZNF567	163081	broad.mit.edu;bcgsc.ca	37	19	37210811	37210811	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF567-90	NM_152603	exon4	c.T1092C	p.C364C	CATTTGTAAAGAA	.	59	34	52	2	.	3	0	3	0	0	2
ZNF579	163033	hgsc.bcm.edu	37	19	56090309	56090309	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF579-90	NM_152600	exon2	c.C697T	p.L233L	AGCGCAGACACAG	.	63	27	7	0	.	6	4	2	0	0	1
PTRHD1	391356	bcgsc.ca	37	2	25013384	25013384	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTRHD1-90	NM_001013663	exon2	c.C319T	p.L107L	GCCACAGCATGTG	.	138	75	119	2	.	119	81	38	0	0	1
FZD7	8324	bcgsc.ca	37	2	202900893	202900893	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FZD7-659	NM_003507	exon1	c.G1523A	p.C508Y	AGACGTGCAAGAG	.	132	59	100	2	.	7	2	5	0	0	1
TGM2	7052	broad.mit.edu;bcgsc.ca	37	20	36767875	36767875	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TGM2-155	NM_198951	exon9	c.C1281T	p.S427S	CTTAGTGCTGATC	.	308	18	247	2	.	65	63	2	0	0	2
ZFP64	55734	broad.mit.edu;bcgsc.ca	37	20	50769338	50769338	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZFP64-155	NM_018197	exon6	c.A1393T	p.I465F	GGTCGATCTGAAA	.	108	40	83	2	.	9	3	6	0	0	2
PATZ1	23598	broad.mit.edu;bcgsc.ca	37	22	31741473	31741473	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PATZ1-590	NM_032050	exon1	c.G116T	p.R39L	CAGAAGCGCCCGC	.	274	129	131	2	.	5	1	4	0	0	2
CCNL1	57018	hgsc.bcm.edu;mdanderson.org	37	3	156877880	156877880	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CCNL1-659	NM_020307	exon1	c.G4A	p.A2T	CGGACGCCATAGT	.	38	30	8	0	.	9	0	9	0	0	2
VWA5B2	90113	hgsc.bcm.edu	37	3	183959354	183959354	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_138345	exon19	c.G3257T	p.R1086L	AGGAGCGCCTCTG	.	65	53	6	0	.	35	0	35	0	0	1
ADRA2C	152	bcgsc.ca	37	4	3768889	3768889	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADRA2C-522	NM_000683	exon1	c.C556T	p.P186S	TTCCCGCCGCTGG	.	139	55	55	2	.	9	2	7	0	0	1
SEC31A	22872	bcgsc.ca	37	4	83795857	83795857	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SEC31A-268	NM_001077206	exon6	c.T546A	p.H182Q	TAAAATATGCTGA	.	40	10	52	0	.	42	12	30	0	0	1
SLC12A7	10723	broad.mit.edu;bcgsc.ca	37	5	1064007	1064007	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SLC12A7-138	NM_006598	exon20	c.G2691T	p.M897I	CAAGAACATCTGC	.	230	104	133	1	.	22	10	12	0	0	2
BRIX1	55299	ucsc.edu;bcgsc.ca	37	5	34915889	34915889	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	BRIX1-90	NM_018321	exon1	c.G46A	p.A16T	GTTCAGGCGAAGA	.	478	179	418	2	.	42	19	23	0	0	2
PCDHA7	56141	bcgsc.ca	37	5	140215497	140215497	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHA7-94	NM_031852	exon1	c.T1529C	p.V510A	TGTCAGTGCACGC	.	405	181	97	2	.	3	1	2	0	0	1
PCDHB5	26167	hgsc.bcm.edu	37	5	140516906	140516906	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB5-95	NM_015669	exon1	c.C1890T	p.S630S	GCTGAGCGAGCGC	.	105	45	7	0	.	51	29	22	0	0	1
TLX3	30012	broad.mit.edu;bcgsc.ca	37	5	170737206	170737206	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TLX3-658	NM_021025	exon2	c.C474T	p.Y158Y	CCCCTACCAGAAC	.	231	97	121	1	.	15	3	11	1	0	2
C4A	720	bcgsc.ca;mdanderson.org	37	6	31994861	31994861	+	Missense_Mutation	SNP	C	C	T	rs201414896	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C4A-44	NM_007293	exon20	c.C2554T	p.R852W	GAGCTGCGGCCTG	.	389	212	281	0	C|0.999;T|0.001	107	27	80	0	0	2
TRERF1	55809	bcgsc.ca;mdanderson.org	37	6	42236625	42236625	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TRERF1-230	NM_033502	exon5	c.A704G	p.D235G	TGGTAGTCATAAT	.	105	42	74	2	.	3	1	2	0	0	2
ANKMY2	57037	ucsc.edu;bcgsc.ca	37	7	16649291	16649291	+	Silent	SNP	G	G	A	rs149044205	byfrequency;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKMY2-514	NM_020319	exon7	c.C846T	p.L282L	CTGCTGGAGGAGT	.	87	30	90	1	G|0.998;C|0.002	27	8	19	0	0	2
CDKN2A	1029	hgsc.bcm.edu	37	9	21971150	21971150	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CDKN2A-23992	NM_058195	exon2	c.C251A	p.A84D	AGTTGGGCTCCGC	.	36	12	9	0	.	36	18	18	0	0	1
