#version 2.4.1
Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	AAChange	mRNA_acc	Nbr_MutT_WES	Nbr_TotalT_WES	Nbr_MutN_WES	Nbr_TotalN_WES	Nbr_MutT_Capture	Nbr_TotalT_Capture	Nbr_MutN_Capture	Nbr_TotalN_Capture
ABCC8	6833	hgsc.bcm.edu	hg19	11	17464413	17464413	+	Missense_Mutation	SNP	C	C	G			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	R495P	NM_000352	51	100	0	70	296	596	0	790
ADCY4	196883	hgsc.bcm.edu	hg19	14	24794660	24794660	+	Silent	SNP	G	G	C			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	P582P	NM_139247	63	154	0	149	328	677	0	1591
BRMS1	25855	hgsc.bcm.edu	hg19	11	66109606	66109606	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PANTSM-03A-01D	TARGET-10-PANTSM-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-03A-01D	TARGET-10-PANTSM-14A-01D	R34W	NM_015399	15	286	0	206	58	1208	0	513
CAMK1G	57172	hgsc.bcm.edu	hg19	1	209786142	209786142	+	Silent	SNP	G	G	T			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	S451S	NM_020439	11	149	0	153	36	693	2	1721
CNOT10	25904	hgsc.bcm.edu	hg19	3	32776307	32776307	+	Silent	SNP	G	G	A			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	S451S	NM_015442	123	251	0	167	389	780	0	761
CNTNAP4	85445	hgsc.bcm.edu	hg19	16	76495923	76495923	+	Silent	SNP	G	G	A			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	A468A	NM_033401	32	242	0	129	83	663	0	830
COL6A5	256076	hgsc.bcm.edu	hg19	3	130116707	130116707	+	Silent	SNP	C	C	T			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	N1283N	NM_153264	103	225	0	138	356	664	0	1162
CORIN	10699	hgsc.bcm.edu	hg19	4	47663844	47663844	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PANTSM-03A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-03A-01D	TARGET-10-PANTSM-14A-01D	C540F	NM_006587	77	177	0	174	299	624	3	1080
CORIN	10699	hgsc.bcm.edu	hg19	4	47663844	47663844	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	C540F	NM_006587	112	227	0	174	374	751	3	1080
CPS1	1373	hgsc.bcm.edu	hg19	2	211540487	211540487	+	Silent	SNP	C	C	T			TARGET-10-PANTSM-03A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-03A-01D	TARGET-10-PANTSM-14A-01D	N1399N	NM_001875	11	75	0	107	89	991	0	1314
CRAT	1384	hgsc.bcm.edu	hg19	9	131860625	131860625	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	V411M	NM_000755	48	105	0	64	309	659	0	493
CSNK2A3	283106	hgsc.bcm.edu	hg19	11	11374606	11374606	+	RNA	SNP	G	G	A			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	E1_exon	NR_002207	126	311	0	239	153	426	0	842
ENPP1	5167	hgsc.bcm.edu	hg19	6	132211630	132211630	+	Silent	SNP	A	A	C			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	P919P	NM_006208	111	223	0	150	376	745	0	1118
FAIM2	23017	hgsc.bcm.edu	hg19	12	50294950	50294950	+	Silent	SNP	C	C	T			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	A58A	NM_012306	17	36	0	14	334	633	1	615
FBN3	84467	hgsc.bcm.edu	hg19	19	8211040	8211040	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	T107M	NM_032447	23	45	0	28	246	552	0	362
FMR1	2332	hgsc.bcm.edu	hg19	X	147030326	147030326	+	Missense_Mutation	SNP	G	A	A			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	V621M	NM_002024	126	126	0	94	339	347	0	348
FOXN3	1112	hgsc.bcm.edu	hg19	14	89878824	89878824	+	5'UTR	SNP	C	C	G			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	E2_UTR_5	NM_005197	34	78	0	59	259	676	0	292
GALNT3	2591	hgsc.bcm.edu	hg19	2	166618472	166618472	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	R261W	NM_004482	52	596	0	425	36	751	0	612
GANC	2595	hgsc.bcm.edu	hg19	15	42632044	42632044	+	Missense_Mutation	SNP	A	A	C			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	Y674S	NM_198141	13	24	0	21	212	435	0	833
GDA	9615	hgsc.bcm.edu	hg19	9	74817560	74817560	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	D96N	NM_004293	114	224	1	179	284	502	1	607
GPR39	2863	hgsc.bcm.edu	hg19	2	133174802	133174802	+	Missense_Mutation	SNP	T	T	G			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	Y63D	NM_001508	15	269	0	171	29	589	0	714
HIC2	23119	hgsc.bcm.edu	hg19	22	21800818	21800819	+	Frame_Shift_Ins	INS	-	-	T			TARGET-10-PANTSM-03A-01D	TARGET-10-PANTSM-14A-01D	-	-	-	T	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-03A-01D	TARGET-10-PANTSM-14A-01D	R545fs	NM_015094	14	33	0	26	93	304	0	450
HIC2	23119	hgsc.bcm.edu	hg19	22	21800818	21800819	+	Frame_Shift_Ins	INS	-	-	T			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	-	-	-	T	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	R545fs	NM_015094	15	32	0	26	246	475	0	450
NYAP2	57624	hgsc.bcm.edu	hg19	2	226447104	226447104	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	P324L	NM_020864	35	74	0	33	250	489	1	663
LAMA1	284217	hgsc.bcm.edu	hg19	18	6961729	6961729	+	Silent	SNP	G	G	A			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	G2494G	NM_005559	48	112	0	112	342	705	0	930
CCDC166	100130274	hgsc.bcm.edu	hg19	8	144788939	144788939	+	Silent	SNP	C	C	G			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	P415P	NM_001162914	14	35	0	28	257	545	0	528
MBNL2	10150	hgsc.bcm.edu	hg19	13	98018739	98018739	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	A341T	NM_144778	90	175	0	131	277	566	2	1060
MCF2	4168	hgsc.bcm.edu	hg19	X	138687872	138687872	+	Silent	SNP	C	T	T			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	L579L	NM_001099855	279	283	0	193	361	365	0	601
MKI67	4288	hgsc.bcm.edu	hg19	10	129907162	129907162	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	R981H	NM_002417	20	297	0	190	34	732	1	1116
MORN1	79906	hgsc.bcm.edu	hg19	1	2317313	2317313	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	D128Y	NM_024848	78	168	0	119	338	671	0	316
MYO10	4651	hgsc.bcm.edu	hg19	5	16685916	16685916	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	Q1307H	NM_012334	112	217	1	152	304	623	2	702
NCKAP1L	3071	hgsc.bcm.edu	hg19	12	54930789	54930789	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	F1045L	NM_005337	248	483	0	348	402	809	1	1489
NOMO2	283820	hgsc.bcm.edu	hg19	16	18532172	18532172	+	Nonsense_Mutation	SNP	C	C	A			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	E730*	NM_001004060	184	716	0	443	233	910	0	1221
NRAS	4893	hgsc.bcm.edu	hg19	1	115258747	115258747	+	Missense_Mutation	SNP	C	C	G			TARGET-10-PANTSM-03A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-03A-01D	TARGET-10-PANTSM-14A-01D	G12A	NM_002524	34	283	0	342	58	707	0	1377
NRAS	4893	hgsc.bcm.edu	hg19	1	115258747	115258747	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PANTSM-03A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-03A-01D	TARGET-10-PANTSM-14A-01D	G12S	NM_002524	13	283	0	342	48	707	1	1377
NRAS	4893	hgsc.bcm.edu	hg19	1	115258747	115258747	+	Missense_Mutation	SNP	C	C	G			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	G12A	NM_002524	188	401	0	342	350	699	0	1377
NT5C2	22978	hgsc.bcm.edu	hg19	10	104899222	104899222	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	R39Q	NM_012229	401	429	0	315	697	769	0	1038
PALM2-AKAP2	445815	hgsc.bcm.edu	hg19	9	112898615	112898615	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	P264L	NM_147150	184	365	0	218	326	661	0	931
PARD3	56288	hgsc.bcm.edu	hg19	10	34649069	34649069	+	Missense_Mutation	SNP	C	C	G			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	R609P	NM_019619	137	322	0	240	364	712	0	1250
PEG3	5178	hgsc.bcm.edu	hg19	19	57329187	57329187	+	Silent	SNP	G	G	A			TARGET-10-PANTSM-03A-01D	TARGET-10-PANTSM-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-03A-01D	TARGET-10-PANTSM-14A-01D	D263D	NM_006210	17	148	0	117	100	692	0	934
PPP3CA	5530	hgsc.bcm.edu	hg19	4	101947137	101947137	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	P484L	NM_000944	191	401	0	242	361	687	1	1145
PTPN11	5781	hgsc.bcm.edu	hg19	12	112888163	112888163	+	Missense_Mutation	SNP	G	G	T			TARGET-10-PANTSM-03A-01D	TARGET-10-PANTSM-14A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-03A-01D	TARGET-10-PANTSM-14A-01D	G60V	NM_002834	106	231	0	272	404	804	4	913
PTPN11	5781	hgsc.bcm.edu	hg19	12	112888163	112888163	+	Missense_Mutation	SNP	G	G	T			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	G60V	NM_002834	114	262	0	272	365	768	4	913
R3HDM2	22864	hgsc.bcm.edu	hg19	12	57652719	57652719	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	R738Q	NM_014925	39	89	0	54	255	627	1	498
SLC28A2	9153	hgsc.bcm.edu	hg19	15	45558281	45558281	+	Silent	SNP	C	C	G			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	V288V	NM_004212	139	335	0	246	372	757	0	1103
SMARCB1	6598	hgsc.bcm.edu	hg19	22	24159110	24159110	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	R261H	NM_003073	67	134	0	89	331	654	0	1278
SNORA81	677847	hgsc.bcm.edu	hg19	3	186504495	186504495	+	RNA	SNP	C	C	A			TARGET-10-PANTSM-03A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-03A-01D	TARGET-10-PANTSM-14A-01D	E1_exon	NR_002989	106	227	0	162	374	833	0	993
SNORA81	677847	hgsc.bcm.edu	hg19	3	186504495	186504495	+	RNA	SNP	C	C	A			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	E1_exon	NR_002989	138	240	0	162	390	805	0	993
STRC	161497	hgsc.bcm.edu	hg19	15	43893734	43893734	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	R1521W	NM_153700	36	84	0	72	308	728	4	1211
SULT1B1	27284	hgsc.bcm.edu	hg19	4	70596359	70596359	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	E213G	NM_014465	201	524	0	407	309	784	0	967
TM7SF2	7108	hgsc.bcm.edu	hg19	11	64882440	64882440	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PANTSM-03A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-03A-01D	TARGET-10-PANTSM-14A-01D	A260V	NM_003273	77	160	0	147	241	479	2	718
TM7SF2	7108	hgsc.bcm.edu	hg19	11	64882440	64882440	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	A260V	NM_003273	117	228	0	147	271	584	2	718
DCSTAMP	81501	hgsc.bcm.edu	hg19	8	105360834	105360834	+	Silent	SNP	C	C	T			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	Y18Y	NM_030788	84	168	0	104	357	690	2	1419
TMEM14C	51522	hgsc.bcm.edu	hg19	6	10730864	10730864	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	K102E	NM_001165258	157	376	1	284	348	748	0	658
TMF1	7110	hgsc.bcm.edu	hg19	3	69077389	69077389	+	Silent	SNP	C	C	G			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	T884T	NM_007114	185	477	0	362	292	773	0	866
TP53	7157	hgsc.bcm.edu	hg19	17	7577548	7577548	+	Missense_Mutation	SNP	C	T	T			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	G245S	NM_000546	109	111	0	102	302	308	1	1860
TTBK2	146057	hgsc.bcm.edu	hg19	15	43038070	43038070	+	Missense_Mutation	SNP	C	C	G			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	G1220R	NM_173500	158	306	0	242	276	568	0	649
XPNPEP2	7512	hgsc.bcm.edu	hg19	X	128873174	128873174	+	5'UTR	SNP	G	G	C			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	E1_UTR_5	NM_003399	31	47	0	26	203	299	0	821
ZFYVE28	57732	hgsc.bcm.edu	hg19	4	2355785	2355785	+	Missense_Mutation	SNP	G	G	T			TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PANTSM-04A-01D	TARGET-10-PANTSM-14A-01D	L19M	NM_020972	10	20	0	7	312	651	1	972
ABCC6P1	653190	hgsc.bcm.edu	hg19	16	18602499	18602499	+	RNA	SNP	C	C	T			TARGET-10-PAPAGK-03A-01D	TARGET-10-PAPAGK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-03A-01D	TARGET-10-PAPAGK-10A-01D	E8_exon	NR_003569	8	48	0	47	132	649	2	948
ADAD1	132612	hgsc.bcm.edu	hg19	4	123342478	123342478	+	Missense_Mutation	SNP	G	G	C			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	R517P	NM_139243	110	328	0	429	276	801	0	820
ALK	238	hgsc.bcm.edu	hg19	2	29448339	29448339	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPAGK-03A-01D	TARGET-10-PAPAGK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-03A-01D	TARGET-10-PAPAGK-10A-01D	G1054S	NM_004304	13	69	0	55	130	680	0	688
ATF7	11016	hgsc.bcm.edu	hg19	12	53926376	53926377	+	Frame_Shift_Ins	INS	-	-	GTCCC			TARGET-10-PAPAGK-03A-01D	TARGET-10-PAPAGK-10A-01D	-	-	-	GTCCC	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-03A-01D	TARGET-10-PAPAGK-10A-01D	I242fs	NM_001130059	24	140	0	159	114	620	0	556
BLID	414899	hgsc.bcm.edu	hg19	11	121986641	121986641	+	5'UTR	SNP	T	T	C			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	E1_UTR_5	NM_001001786	10	24	0	37	291	763	0	766
BTBD11	121551	hgsc.bcm.edu	hg19	12	108035894	108035894	+	Silent	SNP	G	G	A			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	P493P	NM_001017523	158	425	0	543	310	801	2	1055
CNTNAP5	129684	hgsc.bcm.edu	hg19	2	125405388	125405388	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	R643W	NM_130773	17	51	0	43	253	652	2	780
DENND1B	163486	hgsc.bcm.edu	hg19	1	197576256	197576256	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	T290A	NM_144977	170	430	0	516	339	831	0	551
DNAJC8	22826	hgsc.bcm.edu	hg19	1	28530260	28530260	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	E213K	NM_014280	139	401	0	455	271	748	0	697
FAM32A	26017	hgsc.bcm.edu	hg19	19	16301697	16301697	+	Splice_Site	SNP	G	G	T			TARGET-10-PAPAGK-03A-01D	TARGET-10-PAPAGK-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-03A-01D	TARGET-10-PAPAGK-10A-01D	D91_E4splice	NM_014077	18	137	0	95	80	678	0	801
FAT1	2195	hgsc.bcm.edu	hg19	4	187540329	187540329	+	Missense_Mutation	SNP	C	C	G			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	V2471L	NM_005245	37	106	0	124	294	743	0	421
FCGBP	8857	hgsc.bcm.edu	hg19	19	40424170	40424170	+	Missense_Mutation	SNP	G	G	C			TARGET-10-PAPAGK-03A-01D	TARGET-10-PAPAGK-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-03A-01D	TARGET-10-PAPAGK-10A-01D	T678S	NM_003890	34	87	0	59	289	626	0	320
FCGBP	8857	hgsc.bcm.edu	hg19	19	40424170	40424170	+	Missense_Mutation	SNP	G	G	C			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	T678S	NM_003890	34	91	0	59	213	562	0	320
FLOT2	2319	hgsc.bcm.edu	hg19	17	27207608	27207608	+	Missense_Mutation	SNP	T	T	A			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	T	T	T	A	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	I420F	NM_004475	26	107	0	99	145	646	0	344
FLT3	2322	hgsc.bcm.edu	hg19	13	28592641	28592641	+	Missense_Mutation	SNP	T	T	A			TARGET-10-PAPAGK-03A-01D	TARGET-10-PAPAGK-10A-01D	T	T	T	A	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-03A-01D	TARGET-10-PAPAGK-10A-01D	D835V	NM_004119	48	215	0	232	139	703	0	811
GAS2L3	283431	hgsc.bcm.edu	hg19	12	101017839	101017839	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	P419L	NM_174942	39	141	0	166	270	752	0	553
GOLGB1	2804	hgsc.bcm.edu	hg19	3	121410152	121410155	+	Frame_Shift_Del	DEL	TCTT	TCTT	-			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	TCTT	TCTT	TCTT	-	TCTT	TCTT	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	K2681_K2682fs	NM_004487	126	384	0	537	257	1056	0	958
GPD1	2819	hgsc.bcm.edu	hg19	12	50503370	50503370	+	3'UTR	SNP	T	T	C			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	E8_UTR_3	NM_005276	7	17	0	42	249	667	0	1468
H1FOO	132243	hgsc.bcm.edu	hg19	3	129268176	129268176	+	Missense_Mutation	SNP	G	G	C			TARGET-10-PAPAGK-03A-01D	TARGET-10-PAPAGK-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-03A-01D	TARGET-10-PAPAGK-10A-01D	K237N	NM_153833	6	43	0	13	49	454	0	247
H1FOO	132243	hgsc.bcm.edu	hg19	3	129268176	129268176	+	Missense_Mutation	SNP	G	G	C			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	K237N	NM_153833	10	24	0	13	178	492	0	247
IKZF1	10320	hgsc.bcm.edu	hg19	7	50468155	50468155	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	C464R	NM_006060	10	23	0	18	173	494	0	759
MUC16	94025	hgsc.bcm.edu	hg19	19	9064937	9064937	+	Silent	SNP	T	T	C			TARGET-10-PAPAGK-03A-01D	TARGET-10-PAPAGK-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-03A-01D	TARGET-10-PAPAGK-10A-01D	K7503K	NM_024690	103	400	0	363	214	766	0	1419
MUC16	94025	hgsc.bcm.edu	hg19	19	9064937	9064937	+	Silent	SNP	T	T	C			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	K7503K	NM_024690	111	319	0	363	308	769	0	1419
NRAS	4893	hgsc.bcm.edu	hg19	1	115258748	115258748	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPAGK-03A-01D	TARGET-10-PAPAGK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-03A-01D	TARGET-10-PAPAGK-10A-01D	G12S	NM_002524	29	385	0	355	54	683	0	871
NRAS	4893	hgsc.bcm.edu	hg19	1	115258748	115258748	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	G12S	NM_002524	154	402	0	355	288	745	0	871
NT5C2	22978	hgsc.bcm.edu	hg19	10	104857107	104857107	+	Missense_Mutation	SNP	G	G	C			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	R238G	NM_012229	99	326	0	392	363	884	0	471
PPP1R16B	26051	hgsc.bcm.edu	hg19	20	37524260	37524260	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPAGK-03A-01D	TARGET-10-PAPAGK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-03A-01D	TARGET-10-PAPAGK-10A-01D	A125V	NM_015568	31	148	0	146	117	641	0	289
PPP2CA	5515	hgsc.bcm.edu	hg19	5	133536739	133536739	+	Silent	SNP	C	C	T			TARGET-10-PAPAGK-03A-01D	TARGET-10-PAPAGK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-03A-01D	TARGET-10-PAPAGK-10A-01D	S171S	NM_002715	69	353	0	328	172	776	2	844
PRR21	643905	hgsc.bcm.edu	hg19	2	240982127	240982127	+	Silent	SNP	A	A	G			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	P91P	NM_001080835	26	35	0	35	218	330	0	496
PRR21	643905	hgsc.bcm.edu	hg19	2	240982159	240982159	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	R81W	NM_001080835	77	128	0	87	227	367	3	601
RCC2	55920	hgsc.bcm.edu	hg19	1	17748769	17748769	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	A225V	NM_018715	29	91	0	87	241	770	3	621
RNF144B	255488	hgsc.bcm.edu	hg19	6	18465282	18465282	+	Missense_Mutation	SNP	A	A	C			TARGET-10-PAPAGK-03A-01D	TARGET-10-PAPAGK-10A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-03A-01D	TARGET-10-PAPAGK-10A-01D	D299A	NM_182757	47	302	0	159	40	647	0	449
RNF144B	255488	hgsc.bcm.edu	hg19	6	18465282	18465282	+	Missense_Mutation	SNP	A	A	C			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	D299A	NM_182757	85	192	0	159	233	642	0	449
RPS6KA6	27330	hgsc.bcm.edu	hg19	X	83319972	83319972	+	Intron	SNP	G	G	T			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	K704_E21splice_region	NM_014496	108	363	0	471	250	640	1	686
RYR2	6262	hgsc.bcm.edu	hg19	1	237758860	237758860	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	R1500H	NM_001035	104	269	1	179	273	692	3	1243
SERPINB7	8710	hgsc.bcm.edu	hg19	18	61460429	61460430	+	Frame_Shift_Ins	INS	-	-	T			TARGET-10-PAPAGK-03A-01D	TARGET-10-PAPAGK-10A-01D	-	-	-	T	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-03A-01D	TARGET-10-PAPAGK-10A-01D	S85fs	NM_003784	178	659	0	596	172	830	0	712
SERPINB7	8710	hgsc.bcm.edu	hg19	18	61460429	61460430	+	Frame_Shift_Ins	INS	-	-	T			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	-	-	-	T	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	S85fs	NM_003784	157	515	0	596	244	763	0	712
SHROOM2	357	hgsc.bcm.edu	hg19	X	9900426	9900426	+	Nonsense_Mutation	SNP	C	C	T			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	Q1035*	NM_001649	7	20	0	32	195	525	1	273
SOHLH1	402381	hgsc.bcm.edu	hg19	9	138585622	138585622	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	A329T	NM_001101677	11	36	1	17	207	825	0	171
SYNE1	23345	hgsc.bcm.edu	hg19	6	152589245	152589245	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	R6183H	NM_033071	26	296	0	232	34	729	2	906
TMTC1	83857	hgsc.bcm.edu	hg19	12	29725070	29725070	+	Missense_Mutation	SNP	C	C	G			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	K392N	NM_175861	160	457	0	489	290	741	0	857
TNFAIP6	7130	hgsc.bcm.edu	hg19	2	152222572	152222572	+	Missense_Mutation	SNP	T	T	G			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	F79V	NM_007115	119	325	0	333	304	814	0	558
TRAK2	66008	hgsc.bcm.edu	hg19	2	202259537	202259537	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	R320Q	NM_015049	237	521	1	609	339	872	1	576
TRRAP	8295	hgsc.bcm.edu	hg19	7	98545940	98545940	+	Missense_Mutation	SNP	A	A	C			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	T1524P	NM_003496	66	166	1	151	267	672	0	506
XPO1	7514	hgsc.bcm.edu	hg19	2	61719472	61719472	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPAGK-04A-01D	TARGET-10-PAPAGK-10A-01D	E571K	NM_003400	44	223	0	364	137	739	0	500
ABCA7	10347	hgsc.bcm.edu	hg19	19	1049320	1049320	+	Silent	SNP	G	G	C			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	L812L	NM_019112	3	7	0	35	215	469	0	20
AKAP13	11214	hgsc.bcm.edu	hg19	15	86284546	86284546	+	Silent	SNP	G	G	T			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	V2630V	NM_006738	4	11	0	25	308	625	0	425
ALDH3A1	218	hgsc.bcm.edu	hg19	17	19646690	19646690	+	Silent	SNP	C	C	T			TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	A83A	NM_001135168	67	119	0	110	225	525	0	617
ALDH3A1	218	hgsc.bcm.edu	hg19	17	19646690	19646690	+	Silent	SNP	C	C	T			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	A83A	NM_001135168	3	18	0	110	110	459	0	617
C2CD3	26005	hgsc.bcm.edu	hg19	11	73814442	73814442	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	S772G	NM_015531	27	742	0	696	22	537	0	2160
CCDC160	347475	hgsc.bcm.edu	hg19	X	133378983	133378983	+	Silent	SNP	C	C	T			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	S51S	NM_001101357	51	158	0	122	346	841	0	964
CSF1R	1436	hgsc.bcm.edu	hg19	5	149456961	149456961	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	R256H	NM_005211	351	945	0	748	261	568	0	1259
CSF1R	1436	hgsc.bcm.edu	hg19	5	149456961	149456961	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	R256H	NM_005211	256	587	0	748	367	784	0	1259
CYP2A6	1548	hgsc.bcm.edu	hg19	19	41350648	41350648	+	Silent	SNP	A	A	G			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	S397S	NM_000762	28	88	1	108	133	816	0	561
DGAT2L6	347516	hgsc.bcm.edu	hg19	X	69420309	69420309	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	G158S	NM_198512	139	355	0	388	219	502	0	1154
DGAT2L6	347516	hgsc.bcm.edu	hg19	X	69420309	69420309	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	G158S	NM_198512	177	398	0	388	251	666	0	1154
DIAPH2	1730	hgsc.bcm.edu	hg19	X	95990773	95990773	+	Missense_Mutation	SNP	C	C	G			TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	T50S	NM_006729	23	728	0	811	15	527	1	1675
DNAJC5G	285126	hgsc.bcm.edu	hg19	2	27500683	27500683	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	R59W	NM_173650	57	168	0	158	218	530	4	736
DNAJC5G	285126	hgsc.bcm.edu	hg19	2	27500683	27500683	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	R59W	NM_173650	59	113	0	158	364	740	4	736
DNMT1	1786	hgsc.bcm.edu	hg19	19	10291226	10291226	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	V82A	NM_001379	17	174	0	124	67	776	0	894
EXD1	161829	hgsc.bcm.edu	hg19	15	41476489	41476489	+	Silent	SNP	T	T	C			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	L395L	NM_152596	106	233	0	170	400	806	0	1048
FIGN	55137	hgsc.bcm.edu	hg19	2	164466186	164466186	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	S719I	NM_018086	25	60	1	60	282	613	0	940
GGCT	79017	hgsc.bcm.edu	hg19	7	30536576	30536576	+	3'UTR	SNP	C	C	A			TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	E4_UTR_3	NM_024051	23	57	0	78	206	537	0	937
GGCT	79017	hgsc.bcm.edu	hg19	7	30536576	30536576	+	3'UTR	SNP	C	C	A			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	E4_UTR_3	NM_024051	65	140	0	78	378	803	0	937
GJB3	2707	hgsc.bcm.edu	hg19	1	35251131	35251131	+	Silent	SNP	C	C	A			TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	G256G	NM_024009	6	30	0	33	187	488	0	1023
GJB3	2707	hgsc.bcm.edu	hg19	1	35251131	35251131	+	Silent	SNP	C	C	A			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	G256G	NM_024009	7	16	0	33	263	577	0	1023
HCN3	57657	hgsc.bcm.edu	hg19	1	155254476	155254476	+	Silent	SNP	C	C	T			TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	Y339Y	NM_020897	35	69	0	49	192	422	0	903
HCN3	57657	hgsc.bcm.edu	hg19	1	155254476	155254476	+	Silent	SNP	C	C	T			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	Y339Y	NM_020897	9	19	0	49	240	506	0	903
HMCN1	83872	hgsc.bcm.edu	hg19	1	186023068	186023068	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	A2271V	NM_031935	180	435	1	466	318	714	1	1131
HRG	3273	hgsc.bcm.edu	hg19	3	186390619	186390619	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	R201Q	NM_000412	146	295	0	313	336	698	0	1635
HSPB7	27129	hgsc.bcm.edu	hg19	1	16344280	16344280	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	S60L	NM_014424	7	17	0	74	314	655	0	550
JAK2	3717	hgsc.bcm.edu	hg19	9	5089726	5089726	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	T875N	NM_004972	317	433	1	395	523	676	0	870
JAK2	3717	hgsc.bcm.edu	hg19	9	5089726	5089726	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	T875N	NM_004972	392	429	1	395	724	773	0	870
KCNC3	3748	hgsc.bcm.edu	hg19	19	50827114	50827114	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	R366C	NM_004977	15	213	0	152	19	510	0	332
KCNJ12	3768	hgsc.bcm.edu	hg19	17	21318754	21318754	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	G34S	NM_021012	3	9	0	34	239	1285	0	796
KDM3B	51780	hgsc.bcm.edu	hg19	5	137721782	137721782	+	Silent	SNP	C	C	G			TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	G284G	NM_016604	96	217	0	169	234	529	0	594
KDM3B	51780	hgsc.bcm.edu	hg19	5	137721782	137721782	+	Silent	SNP	C	C	G			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	G284G	NM_016604	60	141	0	169	303	628	0	594
SLCO1B7	338821	hgsc.bcm.edu	hg19	12	21205054	21205054	+	Silent	SNP	A	A	T			TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	A	A	A	T	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	V405V	NM_001009562	111	287	0	287	229	554	1	882
SLCO1B7	338821	hgsc.bcm.edu	hg19	12	21205054	21205054	+	Silent	SNP	A	A	T			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	A	A	A	T	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	V405V	NM_001009562	175	352	0	287	316	693	1	882
MFSD2A	84879	hgsc.bcm.edu	hg19	1	40430940	40430940	+	Silent	SNP	C	C	T			TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	P137P	NM_032793	121	259	0	189	226	527	0	1430
MFSD2A	84879	hgsc.bcm.edu	hg19	1	40430940	40430940	+	Silent	SNP	C	C	T			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	P137P	NM_032793	44	104	0	189	353	732	0	1430
KMT2B	9757	hgsc.bcm.edu	hg19	12	49447088	49447089	+	Frame_Shift_Ins	INS	-	-	TCCG			TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	-	-	-	TCCG	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	S286fs	NM_003482	85	280	0	260	192	543	0	2896
KMT2B	9757	hgsc.bcm.edu	hg19	12	49447088	49447089	+	Frame_Shift_Ins	INS	-	-	TCCG			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	-	-	-	TCCG	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	S286fs	NM_003482	84	206	0	260	306	701	0	2896
NPHP3	27031	hgsc.bcm.edu	hg19	3	132431961	132431961	+	Intron	SNP	T	T	C			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	P372_E6splice_region	NM_153240	96	218	0	106	364	766	0	814
NRP2	8828	hgsc.bcm.edu	hg19	2	206605358	206605358	+	Missense_Mutation	SNP	G	G	T			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	R421L	NM_003872	25	58	0	78	304	607	1	621
NT5C1B	93034	hgsc.bcm.edu	hg19	2	18768359	18768363	+	Frame_Shift_Del	DEL	ACAAA	ACAAA	-			TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	ACAAA	ACAAA	ACAAA	-	ACAAA	ACAAA	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	L66_C67fs	NM_001002006	9	34	0	48	167	473	0	831
NT5C1B	93034	hgsc.bcm.edu	hg19	2	18768359	18768363	+	Frame_Shift_Del	DEL	ACAAA	ACAAA	-			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	ACAAA	ACAAA	ACAAA	-	ACAAA	ACAAA	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	L66_C67fs	NM_001002006	6	14	0	48	269	607	0	831
PAX5	5079	hgsc.bcm.edu	hg19	9	37020768	37020768	+	Missense_Mutation	SNP	A	A	C			TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	V26G	NM_016734	44	60	0	60	214	287	3	448
PAX5	5079	hgsc.bcm.edu	hg19	9	37020768	37020768	+	Missense_Mutation	SNP	A	A	C			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	V26G	NM_016734	24	28	0	60	361	407	3	448
POLR2A	5430	hgsc.bcm.edu	hg19	17	7414869	7414869	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	V1355I	NM_000937	57	141	0	97	211	473	0	1034
POLR2A	5430	hgsc.bcm.edu	hg19	17	7414869	7414869	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	V1355I	NM_000937	28	29	0	97	298	332	0	1034
PRKCZ	5590	hgsc.bcm.edu	hg19	1	2116459	2116459	+	3'UTR	SNP	G	G	A			TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	E18_UTR_3	NM_002744	65	197	0	131	221	515	0	317
PRKCZ	5590	hgsc.bcm.edu	hg19	1	2116459	2116459	+	3'UTR	SNP	G	G	A			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	E18_UTR_3	NM_002744	38	74	0	131	311	643	0	317
PTPN13	5783	hgsc.bcm.edu	hg19	4	87622554	87622554	+	Silent	SNP	T	T	G			TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	R265R	NM_006264	65	157	0	146	219	579	0	1267
PTPN13	5783	hgsc.bcm.edu	hg19	4	87622554	87622554	+	Silent	SNP	T	T	G			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	R265R	NM_006264	72	159	0	146	382	771	0	1267
PTPRS	5802	hgsc.bcm.edu	hg19	19	5221097	5221097	+	Silent	SNP	G	G	A			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	N1123N	NM_002850	11	18	0	65	256	548	1	280
QRICH2	84074	hgsc.bcm.edu	hg19	17	74288139	74288139	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	G724V	NM_032134	98	116	0	88	444	524	0	435
QRICH2	84074	hgsc.bcm.edu	hg19	17	74288139	74288139	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	G724V	NM_032134	45	52	0	88	608	657	0	435
RILPL2	196383	hgsc.bcm.edu	hg19	12	123915046	123915047	+	Intron	INS	-	-	TCCAGT			TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	-	-	-	TCCAGT	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	K163_E2splice_region	NM_145058	31	96	0	89	166	486	0	396
RILPL2	196383	hgsc.bcm.edu	hg19	12	123915046	123915047	+	Intron	INS	-	-	TCCAGT			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	-	-	-	TCCAGT	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	K163_E2splice_region	NM_145058	12	41	0	89	234	591	0	396
RIPK3	11035	hgsc.bcm.edu	hg19	14	24808348	24808348	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	P115L	NM_006871	16	36	0	72	277	609	0	889
SLC12A2	6558	hgsc.bcm.edu	hg19	5	127420330	127420330	+	Silent	SNP	G	G	A			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	R228R	NM_001046	6	21	0	135	261	512	1	193
SPRY3	10251	hgsc.bcm.edu	hg19	X	155003923	155003923	+	Missense_Mutation	SNP	G	G	C			TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	K130N	NM_005840	72	184	0	161	166	494	0	1452
SPRY3	10251	hgsc.bcm.edu	hg19	X	155003923	155003923	+	Missense_Mutation	SNP	G	G	C			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	K130N	NM_005840	37	113	0	161	252	599	0	1452
TMC1	117531	hgsc.bcm.edu	hg19	9	75445415	75445415	+	Silent	SNP	G	G	A			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	A726A	NM_138691	15	257	0	179	20	738	0	1068
TP53	7157	hgsc.bcm.edu	hg19	17	7577538	7577538	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	R248Q	NM_000546	42	48	0	143	260	302	3	1764
UBR4	23352	hgsc.bcm.edu	hg19	1	19433107	19433107	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	S4117P	NM_020765	29	103	1	79	207	538	6	1358
UBR4	23352	hgsc.bcm.edu	hg19	1	19433107	19433107	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	S4117P	NM_020765	24	70	1	79	286	625	6	1358