ND4	0	broad.mit.edu;bcgsc.ca	37	MT	11852	11852	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361381	exon1	c.G1093T	p.A365S	AGCCTCGCTAACC	.	97	66	16	0	.	27846	7597	20222	10	17	2
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	12895	12895	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	ENST00000361567	exon1	c.G559A	p.A187T	GCCTTAGCATGAT	.	151	106	11	0	.	2215	599	1615	0	1	2
IGSF21	84966	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	18691917	18691917	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGSF21-156	NM_032880	exon6	c.C741T	p.S247S	CCCCTCCCGTGGC	.	328	30	171	0	.	0	0	0	0	0	3
USP48	84196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22055060	22055060	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	USP48-659	NM_001032730	exon11	c.C1453G	p.L485V	CTTACAGACCAGC	.	152	40	100	0	.	0	0	0	0	0	5
UTP11L	51118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	38482069	38482069	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	UTP11L-90	NM_016037	exon2	c.G102T	p.K34N	GAAAAAGAAAGAT	.	67	16	41	0	.	0	0	0	0	0	5
PTBP2	58155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	97272469	97272469	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PTBP2-90	NM_021190	exon11	c.G1126A	p.D376N	AAGAAAGACAGCG	.	99	19	96	0	.	0	0	0	0	0	5
CD1E	913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158324185	158324185	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CD1E-93	NM_001185107	exon2	c.C77A	p.S26Y	TACAATCCTATCA	.	94	21	89	0	.	0	0	0	0	0	5
OR6K6	128371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158725430	158725430	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR6K6-69	NM_001005184	exon1	c.C825A	p.F275L	TGTGTTCTTGCTA	.	403	92	278	0	.	0	0	0	0	0	5
IFI16	3428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159021731	159021731	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IFI16-91	NM_001206567	exon9	c.A1760T	p.E587V	TCCTGGAGGTATA	.	147	35	126	0	.	0	0	0	0	0	5
IGFN1	91156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201182038	201182038	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	IGFN1-71	NM_001164586	exon12	c.G8017T	p.G2673C	TTTAAGGGTGGGG	.	163	38	137	0	.	0	0	0	0	0	5
RAB3GAP2	25782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220369717	220369717	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	RAB3GAP2-90	NM_012414	exon10	c.G835C	p.D279H	TTTGATCAAAGGG	.	85	23	94	0	.	0	0	0	0	0	5
PCNXL2	80003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	233372603	233372603	+	Silent	SNP	C	C	A	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCNXL2-91	NM_014801	exon9	c.G2346T	p.S782S	GGTTTCCGACTGG	.	132	12	100	0	.	0	0	0	0	0	4
ACTN2	88	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236902810	236902810	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ACTN2-95	NM_001103	exon10	c.C1085T	p.P362L	TCATGCCCTCCGA	.	231	63	107	0	.	0	0	0	0	0	5
OR2G6	391211	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248685138	248685138	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR2G6-71	NM_001013355	exon1	c.G191T	p.S64I	TCCTCAGCAACCT	.	210	49	183	1	.	0	0	0	0	0	4
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	608465	608465	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PHRF1-22	NM_020901	exon14	c.G3006C	p.K1002N	CAGGAAGAAGGCC	.	190	62	66	0	.	0	0	0	0	0	5
OR5AR1	219493	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56431814	56431814	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	OR5AR1-68	NM_001004730	exon1	c.A653G	p.Y218C	TCTCCTATACCTT	.	142	49	121	1	.	0	0	0	0	0	4
MLL	4297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118374844	118374844	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MLL-1255	NM_001197104	exon27	c.G8237C	p.R2746T	CAAAAAGAAATGG	.	56	23	82	0	.	0	0	0	0	0	5
PPM1H	57460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	63131354	63131354	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPM1H-637	NM_020700	exon5	c.C882G	p.I294M	ATTTCTGATGATT	.	159	32	103	0	.	0	0	0	0	0	5
C14orf159	80017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	91647656	91647656	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	C14orf159-92	NM_001102368	exon8	c.C857A	p.P286H	AAGATCCTCTGCA	.	78	22	57	0	.	0	0	0	0	0	5
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105414374	105414374	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	AHNAK2-47	NM_138420	exon7	c.G7414C	p.A2472P	TGTCCGCCACAGA	.	172	60	129	0	.	0	0	0	0	0	5
HERC2	8924	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28510816	28510816	+	Silent	SNP	G	G	A	rs139612007	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HERC2-234	NM_004667	exon14	c.C1818T	p.I606I	CACATCGATGACC	.	255	106	182	1	G|0.999;A|0.001	0	0	0	0	0	4
TYRO3	7301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41853473	41853473	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TYRO3-1388	NM_006293	exon2	c.C273T	p.I91I	GTACATCCCAGTC	.	153	65	88	0	.	0	0	0	0	0	5
TMC5	79838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19451450	19451450	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMC5-91	NM_001105249	exon3	c.G90T	p.L30F	GTATTTGAAAACT	.	134	37	73	0	.	0	0	0	0	0	5
TMC5	79838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19488768	19488768	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TMC5-91	NM_001105249	exon13	c.C2097G	p.I699M	AAACATCTTTTTG	.	211	50	152	0	.	0	0	0	0	0	5
SLC35G6	643664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7385476	7385476	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001102614	exon2	c.C173T	p.S58F	CCCTTTCTCATAT	.	220	43	93	0	.	0	0	0	0	0	5
GAS2L2	246176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	34073260	34073260	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	GAS2L2-227	NM_139285	exon6	c.C1256G	p.S419C	ACCCAAGATGTGG	.	120	57	88	0	.	0	0	0	0	0	5
MYOM1	8736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	3079307	3079307	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYOM1-94	NM_003803	exon34	c.G4518A	p.K1506K	CCCGGTCTTAACT	.	131	26	125	0	.	0	0	0	0	0	5
PIAS2	9063	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	44435530	44435530	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PIAS2-662	NM_173206	exon4	c.G633T	p.L211F	TCACCTCAACTGA	.	120	12	106	0	.	0	0	0	0	0	3
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9090327	9090327	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUC16-566	NM_024690	exon1	c.C1488A	p.S496R	AGCTGTGCTGGAA	.	162	40	116	0	.	0	0	0	0	0	5
IGFL1	374918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46733364	46733364	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_198541	exon2	c.26-1G>C	.	CCCACAGCTGTCT	.	110	39	71	0	.	0	0	0	0	0	4
PPFIA3	8541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49637077	49637077	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PPFIA3-226	NM_003660	exon10	c.G1186A	p.E396K	AATTTTGAGGAGC	.	475	134	159	0	.	0	0	0	0	0	5
SIGLEC12	89858	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52003536	52003536	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SIGLEC12-96	NM_053003	exon2	c.C446G	p.S149X	TATCTTGACAGTA	.	253	58	188	0	.	0	0	0	0	0	4
CAPN14	440854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	31428282	31428282	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145122	exon2	c.G32T	p.W11L	AGCTTCCATCTGC	.	279	96	245	0	.	0	0	0	0	0	5
HNRPLL	92906	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	38800509	38800509	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HNRPLL-91	NM_138394	exon8	c.C935A	p.P312H	AGTTCAGGTGTAT	.	117	36	113	0	.	0	0	0	0	0	4
SNRNP200	23020	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	96962720	96962720	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SNRNP200-162	NM_014014	exon12	c.A1466G	p.Y489C	GCACGGTAGAGCT	.	277	87	169	1	.	0	0	0	0	0	3
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168104662	168104662	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	XIRP2-104	NM_152381	exon9	c.C6760T	p.L2254L	GACTTTCTAATGA	.	163	52	268	0	.	0	0	0	0	0	5