USP13	8975	hgsc.bcm.edu	hg19	3	179447977	179447977	+	Splice_Site	SNP	G	G	C			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	Y364_E9splice	NM_003940	273	628	0	606	355	709	0	1072
VPS13B	157680	hgsc.bcm.edu	hg19	8	100133661	100133661	+	Silent	SNP	G	G	A			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	T398T	NM_181661	85	442	0	389	105	733	0	1050
WDFY4	57705	hgsc.bcm.edu	hg19	10	50036951	50036951	+	Intron	SNP	A	A	G			TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	V2114_E37splice_region	NM_020945	25	54	0	72	119	309	2	252
WDFY4	57705	hgsc.bcm.edu	hg19	10	50036951	50036951	+	Intron	SNP	A	A	G			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	V2114_E37splice_region	NM_020945	33	70	0	72	177	383	2	252
WHSC1	7468	hgsc.bcm.edu	hg19	4	1962801	1962801	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-03A-01D	TARGET-10-PAPEFH-14A-01D	E1099K	NM_001042424	230	514	0	395	223	520	1	565
WHSC1	7468	hgsc.bcm.edu	hg19	4	1962801	1962801	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	E1099K	NM_001042424	112	230	0	395	359	751	1	565
YIPF6	286451	hgsc.bcm.edu	hg19	X	67742717	67742717	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPEFH-04A-01D	TARGET-10-PAPEFH-14A-01D	R184W	NM_173834	60	753	1	759	58	658	2	1336
ABCC3	8714	hgsc.bcm.edu	hg19	17	48733267	48733267	+	Silent	SNP	G	G	A			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	V40V	NM_003786	27	135	0	141	156	806	1	609
ALG13	79868	hgsc.bcm.edu	hg19	X	110980098	110980098	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	G896S	NM_001099922	32	459	0	362	65	829	0	647
ASXL3	80816	hgsc.bcm.edu	hg19	18	31314300	31314300	+	Missense_Mutation	SNP	C	C	G			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	R335G	NM_030632	58	530	0	590	67	806	0	797
BBS9	27241	hgsc.bcm.edu	hg19	7	33407475	33407475	+	Splice_Site	SNP	G	G	A			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	Q557_E15splice	NM_014451	45	558	0	674	50	760	0	949
C10orf12	26148	hgsc.bcm.edu	hg19	10	98741721	98741721	+	Nonsense_Mutation	SNP	C	C	T			TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	R192*	NM_015652	11	138	0	148	26	529	0	365
NOXRED1	122945	hgsc.bcm.edu	hg19	14	77873086	77873086	+	Silent	SNP	G	G	A			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	T221T	NM_001113475	15	178	1	129	51	926	0	1180
CD97	976	hgsc.bcm.edu	hg19	19	14518037	14518039	+	In_Frame_Del	DEL	AGA	AGA	-			TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	AGA	AGA	AGA	-	AGA	AGA	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	K791_K792>K	NM_078481	18	41	0	71	153	436	0	164
CD97	976	hgsc.bcm.edu	hg19	19	14518037	14518039	+	In_Frame_Del	DEL	AGA	AGA	-			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	AGA	AGA	AGA	-	AGA	AGA	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	K791_K792>K	NM_078481	18	41	0	71	133	718	0	164
CREBBP	1387	hgsc.bcm.edu	hg19	16	3788617	3788617	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	R1446H	NM_004380	164	336	0	414	381	781	3	529
CRLF3	51379	hgsc.bcm.edu	hg19	17	29112934	29112934	+	Intron	SNP	T	T	G			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	N357_E7splice_region	NM_015986	22	310	0	412	98	844	0	706
CYFIP1	23191	hgsc.bcm.edu	hg19	15	22993144	22993144	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	E1011K	NM_014608	11	49	0	21	53	408	1	261
DBT	1629	hgsc.bcm.edu	hg19	1	100684204	100684204	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	R178H	NM_001918	239	499	2	488	264	613	3	407
DBT	1629	hgsc.bcm.edu	hg19	1	100684204	100684204	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	R178H	NM_001918	127	469	2	488	176	748	3	407
DNAH9	1770	hgsc.bcm.edu	hg19	17	11835517	11835517	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	A4098T	NM_001372	64	257	0	177	166	852	0	572
DNAJC21	134218	hgsc.bcm.edu	hg19	5	34936370	34936370	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	T146M	NM_001012339	71	669	3	771	74	733	2	890
DRAM1	55332	hgsc.bcm.edu	hg19	12	102302127	102302127	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	A169V	NM_018370	161	396	0	364	224	559	0	979
EBF2	64641	hgsc.bcm.edu	hg19	8	25745360	25745360	+	Missense_Mutation	SNP	C	C	G			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	E294Q	NM_022659	23	203	0	163	74	697	0	653
EBF2	64641	hgsc.bcm.edu	hg19	8	25745361	25745361	+	Silent	SNP	G	G	A			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	S293S	NM_022659	21	167	0	146	73	696	1	651
ERAL1	26284	hgsc.bcm.edu	hg19	17	27185588	27185588	+	Intron	SNP	G	G	T			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	V238_E7splice_region	NM_005702	24	125	0	78	174	906	1	951
FAM155A	728215	hgsc.bcm.edu	hg19	13	108518870	108518870	+	Silent	SNP	G	G	A			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	N25N	NM_001080396	20	76	0	71	128	581	0	314
FBN1	2200	hgsc.bcm.edu	hg19	15	48936810	48936810	+	Missense_Mutation	SNP	G	G	T			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	L53I	NM_000138	21	128	0	138	90	481	0	314
GBP7	388646	hgsc.bcm.edu	hg19	1	89599144	89599144	+	Intron	SNP	C	C	T			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	A489_E10splice_region	NM_207398	17	428	0	398	27	794	1	1141
GOLGA3	2802	hgsc.bcm.edu	hg19	12	133398574	133398574	+	Intron	SNP	C	C	T			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	C45_E2splice_region	NM_005895	6	32	0	43	40	629	0	397
GPR144	347088	hgsc.bcm.edu	hg19	9	127214938	127214938	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	R92W	NM_001161808	10	36	1	41	166	585	0	141
GRIA2	2891	hgsc.bcm.edu	hg19	4	158284008	158284008	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	G822R	NM_001083619	67	454	0	442	89	561	0	893
GRK1	6011	hgsc.bcm.edu	hg19	13	114324115	114324115	+	Silent	SNP	C	C	T			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	N271N	NM_002929	8	85	0	94	21	634	0	176
IL27RA	9466	hgsc.bcm.edu	hg19	19	14159986	14159986	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	T421M	NM_004843	27	70	0	72	117	313	0	331
ITPRIPL2	162073	hgsc.bcm.edu	hg19	16	19127323	19127323	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	R514C	NM_001034841	7	42	0	54	97	569	0	188
KALRN	8997	hgsc.bcm.edu	hg19	3	124165073	124165073	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	R1125W	NM_001024660	33	195	1	185	77	492	4	774
KRAS	3845	hgsc.bcm.edu	hg19	12	25378562	25378562	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	A146T	NM_033360	25	1213	1	1227	13	559	0	831
LGMN	5641	hgsc.bcm.edu	hg19	14	93178043	93178043	+	Silent	SNP	C	C	T			TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	S260S	NM_001008530	23	221	1	160	39	704	2	475
APOOP5	644649	hgsc.bcm.edu	hg19	16	59788709	59788709	+	RNA	SNP	C	C	A			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	E1_exon	NR_028471	26	136	0	109	131	633	0	732
LRRTM4	80059	hgsc.bcm.edu	hg19	2	77745759	77745759	+	Silent	SNP	G	G	A			TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	G412G	NM_024993	27	372	1	370	35	550	0	668
MCF2	4168	hgsc.bcm.edu	hg19	X	138667305	138667305	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	S949P	NM_001099855	331	1210	1	863	215	839	0	1057
MEI1	150365	hgsc.bcm.edu	hg19	22	42172199	42172199	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	G880S	NM_152513	64	159	2	161	176	494	0	743
MSH6	2956	hgsc.bcm.edu	hg19	2	48028136	48028136	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	R1005Q	NM_000179	25	233	0	217	70	773	0	1750
NRAS	4893	hgsc.bcm.edu	hg19	1	115258744	115258744	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	G13D	NM_002524	9	461	0	394	17	561	1	1029
NRAS	4893	hgsc.bcm.edu	hg19	1	115258744	115258744	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	G13D	NM_002524	74	341	0	394	189	752	1	1029
NT5C2	22978	hgsc.bcm.edu	hg19	10	104852955	104852955	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	R367Q	NM_012229	12	369	0	362	40	797	0	462
NT5C2	22978	hgsc.bcm.edu	hg19	10	104857106	104857106	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	R238Q	NM_012229	12	383	1	489	42	841	1	652
OR11H1	81061	hgsc.bcm.edu	hg19	22	16449602	16449602	+	Missense_Mutation	SNP	C	C	G			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	R68P	NM_001005239	39	393	1	375	71	624	0	870
PPM1H	57460	hgsc.bcm.edu	hg19	12	63131312	63131312	+	Silent	SNP	G	G	A			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	P308P	NM_020700	26	116	1	142	167	634	0	1242
PROM2	150696	hgsc.bcm.edu	hg19	2	95942372	95942372	+	Missense_Mutation	SNP	C	C	G			TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	L217V	NM_001165978	13	73	0	90	113	481	0	123
PSMG3	84262	hgsc.bcm.edu	hg19	7	1608937	1608937	+	Silent	SNP	C	C	T			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	T13T	NM_032302	5	10	0	16	72	556	0	238
PTPN11	5781	hgsc.bcm.edu	hg19	12	112926884	112926884	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	S502P	NM_002834	32	155	1	186	140	583	0	1355
RIT1	6016	hgsc.bcm.edu	hg19	1	155874261	155874261	+	Missense_Mutation	SNP	C	C	G			TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	M90I	NM_006912	62	182	0	248	210	580	0	879
RRAGB	10325	hgsc.bcm.edu	hg19	X	55777546	55777546	+	Missense_Mutation	SNP	C	C	G			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	R205G	NM_016656	98	1258	0	1211	62	859	1	399
RRN3	54700	hgsc.bcm.edu	hg19	16	15165100	15165100	+	Silent	SNP	T	T	C			TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	A379A	NM_018427	36	110	1	129	189	532	3	760
SCN5A	6331	hgsc.bcm.edu	hg19	3	38629059	38629059	+	Silent	SNP	G	G	A			TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	F756F	NM_198056	26	221	0	215	47	519	0	720
SIKE1	80143	hgsc.bcm.edu	hg19	1	115321808	115321808	+	Silent	SNP	C	C	T			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	A121A	NM_025073	13	411	0	419	37	754	0	656
SLC12A2	6558	hgsc.bcm.edu	hg19	5	127483317	127483317	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	M593V	NM_001046	112	533	1	542	181	774	0	743
SLC2A4	6517	hgsc.bcm.edu	hg19	17	7187171	7187171	+	Silent	SNP	C	C	T			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	G146G	NM_001042	14	53	0	34	163	824	3	453
SLC30A5	64924	hgsc.bcm.edu	hg19	5	68411996	68411996	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	V343I	NM_022902	53	612	0	656	61	747	0	749
SLC5A11	115584	hgsc.bcm.edu	hg19	16	24902200	24902200	+	Silent	SNP	G	G	A			TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	A225A	NM_052944	11	79	0	74	85	527	3	1456
SNAP91	9892	hgsc.bcm.edu	hg19	6	84333054	84333054	+	Missense_Mutation	SNP	C	C	G			TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	G258A	NM_014841	117	840	0	638	116	827	0	653
SNORA36B	677818	hgsc.bcm.edu	hg19	1	220373990	220373990	+	RNA	SNP	T	T	A			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	T	T	T	A	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	E1_exon	NR_002994	74	343	0	427	171	767	0	511
TGFBRAP1	9392	hgsc.bcm.edu	hg19	2	105897106	105897106	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	R399Q	NM_004257	11	198	1	168	51	705	0	447
TRIP12	9320	hgsc.bcm.edu	hg19	2	230659908	230659908	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	G1244R	NM_004238	14	190	0	227	70	742	0	468
VRK2	7444	hgsc.bcm.edu	hg19	2	58386778	58386778	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	I493V	NM_006296	119	1096	0	1357	60	737	0	773
WNK2	65268	hgsc.bcm.edu	hg19	9	96055347	96055347	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-03A-01D	TARGET-10-PAPJIB-14A-01D	T1867M	NM_006648	6	17	0	15	178	498	0	176
ZNF211	10520	hgsc.bcm.edu	hg19	19	58152655	58152655	+	Silent	SNP	G	G	A			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	T280T	NM_006385	10	148	0	159	67	692	0	607
ZNF215	7762	hgsc.bcm.edu	hg19	11	6977311	6977311	+	Missense_Mutation	SNP	G	G	C			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	R368P	NM_013250	22	180	0	189	56	712	0	1046
ZNF98	148198	hgsc.bcm.edu	hg19	19	22605031	22605031	+	5'UTR	SNP	G	G	A			TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPJIB-04A-01D	TARGET-10-PAPJIB-14A-01D	E1_UTR_5	NM_001098626	17	60	0	68	126	481	0	338
AOC1	26	hgsc.bcm.edu	hg19	7	150554574	150554574	+	Missense_Mutation	SNP	T	T	G			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	V339G	NM_001091	7	9	0	16	153	358	0	604
AOC1	26	hgsc.bcm.edu	hg19	7	150554574	150554574	+	Missense_Mutation	SNP	T	T	G			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	V339G	NM_001091	11	25	0	16	145	284	0	604
ADRB2	154	hgsc.bcm.edu	hg19	5	148207687	148207687	+	3'UTR	SNP	G	G	A			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	E1_UTR_3	NM_000024	7	29	0	16	200	447	1	725
ADRB2	154	hgsc.bcm.edu	hg19	5	148207687	148207687	+	3'UTR	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	E1_UTR_3	NM_000024	6	19	0	16	160	423	1	725
AKAP13	11214	hgsc.bcm.edu	hg19	15	86270413	86270413	+	Silent	SNP	C	C	T			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	V2317V	NM_006738	18	113	0	108	114	561	0	1352
ANK3	288	hgsc.bcm.edu	hg19	10	61830950	61830950	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	R3230H	NM_020987	20	116	0	132	70	441	2	817
ANO4	121601	hgsc.bcm.edu	hg19	12	101491710	101491710	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	E630K	NM_178826	105	229	0	188	226	560	0	717
ANO4	121601	hgsc.bcm.edu	hg19	12	101491710	101491710	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	E630K	NM_178826	93	212	0	188	201	488	0	717
ANO9	338440	hgsc.bcm.edu	hg19	11	428175	428175	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	R416Q	NM_001012302	21	307	0	203	14	503	0	40
ANXA5	308	hgsc.bcm.edu	hg19	4	122605889	122605889	+	Silent	SNP	G	G	A			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	S44S	NM_001154	91	224	0	266	228	550	0	1033
ANXA5	308	hgsc.bcm.edu	hg19	4	122605889	122605889	+	Silent	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	S44S	NM_001154	103	265	0	266	174	438	0	1033
APOBEC3B	9582	hgsc.bcm.edu	hg19	22	39378433	39378433	+	5'UTR	SNP	G	G	A			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	E1_UTR_5	NM_004900	29	34	0	41	182	219	0	510
APOBEC3B	9582	hgsc.bcm.edu	hg19	22	39378433	39378433	+	5'UTR	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	E1_UTR_5	NM_004900	41	46	0	41	157	192	0	510
ATP8A2	51761	hgsc.bcm.edu	hg19	13	26343231	26343231	+	Missense_Mutation	SNP	G	G	C			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	R811P	NM_016529	5	38	0	29	35	439	0	881
BEST2	54831	hgsc.bcm.edu	hg19	19	12866422	12866422	+	Intron	SNP	T	T	C			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	V239_E6splice_region	NM_017682	15	57	0	66	178	463	0	1675
BEST2	54831	hgsc.bcm.edu	hg19	19	12866422	12866422	+	Intron	SNP	T	T	C			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	V239_E6splice_region	NM_017682	23	80	0	66	163	410	0	1675
BMPR2	659	hgsc.bcm.edu	hg19	2	203384918	203384918	+	Nonsense_Mutation	SNP	C	C	T			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	R321*	NM_001204	51	308	0	275	81	514	1	685
BTK	695	hgsc.bcm.edu	hg19	X	100611762	100611762	+	Intron	SNP	T	T	G			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	M450_E14splice_region	NM_000061	39	320	0	294	65	507	0	1172
CACNA1E	777	hgsc.bcm.edu	hg19	1	181701992	181701992	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	R924C	NM_000721	5	8	0	19	184	403	1	1095
CACNA1E	777	hgsc.bcm.edu	hg19	1	181701992	181701992	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	R924C	NM_000721	7	17	0	19	178	438	1	1095
CEP112	201134	hgsc.bcm.edu	hg19	17	63746823	63746823	+	Missense_Mutation	SNP	T	T	A			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	T	T	T	A	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	Q805L	NM_145036	321	828	0	768	268	585	0	1661
CEP112	201134	hgsc.bcm.edu	hg19	17	63746823	63746823	+	Missense_Mutation	SNP	T	T	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	T	T	T	A	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	Q805L	NM_145036	194	751	0	768	126	484	0	1661
CCL15-CCL14	348249	hgsc.bcm.edu	hg19	17	34328599	34328599	+	RNA	SNP	C	C	A			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	E1_exon	Unknown	10	18	0	19	183	456	0	869
CCL15-CCL14	348249	hgsc.bcm.edu	hg19	17	34328599	34328599	+	RNA	SNP	C	C	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	E1_exon	Unknown	5	18	0	19	180	430	0	869
CEP152	22995	hgsc.bcm.edu	hg19	15	49054594	49054594	+	Silent	SNP	G	G	A			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	T852T	NM_014985	164	381	0	290	260	573	0	1035
CEP152	22995	hgsc.bcm.edu	hg19	15	49054594	49054594	+	Silent	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	T852T	NM_014985	138	351	0	290	218	489	0	1035
CLEC1B	51266	hgsc.bcm.edu	hg19	12	10149825	10149825	+	Silent	SNP	G	G	A			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	L73L	NM_016509	181	422	0	394	264	593	1	1713
CLEC1B	51266	hgsc.bcm.edu	hg19	12	10149825	10149825	+	Silent	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	L73L	NM_016509	160	406	0	394	200	478	1	1713
COL6A3	1293	hgsc.bcm.edu	hg19	2	238296457	238296457	+	Silent	SNP	G	G	A			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	D360D	NM_004369	6	22	0	41	114	465	0	594
CREB5	9586	hgsc.bcm.edu	hg19	7	28758447	28758447	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G181E	NM_182898	32	212	0	192	63	397	0	1012
CREBBP	1387	hgsc.bcm.edu	hg19	16	3788617	3788617	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	R1446H	NM_004380	18	276	0	238	49	524	0	1024
CREBBP	1387	hgsc.bcm.edu	hg19	16	3788632	3788632	+	Missense_Mutation	SNP	C	C	G			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	R1441P	NM_004380	12	247	0	232	16	495	5	1011
CYP4F11	57834	hgsc.bcm.edu	hg19	19	16038256	16038256	+	Silent	SNP	G	G	A			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	F127F	NM_021187	15	35	0	42	221	561	0	566
CYP4F11	57834	hgsc.bcm.edu	hg19	19	16038256	16038256	+	Silent	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	F127F	NM_021187	31	57	0	42	204	489	0	566
DNAH11	8701	hgsc.bcm.edu	hg19	7	21813517	21813517	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	S3086L	NM_003777	63	348	1	307	92	579	0	1035
DNAH5	1767	hgsc.bcm.edu	hg19	5	13794162	13794162	+	Silent	SNP	C	C	T			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	T2631T	NM_001369	140	316	0	264	306	706	0	1149
DNAH5	1767	hgsc.bcm.edu	hg19	5	13794162	13794162	+	Silent	SNP	C	C	T			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	T2631T	NM_001369	109	302	0	264	223	521	0	1149
DNAH5	1767	hgsc.bcm.edu	hg19	5	13814813	13814813	+	Silent	SNP	G	G	A			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	F2377F	NM_001369	21	86	0	67	134	529	0	798
DSG2	1829	hgsc.bcm.edu	hg19	18	29126346	29126346	+	Silent	SNP	G	G	A			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	S999S	NM_001943	36	78	0	127	191	470	1	1130
DSG2	1829	hgsc.bcm.edu	hg19	18	29126346	29126346	+	Silent	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	S999S	NM_001943	48	122	0	127	212	506	1	1130
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	102984402	102984402	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	A111V	NM_001080463	39	307	0	322	73	528	0	744
FAM19A4	151647	hgsc.bcm.edu	hg19	3	68802095	68802095	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	E69K	NM_182522	14	38	0	64	174	407	0	1264
FAM19A4	151647	hgsc.bcm.edu	hg19	3	68802095	68802095	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	E69K	NM_182522	21	61	0	64	147	378	0	1264
FAT3	120114	hgsc.bcm.edu	hg19	11	92568208	92568208	+	Silent	SNP	G	G	A			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	A3348A	NM_001008781	18	40	0	26	220	525	0	1174
FAT3	120114	hgsc.bcm.edu	hg19	11	92568208	92568208	+	Silent	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	A3348A	NM_001008781	24	40	0	26	172	419	0	1174
FSHR	2492	hgsc.bcm.edu	hg19	2	49190190	49190190	+	Silent	SNP	G	G	A			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	F564F	NM_181446	25	66	0	114	206	464	0	1342
FSHR	2492	hgsc.bcm.edu	hg19	2	49190190	49190190	+	Silent	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	F564F	NM_181446	25	81	0	114	217	451	0	1342
GLRA2	2742	hgsc.bcm.edu	hg19	X	14708922	14708922	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	V341I	NM_002063	20	272	1	253	55	478	0	1229
GRIN2A	2903	hgsc.bcm.edu	hg19	16	9934661	9934661	+	Intron	SNP	G	G	A			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	V500_E7splice_region	NM_000833	16	40	0	29	115	278	1	1128
GRIN2A	2903	hgsc.bcm.edu	hg19	16	9934661	9934661	+	Intron	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	V500_E7splice_region	NM_000833	12	32	0	29	118	270	1	1128
HMCN1	83872	hgsc.bcm.edu	hg19	1	185956650	185956650	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	P1008S	NM_031935	52	211	0	243	98	532	0	685
HUWE1	10075	hgsc.bcm.edu	hg19	X	53619497	53619497	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	C1278Y	NM_031407	20	350	1	285	20	472	0	704
ITGB8	3696	hgsc.bcm.edu	hg19	7	20434536	20434536	+	Missense_Mutation	SNP	G	G	T			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	L358F	NM_002214	106	328	1	369	125	408	0	625
KIAA1598	57698	hgsc.bcm.edu	hg19	10	118728159	118728159	+	Intron	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	I58_E3splice_region	NM_001127211	23	498	0	457	30	479	0	1619
KRT37	8688	hgsc.bcm.edu	hg19	17	39578646	39578646	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	R258Q	NM_003770	17	108	0	128	61	472	0	990
KRT76	51350	hgsc.bcm.edu	hg19	12	53164870	53164870	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	R466H	NM_015848	15	119	0	98	65	410	0	661
L1CAM	3897	hgsc.bcm.edu	hg19	X	153129817	153129817	+	Silent	SNP	C	C	T			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	R1094R	NM_000425	19	39	0	105	170	405	0	602
LMO7	4008	hgsc.bcm.edu	hg19	13	76407282	76407282	+	Silent	SNP	C	C	T			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	F733F	NM_005358	113	447	0	387	115	479	0	1294
ANP32AP1	723972	hgsc.bcm.edu	hg19	15	35530160	35530160	+	RNA	SNP	G	G	A			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	E1_exon	NR_003144	54	140	0	167	205	470	3	1932
ANP32AP1	723972	hgsc.bcm.edu	hg19	15	35530160	35530160	+	RNA	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	E1_exon	NR_003144	83	220	0	167	191	416	3	1932
LPPR1	54886	hgsc.bcm.edu	hg19	9	104032175	104032175	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	A26V	NM_207299	47	146	0	208	115	490	3	1188
LRP2	4036	hgsc.bcm.edu	hg19	2	170097782	170097782	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	P1254L	NM_004525	21	103	0	95	99	432	1	870
LRP2	4036	hgsc.bcm.edu	hg19	2	170147449	170147449	+	Silent	SNP	C	C	T			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	S276S	NM_004525	56	381	0	297	63	589	1	1333
LRP2BP	55805	hgsc.bcm.edu	hg19	4	186288306	186288306	+	3'UTR	SNP	G	G	C			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	E8_UTR_3	NM_018409	77	242	0	218	227	534	0	1258
LRP2BP	55805	hgsc.bcm.edu	hg19	4	186288306	186288306	+	3'UTR	SNP	G	G	C			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	E8_UTR_3	NM_018409	84	192	0	218	227	488	0	1258
LRRC42	115353	hgsc.bcm.edu	hg19	1	54426138	54426138	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	D239N	NM_052940	51	255	0	201	154	601	1	705
MAP3K15	389840	hgsc.bcm.edu	hg19	X	19390844	19390844	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	R1012H	NM_001001671	4	50	0	57	54	453	0	620
MARCO	8685	hgsc.bcm.edu	hg19	2	119750788	119750788	+	Silent	SNP	C	C	T			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	C447C	NM_006770	8	98	0	155	22	434	1	661
MFGE8	4240	hgsc.bcm.edu	hg19	15	89449103	89449103	+	Silent	SNP	C	C	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	A190A	NM_005928	10	108	0	96	33	473	0	913
MYBL2	4605	hgsc.bcm.edu	hg19	20	42331498	42331498	+	Silent	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	T440T	NM_002466	22	123	0	120	73	436	1	812
MYH1	4619	hgsc.bcm.edu	hg19	17	10411257	10411257	+	Silent	SNP	C	C	T			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	K638K	NM_005963	25	58	0	49	234	485	0	350
MYH1	4619	hgsc.bcm.edu	hg19	17	10411257	10411257	+	Silent	SNP	C	C	T			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	K638K	NM_005963	19	48	0	49	202	432	0	350
NEGR1	257194	hgsc.bcm.edu	hg19	1	72076787	72076787	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	P237L	NM_173808	14	58	0	72	133	505	1	848
NLRP5	126206	hgsc.bcm.edu	hg19	19	56539225	56539225	+	Silent	SNP	G	G	A			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	R542R	NM_153447	12	38	0	30	187	462	0	612
NLRP5	126206	hgsc.bcm.edu	hg19	19	56539225	56539225	+	Silent	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	R542R	NM_153447	23	49	0	30	193	455	0	612
OLFM1	10439	hgsc.bcm.edu	hg19	9	137989681	137989681	+	3'UTR	SNP	C	C	T			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	E4_UTR_3	NM_006334	24	183	0	177	94	572	0	67
OR10Q1	219960	hgsc.bcm.edu	hg19	11	57995413	57995413	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	R312H	NM_001004471	7	66	0	73	72	479	5	1124
OR4K13	390433	hgsc.bcm.edu	hg19	14	20502160	20502160	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	P253L	NM_001004714	18	170	0	191	58	551	0	1044
PAPPA2	60676	hgsc.bcm.edu	hg19	1	176679217	176679217	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G1186R	NM_020318	57	159	0	196	211	522	0	1466
PAPPA2	60676	hgsc.bcm.edu	hg19	1	176679217	176679217	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G1186R	NM_020318	86	204	0	196	226	492	0	1466
PAX5	5079	hgsc.bcm.edu	hg19	9	37015076	37015076	+	Missense_Mutation	SNP	A	A	T			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	A	A	A	T	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	F110I	NM_016734	70	100	0	149	235	365	0	916
PAX5	5079	hgsc.bcm.edu	hg19	9	37015076	37015076	+	Missense_Mutation	SNP	A	A	T			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	A	A	A	T	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	F110I	NM_016734	56	189	0	149	138	453	0	916
PCDH15	65217	hgsc.bcm.edu	hg19	10	56077083	56077083	+	Missense_Mutation	SNP	C	C	G			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	R280P	NM_001142771	11	158	0	148	21	450	0	1013
PROZ	8858	hgsc.bcm.edu	hg19	13	113819403	113819403	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	R181H	NM_003891	7	89	0	97	32	474	0	192
PTPN11	5781	hgsc.bcm.edu	hg19	12	112888156	112888156	+	Missense_Mutation	SNP	A	A	T			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	A	A	A	T	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	N58Y	NM_002834	29	230	0	222	80	491	0	1057
PTPN3	5774	hgsc.bcm.edu	hg19	9	112189277	112189277	+	Silent	SNP	C	C	T			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	K318K	NM_002829	66	170	0	223	243	578	0	965
PTPN3	5774	hgsc.bcm.edu	hg19	9	112189277	112189277	+	Silent	SNP	C	C	T			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	K318K	NM_002829	86	224	0	223	217	501	0	965
RMND1	55005	hgsc.bcm.edu	hg19	6	151766680	151766680	+	Missense_Mutation	SNP	T	T	G			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	Q89H	NM_017909	51	373	0	287	67	519	0	796
RRAGD	58528	hgsc.bcm.edu	hg19	6	90087444	90087444	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	Y283C	NM_021244	23	369	0	381	32	503	0	1566
SEMA3D	223117	hgsc.bcm.edu	hg19	7	84710871	84710871	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	R113W	NM_152754	22	650	0	581	14	606	0	991
SGTB	54557	hgsc.bcm.edu	hg19	5	64967801	64967801	+	Silent	SNP	G	G	A			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	A248A	NM_019072	28	84	0	144	260	588	1	968
SGTB	54557	hgsc.bcm.edu	hg19	5	64967801	64967801	+	Silent	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	A248A	NM_019072	50	118	0	144	226	540	1	968
SLC23A3	151295	hgsc.bcm.edu	hg19	2	220032917	220032917	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	R256Q	NM_144712	9	61	0	43	52	440	1	500
SLCO1B3	28234	hgsc.bcm.edu	hg19	12	21030819	21030819	+	Missense_Mutation	SNP	T	T	G			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	Y362D	NM_019844	24	431	1	413	20	446	0	1279
SLFN5	162394	hgsc.bcm.edu	hg19	17	33592576	33592576	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	R782Q	NM_144975	93	398	0	348	145	594	0	658
SNX1	6642	hgsc.bcm.edu	hg19	15	64410999	64410999	+	Missense_Mutation	SNP	G	G	C			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	E138Q	NM_003099	69	534	0	498	97	534	0	1019
SOX6	55553	hgsc.bcm.edu	hg19	11	16007808	16007808	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	E689K	NM_033326	43	351	0	307	81	490	0	654
SPAG8	26206	hgsc.bcm.edu	hg19	9	35811921	35811921	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	R41K	NM_172312	7	23	0	22	65	423	0	626
SPANXN2	494119	hgsc.bcm.edu	hg19	X	142795428	142795428	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	E84K	NM_001009615	311	644	0	669	210	486	0	2345
SPAST	6683	hgsc.bcm.edu	hg19	2	32353490	32353490	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	A396V	NM_014946	56	390	0	341	75	521	0	1558
TMEM132D	121256	hgsc.bcm.edu	hg19	12	129822329	129822329	+	Silent	SNP	G	G	A			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	I383I	NM_133448	4	6	0	25	369	442	1	1038
TMEM132D	121256	hgsc.bcm.edu	hg19	12	129822329	129822329	+	Silent	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	I383I	NM_133448	18	20	0	25	331	384	1	1038
TMEM215	401498	hgsc.bcm.edu	hg19	9	32784412	32784412	+	Silent	SNP	C	C	T			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	V77V	NM_212558	11	18	0	29	196	461	0	902
TRIM66	9866	hgsc.bcm.edu	hg19	11	8661912	8661912	+	Silent	SNP	G	G	A			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	L525L	NM_014818	8	56	0	105	89	431	0	960
TRPM1	4308	hgsc.bcm.edu	hg19	15	31295017	31295017	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	R1274*	NM_002420	45	123	0	108	219	534	1	1363
TRPM1	4308	hgsc.bcm.edu	hg19	15	31295017	31295017	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	R1274*	NM_002420	50	131	0	108	182	487	1	1363
TUBB2B	347733	hgsc.bcm.edu	hg19	6	3226454	3226454	+	Silent	SNP	C	C	T			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	T72T	NM_178012	23	49	0	74	226	545	0	181
TUBB2B	347733	hgsc.bcm.edu	hg19	6	3226454	3226454	+	Silent	SNP	C	C	T			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	T72T	NM_178012	45	100	0	74	230	477	0	181
ULBP1	80329	hgsc.bcm.edu	hg19	6	150290473	150290473	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	W201*	NM_025218	13	71	0	69	100	506	1	525
USP6	9098	hgsc.bcm.edu	hg19	17	5033706	5033706	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	R15Q	NM_004505	17	268	0	182	15	439	0	241
ZC3H12C	85463	hgsc.bcm.edu	hg19	11	110035988	110035988	+	Silent	SNP	C	C	T			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	P726P	NM_033390	7	44	0	119	69	415	1	479
ZC3H4	23211	hgsc.bcm.edu	hg19	19	47572538	47572538	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	P737S	NM_015168	9	26	0	25	187	417	0	1042
ZC3H4	23211	hgsc.bcm.edu	hg19	19	47572538	47572538	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	P737S	NM_015168	24	49	0	25	153	383	0	1042
ZNF334	55713	hgsc.bcm.edu	hg19	20	45130093	45130093	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	E629K	NM_018102	165	376	0	336	215	517	0	688