SGOL2	151246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201440158	201440158	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SGOL2-94	NM_001160033	exon8	c.C3749T	p.S1250F	TCCTTTCTATTTT	.	109	32	163	0	.	0	0	0	0	0	5
TOPAZ1	375337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	44283769	44283769	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145030	exon1	c.G224C	p.G75A	GGGCTGGAAAGGC	.	353	80	174	0	.	0	0	0	0	0	5
CADPS	8618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	62631437	62631437	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CADPS-281	NM_003716	exon6	c.G1285C	p.E429Q	GTTTCTCTCCTCC	.	217	53	150	0	.	0	0	0	0	0	5
MYLK	4638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	123385189	123385189	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MYLK-365	NM_053025	exon22	c.G3708A	p.M1236I	AGGGGGCATTGCT	.	92	26	60	0	.	0	0	0	0	0	5
ATP13A5	344905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193039524	193039524	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ATP13A5-144	NM_198505	exon16	c.G1861T	p.V621F	TGTAGACATGGAA	.	89	35	111	0	.	0	0	0	0	0	5
ENAM	10117	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71510524	71510524	+	Silent	SNP	G	G	T	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ENAM-93	NM_031889	exon9	c.G3381T	p.G1127G	AAGAGGGACCAAT	.	556	89	389	1	.	0	0	0	0	0	4
ANKRD17	26057	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74012588	74012588	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ANKRD17-234	NM_198889	exon10	c.G1762T	p.A588S	CGTTAGCTCCTGT	.	206	32	107	1	.	0	0	0	0	0	4
CCSER1	401145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	91234151	91234151	+	Silent	SNP	T	T	C	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001145065	exon3	c.T1462C	p.L488L	AATAGTTTAAGAA	.	120	9	87	0	.	0	0	0	0	0	3
ADH5	128	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	99996090	99996090	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADH5-227	NM_000671	exon7	c.C936T	p.R312R	CCATGTGCGACCT	.	664	49	435	0	.	0	0	0	0	0	3
INTU	27152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	128608947	128608947	+	Silent	SNP	G	G	A	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	INTU-91	NM_015693	exon8	c.G1374A	p.Q458Q	TCAGCAGTACGAT	.	110	19	77	0	.	0	0	0	0	0	5
ARHGEF28	64283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	73169041	73169041	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	.	NM_001080479	exon22	c.C2784G	p.I928M	TGTGATCGACCGA	.	230	64	185	0	.	0	0	0	0	0	5
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140223018	140223018	+	Silent	SNP	C	C	A	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHA8-92	NM_031856	exon1	c.C2112A	p.I704I	CGCCATCTGCGCG	.	279	29	132	0	.	0	0	0	0	0	4
PCDHB5	26167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140515063	140515063	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PCDHB5-95	NM_015669	exon1	c.T47G	p.F16C	TTATGTTTCTTGC	.	149	63	125	0	.	0	0	0	0	0	5
TCOF1	6949	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149758877	149758877	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TCOF1-155	NM_001135243	exon16	c.C2564G	p.A855G	CCGTGGCTACAGC	.	358	87	195	1	.	0	0	0	0	0	4
HK3	3101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176318107	176318107	+	Silent	SNP	C	C	A	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HK3-294	NM_002115	exon4	c.G345T	p.G115G	CCTATGCCCCTCA	.	109	13	60	0	.	0	0	0	0	0	4
HIST1H3G	8355	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26271439	26271439	+	Silent	SNP	C	C	G	rs41266825	byfrequency;alternate_allele	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	HIST1H3G-90	NM_003534	exon1	c.G174C	p.S58S	CTCAGTCGACTTC	.	239	37	82	0	C|0.991;A|0.009	0	0	0	0	0	4
ZNF184	7738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	27419101	27419101	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ZNF184-91	NM_007149	exon6	c.G2237A	p.R746K	TGCAGTCTCTGAT	.	139	20	109	0	.	0	0	0	0	0	4