ZNF334	55713	hgsc.bcm.edu	hg19	20	45130093	45130093	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	E629K	NM_018102	127	341	0	336	213	484	0	688
ZNF607	84775	hgsc.bcm.edu	hg19	19	38190536	38190536	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	R166C	NM_032689	15	319	0	277	36	491	0	796
ZNF670	93474	hgsc.bcm.edu	hg19	1	247201092	247201092	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G277R	NM_033213	63	405	0	323	78	537	0	827
ZNF735P	730291	hgsc.bcm.edu	hg19	7	63680563	63680563	+	Silent	SNP	G	G	A			TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-03A-01D	TARGET-10-PAPLDL-10A-01D	E378E	NM_001159524	51	123	0	104	120	274	0	335
ZNF735P	730291	hgsc.bcm.edu	hg19	7	63680563	63680563	+	Silent	SNP	G	G	A			TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPLDL-04A-01D	TARGET-10-PAPLDL-10A-01D	E378E	NM_001159524	56	160	0	104	74	218	0	335
ABCA3	21	hgsc.bcm.edu	hg19	16	2345656	2345656	+	Silent	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	N783N	NM_001089	13	77	0	118	49	372	0	290
ABCA3	21	hgsc.bcm.edu	hg19	16	2347353	2347353	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	S747L	NM_001089	19	71	0	62	80	354	1	264
ACVR1	90	hgsc.bcm.edu	hg19	2	158594123	158594123	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	A484T	NM_001105	74	716	2	953	32	398	3	1839
ADAM32	203102	hgsc.bcm.edu	hg19	8	39022331	39022331	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	E215K	NM_145004	23	731	0	901	23	443	0	1329
ADAM9	8754	hgsc.bcm.edu	hg19	8	38883386	38883386	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	A327T	NM_003816	57	688	0	893	43	405	1	1892
ADAMTS6	11174	hgsc.bcm.edu	hg19	5	64569234	64569234	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R518H	NM_197941	38	270	0	411	56	395	0	651
ATAD2	29028	hgsc.bcm.edu	hg19	8	124335209	124335209	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R1367H	NM_014109	83	824	4	737	78	626	1	644
ATP11B	23200	hgsc.bcm.edu	hg19	3	182586904	182586904	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R576H	NM_014616	45	484	0	676	50	455	0	844
ATP8A2	51761	hgsc.bcm.edu	hg19	13	26104152	26104152	+	Silent	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	S79S	NM_016529	17	455	1	623	17	406	2	1511
ATP8A2	51761	hgsc.bcm.edu	hg19	13	26411309	26411309	+	Silent	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	T921T	NM_016529	8	158	0	219	16	331	2	1014
B3GNT7	93010	hgsc.bcm.edu	hg19	2	232262639	232262639	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	A70V	NM_145236	5	43	0	36	44	353	2	356
B3GNT7	93010	hgsc.bcm.edu	hg19	2	232263455	232263455	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	T342M	NM_145236	4	28	0	13	73	313	2	311
BAI3	577	hgsc.bcm.edu	hg19	6	70034837	70034837	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	A963V	NM_001704	299	818	1	957	210	624	0	1048
BAI3	577	hgsc.bcm.edu	hg19	6	70034837	70034837	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	A963V	NM_001704	274	650	1	957	154	333	0	1048
METTL25	84190	hgsc.bcm.edu	hg19	12	82832522	82832522	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R477H	NM_032230	14	502	0	806	15	389	3	1777
GCFC2	6936	hgsc.bcm.edu	hg19	2	75921498	75921498	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	V297I	NM_003203	43	990	1	1339	19	383	1	1107
CACNA1D	776	hgsc.bcm.edu	hg19	3	53707101	53707101	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	V390I	NM_001128839	144	1081	1	1392	59	392	0	1052
CACNA1D	776	hgsc.bcm.edu	hg19	3	53779647	53779647	+	Intron	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	H1023_E25splice_region	NM_000720	14	133	0	150	39	375	1	504
CAPN6	827	hgsc.bcm.edu	hg19	X	110494883	110494883	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R263C	NM_014289	147	170	0	186	160	190	1	922
CC2D1A	54862	hgsc.bcm.edu	hg19	19	14023401	14023401	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	A125T	NM_017721	10	132	1	163	25	406	0	808
CC2D1A	54862	hgsc.bcm.edu	hg19	19	14031706	14031706	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R538C	NM_017721	9	73	0	94	53	389	1	794
PRIMPOL	201973	hgsc.bcm.edu	hg19	4	185580540	185580540	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R76H	NM_152683	86	864	2	1050	48	476	2	850
CELSR2	1952	hgsc.bcm.edu	hg19	1	109793125	109793125	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R142W	NM_001408	13	55	0	63	42	324	2	261
CELSR2	1952	hgsc.bcm.edu	hg19	1	109793381	109793381	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R227H	NM_001408	21	195	0	257	50	311	0	269
CELSR2	1952	hgsc.bcm.edu	hg19	1	109794032	109794032	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R444Q	NM_001408	5	50	0	81	37	322	0	280
CELSR2	1952	hgsc.bcm.edu	hg19	1	109806337	109806337	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R1647C	NM_001408	7	58	0	70	32	275	1	598
CNTRL	11064	hgsc.bcm.edu	hg19	9	123911032	123911032	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R1181H	NM_007018	13	153	1	207	46	366	0	2000
CLDN16	10686	hgsc.bcm.edu	hg19	3	190122602	190122602	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	G160E	NM_006580	16	663	0	857	16	605	0	813
COL4A5	1287	hgsc.bcm.edu	hg19	X	107829922	107829922	+	Silent	SNP	A	A	G			TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	K370K	NM_000495	7	239	0	156	140	1548	22	2248
COL4A5	1287	hgsc.bcm.edu	hg19	X	107829922	107829922	+	Silent	SNP	A	A	G			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	K370K	NM_000495	123	140	0	156	1751	2036	22	2248
COL6A3	1293	hgsc.bcm.edu	hg19	2	238283454	238283454	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	A1094T	NM_004369	7	68	0	67	43	312	0	851
COL6A3	1293	hgsc.bcm.edu	hg19	2	238303649	238303649	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R97H	NM_004369	25	201	0	205	42	429	2	449
CROT	54677	hgsc.bcm.edu	hg19	7	87006702	87006702	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R305H	NM_021151	15	956	0	1276	10	384	2	2033
CUBN	8029	hgsc.bcm.edu	hg19	10	16882332	16882332	+	Silent	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	P3343P	NM_001081	15	111	0	145	38	401	1	1622
CUBN	8029	hgsc.bcm.edu	hg19	10	16962055	16962055	+	Missense_Mutation	SNP	G	G	C			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	P2243R	NM_001081	10	96	0	136	29	377	0	1858
CYP2A13	1553	hgsc.bcm.edu	hg19	19	41597775	41597775	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R265W	NM_000766	10	183	1	276	22	328	0	769
DLG1	1739	hgsc.bcm.edu	hg19	3	196876653	196876653	+	Silent	SNP	T	T	G			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	P199P	NM_004087	79	563	0	715	58	441	0	1087
DLG1	1739	hgsc.bcm.edu	hg19	3	197023312	197023312	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R19H	NM_004087	16	726	1	1007	14	447	2	838
DNAH3	55567	hgsc.bcm.edu	hg19	16	20996485	20996485	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	V2527M	NM_017539	26	97	0	140	58	364	1	1202
DNAH3	55567	hgsc.bcm.edu	hg19	16	20996588	20996588	+	Silent	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	A2492A	NM_017539	26	91	0	150	110	356	2	1145
DNMT1	1786	hgsc.bcm.edu	hg19	19	10279005	10279005	+	Splice_Site	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	P252_E9splice	NM_001379	88	519	0	619	109	445	0	642
DPY19L3	147991	hgsc.bcm.edu	hg19	19	32955658	32955658	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	P528S	NM_207325	42	479	2	777	40	417	0	906
EMR1	2015	hgsc.bcm.edu	hg19	19	6908736	6908736	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	V359I	NM_001974	58	496	0	599	62	402	0	1891
ERAP2	64167	hgsc.bcm.edu	hg19	5	96244735	96244735	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	A695T	NM_022350	28	266	0	297	42	384	0	760
EXPH5	23086	hgsc.bcm.edu	hg19	11	108412490	108412490	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G57S	NM_015065	17	585	0	853	9	391	0	797
FAM129A	116496	hgsc.bcm.edu	hg19	1	184868364	184868364	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R45H	NM_052966	34	577	1	641	39	567	5	1900
FAM20A	54757	hgsc.bcm.edu	hg19	17	66551823	66551823	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R156*	NM_017565	10	69	0	115	47	317	0	863
FRA10AC1	118924	hgsc.bcm.edu	hg19	10	95441259	95441259	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	E255D	NM_145246	48	1126	0	1609	34	440	1	2351
G3BP2	9908	hgsc.bcm.edu	hg19	4	76570760	76570760	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G402S	NM_203504	46	543	0	687	37	314	2	1449
GABPB1	2553	hgsc.bcm.edu	hg19	15	50578287	50578287	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R326Q	NM_016655	19	803	0	926	7	448	1	1123
GABRG2	2566	hgsc.bcm.edu	hg19	5	161576192	161576192	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	A334V	NM_198904	28	657	0	858	18	319	0	925
GPR126	57211	hgsc.bcm.edu	hg19	6	142736219	142736219	+	Silent	SNP	A	A	G			TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	T885T	NM_020455	166	513	0	589	325	748	4	2101
GPR126	57211	hgsc.bcm.edu	hg19	6	142736219	142736219	+	Silent	SNP	A	A	G			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	T885T	NM_020455	164	368	0	589	820	1876	4	2101
GPR18	2841	hgsc.bcm.edu	hg19	13	99907479	99907479	+	Silent	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	H216H	NM_005292	16	155	0	167	48	431	3	1054
GPR18	2841	hgsc.bcm.edu	hg19	13	99907556	99907556	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R191*	NM_005292	62	433	0	483	59	399	0	1073
GRIA1	2890	hgsc.bcm.edu	hg19	5	153029985	153029985	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R186W	NM_000827	23	220	0	330	56	360	3	1612
GRIA1	2890	hgsc.bcm.edu	hg19	5	153149821	153149821	+	Nonsense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R706*	NM_000827	31	282	0	376	52	334	1	1290
HERC6	55008	hgsc.bcm.edu	hg19	4	89326044	89326044	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R370H	NM_001165136	42	373	0	510	45	381	1	1364
HERC6	55008	hgsc.bcm.edu	hg19	4	89326051	89326051	+	Silent	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	P372P	NM_001165136	16	256	0	404	9	374	4	1366
HMCN1	83872	hgsc.bcm.edu	hg19	1	186056373	186056373	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R3024Q	NM_031935	43	633	0	609	29	498	0	866
IPO9	55705	hgsc.bcm.edu	hg19	1	201822158	201822158	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R208H	NM_018085	19	693	0	670	28	595	1	822
IPO9	55705	hgsc.bcm.edu	hg19	1	201843467	201843467	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	A934T	NM_018085	12	210	0	164	22	530	1	500
ISL1	3670	hgsc.bcm.edu	hg19	5	50685698	50685698	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R233W	NM_002202	18	125	0	144	34	267	1	732
ITGB4	3691	hgsc.bcm.edu	hg19	17	73750692	73750692	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	P1382S	NM_001005619	14	51	0	92	457	1292	5	2932
ITGB4	3691	hgsc.bcm.edu	hg19	17	73750692	73750692	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	P1382S	NM_001005619	37	88	0	92	1739	3955	5	2932
KIAA1468	57614	hgsc.bcm.edu	hg19	18	59958830	59958830	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R1142Q	NM_020854	57	565	1	704	53	421	0	2216
KRAS	3845	hgsc.bcm.edu	hg19	12	25398285	25398285	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	G12S	NM_033360	36	294	1	392	96	675	2	974
LRGUK	136332	hgsc.bcm.edu	hg19	7	133824238	133824238	+	Missense_Mutation	SNP	A	A	C			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	Q152P	NM_144648	144	693	0	1036	102	432	0	1136
LRP2	4036	hgsc.bcm.edu	hg19	2	169999313	169999313	+	Intron	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	S4329_E71splice_region	NM_004525	20	161	0	220	29	341	1	606
LRP2	4036	hgsc.bcm.edu	hg19	2	170129473	170129473	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G694S	NM_004525	39	215	0	334	76	354	1	1499
MAP3K13	9175	hgsc.bcm.edu	hg19	3	185198177	185198177	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	D887N	NM_004721	28	150	0	226	33	256	0	541
MCTP2	55784	hgsc.bcm.edu	hg19	15	94882562	94882562	+	Silent	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	T227T	NM_018349	13	180	0	293	18	404	0	505
MLH1	4292	hgsc.bcm.edu	hg19	3	37056036	37056036	+	Splice_Site	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	H264_E9splice	NM_000249	37	232	0	315	63	400	1	906
KMT2B	9757	hgsc.bcm.edu	hg19	12	49446467	49446468	+	Frame_Shift_Ins	INS	-	-	G			TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	-	-	-	G	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	T380fs	NM_003482	14	79	0	126	83	504	0	2825
KMT2B	9757	hgsc.bcm.edu	hg19	12	49446467	49446468	+	Frame_Shift_Ins	INS	-	-	G			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	-	-	-	G	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	T380fs	NM_003482	55	111	0	126	144	352	0	2825
KMT2B	9757	hgsc.bcm.edu	hg19	12	49448093	49448094	+	Frame_Shift_Del	DEL	TG	TG	-			TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	TG	TG	TG	-	TG	TG	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	S169fs	NM_003482	31	89	0	182	180	778	0	2862
KMT2B	9757	hgsc.bcm.edu	hg19	12	49448093	49448094	+	Frame_Shift_Del	DEL	TG	TG	-			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	TG	TG	TG	-	TG	TG	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	S169fs	NM_003482	60	140	0	182	145	520	0	2862
MMP13	4322	hgsc.bcm.edu	hg19	11	102822769	102822769	+	Silent	SNP	G	G	A			TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	D257D	NM_002427	87	276	0	405	517	1414	2	1966
MMP13	4322	hgsc.bcm.edu	hg19	11	102822769	102822769	+	Silent	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	D257D	NM_002427	136	302	0	405	899	1935	2	1966
MSH6	2956	hgsc.bcm.edu	hg19	2	48026566	48026566	+	Nonsense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R482*	NM_000179	42	124	1	242	82	229	0	1737
MSH6	2956	hgsc.bcm.edu	hg19	2	48028049	48028049	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R976H	NM_000179	10	45	0	99	35	240	4	1993
MSH6	2956	hgsc.bcm.edu	hg19	2	48028136	48028136	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R1005Q	NM_000179	9	113	0	250	23	235	1	2156
MTHFD1	4522	hgsc.bcm.edu	hg19	14	64905892	64905892	+	Splice_Site	SNP	T	T	C			TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	A559_E17splice	NM_005956	25	194	2	224	96	575	3	916
MTHFD1	4522	hgsc.bcm.edu	hg19	14	64905892	64905892	+	Splice_Site	SNP	T	T	C			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	A559_E17splice	NM_005956	53	164	2	224	142	379	3	916
MUC16	94025	hgsc.bcm.edu	hg19	19	9070332	9070332	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	A5705V	NM_024690	54	573	0	726	35	417	4	1573
MYO9A	4649	hgsc.bcm.edu	hg19	15	72180447	72180447	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R1718Q	NM_006901	14	374	0	489	12	423	0	903
MYO9A	4649	hgsc.bcm.edu	hg19	15	72252430	72252430	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R665Q	NM_006901	24	257	0	339	49	414	2	1038
NAA16	79612	hgsc.bcm.edu	hg19	13	41893023	41893023	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R74H	NM_024561	19	459	0	703	15	412	1	1386
NBPF9	400818	hgsc.bcm.edu	hg19	1	144828676	144828676	+	Missense_Mutation	SNP	T	T	G			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	F907L	NM_001037675	48	711	0	681	56	759	0	1846
NCAM2	4685	hgsc.bcm.edu	hg19	21	22849745	22849745	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	P677L	NM_004540	11	207	0	283	12	358	2	857
NOD1	10392	hgsc.bcm.edu	hg19	7	30491183	30491183	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R617H	NM_006092	6	33	0	40	64	331	1	420
NOD1	10392	hgsc.bcm.edu	hg19	7	30496458	30496458	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R27Q	NM_006092	81	362	0	459	87	361	1	578
NOL10	79954	hgsc.bcm.edu	hg19	2	10742925	10742925	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R437C	NM_024894	50	898	0	1057	37	400	0	1038
NRAS	4893	hgsc.bcm.edu	hg19	1	115258744	115258744	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	G13D	NM_002524	75	365	1	603	136	623	0	1399
NRAS	4893	hgsc.bcm.edu	hg19	1	115258744	115258744	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G13D	NM_002524	174	435	1	603	141	327	0	1399
OBSCN	84033	hgsc.bcm.edu	hg19	1	228430957	228430957	+	Silent	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	T1001T	NM_001098623	4	37	0	54	20	322	1	794
OBSCN	84033	hgsc.bcm.edu	hg19	1	228479804	228479804	+	Silent	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	A3515A	NM_001098623	11	126	0	105	46	476	1	926
OBSCN	84033	hgsc.bcm.edu	hg19	1	228495832	228495832	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R4163W	NM_001098623	13	206	0	177	44	505	3	736
OGN	4969	hgsc.bcm.edu	hg19	9	95148500	95148500	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R237C	NM_033014	65	485	0	641	62	397	2	1232
OR2L1P	26247	hgsc.bcm.edu	hg19	1	248154046	248154046	+	RNA	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	E1_exon	NR_002145	9	94	0	94	24	500	0	1422
OR2L1P	26247	hgsc.bcm.edu	hg19	1	248154363	248154363	+	RNA	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	E1_exon	NR_002145	12	84	0	75	51	475	1	1104
PCDH17	27253	hgsc.bcm.edu	hg19	13	58206758	58206758	+	Silent	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	P26P	NM_001040429	5	42	0	92	24	270	0	409
PCDH17	27253	hgsc.bcm.edu	hg19	13	58298857	58298857	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R970H	NM_001040429	33	177	3	236	80	340	7	622
PCDHA12	56137	hgsc.bcm.edu	hg19	5	140256309	140256309	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	V418M	NM_018903	6	57	0	75	28	286	0	301
PCDHA3	56145	hgsc.bcm.edu	hg19	5	140182686	140182686	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R635H	NM_018906	6	27	0	38	6	57	0	56
PCDHB12	56124	hgsc.bcm.edu	hg19	5	140589746	140589746	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	V423I	NM_018932	12	144	0	188	20	178	0	294
PCDHGA5	56110	hgsc.bcm.edu	hg19	5	140744156	140744156	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	A87T	NM_018918	12	58	0	68	5	83	0	76
PCDHGB5	56101	hgsc.bcm.edu	hg19	5	140778270	140778270	+	Silent	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	P192P	NM_018925	4	34	0	46	37	385	0	672
PCDHGB5	56101	hgsc.bcm.edu	hg19	5	140780072	140780072	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	S793L	NM_018925	81	822	2	1148	36	395	0	594
PEG3	5178	hgsc.bcm.edu	hg19	19	57328030	57328030	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R594C	NM_006210	16	195	0	231	39	418	0	1364
PEG3	5178	hgsc.bcm.edu	hg19	19	57329166	57329166	+	Silent	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	T270T	NM_006210	17	215	0	236	24	361	2	996
PHLPP1	23239	hgsc.bcm.edu	hg19	18	60582150	60582150	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R905C	NM_194449	62	579	2	702	45	437	0	899
PLEKHG3	26030	hgsc.bcm.edu	hg19	14	65207925	65207925	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	V508M	NM_015549	20	83	1	158	88	494	0	242
PPP3CC	5533	hgsc.bcm.edu	hg19	8	22389813	22389814	+	Frame_Shift_Ins	INS	-	-	GGTCGGAC			TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	-	-	-	GGTCGGAC	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	I406fs	NM_005605	86	454	0	590	169	614	0	798
PPP3CC	5533	hgsc.bcm.edu	hg19	8	22389813	22389814	+	Frame_Shift_Ins	INS	-	-	GGTCGGAC			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	-	-	-	GGTCGGAC	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	I406fs	NM_005605	69	295	0	590	152	417	0	798
PTPRS	5802	hgsc.bcm.edu	hg19	19	5208334	5208334	+	Silent	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	S1852S	NM_002850	7	104	0	137	12	366	1	1098
PTPRS	5802	hgsc.bcm.edu	hg19	19	5244108	5244108	+	Silent	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R458R	NM_002850	5	33	0	46	25	300	0	607
RUNX1	861	hgsc.bcm.edu	hg19	21	36206892	36206892	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R207Q	NM_001754	11	137	0	149	31	298	0	790
SACS	26278	hgsc.bcm.edu	hg19	13	23909132	23909132	+	Silent	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	S2961S	NM_014363	10	105	0	129	20	374	0	634
SACS	26278	hgsc.bcm.edu	hg19	13	23911737	23911737	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R2093H	NM_014363	13	85	0	122	64	365	0	457
SCML1	6322	hgsc.bcm.edu	hg19	X	17768094	17768094	+	Silent	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	Y101Y	NM_006746	4	40	0	74	40	193	2	443
SH2D1A	4068	hgsc.bcm.edu	hg19	X	123499637	123499637	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R55Q	NM_002351	24	491	0	713	10	178	0	682
SLC16A2	6567	hgsc.bcm.edu	hg19	X	73749135	73749135	+	Silent	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	L494L	NM_006517	52	241	0	310	26	194	0	695
SLC16A2	6567	hgsc.bcm.edu	hg19	X	73749146	73749146	+	Silent	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C497C	NM_006517	34	227	0	284	15	203	2	692
SLC19A1	6573	hgsc.bcm.edu	hg19	21	46957749	46957749	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R42Q	NM_194255	6	22	0	19	49	316	0	109
SLC19A1	6573	hgsc.bcm.edu	hg19	21	46957757	46957757	+	Silent	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	A39A	NM_194255	4	15	0	22	46	310	1	106
SMARCA5	8467	hgsc.bcm.edu	hg19	4	144460000	144460000	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R560H	NM_003601	65	509	2	693	41	369	0	1182
STAB1	23166	hgsc.bcm.edu	hg19	3	52542049	52542049	+	Intron	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	E717_E20splice_region	NM_015136	7	81	1	113	34	395	0	130
STAB1	23166	hgsc.bcm.edu	hg19	3	52542330	52542330	+	Silent	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	T730T	NM_015136	18	160	0	211	34	409	0	179
STARD9	57519	hgsc.bcm.edu	hg19	15	42977291	42977291	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R1172H	NM_020759	12	74	0	81	73	375	2	544
STARD9	57519	hgsc.bcm.edu	hg19	15	42983011	42983011	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	V3079M	NM_020759	8	71	0	125	40	404	3	672
SYNE1	23345	hgsc.bcm.edu	hg19	6	152443750	152443750	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G8691S	NM_033071	8	77	0	91	41	301	0	877
SYNE1	23345	hgsc.bcm.edu	hg19	6	152631934	152631934	+	Silent	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	S5524S	NM_033071	12	313	0	464	9	346	0	793
TBC1D22A	25771	hgsc.bcm.edu	hg19	22	47308019	47308019	+	Missense_Mutation	SNP	G	G	T			TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	G317V	NM_014346	62	629	1	614	85	659	3	1814
TBC1D8	11138	hgsc.bcm.edu	hg19	2	101638759	101638759	+	Silent	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	A900A	NM_001102426	9	140	0	186	14	378	0	711
TBC1D8	11138	hgsc.bcm.edu	hg19	2	101675938	101675938	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	L101S	NM_001102426	16	564	0	765	14	379	0	953
TMEM131	23505	hgsc.bcm.edu	hg19	2	98419156	98419156	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R834W	NM_015348	27	774	0	1053	11	414	1	749
TMEM154	201799	hgsc.bcm.edu	hg19	4	153573938	153573938	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	P69L	NM_152680	57	468	0	614	57	386	0	949
TPI1P2	286016	hgsc.bcm.edu	hg19	7	128696212	128696212	+	RNA	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	E1_exon	Unknown	5	30	0	40	23	147	0	270
TTC18	118491	hgsc.bcm.edu	hg19	10	75095218	75095218	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R286H	NM_145170	45	421	0	549	40	407	3	954
TTC18	118491	hgsc.bcm.edu	hg19	10	75114512	75114512	+	Missense_Mutation	SNP	C	C	G			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	V15L	NM_145170	16	299	1	314	33	425	0	1240
TTLL4	9654	hgsc.bcm.edu	hg19	2	219617568	219617568	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R1020H	NM_014640	21	861	0	1016	16	407	1	1079
TTN	7273	hgsc.bcm.edu	hg19	2	179419407	179419407	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R26988Q	NM_133378	10	172	1	167	10	362	1	707
TTN	7273	hgsc.bcm.edu	hg19	2	179429213	179429213	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R24648C	NM_133378	16	292	0	385	21	365	1	787
TTN	7273	hgsc.bcm.edu	hg19	2	179456110	179456110	+	Silent	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	T17546T	NM_133378	10	150	0	214	10	359	0	516
TTN	7273	hgsc.bcm.edu	hg19	2	179463495	179463495	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	A16413V	NM_133378	12	103	0	144	8	322	4	803
TTN	7273	hgsc.bcm.edu	hg19	2	179576050	179576050	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R8061*	NM_133378	19	172	0	193	26	380	0	882
TTN	7273	hgsc.bcm.edu	hg19	2	179579894	179579894	+	Silent	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	H7429H	NM_133378	23	313	1	518	30	308	3	886
TTN	7273	hgsc.bcm.edu	hg19	2	179631323	179631323	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R3163H	NM_133379	20	218	0	292	41	382	0	851
UBA2	10054	hgsc.bcm.edu	hg19	19	34941175	34941176	+	Frame_Shift_Ins	INS	-	-	GGAG			TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	-	-	-	GGAG	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	F259fs	NM_005499	85	503	0	730	162	595	0	1263
UBA2	10054	hgsc.bcm.edu	hg19	19	34941175	34941176	+	Frame_Shift_Ins	INS	-	-	GGAG			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	-	-	-	GGAG	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	F259fs	NM_005499	85	503	0	730	134	386	0	1263
UBE2G2	7327	hgsc.bcm.edu	hg19	21	46191356	46191356	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R145H	NM_003343	10	159	0	207	13	423	0	954
UBE2G2	7327	hgsc.bcm.edu	hg19	21	46197263	46197263	+	Silent	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	P65P	NM_003343	29	203	0	309	63	408	1	480
USP11	8237	hgsc.bcm.edu	hg19	X	47102956	47102956	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R625H	NM_004651	13	72	0	98	48	192	0	639
VCP	7415	hgsc.bcm.edu	hg19	9	35064288	35064289	+	Intron	INS	-	-	CC			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	-	-	-	CC	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	E192_E6splice_region	NM_007126	65	135	0	194	154	400	0	732
WHSC1L1	54904	hgsc.bcm.edu	hg19	8	38157027	38157027	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R898H	NM_023034	62	348	3	498	106	424	0	1180
ZAN	7455	hgsc.bcm.edu	hg19	7	100391555	100391555	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R2634H	NM_003386	6	57	0	49	53	366	4	997
ZBTB20	26137	hgsc.bcm.edu	hg19	3	114069569	114069569	+	Silent	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	S379S	NM_001164343	5	46	0	79	28	344	0	866
ZBTB20	26137	hgsc.bcm.edu	hg19	3	114099662	114099662	+	5'UTR	SNP	G	G	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	UTR_5	NM_001164343	26	205	0	237	32	357	3	1689
ZBTB41	360023	hgsc.bcm.edu	hg19	1	197144168	197144168	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	V653I	NM_194314	70	892	1	870	36	587	1	1334
ZFR2	23217	hgsc.bcm.edu	hg19	19	3816755	3816755	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	V674L	NM_015174	145	377	0	38	250	708	1	1973
ZFR2	23217	hgsc.bcm.edu	hg19	19	3816755	3816755	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	V674L	NM_015174	1489	3558	0	38	1648	3291	1	1973
ZNF22	7570	hgsc.bcm.edu	hg19	10	45499488	45499489	+	Frame_Shift_Ins	INS	-	-	CC			TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	-	-	-	CC	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-03A-01D	TARGET-10-PAPNNX-10A-01D	R224fs	NM_006963	48	109	0	126	200	628	0	749
ZNF22	7570	hgsc.bcm.edu	hg19	10	45499488	45499489	+	Frame_Shift_Ins	INS	-	-	CC			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	-	-	-	CC	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	R224fs	NM_006963	38	72	0	126	149	387	0	749
ZNF287	57336	hgsc.bcm.edu	hg19	17	16455248	16455248	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPNNX-04A-01D	TARGET-10-PAPNNX-10A-01D	I736M	NM_020653	53	508	0	706	40	432	0	1128
BAI3	577	hgsc.bcm.edu	hg19	6	69349200	69349200	+	Silent	SNP	G	G	A			TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	S211S	NM_001704	5	19	0	26	214	466	1	779
BAI3	577	hgsc.bcm.edu	hg19	6	69349200	69349200	+	Silent	SNP	G	G	A			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	S211S	NM_001704	6	25	0	26	102	443	1	779
OTOGL	283310	hgsc.bcm.edu	hg19	12	80730253	80730253	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	L1545S	NM_173591	20	268	1	418	28	583	0	969
ADGB	79747	hgsc.bcm.edu	hg19	6	146920236	146920236	+	Silent	SNP	G	G	T			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	S20S	NM_024694	10	72	0	54	94	487	0	1062
CPXCR1	53336	hgsc.bcm.edu	hg19	X	88009243	88009243	+	Frame_Shift_Del	DEL	C	C	-			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	C	C	C	-	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	Y276fs	NM_033048	26	80	0	165	130	460	0	683
CRLF2	64109	hgsc.bcm.edu	hg19	X	1314966	1314966	+	Missense_Mutation	SNP	A	A	C			TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	F232C	NM_022148	393	915	0	837	245	510	0	698
CRLF2	64109	hgsc.bcm.edu	hg19	X	1314966	1314966	+	Missense_Mutation	SNP	A	A	C			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	F232C	NM_022148	221	804	0	837	157	574	0	698
DCK	1633	hgsc.bcm.edu	hg19	4	71859603	71859603	+	Silent	SNP	G	G	A			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	E17E	NM_000788	5	22	0	30	40	547	2	793
DMBT1	1755	hgsc.bcm.edu	hg19	10	124361492	124361492	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	A676T	NM_004406	27	52	0	47	87	197	0	241
DMBT1	1755	hgsc.bcm.edu	hg19	10	124361492	124361492	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	A676T	NM_004406	7	36	0	47	63	240	0	241
DSC2	1824	hgsc.bcm.edu	hg19	18	28648095	28648095	+	Silent	SNP	C	C	T			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	S864S	NM_024422	10	133	0	186	35	560	1	996
DSTYK	25778	hgsc.bcm.edu	hg19	1	205132997	205132997	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	R471*	NM_015375	47	373	0	371	120	667	1	720
ERCC8	1161	hgsc.bcm.edu	hg19	5	60186753	60186753	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	K335R	NM_000082	13	375	0	643	59	696	0	1029
ETV1	2115	hgsc.bcm.edu	hg19	7	14028631	14028631	+	Splice_Site	SNP	A	A	G			TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	N15_E3splice	NM_004956	12	377	0	292	15	490	0	788
ETV1	2115	hgsc.bcm.edu	hg19	7	14028631	14028631	+	Splice_Site	SNP	A	A	G			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	N15_E3splice	NM_004956	71	253	0	292	120	522	0	788
GABRR1	2569	hgsc.bcm.edu	hg19	6	89891765	89891765	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	R270C	NM_002042	83	209	0	192	153	532	1	1375
GFI1	2672	hgsc.bcm.edu	hg19	1	92941577	92941577	+	3'UTR	SNP	C	C	T			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	E7_UTR_3	NM_005263	5	33	0	41	30	568	0	505
GLI3	2737	hgsc.bcm.edu	hg19	7	42011956	42011956	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	V695I	NM_000168	20	132	0	102	60	543	2	521
GPR110	266977	hgsc.bcm.edu	hg19	6	46977720	46977720	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	S484L	NM_153840	10	117	1	187	49	572	0	1090
ARHGAP35	2909	hgsc.bcm.edu	hg19	19	47424520	47424520	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	R863H	NM_004491	21	333	0	422	56	664	0	827
HEMK1	51409	hgsc.bcm.edu	hg19	3	50615257	50615257	+	Splice_Site	SNP	G	G	A			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	L206_E7splice	NM_016173	25	111	0	102	116	637	0	462
KIAA1244	57221	hgsc.bcm.edu	hg19	6	138655785	138655785	+	Silent	SNP	C	C	T			TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	G1934G	NM_020340	15	28	0	17	202	439	0	706
KIAA1244	57221	hgsc.bcm.edu	hg19	6	138655785	138655785	+	Silent	SNP	C	C	T			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	G1934G	NM_020340	10	23	0	17	169	550	0	706
MBOAT1	154141	hgsc.bcm.edu	hg19	6	20113206	20113206	+	Silent	SNP	C	C	G			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	T370T	NM_001080480	8	99	0	92	24	606	0	664
MDN1	23195	hgsc.bcm.edu	hg19	6	90421896	90421896	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	E2504K	NM_014611	18	291	0	311	15	538	7	2139
MUC16	94025	hgsc.bcm.edu	hg19	19	9089322	9089322	+	Silent	SNP	C	C	T			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	S831S	NM_024690	53	163	0	243	151	581	3	1935
MUC17	140453	hgsc.bcm.edu	hg19	7	100682921	100682921	+	Nonsense_Mutation	SNP	C	C	T			TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	R2742*	NM_001040105	58	153	0	153	156	376	0	310
MUC17	140453	hgsc.bcm.edu	hg19	7	100682921	100682921	+	Nonsense_Mutation	SNP	C	C	T			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	R2742*	NM_001040105	15	108	0	153	104	467	0	310
NRAS	4893	hgsc.bcm.edu	hg19	1	115258745	115258745	+	Missense_Mutation	SNP	C	C	G			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	G13R	NM_002524	76	337	0	326	157	639	0	1256
NT5C2	22978	hgsc.bcm.edu	hg19	10	104857107	104857107	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	R238W	NM_012229	22	270	2	404	80	801	0	790
OVCH1	341350	hgsc.bcm.edu	hg19	12	29626044	29626044	+	Intron	SNP	A	A	T			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	A	A	A	T	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	S533_E15splice_region	NM_183378	29	266	0	509	46	580	0	1693
PARP15	165631	hgsc.bcm.edu	hg19	3	122329532	122329532	+	Silent	SNP	T	T	C			TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	H166H	NM_001113523	57	126	0	122	244	522	0	1140
PARP15	165631	hgsc.bcm.edu	hg19	3	122329532	122329532	+	Silent	SNP	T	T	C			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	H166H	NM_001113523	36	137	0	122	170	615	0	1140
PCDHB4	56131	hgsc.bcm.edu	hg19	5	140502808	140502808	+	Nonsense_Mutation	SNP	C	C	T			TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	R410*	NM_018938	37	142	0	123	146	449	0	796
PCYT2	5833	hgsc.bcm.edu	hg19	17	79862805	79862805	+	Silent	SNP	C	C	T			TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	A358A	NM_002861	17	43	0	31	241	529	0	151
PCYT2	5833	hgsc.bcm.edu	hg19	17	79862805	79862805	+	Silent	SNP	C	C	T			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	A358A	NM_002861	14	51	0	31	161	580	0	151
PRKD1	5587	hgsc.bcm.edu	hg19	14	30108080	30108080	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	R243*	NM_002742	9	382	0	335	9	545	0	732
PRKD1	5587	hgsc.bcm.edu	hg19	14	30108080	30108080	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	R243*	NM_002742	74	257	0	335	136	593	0	732
PRPS1	5631	hgsc.bcm.edu	hg19	X	106888411	106888411	+	Missense_Mutation	SNP	A	A	C			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	T179P	NM_002764	16	103	0	73	71	474	0	843
PSMB5	5693	hgsc.bcm.edu	hg19	14	23496967	23496967	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	G193S	NM_001144932	19	365	0	392	37	686	1	1095
RPGR	6103	hgsc.bcm.edu	hg19	X	38169877	38169877	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	V257I	NM_000328	18	210	0	134	51	441	1	457
RSPO3	84870	hgsc.bcm.edu	hg19	6	127476472	127476472	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	R175W	NM_032784	17	235	0	270	67	591	0	955
SLC5A1	6523	hgsc.bcm.edu	hg19	22	32498115	32498115	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	T519M	NM_000343	87	786	0	586	77	666	0	2130
TTC30A	92104	hgsc.bcm.edu	hg19	2	178482826	178482826	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	R202*	NM_152275	39	88	0	77	211	459	0	601
TTC30A	92104	hgsc.bcm.edu	hg19	2	178482826	178482826	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	R202*	NM_152275	16	70	0	77	141	532	0	601
USP9X	8239	hgsc.bcm.edu	hg19	X	41000486	41000492	+	Intron	DEL	CTTGAAA	CTTGAAA	-			TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	CTTGAAA	CTTGAAA	CTTGAAA	-	CTTGAAA	CTTGAAA	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	R341_E8splice_region	NM_001039590	168	197	0	164	456	497	0	386
USP9X	8239	hgsc.bcm.edu	hg19	X	41000486	41000492	+	Intron	DEL	CTTGAAA	CTTGAAA	-			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	CTTGAAA	CTTGAAA	CTTGAAA	-	CTTGAAA	CTTGAAA	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	R341_E8splice_region	NM_001039590	47	83	0	164	254	454	0	386
VIT	5212	hgsc.bcm.edu	hg19	2	37028490	37028490	+	Nonsense_Mutation	SNP	C	C	T			TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-03A-01D	TARGET-10-PAPSPG-10A-01D	R369*	NM_053276	159	345	0	253	238	536	2	2163
VIT	5212	hgsc.bcm.edu	hg19	2	37028490	37028490	+	Nonsense_Mutation	SNP	C	C	T			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	R369*	NM_053276	33	175	0	253	154	613	2	2163
ZBTB5	9925	hgsc.bcm.edu	hg19	9	37441320	37441320	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPG-04A-01D	TARGET-10-PAPSPG-10A-01D	S410L	NM_014872	11	156	0	158	16	637	1	728
ADAM22	53616	hgsc.bcm.edu	hg19	7	87772355	87772355	+	Missense_Mutation	SNP	A	A	C			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	K412T	NM_016351	268	839	0	878	134	421	0	1690
ASPH	444	hgsc.bcm.edu	hg19	8	62596684	62596684	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	T56M	NM_004318	254	579	0	557	209	429	1	1981
ATF1	466	hgsc.bcm.edu	hg19	12	51203291	51203291	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G83R	NM_005171	218	486	0	475	202	432	1	1048
ATG2A	23130	hgsc.bcm.edu	hg19	11	64678544	64678544	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	R478C	NM_015104	32	67	0	45	145	338	0	231
ATP11A	23250	hgsc.bcm.edu	hg19	13	113481063	113481063	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	I360T	NM_032189	56	173	0	163	130	408	0	646
ATP7A	538	hgsc.bcm.edu	hg19	X	77268586	77268586	+	Nonsense_Mutation	SNP	C	C	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	R795*	NM_000052	344	373	0	343	234	248	0	826
B3GALT1	8708	hgsc.bcm.edu	hg19	2	168725433	168725433	+	5'UTR	SNP	C	C	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	E2_UTR_5	NM_020981	22	32	0	37	164	356	0	1103
BRWD3	254065	hgsc.bcm.edu	hg19	X	79945475	79945475	+	Missense_Mutation	SNP	C	C	G			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	R1240P	NM_153252	281	299	0	312	217	230	0	937
ERMARD	55780	hgsc.bcm.edu	hg19	6	170175443	170175443	+	Splice_Site	SNP	G	G	A			TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	R465_E14splice	NM_018341	72	163	0	172	311	688	0	799
MSANTD3-TMEFF1	100526694	hgsc.bcm.edu	hg19	9	103338863	103338863	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	T449M	NM_001198812	27	524	2	672	27	431	3	1384
CENPE	1062	hgsc.bcm.edu	hg19	4	104079543	104079543	+	Missense_Mutation	SNP	G	G	T			TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	L983I	NM_001813	298	762	2	897	371	745	0	1651
CENPE	1062	hgsc.bcm.edu	hg19	4	104079543	104079543	+	Missense_Mutation	SNP	G	G	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	L983I	NM_001813	307	727	2	897	227	472	0	1651
CNTNAP2	26047	hgsc.bcm.edu	hg19	7	147674951	147674951	+	Intron	SNP	C	C	A			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	R753_E15splice_region	NM_014141	109	236	0	255	197	398	0	754
CPEB2	132864	hgsc.bcm.edu	hg19	4	15018869	15018869	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	D698N	NM_182485	295	642	0	696	209	447	0	1116
CYP3A7	1551	hgsc.bcm.edu	hg19	7	99328687	99328687	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	R54C	NM_000765	108	239	0	264	201	410	0	626
DDX4	54514	hgsc.bcm.edu	hg19	5	55110749	55110749	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	R545Q	NM_001142549	77	175	0	160	240	475	0	1251
DHX34	9704	hgsc.bcm.edu	hg19	19	47885311	47885311	+	Missense_Mutation	SNP	G	G	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G1125W	NM_014681	25	65	0	42	126	382	0	608
DTX2	113878	hgsc.bcm.edu	hg19	7	76109876	76109876	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	A17V	NM_020892	14	18	0	15	139	325	1	549
ELAVL2	1993	hgsc.bcm.edu	hg19	9	23693462	23693462	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	A246T	NM_004432	291	632	0	660	307	631	0	1194
ELAVL2	1993	hgsc.bcm.edu	hg19	9	23693462	23693462	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	A246T	NM_004432	294	626	0	660	158	345	0	1194
FBL	2091	hgsc.bcm.edu	hg19	19	40331275	40331275	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	G55R	NM_001436	13	31	0	32	200	439	7	1431
FBL	2091	hgsc.bcm.edu	hg19	19	40331275	40331275	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G55R	NM_001436	11	28	0	32	137	296	7	1431
GAL3ST1	9514	hgsc.bcm.edu	hg19	22	30951702	30951702	+	Missense_Mutation	SNP	G	G	C			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	F170L	NM_004861	10	23	0	16	150	333	0	471
GIGYF2	26058	hgsc.bcm.edu	hg19	2	233681683	233681684	+	Frame_Shift_Ins	INS	-	-	GTTC			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	-	-	-	GTTC	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	R771fs	NM_015575	28	73	0	106	146	366	0	2145
GLOD4	51031	hgsc.bcm.edu	hg19	17	663190	663190	+	3'UTR	SNP	C	C	G			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	E9_UTR_3	NM_016080	10	18	0	17	180	435	0	619
GPR156	165829	hgsc.bcm.edu	hg19	3	119905559	119905559	+	Silent	SNP	C	C	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	T182T	NM_153002	37	81	0	59	172	353	0	1131
GUCA1C	9626	hgsc.bcm.edu	hg19	3	108672672	108672672	+	5'UTR	SNP	T	T	G			TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	E1_UTR_5	NM_005459	55	111	0	131	332	695	0	1029
GUCA1C	9626	hgsc.bcm.edu	hg19	3	108672672	108672672	+	5'UTR	SNP	T	T	G			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	E1_UTR_5	NM_005459	54	108	0	131	216	428	0	1029
HOOK1	51361	hgsc.bcm.edu	hg19	1	60338515	60338515	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G689S	NM_015888	29	77	0	66	120	371	1	765
IL1RAPL1	11141	hgsc.bcm.edu	hg19	X	29935625	29935625	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G275R	NM_014271	131	200	0	245	148	210	0	627
JAK2	3717	hgsc.bcm.edu	hg19	9	5078353	5078355	+	In_Frame_Del	DEL	TTA	TTA	-			TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	TTA	TTA	TTA	-	TTA	TTA	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	I682_E684>GG	NM_004972	2	400	0	480	5	752	0	1177
JAK2	3717	hgsc.bcm.edu	hg19	9	5078360	5078360	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	R683G	NM_004972	3	428	0	482	3	753	1	1191
JAK2	3717	hgsc.bcm.edu	hg19	9	5078360	5078360	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	R683G	NM_004972	180	408	0	482	193	426	1	1191
JAK2	3717	hgsc.bcm.edu	hg19	9	5078362	5078362	+	Missense_Mutation	SNP	A	A	C			TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	R683S	NM_004972	174	418	0	484	327	754	0	1182
JMJD1C	221037	hgsc.bcm.edu	hg19	10	64968045	64968045	+	Silent	SNP	C	C	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	A1128A	NM_032776	106	239	0	224	192	425	0	789
KIAA0922	23240	hgsc.bcm.edu	hg19	4	154542036	154542036	+	Intron	SNP	C	C	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	R1230_E27splice_region	NM_015196	130	281	0	344	237	446	5	2386
KIAA1109	84162	hgsc.bcm.edu	hg19	4	123183992	123183992	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	R2279H	NM_015312	69	156	0	163	169	386	0	1173
KIF13B	23303	hgsc.bcm.edu	hg19	8	29006214	29006214	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	E565K	NM_015254	229	521	0	500	185	412	1	1097
KRAS	3845	hgsc.bcm.edu	hg19	12	25378562	25378562	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	A146T	NM_033360	4	1248	0	1181	0	773	2	1360
KRAS	3845	hgsc.bcm.edu	hg19	12	25378562	25378562	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	A146T	NM_033360	510	1199	0	1181	210	428	2	1360
KRAS	3845	hgsc.bcm.edu	hg19	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	G12D	NM_033360	173	360	0	340	333	715	2	1145
LCT	3938	hgsc.bcm.edu	hg19	2	136548389	136548389	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	T1725M	NM_002299	113	224	0	209	188	432	0	931
LIFR	3977	hgsc.bcm.edu	hg19	5	38527392	38527392	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	R88C	NM_001127671	197	439	0	501	219	508	0	3056
MET	4233	hgsc.bcm.edu	hg19	7	116403117	116403117	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	R811H	NM_001127500	47	108	0	104	187	400	3	1283
METTL4	64863	hgsc.bcm.edu	hg19	18	2539090	2539090	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	R443Q	NM_022840	180	433	0	449	198	435	1	2318
MFAP3L	9848	hgsc.bcm.edu	hg19	4	170913360	170913360	+	Silent	SNP	G	G	C			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	T133T	NM_021647	16	45	0	56	113	373	0	1018
KMT2B	9757	hgsc.bcm.edu	hg19	12	49440154	49440154	+	Nonsense_Mutation	SNP	C	C	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	W1491*	NM_003482	48	169	0	155	109	400	0	625
MYH7B	57644	hgsc.bcm.edu	hg19	20	33575461	33575461	+	Missense_Mutation	SNP	G	G	T			TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	G459C	NM_020884	21	62	0	91	271	620	0	395
MYOCD	93649	hgsc.bcm.edu	hg19	17	12666635	12666635	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	E831K	NM_153604	91	191	0	174	180	352	1	1450
NAA11	84779	hgsc.bcm.edu	hg19	4	80246442	80246442	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	P197L	NM_032693	86	216	0	198	174	400	1	736
NCOA7	135112	hgsc.bcm.edu	hg19	6	126236518	126236518	+	Silent	SNP	C	C	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	P712P	NM_181782	68	181	1	165	160	396	0	1538
NCOR2	9612	hgsc.bcm.edu	hg19	12	124832723	124832723	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	E1319K	NM_001077261	20	42	0	29	180	372	0	217
NOBOX	135935	hgsc.bcm.edu	hg19	7	144098503	144098503	+	Silent	SNP	C	C	T			TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	P75P	NM_001080413	12	31	0	38	205	457	0	486
NOBOX	135935	hgsc.bcm.edu	hg19	7	144098503	144098503	+	Silent	SNP	C	C	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	P75P	NM_001080413	13	26	0	38	121	261	0	486
NPEPPS	9520	hgsc.bcm.edu	hg19	17	45656759	45656759	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	T141M	NM_006310	88	258	0	254	128	253	0	511
NPEPPS	9520	hgsc.bcm.edu	hg19	17	45656759	45656759	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	T141M	NM_006310	114	276	0	254	65	149	0	511
NT5C2	22978	hgsc.bcm.edu	hg19	10	104850741	104850741	+	Missense_Mutation	SNP	G	G	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	S408R	NM_012229	179	391	0	452	197	403	0	882
OR6P1	128366	hgsc.bcm.edu	hg19	1	158532614	158532614	+	Missense_Mutation	SNP	G	G	C			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	R261G	NM_001160325	102	219	0	192	172	393	0	922
PARK2	5071	hgsc.bcm.edu	hg19	6	161969981	161969981	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	V330M	NM_004562	17	37	0	35	260	524	3	1342
PARK2	5071	hgsc.bcm.edu	hg19	6	161969981	161969981	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	V330M	NM_004562	16	31	0	35	136	327	3	1342
PAX5	5079	hgsc.bcm.edu	hg19	9	37015115	37015116	+	Frame_Shift_Ins	INS	-	-	T			TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	-	-	-	T	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	E97fs	NM_016734	103	233	0	255	218	596	0	818
PAX5	5079	hgsc.bcm.edu	hg19	9	37020702	37020703	+	In_Frame_Ins	INS	-	-	TCACCTTGATGATCATCA			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	-	-	-	TCACCTTGATGATCATCA	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G48>VMIIKVS	NM_016734	41	112	0	92	104	306	0	464
PEX14	5195	hgsc.bcm.edu	hg19	1	10689759	10689759	+	Silent	SNP	C	C	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	P283P	NM_004565	63	131	1	119	150	336	0	212
PRKACG	5568	hgsc.bcm.edu	hg19	9	71628615	71628615	+	Missense_Mutation	SNP	G	G	C			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	R132G	NM_002732	32	73	0	47	169	355	0	717
PRKD1	5587	hgsc.bcm.edu	hg19	14	30107713	30107713	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	E323K	NM_002742	313	665	3	654	299	655	1	879
PRKD1	5587	hgsc.bcm.edu	hg19	14	30107713	30107713	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	E323K	NM_002742	323	698	3	654	177	347	1	879
PVRL3	25945	hgsc.bcm.edu	hg19	3	110845154	110845154	+	Missense_Mutation	SNP	A	A	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	A	A	A	T	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	R347S	NM_015480	258	537	0	646	193	417	0	1729
RFPL4B	442247	hgsc.bcm.edu	hg19	6	112671258	112671258	+	Silent	SNP	C	C	T			TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	S116S	NM_001013734	38	77	0	109	284	581	2	968
RFPL4B	442247	hgsc.bcm.edu	hg19	6	112671258	112671258	+	Silent	SNP	C	C	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	S116S	NM_001013734	43	84	0	109	140	314	2	968
RICTOR	253260	hgsc.bcm.edu	hg19	5	38950530	38950530	+	Missense_Mutation	SNP	A	A	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	A	A	A	T	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	D1140E	NM_152756	240	543	0	515	213	452	0	1044
SAMD13	148418	hgsc.bcm.edu	hg19	1	84815403	84815403	+	Silent	SNP	C	C	T			TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	Y99Y	NM_001010971	194	448	0	464	337	730	2	1438
SLC7A8	23428	hgsc.bcm.edu	hg19	14	23600747	23600747	+	Silent	SNP	G	G	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	R346R	NM_012244	47	96	0	55	198	428	0	873
SPEG	10290	hgsc.bcm.edu	hg19	2	220333881	220333881	+	Silent	SNP	G	G	C			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	S1165S	NM_005876	13	23	0	23	143	315	0	326
SPON1	10418	hgsc.bcm.edu	hg19	11	14156995	14156995	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G236R	NM_006108	33	82	0	83	165	382	0	777
SPTBN2	6712	hgsc.bcm.edu	hg19	11	66468071	66468071	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	R1167C	NM_006946	9	17	0	13	267	498	0	315
SPTBN2	6712	hgsc.bcm.edu	hg19	11	66468071	66468071	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	R1167C	NM_006946	7	18	0	13	161	327	0	315
SRRT	51593	hgsc.bcm.edu	hg19	7	100485932	100485932	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	P828L	NM_015908	40	79	0	102	287	613	0	833
SRRT	51593	hgsc.bcm.edu	hg19	7	100485932	100485932	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	P828L	NM_015908	55	134	0	102	154	335	0	833
TMC7	79905	hgsc.bcm.edu	hg19	16	19033072	19033072	+	Nonsense_Mutation	SNP	C	C	G			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	Y194*	NM_024847	199	607	1	594	112	423	0	822
TRIM29	23650	hgsc.bcm.edu	hg19	11	120008490	120008490	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	E84K	NM_012101	12	25	0	14	112	253	0	556
TTN	7273	hgsc.bcm.edu	hg19	2	179614922	179614922	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	A4069T	NM_133379	128	279	1	329	179	398	1	1136
UGT2A3	79799	hgsc.bcm.edu	hg19	4	69817252	69817252	+	Missense_Mutation	SNP	A	A	T			TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	A	A	A	T	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-03A-01D	TARGET-10-PAPSPN-10A-01D	V76E	NM_024743	44	109	0	120	346	678	0	1174
UNC13D	201294	hgsc.bcm.edu	hg19	17	73840547	73840547	+	5'UTR	SNP	C	C	A			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	E1_UTR_5	NM_199242	8	13	0	20	158	357	0	167
USH2A	7399	hgsc.bcm.edu	hg19	1	216270537	216270537	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	R1549Q	NM_206933	123	222	0	215	192	390	0	1166
XIRP2	129446	hgsc.bcm.edu	hg19	2	168107849	168107849	+	Missense_Mutation	SNP	A	A	T			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	A	A	A	T	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	N3316I	NM_152381	61	142	0	153	148	341	0	1680
XPO6	23214	hgsc.bcm.edu	hg19	16	28164100	28164100	+	Silent	SNP	G	G	A			TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPSPN-04A-01D	TARGET-10-PAPSPN-10A-01D	I368I	NM_015171	52	132	0	124	195	457	0	1625
ANKRD30B	374860	hgsc.bcm.edu	hg19	18	14842899	14842899	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	S909F	NM_001145029	132	657	1	960	427	1394	0	472
BVES	11149	hgsc.bcm.edu	hg19	6	105581473	105581473	+	Intron	SNP	C	C	G			TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	UTR_5_E2splice_region	NM_147147	136	248	0	125	441	942	0	663
BVES	11149	hgsc.bcm.edu	hg19	6	105581473	105581473	+	Intron	SNP	C	C	G			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	UTR_5_E2splice_region	NM_147147	70	154	0	125	396	822	0	663
C9	735	hgsc.bcm.edu	hg19	5	39331856	39331856	+	Silent	SNP	T	T	C			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	G179G	NM_001737	94	210	1	378	899	2036	0	611
CAT	847	hgsc.bcm.edu	hg19	11	34475370	34475370	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	R203Q	NM_001752	18	198	0	261	145	1149	0	548
CCT7	10574	hgsc.bcm.edu	hg19	2	73478382	73478382	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	A411V	NM_006429	21	194	0	236	52	389	1	394
CD109	135228	hgsc.bcm.edu	hg19	6	74528202	74528202	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	E1335K	NM_133493	31	369	1	570	101	971	1	569
CNOT1	23019	hgsc.bcm.edu	hg19	16	58608624	58608624	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	R623Q	NM_016284	17	227	0	221	155	1375	0	544
ACKR3	57007	hgsc.bcm.edu	hg19	2	237489375	237489375	+	Silent	SNP	C	C	T			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	A89A	NM_020311	53	147	0	231	338	1012	0	466
DDX4	54514	hgsc.bcm.edu	hg19	5	55110907	55110907	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	G598S	NM_001142549	41	561	0	642	67	980	0	608
DEPDC5	9681	hgsc.bcm.edu	hg19	22	32206620	32206626	+	Frame_Shift_Del	DEL	ACCTGCA	ACCTGCA	-			TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	ACCTGCA	ACCTGCA	ACCTGCA	-	ACCTGCA	ACCTGCA	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	T480_R482fs	NM_001136029	29	57	0	154	295	679	0	784
DEPDC5	9681	hgsc.bcm.edu	hg19	22	32206620	32206626	+	Frame_Shift_Del	DEL	ACCTGCA	ACCTGCA	-			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	ACCTGCA	ACCTGCA	ACCTGCA	-	ACCTGCA	ACCTGCA	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	T480_R482fs	NM_001136029	29	57	0	154	232	1178	0	784
DPP3	10072	hgsc.bcm.edu	hg19	11	66272160	66272160	+	Silent	SNP	C	C	T			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	P652P	NM_130443	11	63	0	107	81	724	0	514
DTHD1	401124	hgsc.bcm.edu	hg19	4	36296661	36296661	+	Missense_Mutation	SNP	G	G	C			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	R258P	NM_001136536	16	203	0	249	200	1586	0	821
FNDC1	84624	hgsc.bcm.edu	hg19	6	159688929	159688929	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	S1847F	NM_032532	145	310	0	331	460	930	0	652
FNDC1	84624	hgsc.bcm.edu	hg19	6	159688929	159688929	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	S1847F	NM_032532	94	206	0	331	879	1839	0	652
FPR2	2358	hgsc.bcm.edu	hg19	19	52272817	52272817	+	Silent	SNP	C	C	T			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	Y302Y	NM_001462	15	156	0	172	177	1525	0	537
GABRB3	2562	hgsc.bcm.edu	hg19	15	26792955	26792955	+	Silent	SNP	C	C	T			TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	L469L	NM_000814	36	81	0	103	414	860	0	612
GABRB3	2562	hgsc.bcm.edu	hg19	15	26792955	26792955	+	Silent	SNP	C	C	T			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	L469L	NM_000814	26	69	0	103	623	1347	0	612
GOLGA6B	55889	hgsc.bcm.edu	hg19	15	72956844	72956844	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	P498Q	NM_018652	8	173	0	240	10	209	0	267
C5AR2	27202	hgsc.bcm.edu	hg19	19	47844112	47844112	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	R19H	NM_018485	2	7	0	10	333	672	0	504
C5AR2	27202	hgsc.bcm.edu	hg19	19	47844112	47844112	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	R19H	NM_018485	7	26	0	10	187	397	0	504
HELQ	113510	hgsc.bcm.edu	hg19	4	84367215	84367215	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	R473C	NM_133636	21	336	1	482	77	1455	0	873
ITPR2	3709	hgsc.bcm.edu	hg19	12	26553126	26553126	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	V2489M	NM_002223	15	188	0	228	116	1170	0	597
KDM5C	8242	hgsc.bcm.edu	hg19	X	53224150	53224150	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	G1134E	NM_004187	54	79	0	184	294	464	0	480
KDM5C	8242	hgsc.bcm.edu	hg19	X	53224150	53224150	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	G1134E	NM_004187	62	69	0	184	1068	1185	0	480
GSE1	23199	hgsc.bcm.edu	hg19	16	85697157	85697157	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	E861K	NM_014615	37	84	0	148	353	715	0	519
GSE1	23199	hgsc.bcm.edu	hg19	16	85697157	85697157	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	E861K	NM_014615	38	94	0	148	136	264	0	519
KPNB1	3837	hgsc.bcm.edu	hg19	17	45742498	45742498	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	I325V	NM_002265	105	205	0	273	384	780	1	547
KPNB1	3837	hgsc.bcm.edu	hg19	17	45742498	45742498	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	I325V	NM_002265	90	192	0	273	535	1117	1	547
LAMA4	3910	hgsc.bcm.edu	hg19	6	112575171	112575171	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	P61L	NM_002290	5	28	0	22	77	502	0	405
LAMB1	3912	hgsc.bcm.edu	hg19	7	107594208	107594208	+	Intron	SNP	C	C	T			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	G952_E22splice_region	NM_002291	10	65	0	83	124	961	0	552
LOC407835	407835	hgsc.bcm.edu	hg19	7	128766645	128766645	+	RNA	SNP	C	C	G			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	E1_exon	NR_002144	4	39	0	71	59	545	0	251
MAP3K7	6885	hgsc.bcm.edu	hg19	6	91226208	91226208	+	3'UTR	SNP	G	G	A			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	E15_UTR_3	NM_145333	38	289	0	262	180	1319	0	633
MRPL45	84311	hgsc.bcm.edu	hg19	17	36455384	36455384	+	Silent	SNP	A	A	T			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	A	A	A	T	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	G104G	NM_032351	92	237	0	298	541	1159	0	608
MYEOV	26579	hgsc.bcm.edu	hg19	11	69063864	69063864	+	3'UTR	SNP	G	G	A			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	E3_UTR_3	NM_138768	16	35	0	45	89	294	0	506
NBEAL1	65065	hgsc.bcm.edu	hg19	2	203949272	203949272	+	Nonsense_Mutation	SNP	C	C	T			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	R360*	NM_001114132	57	545	0	682	239	1801	2	609
NLRP8	126205	hgsc.bcm.edu	hg19	19	56459222	56459222	+	5'UTR	SNP	G	G	A			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	E1_UTR_5	NM_176811	23	127	0	166	80	1004	0	583
NRAS	4893	hgsc.bcm.edu	hg19	1	115258744	115258744	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	G13D	NM_002524	1	496	0	454	2	810	1	538
NRAS	4893	hgsc.bcm.edu	hg19	1	115258744	115258744	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	G13D	NM_002524	108	296	0	454	664	1386	1	538
NT5C2	22978	hgsc.bcm.edu	hg19	10	104852955	104852955	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	R367Q	NM_012229	38	244	0	321	96	794	0	600
NT5C2	22978	hgsc.bcm.edu	hg19	10	104852977	104852977	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	S360P	NM_012229	80	247	0	334	282	802	0	603
NTRK2	4915	hgsc.bcm.edu	hg19	9	87636283	87636283	+	Silent	SNP	C	C	T			TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	I816I	NM_006180	16	55	0	137	168	719	0	489
OLFML2B	25903	hgsc.bcm.edu	hg19	1	161967734	161967734	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	V452A	NM_015441	45	114	2	189	268	596	0	498
OR1J1	347168	hgsc.bcm.edu	hg19	9	125240175	125240175	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	E11K	NM_001004451	15	166	0	185	159	1251	0	503
PCDH15	65217	hgsc.bcm.edu	hg19	10	55955503	55955503	+	Silent	SNP	C	C	T			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	S420S	NM_001142771	68	194	0	318	786	2243	0	586
PCDHAC1	56135	hgsc.bcm.edu	hg19	5	140308285	140308285	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	A603V	NM_018898	67	154	0	182	384	745	0	534
PCDHAC1	56135	hgsc.bcm.edu	hg19	5	140308285	140308285	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	A603V	NM_018898	72	141	0	182	438	948	0	534
POLD1	5424	hgsc.bcm.edu	hg19	19	50917040	50917040	+	Silent	SNP	C	C	T			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	G764G	NM_002691	11	45	1	47	262	737	3	446
PPP1R12A	4659	hgsc.bcm.edu	hg19	12	80199375	80199375	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	R666H	NM_002480	31	228	0	257	109	932	0	510
PRKDC	5591	hgsc.bcm.edu	hg19	8	48691319	48691319	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	R3843Q	NM_001081640	15	117	0	197	130	658	0	587
PRND	23627	hgsc.bcm.edu	hg19	20	4705436	4705436	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	A80V	NM_012409	15	39	1	72	291	599	1	474
PRND	23627	hgsc.bcm.edu	hg19	20	4705436	4705436	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	A80V	NM_012409	23	51	1	72	358	738	1	474
RBM26	64062	hgsc.bcm.edu	hg19	13	79945293	79945293	+	Missense_Mutation	SNP	G	G	C			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	R141G	NM_022118	53	115	0	202	537	1123	0	577
SETD3	84193	hgsc.bcm.edu	hg19	14	99866493	99866493	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	W427C	NM_032233	38	220	0	381	267	1265	0	584
SPINK5	11005	hgsc.bcm.edu	hg19	5	147499627	147499627	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	R790Q	NM_001127698	137	291	1	308	397	828	0	582
SPINK5	11005	hgsc.bcm.edu	hg19	5	147499627	147499627	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	R790Q	NM_001127698	93	216	1	308	368	786	0	582
SPSB3	90864	hgsc.bcm.edu	hg19	16	1827310	1827310	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	R286C	NM_080861	5	6	0	13	273	569	1	409
SPSB3	90864	hgsc.bcm.edu	hg19	16	1827310	1827310	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	R286C	NM_080861	6	11	0	13	36	85	1	409
SYT10	341359	hgsc.bcm.edu	hg19	12	33579405	33579405	+	Silent	SNP	G	G	A			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	V59V	NM_198992	16	131	1	163	136	965	0	561
TEP1	7011	hgsc.bcm.edu	hg19	14	20864804	20864804	+	Silent	SNP	G	G	A			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	L545L	NM_007110	11	124	0	158	130	1270	0	527
TRPC3	7222	hgsc.bcm.edu	hg19	4	122853689	122853689	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-03A-01D	TARGET-10-PAPZNK-10A-01D	H169Y	NM_003305	15	36	0	90	314	673	0	601
TRPC3	7222	hgsc.bcm.edu	hg19	4	122853689	122853689	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	H169Y	NM_003305	27	56	0	90	411	930	0	601
UNC80	285175	hgsc.bcm.edu	hg19	2	210654289	210654289	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	R253Q	NM_032504	76	190	0	322	465	942	0	600
USH2A	7399	hgsc.bcm.edu	hg19	1	215914876	215914876	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	S3851N	NM_206933	44	102	0	109	350	731	0	556
USP24	23358	hgsc.bcm.edu	hg19	1	55590200	55590200	+	Silent	SNP	T	T	A			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	T	T	T	A	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	P1354P	NM_015306	14	107	0	121	644	5349	0	585
WT1	7490	hgsc.bcm.edu	hg19	11	32450044	32450045	+	Frame_Shift_Ins	INS	-	-	A			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	-	-	-	A	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	L256fs	NM_024426	28	73	0	106	310	733	0	468