CYP21A2	1589	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	32007391	32007391	+	Silent	SNP	C	C	G	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CYP21A2-68	.	.	.	.	CTGGTCCATCCAA	.	723	142	424	0	.	0	0	0	0	0	3
TNFRSF21	27242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	47200618	47200618	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TNFRSF21-227	NM_014452	exon6	c.G1851T	p.E617D	GGGAATCTCTTCA	.	195	32	92	0	.	0	0	0	0	0	5
MUT	4594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49416590	49416590	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	MUT-91	NM_000255	exon7	c.G1383C	p.E461D	TATTCCCTCAGCT	.	156	24	108	0	.	0	0	0	0	0	5
ICK	22858	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	52871155	52871155	+	Missense_Mutation	SNP	T	T	C	rs145842629	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ICK-421	NM_016513	exon14	c.A1702G	p.M568V	TCTGCATAGCAGA	.	132	32	81	0	T|0.999;C|0.001	0	0	0	0	0	3
COL19A1	1310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	70890358	70890358	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	COL19A1-156	NM_001858	exon44	c.G2718T	p.E906D	GGGTGAGAGAGGA	.	218	33	143	0	.	0	0	0	0	0	5
ASCC3	10973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	101246658	101246658	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ASCC3-96	NM_006828	exon8	c.G1326C	p.R442S	GGGAATCCTTACT	.	102	19	89	0	.	0	0	0	0	0	4
SMO	6608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128851520	128851520	+	Silent	SNP	C	C	T	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SMO-2451	NM_005631	exon11	c.C1845T	p.S615S	TGTCTCCTCTGCC	.	149	42	98	0	.	0	0	0	0	0	5
PRKAG2	51422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151478345	151478345	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRKAG2-658	NM_016203	exon3	c.G359A	p.R120H	CTCATGCGTCGAG	.	36	21	40	0	.	0	0	0	0	0	5
FAM167A	83648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	11282142	11282142	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FAM167A-90	NM_053279	exon3	c.G385A	p.E129K	GCATCTCCGTCTG	.	103	43	90	0	.	0	0	0	0	0	5
ADRB3	155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	37823625	37823625	+	Silent	SNP	C	C	A	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	ADRB3-522	NM_000025	exon1	c.G363T	p.V121V	GGCGGTCACACAC	.	346	136	40	0	.	0	0	0	0	0	5
CNGB3	54714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87683246	87683246	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	CNGB3-93	NM_019098	exon4	c.G419A	p.R140H	CTTTGACGCATTC	.	52	14	80	0	.	0	0	0	0	0	5
PRUNE2	158471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79438595	79438595	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PRUNE2-157	NM_015225	exon6	c.G709C	p.D237H	CTCCATCTGACAG	.	196	48	139	0	.	0	0	0	0	0	5
PAPPA	5069	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	118974097	118974097	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PAPPA-77	NM_002581	exon4	c.G1804T	p.D602Y	TGCAATGATACCA	.	170	22	174	1	.	0	0	0	0	0	3
PNPLA4	8228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	7890140	7890140	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	PNPLA4-130	NM_004650	exon4	c.181-1G>A	.	ACATTCCTAAAAA	.	118	17	154	0	.	0	0	0	0	0	4
SYTL4	94121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	99955985	99955985	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	SYTL4-132	NM_001129896	exon6	c.A447T	p.R149S	TGTCTCTCTTTTA	.	70	44	133	0	.	0	0	0	0	0	5
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7579470	7579471	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	TP53-70225	NM_001126112	exon4	c.217_218insC	p.V73fs	GGGCCACGGGGGG	.	64	47	53	0	.	0	0	0	0	0	3
FNIP1	96459	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	131007363	131007364	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	.	FNIP1-92	NM_133372	exon14	c.2774_2775insA	p.I925fs	ACAGCAATTTTTT	.	85	26	102	0	.	0	0	0	0	0	3