ZAN	7455	hgsc.bcm.edu	hg19	7	100348346	100348346	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	V450M	NM_003386	27	66	0	99	190	415	0	476
ZMYM3	9203	hgsc.bcm.edu	hg19	X	70465535	70465536	+	Frame_Shift_Ins	INS	-	-	AG			TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	-	-	-	AG	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PAPZNK-04A-01D	TARGET-10-PAPZNK-10A-01D	A948fs	NM_201599	4	132	0	290	6	830	0	504
ABCA12	26154	hgsc.bcm.edu	hg19	2	215848509	215848509	+	Missense_Mutation	SNP	G	G	T			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	T1097K	NM_015657	174	526	0	532	232	592	0	984
ABTB2	25841	hgsc.bcm.edu	hg19	11	34226200	34226200	+	Silent	SNP	G	G	A			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	N307N	NM_145804	22	45	0	52	158	452	0	384
AGBL4	84871	hgsc.bcm.edu	hg19	1	49128904	49128904	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	R215Q	NM_032785	142	371	0	353	242	610	0	1107
ATP13A4	84239	hgsc.bcm.edu	hg19	3	193166129	193166129	+	Intron	SNP	C	C	A			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	R676_E18splice_region	NM_032279	25	219	1	292	79	632	2	1171
ATP8A2	51761	hgsc.bcm.edu	hg19	13	26133137	26133137	+	Silent	SNP	T	T	G			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	T430T	NM_016529	190	582	0	860	213	643	0	1047
ATP8A2	51761	hgsc.bcm.edu	hg19	13	26133137	26133137	+	Silent	SNP	T	T	G			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	T430T	NM_016529	321	774	0	860	240	652	0	1047
ATRN	8455	hgsc.bcm.edu	hg19	20	3627622	3627622	+	3'UTR	SNP	T	T	G			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	E29_UTR_3	NM_139321	2	5	0	23	166	478	0	501
ATRN	8455	hgsc.bcm.edu	hg19	20	3627622	3627622	+	3'UTR	SNP	T	T	G			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	E29_UTR_3	NM_139321	4	7	0	23	159	457	0	501
C10orf99	387695	hgsc.bcm.edu	hg19	10	85933584	85933584	+	5'UTR	SNP	G	G	T			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	E1_UTR_5	NM_207373	13	325	0	466	12	570	0	523
C3orf55	152078	hgsc.bcm.edu	hg19	3	157318321	157318321	+	3'UTR	SNP	A	A	C			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	E4_UTR_3	NM_001130001	6	14	0	17	239	629	0	623
CDHR1	92211	hgsc.bcm.edu	hg19	10	85964337	85964337	+	Nonsense_Mutation	SNP	C	C	T			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	R280*	NM_033100	53	116	0	204	264	549	0	560
CDHR1	92211	hgsc.bcm.edu	hg19	10	85964337	85964337	+	Nonsense_Mutation	SNP	C	C	T			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	R280*	NM_033100	76	191	0	204	228	551	0	560
COL5A3	50509	hgsc.bcm.edu	hg19	19	10083597	10083597	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	V1258M	NM_015719	26	72	0	123	199	585	0	262
COL5A3	50509	hgsc.bcm.edu	hg19	19	10083597	10083597	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	V1258M	NM_015719	38	129	0	123	224	544	0	262
DMKN	93099	hgsc.bcm.edu	hg19	19	36004299	36004299	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	G27R	NM_033317	16	68	0	67	113	481	0	481
DSCAM	1826	hgsc.bcm.edu	hg19	21	41414360	41414360	+	Missense_Mutation	SNP	G	G	T			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	P1875H	NM_001389	49	103	0	169	290	590	0	368
DSCAM	1826	hgsc.bcm.edu	hg19	21	41414360	41414360	+	Missense_Mutation	SNP	G	G	T			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	P1875H	NM_001389	55	145	0	169	224	547	0	368
ELAVL2	1993	hgsc.bcm.edu	hg19	9	23692822	23692822	+	Silent	SNP	G	G	A			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	H271H	NM_004432	44	100	0	118	185	558	0	775
ELAVL2	1993	hgsc.bcm.edu	hg19	9	23692822	23692822	+	Silent	SNP	G	G	A			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	H271H	NM_004432	77	171	0	118	226	560	0	775
FHL3	2275	hgsc.bcm.edu	hg19	1	38464690	38464690	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	A96V	NM_004468	6	58	0	122	74	560	1	520
GPR156	165829	hgsc.bcm.edu	hg19	3	119887089	119887089	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	A412V	NM_153002	6	25	0	61	78	577	1	663
HLTF	6596	hgsc.bcm.edu	hg19	3	148793709	148793709	+	Silent	SNP	A	A	C			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	A118A	NM_003071	36	349	0	413	71	651	0	765
IMPG1	3617	hgsc.bcm.edu	hg19	6	76782136	76782136	+	Intron	SNP	T	T	A			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	T	T	T	A	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	K22_E1splice_region	NM_001563	105	296	0	341	188	656	0	1217
IMPG1	3617	hgsc.bcm.edu	hg19	6	76782136	76782136	+	Intron	SNP	T	T	A			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	T	T	T	A	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	K22_E1splice_region	NM_001563	132	346	0	341	245	625	0	1217
KCNK2	3776	hgsc.bcm.edu	hg19	1	215259898	215259898	+	Silent	SNP	C	C	T			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	T74T	NM_001017424	67	164	0	149	257	602	0	926
KRAS	3845	hgsc.bcm.edu	hg19	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	G12V	NM_033360	64	302	0	378	110	560	0	678
KRAS	3845	hgsc.bcm.edu	hg19	12	25398285	25398285	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	G12S	NM_033360	5	345	2	378	9	641	0	681
KRAS	3845	hgsc.bcm.edu	hg19	12	25398285	25398285	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	G12S	NM_033360	171	416	2	378	285	627	0	681
LTN1	26046	hgsc.bcm.edu	hg19	21	30365233	30365233	+	Missense_Mutation	SNP	C	C	G			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	G11A	NM_015565	18	49	0	58	181	476	0	635
MARCKS	4082	hgsc.bcm.edu	hg19	6	114178964	114178964	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	A15T	NM_002356	34	91	0	76	215	588	0	284
MLPH	79083	hgsc.bcm.edu	hg19	2	238449172	238449172	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	P401L	NM_001042467	6	30	0	45	205	578	0	55
MLPH	79083	hgsc.bcm.edu	hg19	2	238449172	238449172	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	P401L	NM_001042467	18	46	0	45	196	565	0	55
MTX2	10651	hgsc.bcm.edu	hg19	2	177135061	177135061	+	RNA	SNP	C	C	T			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	E2_exon	Unknown	54	139	0	145	163	441	0	422
NEFM	4741	hgsc.bcm.edu	hg19	8	24776160	24776160	+	3'UTR	SNP	T	T	A			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	T	T	T	A	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	E3_UTR_3	NM_001105541	14	27	0	25	231	584	0	958
OR4P4	81300	hgsc.bcm.edu	hg19	11	55406764	55406764	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	L311F	NM_001004124	48	292	0	308	60	283	0	365
PCDHA4	56144	hgsc.bcm.edu	hg19	5	140188890	140188890	+	Silent	SNP	G	G	A			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	A706A	NM_018907	4	8	0	24	173	523	0	340
PCDHA4	56144	hgsc.bcm.edu	hg19	5	140188890	140188890	+	Silent	SNP	G	G	A			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	A706A	NM_018907	6	18	0	24	189	478	0	340
PCDHA6	56142	hgsc.bcm.edu	hg19	5	140208928	140208928	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	V418M	NM_018909	11	28	0	57	169	511	0	252
PCDHA6	56142	hgsc.bcm.edu	hg19	5	140208928	140208928	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	V418M	NM_018909	16	45	0	57	176	434	0	252
PCDHB4	56131	hgsc.bcm.edu	hg19	5	140502114	140502114	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	H178Q	NM_018938	53	137	1	175	277	597	0	548
PCDHB4	56131	hgsc.bcm.edu	hg19	5	140502114	140502114	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	H178Q	NM_018938	74	185	1	175	253	579	0	548
PCDHGB5	56101	hgsc.bcm.edu	hg19	5	140778195	140778195	+	Silent	SNP	G	G	T			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	L167L	NM_018925	9	81	0	111	92	649	0	489
PGAP2	27315	hgsc.bcm.edu	hg19	11	3845133	3845133	+	Silent	SNP	G	G	A			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	S119S	NM_001145438	7	19	0	40	190	524	0	574
PGAP2	27315	hgsc.bcm.edu	hg19	11	3845133	3845133	+	Silent	SNP	G	G	A			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	S119S	NM_001145438	13	30	0	40	192	474	0	574
RP1	6101	hgsc.bcm.edu	hg19	8	55537344	55537344	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	A301D	NM_006269	101	272	0	226	225	636	0	620
RP1	6101	hgsc.bcm.edu	hg19	8	55537344	55537344	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	A301D	NM_006269	105	247	0	226	232	654	0	620
SLC17A7	57030	hgsc.bcm.edu	hg19	19	49938076	49938076	+	Silent	SNP	G	G	A			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	R166R	NM_020309	36	90	0	161	281	603	1	736
SLC17A7	57030	hgsc.bcm.edu	hg19	19	49938076	49938076	+	Silent	SNP	G	G	A			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	R166R	NM_020309	75	166	0	161	220	566	1	736
SNTB1	6641	hgsc.bcm.edu	hg19	8	121705999	121705999	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	R241W	NM_021021	41	126	0	188	215	580	1	551
SNTB1	6641	hgsc.bcm.edu	hg19	8	121705999	121705999	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	R241W	NM_021021	70	176	0	188	213	546	1	551
SOX6	55553	hgsc.bcm.edu	hg19	11	16077358	16077358	+	Silent	SNP	C	C	T			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	T397T	NM_033326	171	328	1	419	304	659	1	672
SOX6	55553	hgsc.bcm.edu	hg19	11	16077358	16077358	+	Silent	SNP	C	C	T			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	T397T	NM_033326	178	434	1	419	232	600	1	672
SPARC	6678	hgsc.bcm.edu	hg19	5	151045924	151045924	+	Silent	SNP	G	G	A			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	D244D	NM_003118	9	76	0	107	66	577	0	860
TAS1R2	80834	hgsc.bcm.edu	hg19	1	19166823	19166823	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	R597H	NM_152232	0	19	0	30	10	544	1	611
TAS1R2	80834	hgsc.bcm.edu	hg19	1	19166823	19166823	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	R597H	NM_152232	13	36	0	30	194	520	1	611
TNNT2	7139	hgsc.bcm.edu	hg19	1	201335963	201335963	+	Intron	SNP	C	C	T			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	K76_E7splice_region	NM_000364	59	105	0	110	213	553	0	695
UNC80	285175	hgsc.bcm.edu	hg19	2	210782664	210782664	+	Silent	SNP	G	G	T			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	G1665G	NM_032504	8	74	0	137	114	604	0	1194
ZFYVE28	57732	hgsc.bcm.edu	hg19	4	2272540	2272540	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-03A-01D	TARGET-10-PARAKF-10A-01D	R859H	NM_020972	6	20	0	50	250	557	1	167
ZFYVE28	57732	hgsc.bcm.edu	hg19	4	2272540	2272540	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	R859H	NM_020972	22	49	0	50	199	503	1	167
ZNF536	9745	hgsc.bcm.edu	hg19	19	30935520	30935520	+	Missense_Mutation	SNP	G	G	C			TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARAKF-04A-01D	TARGET-10-PARAKF-10A-01D	G351R	NM_014717	9	19	0	49	177	414	0	399
A1CF	29974	hgsc.bcm.edu	hg19	10	52610507	52610507	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A14V	NM_138933	82	418	1	110	168	857	0	427
ABCA4	24	hgsc.bcm.edu	hg19	1	94487272	94487272	+	Splice_Site	SNP	T	T	C			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G1591_E34splice	NM_000350	67	240	0	59	159	544	1	1548
ABCB1	5243	hgsc.bcm.edu	hg19	7	87168616	87168616	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R789*	NM_000927	47	266	0	86	172	817	0	1521
ACVR1C	130399	hgsc.bcm.edu	hg19	2	158406726	158406726	+	Silent	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	T241T	NM_145259	17	323	0	116	34	583	0	797
ADCYAP1R1	117	hgsc.bcm.edu	hg19	7	31146156	31146156	+	Missense_Mutation	SNP	G	G	C			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R422P	NM_001118	47	143	0	58	207	711	0	618
ANK3	288	hgsc.bcm.edu	hg19	10	61834210	61834210	+	Silent	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	S2143S	NM_020987	39	192	0	54	152	834	2	684
APAF1	317	hgsc.bcm.edu	hg19	12	99077004	99077004	+	Silent	SNP	T	T	C			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	S710S	NM_181861	69	395	0	126	190	639	2	1647
BEND7	222389	hgsc.bcm.edu	hg19	10	13538824	13538824	+	Silent	SNP	C	C	T			TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	T119T	NM_152751	2	525	0	116	9	753	0	538
BEND7	222389	hgsc.bcm.edu	hg19	10	13538824	13538824	+	Silent	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	T119T	NM_152751	147	428	0	116	275	929	0	538
BTNL3	10917	hgsc.bcm.edu	hg19	5	180419923	180419923	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R54W	NM_197975	53	191	0	65	149	552	2	821
BZW2	28969	hgsc.bcm.edu	hg19	7	16734516	16734516	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A237T	NM_001159767	67	288	0	97	176	926	2	937
C10orf107	219621	hgsc.bcm.edu	hg19	10	63445872	63445872	+	Silent	SNP	G	G	C			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	S48S	NM_173554	97	344	0	114	304	928	0	861
ELMSAN1	91748	hgsc.bcm.edu	hg19	14	74196389	74196389	+	Silent	SNP	A	A	G			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	P683P	NM_194278	29	145	1	44	178	751	0	235
C15orf27	123591	hgsc.bcm.edu	hg19	15	76452444	76452444	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A131T	NM_152335	152	526	0	162	174	557	1	197
C17orf104	284071	hgsc.bcm.edu	hg19	17	42744001	42744001	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	R241Q	NM_001145080	120	387	0	70	240	789	1	713
TSPEAR	54084	hgsc.bcm.edu	hg19	21	45949722	45949722	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	T250M	NM_144991	31	133	0	24	222	926	0	198
CACNA1H	8912	hgsc.bcm.edu	hg19	16	1250521	1250521	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G357S	NM_021098	14	23	0	14	224	567	0	29
CALCA	796	hgsc.bcm.edu	hg19	11	14990223	14990223	+	3'UTR	SNP	A	A	G			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	E4_UTR_3	NM_001033952	12	47	0	15	175	601	0	828
CDH26	60437	hgsc.bcm.edu	hg19	20	58569465	58569465	+	Silent	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	P529P	NM_177980	30	101	0	44	186	647	2	421
CELA2B	51032	hgsc.bcm.edu	hg19	1	15802979	15802979	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A23V	NM_015849	39	138	0	77	197	590	0	484
CHD1	1105	hgsc.bcm.edu	hg19	5	98206391	98206391	+	Silent	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A1326A	NM_001270	175	579	0	121	183	616	1	851
CHRM2	1129	hgsc.bcm.edu	hg19	7	136700181	136700181	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	T190M	NM_001006630	20	133	0	47	161	836	1	804
CLVS1	157807	hgsc.bcm.edu	hg19	8	62370982	62370982	+	Silent	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	T286T	NM_173519	57	187	0	54	196	656	0	1103
CNPY2	10330	hgsc.bcm.edu	hg19	12	56708659	56708659	+	Silent	SNP	T	T	C			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	P60P	NM_014255	31	112	0	61	176	609	0	467
CNTN3	5067	hgsc.bcm.edu	hg19	3	74334570	74334570	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	A864S	NM_020872	79	166	0	59	209	450	0	1087
CNTN3	5067	hgsc.bcm.edu	hg19	3	74334570	74334570	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A864S	NM_020872	72	140	0	59	216	507	0	1087
CNTN5	53942	hgsc.bcm.edu	hg19	11	100061943	100061943	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	V556I	NM_014361	25	243	0	86	43	605	0	1100
COL6A3	1293	hgsc.bcm.edu	hg19	2	238283227	238283227	+	Silent	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	N1169N	NM_004369	9	35	0	31	146	480	0	648
CPA6	57094	hgsc.bcm.edu	hg19	8	68396090	68396090	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R251*	NM_020361	75	242	0	94	218	664	1	866
CPAMD8	27151	hgsc.bcm.edu	hg19	19	17049216	17049216	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	F992S	NM_015692	45	77	0	24	260	574	0	707
CPSF6	11052	hgsc.bcm.edu	hg19	12	69656284	69656284	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R534H	NM_007007	65	167	0	73	201	569	2	666
CSMD1	64478	hgsc.bcm.edu	hg19	8	3063016	3063016	+	Intron	SNP	A	A	G			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	F1661_E31splice_region	NM_033225	63	277	0	82	183	651	0	1503
CSPG4	1464	hgsc.bcm.edu	hg19	15	75970179	75970179	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	F1667L	NM_001897	15	49	0	34	203	515	1	376
CYP2A6	1548	hgsc.bcm.edu	hg19	19	41354210	41354210	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R190C	NM_000762	95	302	0	101	251	785	0	1116
CYSLTR2	57105	hgsc.bcm.edu	hg19	13	49281757	49281757	+	Silent	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	T268T	NM_020377	124	289	0	101	249	614	2	616
DLGAP1	9229	hgsc.bcm.edu	hg19	18	3729240	3729240	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	R496W	NM_004746	15	35	0	13	188	586	4	649
DLGAP1	9229	hgsc.bcm.edu	hg19	18	3729240	3729240	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R496W	NM_004746	11	29	0	13	200	628	4	649
DMKN	93099	hgsc.bcm.edu	hg19	19	36003675	36003675	+	Silent	SNP	A	A	G			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	H148H	NM_033317	6	48	0	21	79	583	1	559
DMP1	1758	hgsc.bcm.edu	hg19	4	88583770	88583770	+	Silent	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	S264S	NM_001079911	29	129	0	52	134	566	0	1024
DNAH8	1769	hgsc.bcm.edu	hg19	6	38877310	38877310	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	R2960H	NM_001371	47	485	0	107	62	777	0	777
DPP3	10072	hgsc.bcm.edu	hg19	11	66254034	66254034	+	Silent	SNP	A	A	G			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	L128L	NM_130443	18	48	0	41	151	566	0	605
DROSHA	29102	hgsc.bcm.edu	hg19	5	31529138	31529138	+	Intron	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C7_E3splice_region	NM_013235	100	270	0	119	203	650	0	1073
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	103027472	103027472	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R1367H	NM_001080463	42	193	0	71	142	659	0	1063
DYNLL2	140735	hgsc.bcm.edu	hg19	17	56166708	56166708	+	3'UTR	SNP	T	T	G			TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	E3_UTR_3	NM_080677	24	55	0	21	143	533	0	339
DYNLL2	140735	hgsc.bcm.edu	hg19	17	56166708	56166708	+	3'UTR	SNP	T	T	G			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	E3_UTR_3	NM_080677	18	52	0	21	189	612	0	339
EDIL3	10085	hgsc.bcm.edu	hg19	5	83680118	83680118	+	Intron	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	K22_E1splice_region	NM_005711	7	16	0	19	99	393	1	560
ERAP2	64167	hgsc.bcm.edu	hg19	5	96244767	96244767	+	Silent	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	S705S	NM_022350	59	234	0	86	214	689	0	604
ERN2	10595	hgsc.bcm.edu	hg19	16	23713587	23713587	+	Silent	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	H411H	NM_033266	14	60	0	32	63	553	1	528
ESPN	83715	hgsc.bcm.edu	hg19	1	6505734	6505734	+	Silent	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	S401S	NM_031475	7	20	0	16	129	426	1	217
EXOC4	60412	hgsc.bcm.edu	hg19	7	133502284	133502284	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R574Q	NM_021807	34	155	1	50	177	863	0	931
F7	2155	hgsc.bcm.edu	hg19	13	113774713	113774713	+	3'UTR	SNP	G	G	A			TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	E9_UTR_3	NM_000131	0	44	0	20	11	524	0	80
F7	2155	hgsc.bcm.edu	hg19	13	113774713	113774713	+	3'UTR	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	E9_UTR_3	NM_000131	9	26	0	20	252	524	0	80
FAM111A	63901	hgsc.bcm.edu	hg19	11	58919427	58919427	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	L96F	NM_001142520	12	202	0	77	17	666	0	680
FAM155B	27112	hgsc.bcm.edu	hg19	X	68725872	68725872	+	Silent	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A249A	NM_015686	10	44	0	22	133	731	0	521
FAM189A2	9413	hgsc.bcm.edu	hg19	9	72003185	72003185	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R323Q	NM_004816	24	87	0	33	165	579	0	466
PIEZO2	63895	hgsc.bcm.edu	hg19	18	10789133	10789133	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	V705I	NM_022068	47	547	0	116	89	909	2	749
FAM58BP	339521	hgsc.bcm.edu	hg19	1	200182765	200182765	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A25V	NM_001105517	7	30	0	11	102	390	0	651
FBN3	84467	hgsc.bcm.edu	hg19	19	8154812	8154812	+	Silent	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	H2072H	NM_032447	23	66	0	21	208	530	2	862
FBXO9	26268	hgsc.bcm.edu	hg19	6	52958712	52958712	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R340H	NM_012347	90	415	0	79	173	922	0	645
FGF12	2257	hgsc.bcm.edu	hg19	3	192078282	192078282	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	G82V	NM_021032	8	400	0	114	14	540	0	1133
FGF12	2257	hgsc.bcm.edu	hg19	3	192078282	192078282	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G82V	NM_021032	167	350	0	114	294	618	0	1133
FGFR2	2263	hgsc.bcm.edu	hg19	10	123256192	123256192	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R574*	NM_022970	32	188	0	48	151	785	0	502
FLNA	2316	hgsc.bcm.edu	hg19	X	153587696	153587696	+	Silent	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	D1407D	NM_001456	7	49	0	16	127	761	0	68
FPR2	2358	hgsc.bcm.edu	hg19	19	52272603	52272603	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	K231R	NM_001462	77	315	0	113	156	566	1	1220
FUT3	2525	hgsc.bcm.edu	hg19	19	5844529	5844529	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	V108M	NM_000149	12	91	0	46	54	453	1	596
GCM2	9247	hgsc.bcm.edu	hg19	6	10874288	10874288	+	Silent	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	S487S	NM_004752	32	129	0	36	167	870	0	483
GPR112	139378	hgsc.bcm.edu	hg19	X	135427194	135427194	+	Silent	SNP	C	C	T			TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	A443A	NM_153834	24	93	0	27	225	722	2	3712
GPR112	139378	hgsc.bcm.edu	hg19	X	135427194	135427194	+	Silent	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A443A	NM_153834	22	91	0	27	251	926	2	3712
GPR112	139378	hgsc.bcm.edu	hg19	X	135453674	135453674	+	Silent	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	S2528S	NM_153834	38	206	0	40	233	1032	0	2381
GREM1	26585	hgsc.bcm.edu	hg19	15	33023374	33023374	+	Silent	SNP	A	A	G			TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	L161L	NM_013372	18	43	0	28	265	537	0	607
GREM1	26585	hgsc.bcm.edu	hg19	15	33023374	33023374	+	Silent	SNP	A	A	G			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	L161L	NM_013372	21	53	0	28	252	618	0	607
GRIA4	2893	hgsc.bcm.edu	hg19	11	105483114	105483114	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	H67R	NM_001077244	56	273	0	106	160	658	0	859
GRIA4	2893	hgsc.bcm.edu	hg19	11	105623792	105623792	+	Silent	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	S111S	NM_001077244	74	231	0	108	185	612	2	1369
GYG2	8908	hgsc.bcm.edu	hg19	X	2795273	2795273	+	Silent	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	S392S	NM_001079855	42	254	1	68	175	923	0	470
HECW1	23072	hgsc.bcm.edu	hg19	7	43590146	43590146	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G1451S	NM_015052	33	105	0	38	83	404	0	389
HERC2	8924	hgsc.bcm.edu	hg19	15	28386936	28386936	+	Silent	SNP	A	A	G			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	H3919H	NM_004667	11	207	0	95	46	612	0	725
HGSNAT	138050	hgsc.bcm.edu	hg19	8	43028884	43028884	+	Silent	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	P283P	NM_152419	110	376	0	131	175	595	1	503
HYAL4	23553	hgsc.bcm.edu	hg19	7	123508308	123508308	+	5'UTR	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	E3_UTR_5	NM_012269	78	326	0	70	227	907	0	956
IDUA	3425	hgsc.bcm.edu	hg19	4	996186	996186	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R368C	NM_000203	15	49	0	28	43	149	0	33
INCA1	388324	hgsc.bcm.edu	hg19	17	4891779	4891779	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A196V	NM_213726	10	63	0	32	113	549	0	1138
IQCB1	9657	hgsc.bcm.edu	hg19	3	121500696	121500696	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R302H	NM_001023571	54	241	0	95	180	648	2	1091
IRAK3	11213	hgsc.bcm.edu	hg19	12	66622068	66622068	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G208S	NM_001142523	49	348	0	113	94	632	0	579
IZUMO1	284359	hgsc.bcm.edu	hg19	19	49247795	49247795	+	Silent	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G104G	NM_182575	48	123	0	53	159	566	0	686
KIAA0226	9711	hgsc.bcm.edu	hg19	3	197431478	197431478	+	Missense_Mutation	SNP	T	T	G			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	H133P	NM_014687	19	59	0	33	166	516	2	662
KIAA1217	56243	hgsc.bcm.edu	hg19	10	24832527	24832527	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	V1443A	NM_019590	40	201	0	46	153	842	1	1655
KIAA1328	57536	hgsc.bcm.edu	hg19	18	34424235	34424235	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R101H	NM_020776	83	368	1	87	202	954	0	878
KIAA1549	57670	hgsc.bcm.edu	hg19	7	138601627	138601627	+	Silent	SNP	A	A	G			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A915A	NM_020910	7	56	0	26	124	651	1	717
KIF1A	547	hgsc.bcm.edu	hg19	2	241676472	241676472	+	Intron	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	D1234_E36splice_region	NM_004321	35	146	0	47	125	452	0	134
KRT26	353288	hgsc.bcm.edu	hg19	17	38926339	38926339	+	Silent	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	N239N	NM_181539	70	223	0	116	171	598	3	853
KRTAP24-1	643803	hgsc.bcm.edu	hg19	21	31654604	31654604	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	T216M	NM_001085455	61	443	0	85	172	1155	3	765
L1CAM	3897	hgsc.bcm.edu	hg19	X	153131253	153131253	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	L818P	NM_000425	29	138	0	41	191	789	0	337
LAMB1	3912	hgsc.bcm.edu	hg19	7	107569954	107569954	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R1550*	NM_002291	99	611	0	138	179	893	1	741
LCN8	138307	hgsc.bcm.edu	hg19	9	139649951	139649951	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	V82M	NM_178469	7	34	0	19	75	545	0	113
LOC100499484-C9ORF174	57653	hgsc.bcm.edu	hg19	9	100133972	100133972	+	RNA	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	E46_exon	Unknown	41	157	0	56	147	558	1	618
LONRF3	79836	hgsc.bcm.edu	hg19	X	118108893	118108893	+	Silent	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	P50P	NM_024778	7	24	0	7	135	580	1	236
LY75	4065	hgsc.bcm.edu	hg19	2	160706597	160706597	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R1015H	NM_002349	22	403	0	100	36	721	0	1036
LYPD6B	130576	hgsc.bcm.edu	hg19	2	150069619	150069619	+	Nonsense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	R148*	NM_177964	107	208	0	80	271	579	0	1046
LYPD6B	130576	hgsc.bcm.edu	hg19	2	150069619	150069619	+	Nonsense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R148*	NM_177964	114	228	0	80	306	682	0	1046
MAP2	4133	hgsc.bcm.edu	hg19	2	210561005	210561005	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	D1371N	NM_002374	25	55	0	28	236	482	0	988
MAP2	4133	hgsc.bcm.edu	hg19	2	210561005	210561005	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	D1371N	NM_002374	27	62	0	28	283	617	0	988
MAP2K5	5607	hgsc.bcm.edu	hg19	15	67835677	67835677	+	Silent	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	L2L	NM_002757	31	143	0	64	144	530	1	590
MDGA2	161357	hgsc.bcm.edu	hg19	14	47530493	47530493	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	I197T	NM_182830	75	376	0	89	185	874	0	574
KMT2C	58508	hgsc.bcm.edu	hg19	7	151859421	151859421	+	Silent	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	N3747N	NM_170606	41	219	0	47	159	834	1	779
MLLT1	4298	hgsc.bcm.edu	hg19	19	6270592	6270592	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R64H	NM_005934	14	66	0	30	122	522	4	1112
MMEL1	79258	hgsc.bcm.edu	hg19	1	2528053	2528053	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	A450T	NM_033467	37	99	0	34	218	476	0	197
MPDZ	8777	hgsc.bcm.edu	hg19	9	13247746	13247746	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R24H	NM_003829	71	287	0	117	190	595	0	1026
MYO9A	4649	hgsc.bcm.edu	hg19	15	72122642	72122642	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R2283H	NM_006901	13	179	0	71	23	691	1	481
NAP1L2	4674	hgsc.bcm.edu	hg19	X	72434069	72434069	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R87H	NM_021963	22	478	0	122	50	753	1	887
NBEA	26960	hgsc.bcm.edu	hg19	13	35733888	35733888	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	V1194I	NM_015678	41	149	0	67	195	683	1	984
NEFM	4741	hgsc.bcm.edu	hg19	8	24771894	24771894	+	Silent	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R196R	NM_005382	5	11	0	13	108	366	0	223
NHSL2	340527	hgsc.bcm.edu	hg19	X	71356981	71356981	+	Silent	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	S266S	NM_001013627	44	238	0	69	155	834	1	784
NLGN2	57555	hgsc.bcm.edu	hg19	17	7318989	7318989	+	Silent	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	D399D	NM_020795	51	139	0	57	195	529	0	647
NOS3	4846	hgsc.bcm.edu	hg19	7	150698506	150698506	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	R474H	NM_000603	3	73	0	29	9	480	0	156
NOS3	4846	hgsc.bcm.edu	hg19	7	150698506	150698506	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R474H	NM_000603	35	125	0	29	262	783	0	156
NRAS	4893	hgsc.bcm.edu	hg19	1	115258744	115258744	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G13D	NM_002524	154	355	0	139	248	587	1	1076
NRCAM	4897	hgsc.bcm.edu	hg19	7	107832180	107832180	+	Silent	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	S626S	NM_005010	15	184	0	92	84	933	1	686
NT5C1B	93034	hgsc.bcm.edu	hg19	2	18765479	18765479	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A316T	NM_001002006	58	188	0	97	141	519	1	643
OGDHL	55753	hgsc.bcm.edu	hg19	10	50948793	50948793	+	Silent	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	T701T	NM_018245	18	92	0	35	127	736	1	359
OR51Q1	390061	hgsc.bcm.edu	hg19	11	5444385	5444385	+	3'UTR	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	E1_UTR_3	NM_001004757	37	78	0	31	282	669	0	815
PAPOLB	56903	hgsc.bcm.edu	hg19	7	4900455	4900455	+	Silent	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	N329N	NM_020144	55	558	0	123	90	935	0	1239
PARG	8505	hgsc.bcm.edu	hg19	10	51077568	51077568	+	Missense_Mutation	SNP	C	C	G			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	E674D	NM_003631	190	848	0	144	168	667	0	874
PCNX	22990	hgsc.bcm.edu	hg19	14	71455403	71455403	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G811R	NM_014982	13	64	0	33	162	817	0	591
PCSK1	5122	hgsc.bcm.edu	hg19	5	95735830	95735830	+	Silent	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	P419P	NM_000439	14	228	1	106	26	615	0	660
PHACTR3	116154	hgsc.bcm.edu	hg19	20	58348439	58348439	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R245Q	NM_183244	10	37	0	29	133	444	0	634
PHF2	5253	hgsc.bcm.edu	hg19	9	96416759	96416759	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R285Q	NM_005392	8	61	0	31	47	472	0	125
PKHD1L1	93035	hgsc.bcm.edu	hg19	8	110535055	110535055	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	P4089L	NM_177531	35	91	0	52	158	535	0	1343
PLEKHA4	57664	hgsc.bcm.edu	hg19	19	49357260	49357260	+	Intron	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	K392_E11splice_region	NM_020904	10	33	0	17	159	488	1	512
PLRG1	5356	hgsc.bcm.edu	hg19	4	155468900	155468900	+	Silent	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	T74T	NM_002669	74	453	0	116	82	628	1	839
PRRG3	79057	hgsc.bcm.edu	hg19	X	150869108	150869108	+	Missense_Mutation	SNP	T	T	A			TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	T	T	T	A	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	I100N	NM_024082	29	106	0	53	171	623	0	645
PRSS35	167681	hgsc.bcm.edu	hg19	6	84233480	84233480	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	P107L	NM_001170423	18	90	0	34	146	605	0	749
PRSS50	29122	hgsc.bcm.edu	hg19	3	46753860	46753860	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	Q345R	NM_013270	14	46	0	19	128	471	0	528
PTPRU	10076	hgsc.bcm.edu	hg19	1	29606612	29606612	+	Silent	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	T609T	NM_005704	12	38	0	28	149	541	1	500
RACGAP1P	83956	hgsc.bcm.edu	hg19	12	45457376	45457376	+	RNA	SNP	G	G	T			TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	E1_exon	NR_026583	45	97	0	55	232	478	5	1580
RACGAP1P	83956	hgsc.bcm.edu	hg19	12	45457376	45457376	+	RNA	SNP	G	G	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	E1_exon	NR_026583	28	82	0	55	253	557	5	1580
RAPGEF5	9771	hgsc.bcm.edu	hg19	7	22233059	22233059	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	S224F	NM_012294	46	297	0	77	136	789	0	430
RBM11	54033	hgsc.bcm.edu	hg19	21	15593459	15593459	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	S101G	NM_144770	172	1026	0	141	179	1267	0	416
RFC3	5983	hgsc.bcm.edu	hg19	13	34410363	34410363	+	Silent	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A334A	NM_002915	102	330	0	101	171	602	0	1348
RGS22	26166	hgsc.bcm.edu	hg19	8	101054051	101054051	+	Silent	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	Y639Y	NM_015668	228	596	0	134	244	615	2	880
RIMBP2	23504	hgsc.bcm.edu	hg19	12	130927111	130927111	+	Silent	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	N245N	NM_015347	15	166	0	95	36	491	0	231
RPS6KC1	26750	hgsc.bcm.edu	hg19	1	213415602	213415602	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R928H	NM_012424	32	107	0	40	257	615	0	998
RTTN	25914	hgsc.bcm.edu	hg19	18	67860578	67860578	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R318H	NM_173630	35	166	0	56	160	788	1	1012
RXFP3	51289	hgsc.bcm.edu	hg19	5	33937618	33937618	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R258H	NM_016568	14	30	0	18	120	397	1	201
SASH3	54440	hgsc.bcm.edu	hg19	X	128926804	128926804	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G265S	NM_018990	34	96	0	19	156	797	0	637
SCML1	6322	hgsc.bcm.edu	hg19	X	17768147	17768147	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R119H	NM_006746	33	214	0	69	166	820	1	638
SGCZ	137868	hgsc.bcm.edu	hg19	8	14095181	14095181	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	P115L	NM_139167	73	246	0	88	152	587	1	1110
SIM2	6493	hgsc.bcm.edu	hg19	21	38098479	38098479	+	Silent	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	Y201Y	NM_005069	24	110	0	29	204	1035	0	419
SLAMF6	114836	hgsc.bcm.edu	hg19	1	160466023	160466023	+	Silent	SNP	G	G	A			TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	T70T	NM_052931	220	496	0	145	281	576	0	1035
SLAMF6	114836	hgsc.bcm.edu	hg19	1	160466023	160466023	+	Silent	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	T70T	NM_052931	226	510	0	145	290	641	0	1035
SLC15A1	6564	hgsc.bcm.edu	hg19	13	99338442	99338442	+	Intron	SNP	A	A	G			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	Q645_E22splice_region	NM_005073	15	60	0	41	129	428	0	524
SLC1A7	6512	hgsc.bcm.edu	hg19	1	53608113	53608113	+	Silent	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	P3P	NM_006671	16	40	0	20	140	503	4	463
SLC4A1	6521	hgsc.bcm.edu	hg19	17	42335831	42335831	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R346H	NM_000342	15	53	0	16	199	718	1	553
SLC4A9	83697	hgsc.bcm.edu	hg19	5	139747383	139747383	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	Y752H	NM_031467	19	61	0	34	248	566	0	458
SLC6A14	11254	hgsc.bcm.edu	hg19	X	115584251	115584251	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	I410T	NM_007231	312	1494	0	183	187	928	2	1576
SLTM	79811	hgsc.bcm.edu	hg19	15	59191792	59191792	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	V294M	NM_001013843	35	358	0	130	57	601	0	760
SMAP2	64744	hgsc.bcm.edu	hg19	1	40887786	40887786	+	3'UTR	SNP	T	T	C			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	E10_UTR_3	NM_022733	5	35	0	27	179	578	0	725
SMARCA1	6594	hgsc.bcm.edu	hg19	X	128633796	128633796	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-03A-01D	TARGET-10-PARBRK-10A-01D	R397H	NM_003069	168	688	0	145	222	807	0	781
SMARCA1	6594	hgsc.bcm.edu	hg19	X	128642075	128642075	+	Splice_Site	SNP	T	T	C			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A271_E7splice	NM_003069	26	120	0	36	207	1049	0	1172
SMCHD1	23347	hgsc.bcm.edu	hg19	18	2707869	2707869	+	Silent	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	S737S	NM_015295	20	273	0	103	57	1062	0	2023
SNX6	58533	hgsc.bcm.edu	hg19	14	35050779	35050779	+	Silent	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	F286F	NM_152233	120	628	0	115	199	1059	0	605
SORCS3	22986	hgsc.bcm.edu	hg19	10	106974255	106974255	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A811T	NM_014978	16	130	0	47	92	655	0	455
SOX9	6662	hgsc.bcm.edu	hg19	17	70120179	70120179	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R394Q	NM_000346	18	115	0	30	42	225	0	198
SSPO	23145	hgsc.bcm.edu	hg19	7	149480639	149480639	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R782H	NM_198455	15	89	0	23	146	696	1	88
SSPO	23145	hgsc.bcm.edu	hg19	7	149490460	149490460	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R1979H	NM_198455	11	36	0	15	140	709	0	65
SV2B	9899	hgsc.bcm.edu	hg19	15	91803638	91803638	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	T336M	NM_014848	40	156	1	77	159	600	1	890
TIGD4	201798	hgsc.bcm.edu	hg19	4	153692020	153692020	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	Y46C	NM_145720	44	509	0	119	55	763	0	650
DCSTAMP	81501	hgsc.bcm.edu	hg19	8	105368455	105368455	+	3'UTR	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	E4_UTR_3	NM_030788	52	154	0	43	161	585	3	1009
TMEM132B	114795	hgsc.bcm.edu	hg19	12	126004093	126004093	+	Silent	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	E400E	NM_052907	53	126	0	49	247	601	0	779
TMEM163	81615	hgsc.bcm.edu	hg19	2	135214271	135214271	+	3'UTR	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	E8_UTR_3	NM_030923	19	102	0	62	164	617	4	1377
TMPRSS3	64699	hgsc.bcm.edu	hg19	21	43802088	43802088	+	3'UTR	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	E9_UTR_3	NM_032405	52	269	0	49	197	1243	0	392
TMX4	56255	hgsc.bcm.edu	hg19	20	7980417	7980417	+	Silent	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	V143V	NM_021156	75	136	0	62	263	557	0	850
TNC	3371	hgsc.bcm.edu	hg19	9	117849375	117849375	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	T212M	NM_002160	21	40	0	27	174	492	0	440
TNR	7143	hgsc.bcm.edu	hg19	1	175293485	175293485	+	Intron	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	S1318_E22splice_region	NM_003285	51	183	0	67	158	596	0	2774
TRPV5	56302	hgsc.bcm.edu	hg19	7	142625777	142625777	+	Intron	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	V254_E6splice_region	NM_019841	36	145	0	44	147	801	1	955
TSSK3	81629	hgsc.bcm.edu	hg19	1	32829240	32829240	+	Missense_Mutation	SNP	A	A	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A	A	A	T	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	T64S	NM_052841	33	107	0	69	186	601	0	1120
TTN	7273	hgsc.bcm.edu	hg19	2	179432759	179432759	+	Missense_Mutation	SNP	T	T	G			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	S23466R	NM_133378	72	341	0	128	149	609	0	474
TWIST2	117581	hgsc.bcm.edu	hg19	2	239757124	239757124	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R90C	NM_057179	13	55	0	22	89	303	1	89
URB1	9875	hgsc.bcm.edu	hg19	21	33694188	33694188	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	E1803K	NM_014825	15	107	0	41	150	1013	1	337
USP36	57602	hgsc.bcm.edu	hg19	17	76823357	76823357	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	M220T	NM_025090	14	161	0	63	77	828	0	644
USP36	57602	hgsc.bcm.edu	hg19	17	76832297	76832299	+	In_Frame_Del	DEL	GAG	GAG	-			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	GAG	GAG	GAG	-	GAG	GAG	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	F49_S50>F	NM_025090	70	193	0	76	230	855	0	476
VSIG10	54621	hgsc.bcm.edu	hg19	12	118533423	118533423	+	Silent	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	S92S	NM_019086	22	71	0	31	145	540	1	338
WDR47	22911	hgsc.bcm.edu	hg19	1	109554327	109554327	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	M114T	NM_014969	11	139	0	49	63	748	0	658
ZBTB43	23099	hgsc.bcm.edu	hg19	9	129595474	129595474	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R229Q	NM_014007	12	35	0	15	144	512	0	388
ZNF106	64397	hgsc.bcm.edu	hg19	15	42742679	42742679	+	Silent	SNP	T	T	C			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	K574K	NM_022473	46	196	0	76	170	611	3	964
ZNF236	7776	hgsc.bcm.edu	hg19	18	74536271	74536271	+	5'UTR	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	E1_UTR_5	NM_007345	31	224	0	64	142	835	1	427
ZNF391	346157	hgsc.bcm.edu	hg19	6	27368847	27368847	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R233H	NM_001076781	52	279	0	88	149	881	4	1275
ZNF534	147658	hgsc.bcm.edu	hg19	19	52942224	52942224	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R504H	NM_001143938	33	124	0	64	159	535	1	744
ZNF589	51385	hgsc.bcm.edu	hg19	3	48309923	48309923	+	Nonsense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	Q248*	NM_016089	58	182	0	88	166	560	0	600
ZNF620	253639	hgsc.bcm.edu	hg19	3	40557807	40557807	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	R241Q	NM_175888	11	167	0	50	58	664	0	869
ZNF732	654254	hgsc.bcm.edu	hg19	4	265742	265742	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARBRK-04A-01D	TARGET-10-PARBRK-10A-01D	G302R	NM_001137608	62	230	0	91	183	665	1	874
ANKS1B	56899	hgsc.bcm.edu	hg19	12	99898326	99898326	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	D456Y	NM_152788	68	161	1	244	368	777	0	755
ATP11C	286410	hgsc.bcm.edu	hg19	X	138901499	138901499	+	Missense_Mutation	SNP	G	C	C			TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	Q82E	NM_173694	79	80	0	120	380	387	0	665
AXIN1	8312	hgsc.bcm.edu	hg19	16	396528	396528	+	Missense_Mutation	SNP	G	G	T			TARGET-10-PARFTR-03A-01D	TARGET-10-PARFTR-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-03A-01D	TARGET-10-PARFTR-10A-01D	S166R	NM_181050	56	163	1	205	162	476	0	256
AXIN1	8312	hgsc.bcm.edu	hg19	16	396528	396528	+	Missense_Mutation	SNP	G	G	T			TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	S166R	NM_181050	39	74	1	205	359	721	0	256
CDK13	8621	hgsc.bcm.edu	hg19	7	40038909	40038959	+	Splice_Site	DEL	TTATTCAATTTGCTTGATTGTATATAAAAACTTTAGAACTATATTTGATAG	TTATTCAATTTGCTTGATTGTATATAAAAACTTTAGAACTATATTTGATAG	-			TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	TTATTCAATTTGCTTGATTGTATATAAAAACTTTAGAACTATATTTGATAG	TTATTCAATTTGCTTGATTGTATATAAAAACTTTAGAACTATATTTGATAG	TTATTCAATTTGCTTGATTGTATATAAAAACTTTAGAACTATATTTGATAG	-	TTATTCAATTTGCTTGATTGTATATAAAAACTTTAGAACTATATTTGATAG	TTATTCAATTTGCTTGATTGTATATAAAAACTTTAGAACTATATTTGATAG	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	K681_E4splice	NM_003718	29	106	0	145	71	858	0	793
DNAI1	27019	hgsc.bcm.edu	hg19	9	34520703	34520703	+	Silent	SNP	G	G	A			TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	A683A	NM_012144	24	88	0	209	202	740	1	822
GLIS3	169792	hgsc.bcm.edu	hg19	9	4117861	4117861	+	Silent	SNP	G	G	A			TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	A384A	NM_152629	36	72	0	194	237	486	1	523
IRF2	3660	hgsc.bcm.edu	hg19	4	185329321	185329332	+	In_Frame_Del	DEL	TCACCGTACTAT	TCACCGTACTAT	-			TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	TCACCGTACTAT	TCACCGTACTAT	TCACCGTACTAT	-	TCACCGTACTAT	TCACCGTACTAT	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	D170_N174>D	NM_002199	4	197	0	303	19	816	0	2175
KDM1A	23028	hgsc.bcm.edu	hg19	1	23408768	23408768	+	Missense_Mutation	SNP	A	A	C			TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	Y761S	NM_015013	14	199	0	308	34	800	0	649
LRRC4	64101	hgsc.bcm.edu	hg19	7	127669833	127669833	+	Silent	SNP	G	G	A			TARGET-10-PARFTR-03A-01D	TARGET-10-PARFTR-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-03A-01D	TARGET-10-PARFTR-10A-01D	T287T	NM_022143	13	21	0	38	166	480	0	168
LRRC4	64101	hgsc.bcm.edu	hg19	7	127669833	127669833	+	Silent	SNP	G	G	A			TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	T287T	NM_022143	12	21	0	38	318	660	0	168
NT5C2	22978	hgsc.bcm.edu	hg19	10	104852955	104852955	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	R367Q	NM_012229	7	221	0	337	18	867	0	409
NT5C2	22978	hgsc.bcm.edu	hg19	10	104857107	104857107	+	Missense_Mutation	SNP	G	G	C			TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	R238G	NM_012229	10	316	0	329	29	1016	0	618
NT5C2	22978	hgsc.bcm.edu	hg19	10	104857107	104857107	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	R238W	NM_012229	4	316	0	329	5	1016	0	618
NT5C2	22978	hgsc.bcm.edu	hg19	10	104899222	104899222	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	R39Q	NM_012229	12	462	0	506	34	948	1	988
OBSCN	84033	hgsc.bcm.edu	hg19	1	228479805	228479805	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	G3516R	NM_001098623	5	62	0	187	26	601	0	489
PANX3	116337	hgsc.bcm.edu	hg19	11	124489353	124489353	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PARFTR-03A-01D	TARGET-10-PARFTR-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-03A-01D	TARGET-10-PARFTR-10A-01D	V234A	NM_052959	3	197	0	189	9	462	0	690
PANX3	116337	hgsc.bcm.edu	hg19	11	124489353	124489353	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	V234A	NM_052959	66	133	0	189	356	743	0	690
PDIA2	64714	hgsc.bcm.edu	hg19	16	335375	335376	+	Frame_Shift_Ins	INS	-	-	T			TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	-	-	-	T	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	L287fs	NM_006849	18	27	0	114	229	516	0	47
PDS5A	23244	hgsc.bcm.edu	hg19	4	39839801	39839801	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	G1229S	NM_001100399	23	211	0	404	135	935	0	815
PHF6	84295	hgsc.bcm.edu	hg19	X	133549136	133549136	+	Nonsense_Mutation	SNP	C	C	T			TARGET-10-PARFTR-03A-01D	TARGET-10-PARFTR-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-03A-01D	TARGET-10-PARFTR-10A-01D	R274*	NM_032458	232	303	0	259	179	247	1	420
PHF6	84295	hgsc.bcm.edu	hg19	X	133549136	133549136	+	Nonsense_Mutation	SNP	C	T	T			TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	R274*	NM_032458	219	222	0	259	380	384	1	420
PLAT	5327	hgsc.bcm.edu	hg19	8	42048937	42048937	+	Splice_Site	SNP	G	G	A			TARGET-10-PARFTR-03A-01D	TARGET-10-PARFTR-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-03A-01D	TARGET-10-PARFTR-10A-01D	Q24_E3splice	NM_033011	1	125	0	175	6	443	1	402
PLAT	5327	hgsc.bcm.edu	hg19	8	42048937	42048937	+	Splice_Site	SNP	G	G	A			TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	Q24_E3splice	NM_033011	37	91	0	175	335	656	1	402
SETD2	29072	hgsc.bcm.edu	hg19	3	47147534	47147534	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PARFTR-03A-01D	TARGET-10-PARFTR-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-03A-01D	TARGET-10-PARFTR-10A-01D	R1598*	NM_014159	152	380	0	369	195	473	0	869
SETD2	29072	hgsc.bcm.edu	hg19	3	47147534	47147534	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	R1598*	NM_014159	144	306	0	369	371	777	0	869
SLC26A10	65012	hgsc.bcm.edu	hg19	12	58016356	58016356	+	Silent	SNP	C	C	T			TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	S241S	NM_133489	16	201	1	479	45	735	0	720
SLCO2B1	11309	hgsc.bcm.edu	hg19	11	74876973	74876973	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARFTR-03A-01D	TARGET-10-PARFTR-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-03A-01D	TARGET-10-PARFTR-10A-01D	R143C	NM_007256	32	81	0	130	182	441	0	356
SLCO2B1	11309	hgsc.bcm.edu	hg19	11	74876973	74876973	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	R143C	NM_007256	28	52	0	130	320	635	0	356
STAG2	10735	hgsc.bcm.edu	hg19	X	123185249	123185249	+	Intron	SNP	G	G	A			TARGET-10-PARFTR-03A-01D	TARGET-10-PARFTR-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-03A-01D	TARGET-10-PARFTR-10A-01D	Q399_E14splice_region	NM_001042749	167	225	0	244	197	271	0	511
STAG2	10735	hgsc.bcm.edu	hg19	X	123185249	123185249	+	Intron	SNP	G	A	A			TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	Q399_E14splice_region	NM_001042749	149	152	0	244	464	480	0	511
STX4	6810	hgsc.bcm.edu	hg19	16	31051126	31051126	+	3'UTR	SNP	G	G	A			TARGET-10-PARFTR-03A-01D	TARGET-10-PARFTR-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-03A-01D	TARGET-10-PARFTR-10A-01D	E10_UTR_3	NM_004604	38	107	0	183	178	455	0	598
STX4	6810	hgsc.bcm.edu	hg19	16	31051126	31051126	+	3'UTR	SNP	G	G	A			TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	E10_UTR_3	NM_004604	27	75	0	183	335	704	0	598
UBR4	23352	hgsc.bcm.edu	hg19	1	19420600	19420600	+	Silent	SNP	G	G	A			TARGET-10-PARFTR-03A-01D	TARGET-10-PARFTR-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-03A-01D	TARGET-10-PARFTR-10A-01D	L4594L	NM_020765	47	121	0	166	191	488	0	642
UBR4	23352	hgsc.bcm.edu	hg19	1	19420600	19420600	+	Silent	SNP	G	G	A			TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	L4594L	NM_020765	31	69	0	166	346	692	0	642
WHSC1	7468	hgsc.bcm.edu	hg19	4	1962801	1962801	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARFTR-03A-01D	TARGET-10-PARFTR-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-03A-01D	TARGET-10-PARFTR-10A-01D	E1099K	NM_001042424	4	401	0	498	6	511	0	413
WHSC1	7468	hgsc.bcm.edu	hg19	4	1962801	1962801	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARFTR-04A-01D	TARGET-10-PARFTR-10A-01D	E1099K	NM_001042424	156	293	0	498	372	784	0	413
ABCC9	10060	hgsc.bcm.edu	hg19	12	21970231	21970231	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	Y1261C	NM_005691	121	232	0	263	312	692	1	1446
ANKRD24	170961	hgsc.bcm.edu	hg19	19	4215981	4215981	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	R402W	NM_133475	13	47	0	42	255	603	0	721
ANKRD24	170961	hgsc.bcm.edu	hg19	19	4215981	4215981	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	R402W	NM_133475	16	56	0	42	261	612	0	721
BCAP29	55973	hgsc.bcm.edu	hg19	7	107234414	107234414	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	V70I	NM_018844	143	349	0	561	319	834	0	1433
BCAP29	55973	hgsc.bcm.edu	hg19	7	107234414	107234414	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	V70I	NM_018844	193	432	0	561	345	780	0	1433
BCORL1	63035	hgsc.bcm.edu	hg19	X	129189991	129189992	+	Frame_Shift_Ins	INS	-	-	CC			TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	-	-	-	CC	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	P1672fs	NM_021946	21	21	0	31	224	257	0	369
SH3D21	79729	hgsc.bcm.edu	hg19	1	36772708	36772708	+	5'UTR	SNP	C	C	A			TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	UTR_5	NM_024676	19	49	0	28	168	418	0	652
CAD	790	hgsc.bcm.edu	hg19	2	27461419	27461419	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	R1661W	NM_004341	2	63	0	57	9	563	1	662
CAD	790	hgsc.bcm.edu	hg19	2	27461419	27461419	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	R1661W	NM_004341	27	66	0	57	260	562	1	662
CCDC18	343099	hgsc.bcm.edu	hg19	1	93646308	93646308	+	Missense_Mutation	SNP	G	G	C			TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	R74P	NM_206886	19	44	0	17	110	255	0	325
CRLF2	64109	hgsc.bcm.edu	hg19	X	1314966	1314966	+	Missense_Mutation	SNP	A	A	C			TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	F232C	NM_022148	35	1059	0	1129	21	657	0	527
CRLF2	64109	hgsc.bcm.edu	hg19	X	1314966	1314966	+	Missense_Mutation	SNP	A	A	C			TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	F232C	NM_022148	457	1105	0	1129	329	710	0	527
CST7	8530	hgsc.bcm.edu	hg19	20	24930009	24930009	+	5'UTR	SNP	C	C	T			TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	E1_UTR_5	NM_003650	7	16	0	22	194	492	0	347
DIAPH2	1730	hgsc.bcm.edu	hg19	X	96185743	96185743	+	Missense_Mutation	SNP	G	G	C			TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	M330I	NM_006729	50	294	1	386	56	422	0	500
FGFBP2	83888	hgsc.bcm.edu	hg19	4	15964293	15964293	+	Missense_Mutation	SNP	C	C	G			TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	A154P	NM_031950	27	61	0	77	247	590	1	654
FGFBP2	83888	hgsc.bcm.edu	hg19	4	15964293	15964293	+	Missense_Mutation	SNP	C	C	G			TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	A154P	NM_031950	36	82	0	77	300	654	1	654
GALNT9	50614	hgsc.bcm.edu	hg19	12	132863009	132863009	+	Silent	SNP	G	G	A			TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	A82A	NM_001122636	9	20	0	25	211	477	0	181
GDF7	151449	hgsc.bcm.edu	hg19	2	20870365	20870365	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	P178L	NM_182828	6	11	0	13	112	269	0	182
GDF7	151449	hgsc.bcm.edu	hg19	2	20870365	20870365	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	P178L	NM_182828	6	9	0	13	142	332	0	182
GLT1D1	144423	hgsc.bcm.edu	hg19	12	129360542	129360542	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	I51T	NM_144669	141	360	1	332	288	736	0	901
GLT1D1	144423	hgsc.bcm.edu	hg19	12	129360542	129360542	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	I51T	NM_144669	143	366	1	332	349	788	0	901
HIST1H2AM	8336	hgsc.bcm.edu	hg19	6	27860884	27860884	+	Missense_Mutation	SNP	G	G	C			TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	A15G	NM_003514	12	35	0	22	248	571	0	799
HMCN1	83872	hgsc.bcm.edu	hg19	1	186056666	186056666	+	Silent	SNP	C	C	T			TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	N3084N	NM_031935	69	165	1	178	324	707	0	896
HMCN1	83872	hgsc.bcm.edu	hg19	1	186056666	186056666	+	Silent	SNP	C	C	T			TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	N3084N	NM_031935	76	173	1	178	348	772	0	896
IL1A	3552	hgsc.bcm.edu	hg19	2	113539372	113539372	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	L43P	NM_000575	12	156	0	199	28	847	2	816
JAK2	3717	hgsc.bcm.edu	hg19	9	5078360	5078360	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	R683G	NM_004972	91	293	4	517	272	869	0	1055
JAK2	3717	hgsc.bcm.edu	hg19	9	5089726	5089726	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	T875N	NM_004972	19	502	0	604	28	735	0	1235
KIAA0368	23392	hgsc.bcm.edu	hg19	9	114172481	114172481	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	D975G	NM_001080398	61	131	0	172	276	679	2	1558
KIAA0368	23392	hgsc.bcm.edu	hg19	9	114172481	114172481	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	D975G	NM_001080398	38	97	0	172	338	772	2	1558
KIAA1217	56243	hgsc.bcm.edu	hg19	10	24833379	24833379	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	P1727H	NM_019590	61	162	0	165	273	655	1	2620
KIAA1217	56243	hgsc.bcm.edu	hg19	10	24833379	24833379	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	P1727H	NM_019590	58	180	0	165	312	693	1	2620
MDGA2	161357	hgsc.bcm.edu	hg19	14	47530637	47530637	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	R149H	NM_182830	75	191	0	305	313	729	0	755
MDGA2	161357	hgsc.bcm.edu	hg19	14	47530637	47530637	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	R149H	NM_182830	104	221	0	305	312	696	0	755
NLRP10	338322	hgsc.bcm.edu	hg19	11	7981943	7981943	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	R406W	NM_176821	20	54	0	56	292	648	2	835
PAX5	5079	hgsc.bcm.edu	hg19	9	37020723	37020723	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	I41T	NM_016734	68	91	0	90	232	325	0	483
PCDH7	5099	hgsc.bcm.edu	hg19	4	30921926	30921926	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	P1109L	NM_032457	91	209	0	165	249	604	0	778
PRPF8	10594	hgsc.bcm.edu	hg19	17	1565324	1565324	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	K1300E	NM_006445	14	152	0	177	85	645	0	818
QSER1	79832	hgsc.bcm.edu	hg19	11	32954423	32954423	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	P411L	NM_001076786	16	92	0	142	90	688	1	1194
SAMD15	161394	hgsc.bcm.edu	hg19	14	77844780	77844780	+	Missense_Mutation	SNP	A	A	T			TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	A	A	A	T	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	E340V	NM_001010860	35	70	0	144	320	781	0	2033
SAMD15	161394	hgsc.bcm.edu	hg19	14	77844780	77844780	+	Missense_Mutation	SNP	A	A	T			TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	A	A	A	T	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	E340V	NM_001010860	50	120	0	144	360	820	0	2033
SETD2	29072	hgsc.bcm.edu	hg19	3	47125722	47125723	+	Frame_Shift_Ins	INS	-	-	CC			TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	-	-	-	CC	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	R1850fs	NM_014159	84	226	0	225	257	683	0	1332
STMN2	11075	hgsc.bcm.edu	hg19	8	80577095	80577095	+	Nonsense_Mutation	SNP	G	G	T			TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	E176*	NM_007029	78	216	0	185	224	566	0	1617
STMN2	11075	hgsc.bcm.edu	hg19	8	80577095	80577095	+	Nonsense_Mutation	SNP	G	G	T			TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	E176*	NM_007029	126	253	0	185	272	640	0	1617
TEP1	7011	hgsc.bcm.edu	hg19	14	20841838	20841838	+	Silent	SNP	T	T	A			TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	T	T	T	A	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-03A-01D	TARGET-10-PARGHW-10A-01D	A2201A	NM_007110	0	153	0	65	7	641	0	673
TEP1	7011	hgsc.bcm.edu	hg19	14	20841838	20841838	+	Silent	SNP	T	T	A			TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	T	T	T	A	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	A2201A	NM_007110	46	106	0	65	310	662	0	673
TSEN2	80746	hgsc.bcm.edu	hg19	3	12533669	12533669	+	Missense_Mutation	SNP	G	G	C			TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	R75P	NM_025265	161	397	0	492	331	761	0	882
USH2A	7399	hgsc.bcm.edu	hg19	1	216040454	216040454	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARGHW-04A-01D	TARGET-10-PARGHW-10A-01D	R2914*	NM_206933	104	261	0	232	309	705	0	1563
DST	667	hgsc.bcm.edu	hg19	6	56481211	56481211	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARIAD-03A-01D	TARGET-10-PARIAD-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARIAD-03A-01D	TARGET-10-PARIAD-10A-01D	V2352M	NM_001723	59	286	0	118	189	696	7	2861
FCGBP	8857	hgsc.bcm.edu	hg19	19	40364025	40364025	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARIAD-03A-01D	TARGET-10-PARIAD-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARIAD-03A-01D	TARGET-10-PARIAD-10A-01D	D4873N	NM_003890	13	60	0	63	166	619	26	2387
KCNH6	81033	hgsc.bcm.edu	hg19	17	61611517	61611517	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARIAD-03A-01D	TARGET-10-PARIAD-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARIAD-03A-01D	TARGET-10-PARIAD-10A-01D	V316I	NM_030779	19	67	0	87	143	458	6	2178
KRT25	147183	hgsc.bcm.edu	hg19	17	38910213	38910213	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PARIAD-03A-01D	TARGET-10-PARIAD-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARIAD-03A-01D	TARGET-10-PARIAD-10A-01D	R190*	NM_181534	96	348	0	203	215	719	4	2393
PIK3CD	5293	hgsc.bcm.edu	hg19	1	9780856	9780857	+	In_Frame_Ins	INS	-	-	GGC			TARGET-10-PARIAD-03A-01D	TARGET-10-PARIAD-10A-01D	-	-	-	GGC	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARIAD-03A-01D	TARGET-10-PARIAD-10A-01D	H526>QA	NM_005026	6	108	0	138	25	421	0	186
PIK3R1	5295	hgsc.bcm.edu	hg19	5	67589603	67589604	+	In_Frame_Ins	INS	-	-	GTG			TARGET-10-PARIAD-03A-01D	TARGET-10-PARIAD-10A-01D	-	-	-	GTG	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARIAD-03A-01D	TARGET-10-PARIAD-10A-01D	VinsF456	NM_181523	13	408	0	148	29	725	0	882
SOAT2	8435	hgsc.bcm.edu	hg19	12	53514642	53514642	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARIAD-03A-01D	TARGET-10-PARIAD-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARIAD-03A-01D	TARGET-10-PARIAD-10A-01D	R371Q	NM_003578	75	293	0	233	207	712	0	2456
WNT10B	7480	hgsc.bcm.edu	hg19	12	49362097	49362097	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PARIAD-03A-01D	TARGET-10-PARIAD-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARIAD-03A-01D	TARGET-10-PARIAD-10A-01D	R115*	NM_003394	3	120	0	106	22	627	0	2317
ATP2B2	491	hgsc.bcm.edu	hg19	3	10387188	10387188	+	Silent	SNP	G	G	A			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	I861I	NM_001001331	41	126	0	221	210	609	0	1028
CA5A	763	hgsc.bcm.edu	hg19	16	87925490	87925491	+	Frame_Shift_Ins	INS	-	-	GGGG			TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	-	-	-	GGGG	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	Y230fs	NM_001739	7	32	0	51	106	343	0	160
CCZ1	51622	hgsc.bcm.edu	hg19	7	5965309	5965311	+	In_Frame_Del	DEL	CTT	CTT	-			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	CTT	CTT	CTT	-	CTT	CTT	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	F480_L481>L	NM_015622	154	659	0	800	145	1001	0	1002
CNTN6	27255	hgsc.bcm.edu	hg19	3	1424716	1424716	+	Frame_Shift_Del	DEL	G	G	-			TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	G	G	G	-	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	V753fs	NM_014461	96	165	0	307	217	554	0	712
CNTN6	27255	hgsc.bcm.edu	hg19	3	1424716	1424716	+	Frame_Shift_Del	DEL	G	G	-			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	G	G	G	-	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	V753fs	NM_014461	88	157	0	307	174	511	0	712
COL2A1	1280	hgsc.bcm.edu	hg19	12	48369230	48369230	+	Silent	SNP	G	G	A			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	D1183D	NM_033150	16	35	0	117	200	579	0	662
DNAJB3	414061	hgsc.bcm.edu	hg19	2	234652389	234652389	+	Silent	SNP	G	G	A			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	D58D	NM_001001394	5	19	0	35	126	540	0	448
DUSP8	1850	hgsc.bcm.edu	hg19	11	1579465	1579470	+	In_Frame_Del	DEL	TGAGGA	TGAGGA	-			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	TGAGGA	TGAGGA	TGAGGA	-	TGAGGA	TGAGGA	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	V190_N192>D	NM_004420	18	72	0	149	114	386	0	57
MVB12B	89853	hgsc.bcm.edu	hg19	9	129148855	129148855	+	Silent	SNP	C	C	T			TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	N109N	NM_033446	5	130	1	127	26	606	0	868
MVB12B	89853	hgsc.bcm.edu	hg19	9	129148855	129148855	+	Silent	SNP	C	C	T			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	N109N	NM_033446	39	136	1	127	219	646	0	868
FRMD4A	55691	hgsc.bcm.edu	hg19	10	13743373	13743373	+	Silent	SNP	T	T	C			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	Q314Q	NM_018027	43	139	0	205	216	591	2	534
FRMD4A	55691	hgsc.bcm.edu	hg19	10	13743444	13743444	+	Missense_Mutation	SNP	C	C	G			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	G291R	NM_018027	34	116	0	206	206	582	0	566
GLTSCR1	29998	hgsc.bcm.edu	hg19	19	48197834	48197834	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	P916S	NM_015711	7	129	0	155	27	510	0	204
GLTSCR1	29998	hgsc.bcm.edu	hg19	19	48197834	48197834	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	P916S	NM_015711	11	36	0	155	154	431	0	204
GRM1	2911	hgsc.bcm.edu	hg19	6	146480705	146480705	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	V308I	NM_000838	25	78	0	104	170	478	1	1199
GRM1	2911	hgsc.bcm.edu	hg19	6	146480705	146480705	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	V308I	NM_000838	1	76	0	104	14	499	1	1199
HSH2D	84941	hgsc.bcm.edu	hg19	19	16268153	16268153	+	Missense_Mutation	SNP	T	T	G			TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	L203R	NM_032855	39	114	0	125	195	515	0	673
HSH2D	84941	hgsc.bcm.edu	hg19	19	16268153	16268153	+	Missense_Mutation	SNP	T	T	G			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	L203R	NM_032855	25	74	0	125	222	541	0	673
IFNGR1	3459	hgsc.bcm.edu	hg19	6	137519140	137519140	+	3'UTR	SNP	C	C	T			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	E7_UTR_3	NM_000416	65	216	0	134	233	653	0	954
KRAS	3845	hgsc.bcm.edu	hg19	12	25398251	25398251	+	Missense_Mutation	SNP	A	A	C			TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	L23R	NM_033360	8	214	0	225	20	635	0	712
KRAS	3845	hgsc.bcm.edu	hg19	12	25398251	25398251	+	Missense_Mutation	SNP	A	A	C			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	L23R	NM_033360	57	217	0	225	223	664	0	712
KRAS	3845	hgsc.bcm.edu	hg19	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	G12D	NM_033360	72	281	0	296	177	651	0	704
KRAS	3845	hgsc.bcm.edu	hg19	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	G12D	NM_033360	6	278	0	296	32	702	0	704
LOXL2	4017	hgsc.bcm.edu	hg19	8	23160893	23160894	+	Frame_Shift_Ins	INS	-	-	CCCTAGGGAGGGGGACC			TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	-	-	-	CCCTAGGGAGGGGGACC	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	E633fs	NM_002318	64	214	0	293	173	589	0	423
LOXL2	4017	hgsc.bcm.edu	hg19	8	23160893	23160894	+	Frame_Shift_Ins	INS	-	-	CCCTAGGGAGGGGGACC			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	-	-	-	CCCTAGGGAGGGGGACC	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	E633fs	NM_002318	30	222	0	293	147	793	0	423
LPIN2	9663	hgsc.bcm.edu	hg19	18	2921647	2921648	+	RNA	INS	-	-	GGGG			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	-	-	-	GGGG	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	R776_E18exon	NM_014646	3	153	0	135	11	670	0	465
MADD	8567	hgsc.bcm.edu	hg19	11	47331124	47331124	+	Silent	SNP	A	A	T			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	A	A	A	T	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	T1313T	NM_130476	36	134	0	224	194	591	0	962
KMT2B	9757	hgsc.bcm.edu	hg19	12	49434897	49434898	+	In_Frame_Ins	INS	-	-	TACTAACGTACT			TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	-	-	-	TACTAACGTACT	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	G2219>EYVSR	NM_003482	22	69	0	119	148	483	0	679
KMT2B	9757	hgsc.bcm.edu	hg19	12	49434897	49434898	+	In_Frame_Ins	INS	-	-	TACTAACGTACT			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	-	-	-	TACTAACGTACT	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	G2219>EYVSR	NM_003482	18	44	0	119	120	509	0	679
MLLT1	4298	hgsc.bcm.edu	hg19	19	6222603	6222603	+	Silent	SNP	G	G	A			TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	S213S	NM_005934	12	46	0	69	129	533	0	170
MLLT1	4298	hgsc.bcm.edu	hg19	19	6222603	6222603	+	Silent	SNP	G	G	A			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	S213S	NM_005934	4	31	0	69	21	568	0	170
NEBL	10529	hgsc.bcm.edu	hg19	10	21101731	21101731	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	V166M	NM_213569	33	101	0	143	165	540	0	1010
NT5C2	22978	hgsc.bcm.edu	hg19	10	104852955	104852955	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	R367Q	NM_012229	77	252	0	252	224	674	1	456
NUMBL	9253	hgsc.bcm.edu	hg19	19	41175899	41175899	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	G355S	NM_004756	30	77	0	106	170	501	0	864
NUMBL	9253	hgsc.bcm.edu	hg19	19	41175899	41175899	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	G355S	NM_004756	1	40	0	106	13	489	0	864
PCDH11Y	83259	hgsc.bcm.edu	hg19	Y	4925461	4925461	+	Silent	SNP	C	C	T			TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	D188D	NM_032971	9	69	0	69	27	264	0	339
PCDH11Y	83259	hgsc.bcm.edu	hg19	Y	4925461	4925461	+	Silent	SNP	C	C	T			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	D188D	NM_032971	50	82	0	69	167	244	0	339
POLRMT	5442	hgsc.bcm.edu	hg19	19	618558	618558	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	G1118S	NM_005035	142	313	0	335	213	534	0	94
POLRMT	5442	hgsc.bcm.edu	hg19	19	618558	618558	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	G1118S	NM_005035	69	173	0	335	215	555	0	94
PTPN14	5784	hgsc.bcm.edu	hg19	1	214557424	214557424	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	G592S	NM_005401	15	39	0	48	110	505	1	428
PYHIN1	149628	hgsc.bcm.edu	hg19	1	158908294	158908294	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	L116F	NM_198930	47	162	0	154	178	604	0	1122
QPRT	23475	hgsc.bcm.edu	hg19	16	29706452	29706452	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	R161C	NM_014298	48	115	0	138	208	486	0	545
QPRT	23475	hgsc.bcm.edu	hg19	16	29706452	29706452	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	R161C	NM_014298	14	42	0	138	200	541	0	545
SLC35B1	10237	hgsc.bcm.edu	hg19	17	47782603	47782603	+	Silent	SNP	C	C	T			TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	P137P	NM_005827	8	178	0	177	33	611	0	581
SLC35B1	10237	hgsc.bcm.edu	hg19	17	47782603	47782603	+	Silent	SNP	C	C	T			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	P137P	NM_005827	45	138	0	177	225	666	0	581
SLC4A11	83959	hgsc.bcm.edu	hg19	20	3215246	3215246	+	Missense_Mutation	SNP	C	C	G			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	G103R	NM_032034	19	43	0	68	203	577	0	227
SUN2	25777	hgsc.bcm.edu	hg19	22	39147353	39147353	+	Missense_Mutation	SNP	T	T	A			TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	T	T	T	A	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	M50L	NM_015374	69	261	0	252	179	620	0	373
SUN2	25777	hgsc.bcm.edu	hg19	22	39147353	39147353	+	Missense_Mutation	SNP	T	T	A			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	T	T	T	A	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	M50L	NM_015374	5	141	0	252	16	600	0	373
TFCP2L1	29842	hgsc.bcm.edu	hg19	2	121981788	121981788	+	3'UTR	SNP	A	A	G			TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	E15_UTR_3	NM_014553	15	21	0	26	183	588	0	677
TFCP2L1	29842	hgsc.bcm.edu	hg19	2	121981788	121981788	+	3'UTR	SNP	A	A	G			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	E15_UTR_3	NM_014553	0	21	0	26	17	575	0	677
TFF3	7033	hgsc.bcm.edu	hg19	21	43733696	43733696	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	G57D	NM_003226	23	75	0	108	123	583	0	394
TFF3	7033	hgsc.bcm.edu	hg19	21	43733696	43733696	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	G57D	NM_003226	6	49	0	108	18	559	0	394
TNKS	8658	hgsc.bcm.edu	hg19	8	9473125	9473125	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	R311Q	NM_003747	29	102	0	112	194	766	0	937
USH2A	7399	hgsc.bcm.edu	hg19	1	216373017	216373017	+	Missense_Mutation	SNP	T	T	G			TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	S1255R	NM_206933	81	181	0	187	218	572	0	801
USH2A	7399	hgsc.bcm.edu	hg19	1	216373017	216373017	+	Missense_Mutation	SNP	T	T	G			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	S1255R	NM_206933	40	121	0	187	194	513	0	801
ZNF618	114991	hgsc.bcm.edu	hg19	9	116811955	116811955	+	Silent	SNP	G	G	A			TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-03A-01D	TARGET-10-PARJZZ-10A-01D	A698A	NM_133374	8	22	0	27	209	525	3	479
ZNF618	114991	hgsc.bcm.edu	hg19	9	116811955	116811955	+	Silent	SNP	G	G	A			TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARJZZ-04A-01D	TARGET-10-PARJZZ-10A-01D	A698A	NM_133374	8	16	0	27	176	479	3	479
AFAP1	60312	hgsc.bcm.edu	hg19	4	7811391	7811391	+	Missense_Mutation	SNP	G	G	T			TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	P335Q	NM_001134647	14	259	0	316	31	453	0	893
ARID1B	57492	hgsc.bcm.edu	hg19	6	157528402	157528402	+	Missense_Mutation	SNP	A	A	C			TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	S2043R	NM_020732	6	52	0	101	40	444	0	587
BCAS3	54828	hgsc.bcm.edu	hg19	17	58946019	58946019	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	I187V	NM_017679	17	639	0	902	7	448	0	1144
ARRDC1-AS1	85026	hgsc.bcm.edu	hg19	9	140510519	140510519	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	D45N	NM_032937	10	96	0	125	47	437	0	356
CCDC60	160777	hgsc.bcm.edu	hg19	12	119961617	119961617	+	Missense_Mutation	SNP	T	T	A			TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	T	T	T	A	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	L408H	NM_178499	7	67	0	108	70	498	0	1473
CD36	948	hgsc.bcm.edu	hg19	7	80293717	80293717	+	Intron	SNP	T	T	C			TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	Y204_E7splice_region	NM_001001548	20	199	0	289	33	500	0	658
COL28A1	340267	hgsc.bcm.edu	hg19	7	7555439	7555439	+	Intron	SNP	A	A	C			TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	K294_E8splice_region	NM_001037763	13	282	0	473	19	483	0	628
DNAH8	1769	hgsc.bcm.edu	hg19	6	38818080	38818080	+	Silent	SNP	A	A	C			TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	R1534R	NM_001371	21	252	0	377	43	427	0	797
IQCF2	389123	hgsc.bcm.edu	hg19	3	51897238	51897238	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARPNM-04A-01D	TARGET-10-PARPNM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPNM-04A-01D	TARGET-10-PARPNM-10A-01D	R116H	NM_203424	15	189	0	109	29	415	3	881
KRAS	3845	hgsc.bcm.edu	hg19	12	25378561	25378561	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	A146V	NM_033360	26	598	2	891	36	479	0	748
LOXL3	84695	hgsc.bcm.edu	hg19	2	74762448	74762448	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	R517H	NM_032603	25	42	0	68	235	469	3	1435
LOXL3	84695	hgsc.bcm.edu	hg19	2	74762448	74762448	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARPNM-04A-01D	TARGET-10-PARPNM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPNM-04A-01D	TARGET-10-PARPNM-10A-01D	R517H	NM_032603	6	123	0	68	32	418	3	1435
LRRC8C	84230	hgsc.bcm.edu	hg19	1	90178891	90178891	+	Silent	SNP	A	A	G			TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	E254E	NM_032270	11	129	0	158	38	476	0	1059
MYH7	4625	hgsc.bcm.edu	hg19	14	23885406	23885406	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	K1587R	NM_000257	11	136	0	147	47	469	0	953
NRAS	4893	hgsc.bcm.edu	hg19	1	115258747	115258747	+	Missense_Mutation	SNP	C	C	G			TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	G12A	NM_002524	54	198	0	321	134	475	0	1246
NRAS	4893	hgsc.bcm.edu	hg19	1	115258747	115258747	+	Missense_Mutation	SNP	C	C	G			TARGET-10-PARPNM-04A-01D	TARGET-10-PARPNM-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPNM-04A-01D	TARGET-10-PARPNM-10A-01D	G12A	NM_002524	15	316	0	321	35	478	0	1246
PHGDH	26227	hgsc.bcm.edu	hg19	1	120277951	120277951	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	K226R	NM_006623	5	46	0	48	61	473	0	1157
PI4KA	5297	hgsc.bcm.edu	hg19	22	21083965	21083965	+	Silent	SNP	C	C	T			TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	L1423L	NM_058004	48	80	0	109	251	491	3	395
PI4KA	5297	hgsc.bcm.edu	hg19	22	21083965	21083965	+	Silent	SNP	C	C	T			TARGET-10-PARPNM-04A-01D	TARGET-10-PARPNM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPNM-04A-01D	TARGET-10-PARPNM-10A-01D	L1423L	NM_058004	14	149	0	109	35	418	3	395
PTPN11	5781	hgsc.bcm.edu	hg19	12	112888211	112888211	+	Missense_Mutation	SNP	A	A	C			TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	E76A	NM_002834	15	153	0	198	43	470	0	874
ARHGEF28	64283	hgsc.bcm.edu	hg19	5	73045752	73045752	+	Nonsense_Mutation	SNP	C	C	T			TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	R42*	NM_001080479	17	229	1	342	35	466	0	761
SLC22A24	283238	hgsc.bcm.edu	hg19	11	62863539	62863539	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	R332*	NM_001136506	55	111	0	163	266	537	2	776
SLC22A24	283238	hgsc.bcm.edu	hg19	11	62863539	62863539	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PARPNM-04A-01D	TARGET-10-PARPNM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPNM-04A-01D	TARGET-10-PARPNM-10A-01D	R332*	NM_001136506	14	160	0	163	44	519	2	776
SPTY2D1	144108	hgsc.bcm.edu	hg19	11	18637177	18637177	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	K215R	NM_194285	16	248	0	343	46	484	0	1017
TRPC4AP	26133	hgsc.bcm.edu	hg19	20	33637696	33637696	+	Silent	SNP	G	G	A			TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	L210L	NM_015638	11	215	0	281	13	477	0	1015
WDR13	64743	hgsc.bcm.edu	hg19	X	48458079	48458079	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	V166A	NM_017883	6	51	0	61	50	454	0	860
ZNF445	353274	hgsc.bcm.edu	hg19	3	44488099	44488099	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPNM-03A-01D	TARGET-10-PARPNM-10A-01D	A1022T	NM_181489	18	219	2	295	37	468	2	708
ABCC2	1244	hgsc.bcm.edu	hg19	10	101556904	101556905	+	Frame_Shift_Ins	INS	-	-	T			TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	-	-	-	T	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	E228fs	NM_000392	9	98	0	78	89	439	0	843
ARHGEF38	54848	hgsc.bcm.edu	hg19	4	106473934	106473934	+	Missense_Mutation	SNP	A	A	T			TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	A	A	A	T	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	K4N	NM_017700	51	118	0	105	216	461	0	671
BORA	79866	hgsc.bcm.edu	hg19	13	73317747	73317748	+	Intron	INS	-	-	GAGT			TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	-	-	-	GAGT	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	A152_E6splice_region	NM_024808	8	163	0	206	14	509	0	1264
DLGAP5	9787	hgsc.bcm.edu	hg19	14	55636161	55636161	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	T502A	NM_014750	70	350	0	425	131	550	0	1030
EIF4A1	1973	hgsc.bcm.edu	hg19	17	7479993	7479993	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	L166P	NM_001416	50	201	0	124	76	398	0	1318
FAM184A	79632	hgsc.bcm.edu	hg19	6	119297190	119297190	+	Silent	SNP	G	G	T			TARGET-10-PARPRW-03A-01D	TARGET-10-PARPRW-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-03A-01D	TARGET-10-PARPRW-10A-01D	L825L	NM_024581	70	200	0	197	672	1519	0	591
FAM184A	79632	hgsc.bcm.edu	hg19	6	119297190	119297190	+	Silent	SNP	G	G	T			TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	L825L	NM_024581	74	165	0	197	220	491	0	591
FAM196A	642938	hgsc.bcm.edu	hg19	10	128973731	128973731	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARPRW-03A-01D	TARGET-10-PARPRW-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-03A-01D	TARGET-10-PARPRW-10A-01D	P310L	NM_001039762	10	30	0	28	435	1077	0	247
FAT3	120114	hgsc.bcm.edu	hg19	11	92590471	92590471	+	Silent	SNP	G	G	A			TARGET-10-PARPRW-03A-01D	TARGET-10-PARPRW-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-03A-01D	TARGET-10-PARPRW-10A-01D	P3819P	NM_001008781	11	161	0	91	48	493	0	532
FCGBP	8857	hgsc.bcm.edu	hg19	19	40392042	40392042	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARPRW-03A-01D	TARGET-10-PARPRW-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-03A-01D	TARGET-10-PARPRW-10A-01D	P2782S	NM_003890	28	103	0	47	107	300	0	430
GRN	2896	hgsc.bcm.edu	hg19	17	42428953	42428953	+	Silent	SNP	C	C	T			TARGET-10-PARPRW-03A-01D	TARGET-10-PARPRW-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-03A-01D	TARGET-10-PARPRW-10A-01D	P323P	NM_002087	37	112	0	64	307	747	0	570
HIGD1C	613227	hgsc.bcm.edu	hg19	12	51354844	51354845	+	Frame_Shift_Del	DEL	GA	GA	-			TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	GA	GA	GA	-	GA	GA	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	R63fs	NM_001109619	15	364	0	338	25	499	0	688
IL12RB2	3595	hgsc.bcm.edu	hg19	1	67796472	67796472	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	R313G	NM_001559	63	246	0	242	96	469	0	771
MID1	4281	hgsc.bcm.edu	hg19	X	10534941	10534941	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PARPRW-03A-01D	TARGET-10-PARPRW-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-03A-01D	TARGET-10-PARPRW-10A-01D	Y216C	NM_033290	54	151	0	109	183	454	0	894
MID1	4281	hgsc.bcm.edu	hg19	X	10534941	10534941	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	Y216C	NM_033290	59	139	0	109	180	387	0	894
NRAS	4893	hgsc.bcm.edu	hg19	1	115258747	115258747	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PARPRW-03A-01D	TARGET-10-PARPRW-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-03A-01D	TARGET-10-PARPRW-10A-01D	G12V	NM_002524	7	393	0	266	42	1245	0	1149
NRAS	4893	hgsc.bcm.edu	hg19	1	115258747	115258747	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARPRW-03A-01D	TARGET-10-PARPRW-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-03A-01D	TARGET-10-PARPRW-10A-01D	G12S	NM_002524	4	393	0	266	26	1245	0	1149
NRAS	4893	hgsc.bcm.edu	hg19	1	115258747	115258747	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	G12V	NM_002524	178	401	0	266	200	444	0	1149
PDK4	5166	hgsc.bcm.edu	hg19	7	95218979	95218979	+	Silent	SNP	G	G	A			TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	L248L	NM_002612	78	279	0	308	114	475	0	594
POM121L2	94026	hgsc.bcm.edu	hg19	6	27279901	27279902	+	In_Frame_Ins	INS	-	-	CCCCTC			TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	-	-	-	CCCCTC	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	EGinsQ17	NM_033482	5	55	0	24	61	480	0	1003
RORA	6095	hgsc.bcm.edu	hg19	15	60789702	60789721	+	Frame_Shift_Del	DEL	CTTGTATAATGGAGGAAAAT	CTTGTATAATGGAGGAAAAT	-			TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	CTTGTATAATGGAGGAAAAT	CTTGTATAATGGAGGAAAAT	CTTGTATAATGGAGGAAAAT	-	CTTGTATAATGGAGGAAAAT	CTTGTATAATGGAGGAAAAT	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	H502_K508fs	NM_134261	24	214	0	295	68	488	0	601
RXFP2	122042	hgsc.bcm.edu	hg19	13	32367115	32367115	+	Missense_Mutation	SNP	A	A	C			TARGET-10-PARPRW-03A-01D	TARGET-10-PARPRW-10A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-03A-01D	TARGET-10-PARPRW-10A-01D	N559T	NM_130806	53	142	0	151	365	841	0	1349
RXFP2	122042	hgsc.bcm.edu	hg19	13	32367115	32367115	+	Missense_Mutation	SNP	A	A	C			TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	N559T	NM_130806	49	103	0	151	189	436	0	1349
STK33	65975	hgsc.bcm.edu	hg19	11	8414093	8414094	+	In_Frame_Ins	INS	-	-	ACCAGA			TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	-	-	-	ACCAGA	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	K503>NLV	NM_030906	8	355	0	388	28	441	0	625
SUPT6H	6830	hgsc.bcm.edu	hg19	17	27002153	27002153	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARPRW-03A-01D	TARGET-10-PARPRW-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-03A-01D	TARGET-10-PARPRW-10A-01D	E171K	NM_003170	36	95	0	70	718	1679	0	1162
SUPT6H	6830	hgsc.bcm.edu	hg19	17	27002153	27002153	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	E171K	NM_003170	31	77	0	70	196	468	0	1162
TCF3	6929	hgsc.bcm.edu	hg19	19	1619152	1619152	+	Frame_Shift_Del	DEL	C	C	-			TARGET-10-PARPRW-03A-01D	TARGET-10-PARPRW-10A-01D	C	C	C	-	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-03A-01D	TARGET-10-PARPRW-10A-01D	G470fs	NM_003200	53	110	0	41	124	352	0	313
TCF3	6929	hgsc.bcm.edu	hg19	19	1619152	1619152	+	Frame_Shift_Del	DEL	C	C	-			TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	C	C	C	-	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	G470fs	NM_003200	28	90	0	41	112	422	0	313
TCF3	6929	hgsc.bcm.edu	hg19	19	1619182	1619182	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARPRW-03A-01D	TARGET-10-PARPRW-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-03A-01D	TARGET-10-PARPRW-10A-01D	H460Y	NM_003200	43	96	0	32	218	490	1	304
TCF3	6929	hgsc.bcm.edu	hg19	19	1619182	1619182	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	H460Y	NM_003200	16	64	0	32	136	328	1	304
TMEM229A	730130	hgsc.bcm.edu	hg19	7	123672238	123672238	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	G274S	NM_001136002	31	114	0	67	66	368	0	463
TRIM24	8805	hgsc.bcm.edu	hg19	7	138223461	138223461	+	Silent	SNP	C	C	G			TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	L352L	NM_003852	31	143	0	141	118	505	0	928
ZMIZ2	83637	hgsc.bcm.edu	hg19	7	44796647	44796647	+	Silent	SNP	G	G	A			TARGET-10-PARPRW-03A-01D	TARGET-10-PARPRW-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-03A-01D	TARGET-10-PARPRW-10A-01D	L89L	NM_031449	31	58	0	39	391	922	3	212
ZMIZ2	83637	hgsc.bcm.edu	hg19	7	44796647	44796647	+	Silent	SNP	G	G	A			TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	L89L	NM_031449	21	52	0	39	182	378	3	212
ZNF257	113835	hgsc.bcm.edu	hg19	19	22271387	22271387	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARPRW-03A-01D	TARGET-10-PARPRW-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-03A-01D	TARGET-10-PARPRW-10A-01D	H279Y	NM_033468	62	174	0	143	975	2583	1	789
ZNF257	113835	hgsc.bcm.edu	hg19	19	22271387	22271387	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	H279Y	NM_033468	55	124	0	143	205	456	1	789
ZP1	22917	hgsc.bcm.edu	hg19	11	60640880	60640881	+	Frame_Shift_Ins	INS	-	-	AAGAGAA			TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	-	-	-	AAGAGAA	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PARPRW-04A-01D	TARGET-10-PARPRW-10A-01D	D425fs	NM_207341	7	90	0	66	89	423	0	286
ACACA	31	hgsc.bcm.edu	hg19	17	35614702	35614703	+	Frame_Shift_Ins	INS	-	-	C			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	C	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	A583fs	NM_198834	65	377	0	415	166	718	0	1265
ACTR8	93973	hgsc.bcm.edu	hg19	3	53912438	53912438	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	I117M	NM_022899	94	1002	2	1176	86	713	0	1328
AHNAK2	113146	hgsc.bcm.edu	hg19	14	105416562	105416563	+	Frame_Shift_Ins	INS	-	-	T			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	T	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	P1742fs	NM_138420	21	68	0	52	126	417	0	99
BRF1	2972	hgsc.bcm.edu	hg19	14	105692611	105692612	+	Frame_Shift_Ins	INS	-	-	T			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	T	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	S107fs	NM_145685	122	342	0	380	216	675	0	125
CACNA1G	8913	hgsc.bcm.edu	hg19	17	48695603	48695604	+	Frame_Shift_Ins	INS	-	-	C			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	C	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	C1776fs	NM_018896	44	132	0	141	213	668	0	472
CBS	875	hgsc.bcm.edu	hg19	21	44492099	44492100	+	Frame_Shift_Ins	INS	-	-	G			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	G	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	A69fs	NM_000071	15	137	0	72	66	600	0	276
CDK6	1021	hgsc.bcm.edu	hg19	7	92244490	92244490	+	Silent	SNP	C	C	A			TARGET-10-PASFXA-03A-01D	TARGET-10-PASFXA-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-03A-01D	TARGET-10-PASFXA-10A-01D	P315P	NM_001145306	70	168	0	169	369	868	3	2852
CDK6	1021	hgsc.bcm.edu	hg19	7	92244490	92244490	+	Silent	SNP	C	C	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	P315P	NM_001145306	126	280	0	169	1518	3265	3	2852
CDKL5	6792	hgsc.bcm.edu	hg19	X	18646513	18646513	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	R840H	NM_003159	146	579	1	518	166	631	0	788
CENPC	1060	hgsc.bcm.edu	hg19	4	68378236	68378236	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	R499H	NM_001812	32	454	0	484	75	630	1	549
CENPV	201161	hgsc.bcm.edu	hg19	17	16251981	16251982	+	Frame_Shift_Ins	INS	-	-	T			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	T	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	K176fs	NM_181716	43	133	0	85	190	647	0	752
CNTRL	11064	hgsc.bcm.edu	hg19	9	123910979	123910980	+	Frame_Shift_Ins	INS	-	-	AA			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	AA	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	K1163fs	NM_007018	4	213	0	123	16	978	0	2301
CEP76	79959	hgsc.bcm.edu	hg19	18	12678451	12678452	+	Intron	INS	-	-	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	A	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	R430_E10splice_region	NM_024899	14	60	0	86	143	709	2	609
CHGA	1113	hgsc.bcm.edu	hg19	14	93397917	93397918	+	Frame_Shift_Ins	INS	-	-	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	A	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	K226fs	NM_001275	7	49	0	30	111	466	0	197
CNTN1	1272	hgsc.bcm.edu	hg19	12	41312475	41312475	+	Frame_Shift_Del	DEL	T	T	-			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	T	T	T	-	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	F43fs	NM_001843	10	201	0	268	13	471	0	927
COL18A1	80781	hgsc.bcm.edu	hg19	21	46902726	46902727	+	Frame_Shift_Ins	INS	-	-	C			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	C	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	P564fs	NM_130445	146	360	0	252	178	564	0	624
COPS2	9318	hgsc.bcm.edu	hg19	15	49420184	49420184	+	Missense_Mutation	SNP	T	T	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	T	T	T	A	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	N432I	NM_004236	131	536	0	467	140	620	0	914
CREB1	1385	hgsc.bcm.edu	hg19	2	208420380	208420380	+	Silent	SNP	C	C	T			TARGET-10-PASFXA-03A-01D	TARGET-10-PASFXA-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-03A-01D	TARGET-10-PASFXA-10A-01D	A7A	NM_134442	48	93	0	101	355	716	0	1147
CREB1	1385	hgsc.bcm.edu	hg19	2	208420380	208420380	+	Silent	SNP	C	C	T			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	A7A	NM_134442	45	107	0	101	557	1175	0	1147
CREBBP	1387	hgsc.bcm.edu	hg19	16	3801783	3801783	+	Silent	SNP	G	G	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	F1241F	NM_004380	40	406	0	296	63	586	0	1133
CYP19A1	1588	hgsc.bcm.edu	hg19	15	51507944	51507944	+	Missense_Mutation	SNP	G	G	T			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	L272M	NM_031226	81	796	0	809	87	703	2	2258
CYP19A1	1588	hgsc.bcm.edu	hg19	15	51507958	51507958	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	S267F	NM_031226	78	799	0	823	84	712	0	2298
DLGAP3	58512	hgsc.bcm.edu	hg19	1	35370695	35370696	+	Frame_Shift_Ins	INS	-	-	G			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	G	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	G97fs	NM_001080418	7	25	0	15	127	467	0	2169
DNAJC7	7266	hgsc.bcm.edu	hg19	17	40140760	40140760	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASFXA-03A-01D	TARGET-10-PASFXA-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-03A-01D	TARGET-10-PASFXA-10A-01D	V303A	NM_003315	178	468	0	522	326	800	0	1040
DNAJC7	7266	hgsc.bcm.edu	hg19	17	40140760	40140760	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	V303A	NM_003315	169	402	0	522	290	690	0	1040
DPY19L3	147991	hgsc.bcm.edu	hg19	19	32899217	32899218	+	Frame_Shift_Ins	INS	-	-	T			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	T	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	P20fs	NM_207325	75	285	0	342	177	711	0	884
DUS2	54920	hgsc.bcm.edu	hg19	16	68112825	68112826	+	Frame_Shift_Ins	INS	-	-	G			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	G	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	D473fs	NM_017803	11	86	0	47	85	561	0	357
FAM186A	121006	hgsc.bcm.edu	hg19	12	50748689	50748689	+	Silent	SNP	T	T	C			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	S642S	NM_001145475	9	74	0	108	26	499	1	1412
FAM186A	121006	hgsc.bcm.edu	hg19	12	50749939	50749939	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	D226Y	NM_001145475	57	280	0	459	111	563	0	1358
FCGBP	8857	hgsc.bcm.edu	hg19	19	40423986	40423987	+	Frame_Shift_Ins	INS	-	-	T			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	T	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	A739fs	NM_003890	9	40	0	46	125	565	0	479
FGGY	55277	hgsc.bcm.edu	hg19	1	60103953	60103953	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	A376V	NM_018291	186	514	1	489	299	737	0	1293
GBP6	163351	hgsc.bcm.edu	hg19	1	89847359	89847359	+	Silent	SNP	C	C	T			TARGET-10-PASFXA-03A-01D	TARGET-10-PASFXA-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-03A-01D	TARGET-10-PASFXA-10A-01D	A326A	NM_198460	31	85	0	71	102	247	3	2013
GBP6	163351	hgsc.bcm.edu	hg19	1	89847359	89847359	+	Silent	SNP	C	C	T			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	A326A	NM_198460	51	114	0	71	973	2298	3	2013
HRNR	388697	hgsc.bcm.edu	hg19	1	152188253	152188253	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	R1951H	NM_001009931	15	180	0	110	37	351	0	135
HRNR	388697	hgsc.bcm.edu	hg19	1	152192954	152192954	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	A384V	NM_001009931	60	173	0	101	231	580	0	297
HSD3B1	3283	hgsc.bcm.edu	hg19	1	120056677	120056677	+	Silent	SNP	C	C	T			TARGET-10-PASFXA-03A-01D	TARGET-10-PASFXA-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-03A-01D	TARGET-10-PASFXA-10A-01D	G177G	NM_000862	17	36	0	32	111	262	10	2051
HSD3B1	3283	hgsc.bcm.edu	hg19	1	120056677	120056677	+	Silent	SNP	C	C	T			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	G177G	NM_000862	21	43	0	32	1128	2401	10	2051
JTB	10899	hgsc.bcm.edu	hg19	1	153947068	153947068	+	3'UTR	SNP	A	A	C			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	E5_UTR_3	NM_006694	13	38	0	47	275	676	0	738
KRTAP26-1	388818	hgsc.bcm.edu	hg19	21	31692363	31692364	+	5'UTR	INS	-	-	T			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	T	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	E1_UTR_5	NM_203405	22	102	0	79	118	518	0	970
APOOP5	644649	hgsc.bcm.edu	hg19	16	59788855	59788855	+	RNA	SNP	G	G	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	E1_exon	NR_028471	10	65	0	57	24	276	1	474
LPHN1	22859	hgsc.bcm.edu	hg19	19	14288478	14288479	+	Frame_Shift_Ins	INS	-	-	G			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	G	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	C50fs	NM_014921	11	37	0	20	175	539	0	966
MARCH6	10299	hgsc.bcm.edu	hg19	5	10415741	10415741	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	R703H	NM_005885	74	630	1	515	76	623	0	1138
KMT2B	9757	hgsc.bcm.edu	hg19	12	49432691	49432691	+	Silent	SNP	T	T	C			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	Q2816Q	NM_003482	9	64	0	56	81	487	0	383
MRPL55	128308	hgsc.bcm.edu	hg19	1	228295434	228295435	+	Frame_Shift_Ins	INS	-	-	C			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	C	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	L55fs	NM_181463	10	49	0	22	142	573	0	165
MYH4	4622	hgsc.bcm.edu	hg19	17	10354776	10354777	+	Intron	INS	-	-	G			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	G	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	K1246_E28splice_region	NM_017533	9	293	0	433	18	519	0	920
MYO18A	399687	hgsc.bcm.edu	hg19	17	27437001	27437001	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	S1069N	NM_078471	11	38	0	18	180	500	2	632
MYO18A	399687	hgsc.bcm.edu	hg19	17	27446360	27446360	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	T608A	NM_078471	51	112	0	67	286	720	0	553
MYOM2	9172	hgsc.bcm.edu	hg19	8	2048844	2048845	+	Frame_Shift_Ins	INS	-	-	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	A	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	K873fs	NM_003970	33	58	0	90	184	281	0	295
NCBP1	4686	hgsc.bcm.edu	hg19	9	100431206	100431207	+	Frame_Shift_Ins	INS	-	-	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	A	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	V699fs	NM_002486	28	389	0	283	60	940	0	1460
NIPBL	25836	hgsc.bcm.edu	hg19	5	37064906	37064907	+	Frame_Shift_Ins	INS	-	-	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	A	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	I2776fs	NM_133433	47	117	0	106	202	648	0	1087
NOL4	8715	hgsc.bcm.edu	hg19	18	31709872	31709872	+	Missense_Mutation	SNP	A	A	T			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	A	A	A	T	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	I126N	NM_003787	17	543	0	519	37	658	1	1667
NPNT	255743	hgsc.bcm.edu	hg19	4	106861747	106861748	+	Frame_Shift_Ins	INS	-	-	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	A	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	K239fs	NM_001033047	119	357	0	281	220	659	0	1395
NRXN1	9378	hgsc.bcm.edu	hg19	2	50724565	50724566	+	Frame_Shift_Ins	INS	-	-	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	A	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	L969fs	NM_001135659	27	217	0	233	78	681	0	1659
NSL1	25936	hgsc.bcm.edu	hg19	1	212957772	212957772	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	R126H	NM_015471	117	515	0	727	194	668	0	1199
NT5C1B	93034	hgsc.bcm.edu	hg19	2	18768300	18768300	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	C87Y	NM_001002006	16	86	0	56	158	552	1	1086
OR5M11	219487	hgsc.bcm.edu	hg19	11	56310568	56310568	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASFXA-03A-01D	TARGET-10-PASFXA-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-03A-01D	TARGET-10-PASFXA-10A-01D	H56Y	NM_001005245	67	146	0	129	165	404	1	2023
OR5M11	219487	hgsc.bcm.edu	hg19	11	56310568	56310568	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	H56Y	NM_001005245	77	169	0	129	924	2130	1	2023
PAK1	5058	hgsc.bcm.edu	hg19	11	77043876	77043877	+	Frame_Shift_Ins	INS	-	-	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	A	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	L484fs	NM_002576	105	321	0	331	198	635	0	357
PARP8	79668	hgsc.bcm.edu	hg19	5	50073946	50073946	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	D188N	NM_024615	24	458	1	716	77	676	0	1659
PAX9	5083	hgsc.bcm.edu	hg19	14	37135797	37135798	+	Frame_Shift_Ins	INS	-	-	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	A	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	K254fs	NM_006194	7	24	0	12	127	530	0	605
PTCD3	55037	hgsc.bcm.edu	hg19	2	86358222	86358222	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	M420T	NM_017952	53	473	1	608	78	674	1	1562
SLC24A5	283652	hgsc.bcm.edu	hg19	15	48429073	48429074	+	Frame_Shift_Ins	INS	-	-	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	A	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	S262fs	NM_205850	44	172	1	139	152	651	0	1046
SLC44A2	57153	hgsc.bcm.edu	hg19	19	10746159	10746160	+	Frame_Shift_Ins	INS	-	-	C			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	C	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	C399fs	NM_001145056	31	239	0	196	63	658	0	579
SLC9A1	6548	hgsc.bcm.edu	hg19	1	27427709	27427710	+	Frame_Shift_Ins	INS	-	-	G			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	G	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	A699fs	NM_003047	42	107	0	36	174	543	0	204
SLC9A2	6549	hgsc.bcm.edu	hg19	2	103274261	103274261	+	Silent	SNP	G	G	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	G176G	NM_003048	54	474	0	341	88	660	0	611
SLC9A2	6549	hgsc.bcm.edu	hg19	2	103318894	103318894	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	V593A	NM_003048	36	165	1	185	163	643	1	1854
SLCO2B1	11309	hgsc.bcm.edu	hg19	11	74876996	74876996	+	Splice_Site	SNP	T	T	C			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	E150_E4splice	NM_007256	13	94	0	60	62	531	0	674
MIEF1	54471	hgsc.bcm.edu	hg19	22	39909777	39909778	+	Frame_Shift_Ins	INS	-	-	G			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	G	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	S281fs	NM_019008	14	42	0	32	197	559	0	579
SPATC1	375686	hgsc.bcm.edu	hg19	8	145095869	145095870	+	Frame_Shift_Ins	INS	-	-	C			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	C	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	P389fs	NM_198572	5	31	0	23	125	582	0	126
SPG11	80208	hgsc.bcm.edu	hg19	15	44867142	44867143	+	Frame_Shift_Ins	INS	-	-	T			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	T	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	K1988fs	NM_025137	27	252	0	202	66	602	0	594
STEAP4	79689	hgsc.bcm.edu	hg19	7	87912106	87912107	+	Frame_Shift_Ins	INS	-	-	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	A	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	R278fs	NM_024636	31	139	0	81	149	594	0	741
STK10	6793	hgsc.bcm.edu	hg19	5	171491789	171491789	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	R673*	NM_005990	101	420	0	269	156	577	0	1214
TAF3	83860	hgsc.bcm.edu	hg19	10	8006782	8006782	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	S437P	NM_031923	16	73	0	54	100	615	0	1067
TAF3	83860	hgsc.bcm.edu	hg19	10	8006791	8006791	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	A440T	NM_031923	8	72	0	53	58	607	0	1035
TFAP2A	7020	hgsc.bcm.edu	hg19	6	10404808	10404809	+	Frame_Shift_Ins	INS	-	-	T			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	T	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	E227fs	NM_001032280	20	55	0	35	87	278	0	292
TMEM14C	51522	hgsc.bcm.edu	hg19	6	10728915	10728915	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	Y81C	NM_001165258	14	507	0	577	15	713	0	597
TMX2	51075	hgsc.bcm.edu	hg19	11	57505874	57505874	+	Missense_Mutation	SNP	T	T	G			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	I138S	NM_015959	216	696	0	702	184	665	0	901
TP53	7157	hgsc.bcm.edu	hg19	17	7577538	7577538	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASFXA-03A-01D	TARGET-10-PASFXA-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-03A-01D	TARGET-10-PASFXA-10A-01D	R248Q	NM_000546	88	91	0	116	538	596	1	1623
TP53	7157	hgsc.bcm.edu	hg19	17	7577538	7577538	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	R248Q	NM_000546	117	146	0	116	367	434	1	1623
TPRN	286262	hgsc.bcm.edu	hg19	9	140087053	140087054	+	In_Frame_Ins	INS	-	-	CCT			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	CCT	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	RinsQ606	NM_001128228	19	178	0	107	136	940	1	148
TRAPPC8	22878	hgsc.bcm.edu	hg19	18	29426789	29426790	+	Intron	INS	-	-	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	A	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	K1245_E26splice_region	NM_014939	10	244	0	280	8	670	0	1096
TREM1	54210	hgsc.bcm.edu	hg19	6	41250271	41250271	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	Y90H	NM_018643	12	209	1	160	19	372	0	730
TRIM24	8805	hgsc.bcm.edu	hg19	7	138199980	138199981	+	Frame_Shift_Ins	INS	-	-	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	A	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	N169fs	NM_003852	27	219	1	187	69	651	0	1331
TSHZ3	57616	hgsc.bcm.edu	hg19	19	31769149	31769150	+	Frame_Shift_Ins	INS	-	-	C			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	C	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	K517fs	NM_020856	27	184	0	161	78	557	12	877
UBAC1	10422	hgsc.bcm.edu	hg19	9	138839752	138839753	+	RNA	INS	-	-	T			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	T	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	K111_E4exon	NM_016172	63	530	0	330	64	940	0	372
USP6	9098	hgsc.bcm.edu	hg19	17	5071286	5071287	+	Frame_Shift_Ins	INS	-	-	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	A	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	N1032fs	NM_004505	20	118	0	109	72	476	0	773
VCAN	1462	hgsc.bcm.edu	hg19	5	82850806	82850807	+	Frame_Shift_Ins	INS	-	-	T			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	T	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	L3228fs	NM_004385	146	599	0	509	125	633	0	1360
WAC	51322	hgsc.bcm.edu	hg19	10	28905194	28905195	+	Frame_Shift_Ins	INS	-	-	C			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	C	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	R447fs	NM_100486	43	212	0	217	151	687	0	903
ZAN	7455	hgsc.bcm.edu	hg19	7	100369542	100369542	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	T1775N	NM_003386	45	98	0	79	260	634	0	460
ZBTB46	140685	hgsc.bcm.edu	hg19	20	62384095	62384095	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASFXA-03A-01D	TARGET-10-PASFXA-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-03A-01D	TARGET-10-PASFXA-10A-01D	C448R	NM_025224	11	26	0	45	251	539	6	1551
ZBTB46	140685	hgsc.bcm.edu	hg19	20	62384095	62384095	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	C448R	NM_025224	38	88	0	45	1201	2860	6	1551
ZEB1	6935	hgsc.bcm.edu	hg19	10	31791273	31791273	+	Splice_Site	DEL	T	T	-			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	T	T	T	-	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	V107_E4splice	NM_030751	48	203	0	221	155	833	8	888
ZFYVE27	118813	hgsc.bcm.edu	hg19	10	99510232	99510233	+	Intron	INS	-	-	A			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	A	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	D269_E7splice_region	NM_144588	16	34	0	27	203	595	0	658
ZNF609	23060	hgsc.bcm.edu	hg19	15	64973573	64973573	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	R1410G	NM_015042	24	121	0	134	167	703	3	1520
ZNF609	23060	hgsc.bcm.edu	hg19	15	64973576	64973577	+	Frame_Shift_Ins	INS	-	-	G			TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	-	-	-	G	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASFXA-04A-01D	TARGET-10-PASFXA-10A-01D	R1411fs	NM_015042	26	122	2	130	153	709	0	1499
CCDC43	124808	hgsc.bcm.edu	hg19	17	42767046	42767046	+	Missense_Mutation	SNP	G	G	T			TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	L26M	NM_001099225	11	18	0	24	286	680	1	513
CERCAM	51148	hgsc.bcm.edu	hg19	9	131193497	131193497	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	P373Q	NM_016174	22	52	0	23	328	715	0	468
EGFLAM	133584	hgsc.bcm.edu	hg19	5	38435283	38435283	+	Silent	SNP	C	C	T			TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	G737G	NM_152403	94	176	0	115	451	927	2	972
GGT1	2678	hgsc.bcm.edu	hg19	22	25016911	25016911	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASKAY-03A-01D	TARGET-10-PASKAY-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASKAY-03A-01D	TARGET-10-PASKAY-10A-01D	R203W	NM_005265	10	37	0	18	50	675	0	1333
ITSN1	6453	hgsc.bcm.edu	hg19	21	35183518	35183518	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PASKAY-03A-01D	TARGET-10-PASKAY-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASKAY-03A-01D	TARGET-10-PASKAY-10A-01D	F853L	NM_003024	43	114	0	50	287	774	1	635
ITSN1	6453	hgsc.bcm.edu	hg19	21	35183518	35183518	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	F853L	NM_003024	22	56	0	50	293	692	1	635
EMC1	23065	hgsc.bcm.edu	hg19	1	19566340	19566340	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASKAY-03A-01D	TARGET-10-PASKAY-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASKAY-03A-01D	TARGET-10-PASKAY-10A-01D	T309M	NM_015047	23	238	0	78	82	822	1	895
EMC1	23065	hgsc.bcm.edu	hg19	1	19566340	19566340	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	T309M	NM_015047	64	138	0	78	397	849	1	895
MIER1	57708	hgsc.bcm.edu	hg19	1	67394616	67394617	+	Frame_Shift_Ins	INS	-	-	CCGCGGGG			TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	-	-	-	CCGCGGGG	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	C10fs	NM_020948	7	523	0	222	15	976	0	773
NCAM2	4685	hgsc.bcm.edu	hg19	21	22849731	22849731	+	Missense_Mutation	SNP	G	G	T			TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	L672F	NM_004540	43	176	0	155	211	846	0	767
NMUR1	10316	hgsc.bcm.edu	hg19	2	232393487	232393487	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	C82F	NM_006056	5	21	0	12	201	709	0	770
NT5C2	22978	hgsc.bcm.edu	hg19	10	104852955	104852955	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	R367Q	NM_012229	91	214	0	108	411	909	1	643
OR2A25	392138	hgsc.bcm.edu	hg19	7	143771878	143771878	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	A189V	NM_001004488	74	170	0	224	285	695	4	956
PGK2	5232	hgsc.bcm.edu	hg19	6	49754268	49754268	+	Silent	SNP	T	T	G			TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	I211I	NM_138733	10	113	0	108	108	826	0	1037
RAD21	5885	hgsc.bcm.edu	hg19	8	117870642	117870642	+	Missense_Mutation	SNP	T	T	G			TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	T144P	NM_006265	73	482	0	238	99	905	0	825
RASGRF2	5924	hgsc.bcm.edu	hg19	5	80409697	80409697	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASKAY-03A-01D	TARGET-10-PASKAY-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASKAY-03A-01D	TARGET-10-PASKAY-10A-01D	R810C	NM_006909	6	94	0	29	77	921	0	1280
RASGRF2	5924	hgsc.bcm.edu	hg19	5	80409697	80409697	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	R810C	NM_006909	18	67	0	29	405	959	0	1280
SCIN	85477	hgsc.bcm.edu	hg19	7	12662506	12662506	+	Silent	SNP	T	T	G			TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	A2A	NM_033128	13	152	0	105	43	802	0	908
SLC29A4	222962	hgsc.bcm.edu	hg19	7	5330768	5330768	+	Silent	SNP	G	G	A			TARGET-10-PASKAY-03A-01D	TARGET-10-PASKAY-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASKAY-03A-01D	TARGET-10-PASKAY-10A-01D	V105V	NM_001040661	7	151	0	28	37	825	0	296
SLC29A4	222962	hgsc.bcm.edu	hg19	7	5330768	5330768	+	Silent	SNP	G	G	A			TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	V105V	NM_001040661	23	45	0	28	347	744	0	296
ZNF883	169834	hgsc.bcm.edu	hg19	9	115759908	115759908	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PASKAY-03A-01D	TARGET-10-PASKAY-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASKAY-03A-01D	TARGET-10-PASKAY-10A-01D	C211F	NM_001101338	16	207	0	88	53	844	0	867
ZNF883	169834	hgsc.bcm.edu	hg19	9	115759908	115759908	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASKAY-04A-01D	TARGET-10-PASKAY-10A-01D	C211F	NM_001101338	72	148	0	88	380	852	0	867
A1CF	29974	hgsc.bcm.edu	hg19	10	52596065	52596065	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R133C	NM_138933	42	178	0	173	169	663	4	1830
AASS	10157	hgsc.bcm.edu	hg19	7	121741722	121741722	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A431T	NM_005763	82	442	1	229	180	1020	0	1098
ABCA2	20	hgsc.bcm.edu	hg19	9	139916374	139916374	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R246H	NM_212533	42	166	0	126	165	588	0	43
ACAD9	28976	hgsc.bcm.edu	hg19	3	128624970	128624970	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S386G	NM_014049	26	127	0	72	171	668	0	304
ACADL	33	hgsc.bcm.edu	hg19	2	211057611	211057611	+	Silent	SNP	T	T	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A372A	NM_001608	43	187	0	200	179	738	0	905
ACLY	47	hgsc.bcm.edu	hg19	17	40057949	40057949	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G395R	NM_001096	44	172	0	105	157	605	0	737
ACSS2	55902	hgsc.bcm.edu	hg19	20	33508905	33508905	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R414C	NM_018677	41	202	0	137	114	639	0	1902
ACTL7A	10881	hgsc.bcm.edu	hg19	9	111625208	111625208	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S202S	NM_006687	23	106	0	79	157	620	0	507
ADAMTS14	140766	hgsc.bcm.edu	hg19	10	72513588	72513588	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R924Q	NM_139155	7	25	0	19	97	625	0	395
ADAMTS5	11096	hgsc.bcm.edu	hg19	21	28306867	28306867	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A536V	NM_007038	53	199	0	195	179	688	4	790
ADAMTS6	11174	hgsc.bcm.edu	hg19	5	64569235	64569235	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R518C	NM_197941	105	383	0	266	190	676	0	470
ADCY2	108	hgsc.bcm.edu	hg19	5	7695919	7695919	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	P308P	NM_020546	125	453	0	358	167	681	2	639
ADD3	120	hgsc.bcm.edu	hg19	10	111884031	111884031	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T467M	NM_016824	8	55	0	50	124	712	3	851
AFAP1L2	84632	hgsc.bcm.edu	hg19	10	116061103	116061103	+	Intron	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A514_E13splice_region	NM_032550	24	123	0	121	163	656	0	305
AGBL3	340351	hgsc.bcm.edu	hg19	7	134678388	134678388	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	P90Q	NM_178563	60	562	0	341	110	1089	0	1545
AKAP17A	8227	hgsc.bcm.edu	hg19	X	1719988	1719988	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R530H	NM_005088	14	71	0	39	144	567	0	406
ALDH1L1	10840	hgsc.bcm.edu	hg19	3	125876285	125876285	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T143T	NM_012190	22	113	0	118	112	643	2	552
ANAPC11	51529	hgsc.bcm.edu	hg19	17	79852384	79852384	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	V11M	NM_001002249	44	183	0	110	198	758	1	160
ANXA2	302	hgsc.bcm.edu	hg19	15	60639819	60639819	+	3'UTR	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E13_UTR_3	NM_001136015	46	146	0	125	150	645	0	153
APBA1	320	hgsc.bcm.edu	hg19	9	72082777	72082777	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R482C	NM_001163	11	171	0	116	35	682	2	538
ARAP1	116985	hgsc.bcm.edu	hg19	11	72404419	72404419	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R1302H	NM_001040118	22	105	0	70	158	609	1	1373
ARHGAP30	257106	hgsc.bcm.edu	hg19	1	161018053	161018053	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	V709M	NM_181720	25	59	0	33	142	533	1	538
ARHGAP33	115703	hgsc.bcm.edu	hg19	19	36275204	36275204	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G518S	NM_052948	57	365	0	243	98	630	2	1587
ARHGEF17	9828	hgsc.bcm.edu	hg19	11	73076613	73076613	+	Intron	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G1909_E19splice_region	NM_014786	10	104	0	89	105	657	0	157
ARIH2	10425	hgsc.bcm.edu	hg19	3	49020392	49020392	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A464T	NM_006321	39	258	0	134	106	684	0	380
ATF7IP	55729	hgsc.bcm.edu	hg19	12	14591145	14591145	+	Nonsense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R625*	NM_018179	123	471	0	456	165	685	1	2056
ATG16L1	55054	hgsc.bcm.edu	hg19	2	234173696	234173696	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T183N	NM_017974	43	183	0	161	169	701	0	609
ATP10A	57194	hgsc.bcm.edu	hg19	15	25953427	25953428	+	Frame_Shift_Ins	INS	-	-	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	-	-	-	T	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	Q789fs	NM_024490	15	225	0	212	68	636	2	360
ATP11A	23250	hgsc.bcm.edu	hg19	13	113481063	113481063	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	I360T	NM_032189	57	207	0	128	200	697	0	518
ATP11C	286410	hgsc.bcm.edu	hg19	X	138878574	138878574	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	I358T	NM_173694	42	260	0	238	102	694	0	991
ATXN2L	11273	hgsc.bcm.edu	hg19	16	28847775	28847775	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S1090G	NM_148414	40	144	1	120	136	579	0	816
BAHCC1	57597	hgsc.bcm.edu	hg19	17	79425922	79425922	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S1844S	NM_001080519	7	20	0	22	180	634	0	76
BAIAP2L1	55971	hgsc.bcm.edu	hg19	7	97939854	97939854	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	P286P	NM_018842	98	588	0	319	158	898	0	547
BAZ1B	9031	hgsc.bcm.edu	hg19	7	72892651	72892651	+	Silent	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T380T	NM_032408	78	595	2	329	100	1064	0	923
BCL2A1	597	hgsc.bcm.edu	hg19	15	80263050	80263050	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G138R	NM_004049	92	378	0	333	151	671	1	996
BIN1	274	hgsc.bcm.edu	hg19	2	127806075	127806075	+	3'UTR	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E15_UTR_3	NM_004305	11	61	0	44	158	673	0	246
BOC	91653	hgsc.bcm.edu	hg19	3	113004366	113004366	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	P1037P	NM_033254	7	46	0	39	147	559	1	566
BPIFC	254240	hgsc.bcm.edu	hg19	22	32810299	32810299	+	Silent	SNP	T	T	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S505S	NM_174932	22	117	0	131	168	695	1	586
BRPF3	27154	hgsc.bcm.edu	hg19	6	36168830	36168830	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	Y244C	NM_015695	52	178	0	100	172	665	0	679
CCDC186	55088	hgsc.bcm.edu	hg19	10	115904277	115904277	+	Silent	SNP	T	T	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	K400K	NM_018017	27	992	0	938	15	734	1	861
TBATA	219793	hgsc.bcm.edu	hg19	10	72537001	72537001	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G200S	NM_152710	27	95	0	63	162	667	0	793
C11orf40	143501	hgsc.bcm.edu	hg19	11	4593410	4593410	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T141T	NM_144663	72	278	0	250	163	643	1	576
HECTD4	283450	hgsc.bcm.edu	hg19	12	112673379	112673379	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E1713G	NM_001109662	34	121	0	86	175	669	0	476
C16orf62	57020	hgsc.bcm.edu	hg19	16	19640017	19640017	+	Missense_Mutation	SNP	A	A	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	T	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	D570V	NM_020314	19	298	0	262	39	669	0	726
C1orf111	284680	hgsc.bcm.edu	hg19	1	162346595	162346595	+	5'UTR	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E1_UTR_5	NM_182581	27	128	0	76	150	614	1	583
C1orf159	54991	hgsc.bcm.edu	hg19	1	1022953	1022954	+	Frame_Shift_Ins	INS	-	-	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	-	-	-	C	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	D58fs	NM_017891	6	20	0	18	87	645	0	124
C3orf20	84077	hgsc.bcm.edu	hg19	3	14724408	14724408	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	P63L	NM_032137	32	245	0	171	97	657	1	736
NDNF	79625	hgsc.bcm.edu	hg19	4	121958294	121958294	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R278C	NM_024574	18	267	1	229	17	657	0	576
C9orf156	51531	hgsc.bcm.edu	hg19	9	100672512	100672512	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	V266M	NM_016481	54	219	0	208	166	696	1	635
C9orf89	84270	hgsc.bcm.edu	hg19	9	95872971	95872972	+	Frame_Shift_Ins	INS	-	-	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	-	-	-	A	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	L91fs	NM_032310	11	152	0	59	13	497	0	218
CA11	770	hgsc.bcm.edu	hg19	19	49142190	49142190	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R306W	NM_001217	7	23	0	16	144	525	0	598
CAD	790	hgsc.bcm.edu	hg19	2	27445478	27445478	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R196H	NM_004341	14	102	0	82	119	695	0	494
CATSPER1	117144	hgsc.bcm.edu	hg19	11	65790327	65790327	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	I474I	NM_053054	13	61	0	52	100	662	1	380
CCDC105	126402	hgsc.bcm.edu	hg19	19	15132169	15132169	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C293C	NM_173482	15	48	0	33	146	624	1	945
CCDC109B	55013	hgsc.bcm.edu	hg19	4	110580227	110580227	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	V54M	NM_017918	87	672	3	657	103	727	1	649
CCDC132	55610	hgsc.bcm.edu	hg19	7	92905528	92905528	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	V285M	NM_024553	161	940	1	572	205	1065	0	655
CCDC88B	283234	hgsc.bcm.edu	hg19	11	64111274	64111274	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S448L	NM_032251	46	152	0	87	150	581	0	257
CDCP1	64866	hgsc.bcm.edu	hg19	3	45153719	45153719	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	V171M	NM_178181	28	165	0	117	94	614	0	639
CDH18	1016	hgsc.bcm.edu	hg19	5	19473645	19473645	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R688Q	NM_004934	99	311	2	285	175	633	1	1005
CDH6	1004	hgsc.bcm.edu	hg19	5	31323163	31323163	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R707R	NM_004932	22	104	0	79	148	555	0	753
CDK2	1017	hgsc.bcm.edu	hg19	12	56365507	56365507	+	3'UTR	SNP	T	T	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E6_UTR_3	NM_052827	8	39	0	36	203	726	0	906
CELSR1	9620	hgsc.bcm.edu	hg19	22	46805752	46805752	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C1653C	NM_014246	23	89	1	88	151	575	0	296
CEP135	9662	hgsc.bcm.edu	hg19	4	56875932	56875932	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R790C	NM_025009	64	249	0	233	195	761	0	631
CEP192	55125	hgsc.bcm.edu	hg19	18	13056442	13056442	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A1285T	NM_032142	10	217	0	156	24	653	0	772
CHIA	27159	hgsc.bcm.edu	hg19	1	111862897	111862897	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G414R	NM_201653	19	83	0	65	172	670	0	843
CHID1	66005	hgsc.bcm.edu	hg19	11	869840	869840	+	3'UTR	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E14_UTR_3	NM_023947	19	82	0	56	97	666	0	97
CHRM4	1132	hgsc.bcm.edu	hg19	11	46407117	46407117	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R331W	NM_000741	25	89	0	82	86	599	0	81
CHRM5	1133	hgsc.bcm.edu	hg19	15	34355334	34355334	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R139Q	NM_012125	18	125	0	126	110	626	0	593
CLASP2	23122	hgsc.bcm.edu	hg19	3	33602354	33602354	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-03A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-03A-01D	TARGET-10-PASLZM-10A-01D	A959V	NM_015097	78	644	1	592	92	755	3	907
CLASP2	23122	hgsc.bcm.edu	hg19	3	33602354	33602354	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A959V	NM_015097	367	789	1	592	346	714	3	907
CNKSR1	10256	hgsc.bcm.edu	hg19	1	26515156	26515156	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R553H	NM_006314	15	88	0	59	173	630	0	377
CNNM4	26504	hgsc.bcm.edu	hg19	2	97427424	97427424	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-03A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-03A-01D	TARGET-10-PASLZM-10A-01D	R230C	NM_020184	15	107	0	119	76	645	0	485
CNNM4	26504	hgsc.bcm.edu	hg19	2	97427424	97427424	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R230C	NM_020184	69	146	0	119	267	591	0	485
CNTN5	53942	hgsc.bcm.edu	hg19	11	100169982	100169983	+	Frame_Shift_Ins	INS	-	-	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	-	-	-	A	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	M825fs	NM_014361	46	168	0	158	145	686	0	868
COL1A2	1278	hgsc.bcm.edu	hg19	7	94054471	94054471	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R906C	NM_000089	135	745	0	401	156	967	1	443
COL4A4	1286	hgsc.bcm.edu	hg19	2	227886829	227886829	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A1384V	NM_000092	22	92	0	52	164	600	0	491
COL4A6	1288	hgsc.bcm.edu	hg19	X	107408103	107408103	+	Intron	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	K1324_E39splice_region	NM_001847	10	74	0	66	160	565	4	706
COL5A2	1290	hgsc.bcm.edu	hg19	2	189963472	189963472	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R128H	NM_000393	96	388	0	428	174	711	1	728
COL6A3	1293	hgsc.bcm.edu	hg19	2	238277444	238277444	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	D1554D	NM_004369	44	89	0	57	293	655	0	1237
CPA6	57094	hgsc.bcm.edu	hg19	8	68421830	68421830	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-03A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-03A-01D	TARGET-10-PASLZM-10A-01D	L152L	NM_020361	36	330	2	307	89	804	15	2327
CPA6	57094	hgsc.bcm.edu	hg19	8	68421830	68421830	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	L152L	NM_020361	115	307	2	307	340	733	15	2327
CPEB4	80315	hgsc.bcm.edu	hg19	5	173316748	173316748	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	Y4Y	NM_030627	13	84	0	82	94	677	3	647
CPT1B	1375	hgsc.bcm.edu	hg19	22	51007739	51007739	+	3'UTR	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	UTR_3	NM_152245	40	137	0	104	166	717	0	234
CREB5	9586	hgsc.bcm.edu	hg19	7	28848928	28848928	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R384Q	NM_182898	7	62	0	73	13	326	1	609
CSMD2	114784	hgsc.bcm.edu	hg19	1	34254293	34254293	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	P484L	NM_052896	73	266	0	153	197	741	2	1202
CSMD3	114788	hgsc.bcm.edu	hg19	8	113259299	113259299	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R3222H	NM_052900	84	343	1	323	180	662	1	1194
CSPG4	1464	hgsc.bcm.edu	hg19	15	75979817	75979817	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	V1197I	NM_001897	7	51	0	40	121	576	0	53
CTBP2	1488	hgsc.bcm.edu	hg19	10	126715432	126715432	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A299A	NM_022802	5	27	0	30	108	628	2	483
CYP27A1	1593	hgsc.bcm.edu	hg19	2	219677819	219677819	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T339T	NM_000784	6	25	0	34	90	545	0	554
CYP2C8	1558	hgsc.bcm.edu	hg19	10	96818129	96818129	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R261Q	NM_000770	181	646	1	538	177	722	0	1196
CYTIP	9595	hgsc.bcm.edu	hg19	2	158272338	158272338	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G311R	NM_004288	39	168	0	186	166	628	1	649
DAB2IP	153090	hgsc.bcm.edu	hg19	9	124329506	124329506	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	Y13Y	NM_032552	16	63	0	36	192	646	2	777
DBN1	1627	hgsc.bcm.edu	hg19	5	176894784	176894785	+	Frame_Shift_Ins	INS	-	-	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	-	-	-	A	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A97fs	NM_004395	9	46	0	41	147	618	0	285
DCHS2	54798	hgsc.bcm.edu	hg19	4	155155875	155155875	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R2855H	NM_017639	32	141	0	131	163	629	1	598
DCP1B	196513	hgsc.bcm.edu	hg19	12	2055225	2055225	+	3'UTR	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E9_UTR_3	NM_152640	16	109	0	111	112	715	0	594
DDX41	51428	hgsc.bcm.edu	hg19	5	176942791	176942791	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S156P	NM_016222	14	277	0	210	24	719	0	152
DDX46	9879	hgsc.bcm.edu	hg19	5	134146979	134146979	+	Missense_Mutation	SNP	A	A	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E739D	NM_014829	71	348	0	285	214	802	0	583
DHRS9	10170	hgsc.bcm.edu	hg19	2	169948327	169948327	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	H200H	NM_005771	52	322	0	258	122	686	0	1513
DNAH6	1768	hgsc.bcm.edu	hg19	2	84880828	84880828	+	Nonsense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R1822*	NM_001370	64	279	0	216	110	653	1	906
DNAH6	1768	hgsc.bcm.edu	hg19	2	84945349	84945349	+	Missense_Mutation	SNP	A	A	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	K3211N	NM_001370	79	570	0	446	118	747	1	1831
DNAH8	1769	hgsc.bcm.edu	hg19	6	38854585	38854585	+	Nonsense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R2543*	NM_001371	64	213	0	199	177	694	1	903
DNAH9	1770	hgsc.bcm.edu	hg19	17	11757692	11757692	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A3294T	NM_001372	13	101	0	65	109	644	1	1268
DPY19L2P4	442523	hgsc.bcm.edu	hg19	7	89753419	89753419	+	RNA	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E3_exon	NR_003551	10	80	0	72	178	1085	1	1008
DRD2	1813	hgsc.bcm.edu	hg19	11	113281313	113281313	+	3'UTR	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E8_UTR_3	NM_000795	4	20	0	23	154	551	0	493
DROSHA	29102	hgsc.bcm.edu	hg19	5	31451711	31451711	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R871C	NM_013235	71	303	0	245	171	674	2	1124
DSCAML1	57453	hgsc.bcm.edu	hg19	11	117321308	117321308	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R1282H	NM_020693	11	56	0	51	89	619	1	1414
DSCR3	10311	hgsc.bcm.edu	hg19	21	38605719	38605719	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R126W	NM_006052	54	270	0	236	192	724	0	394
DSCR4	10281	hgsc.bcm.edu	hg19	21	39426966	39426966	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A114T	NM_005867	156	951	2	691	115	639	0	861
DSG3	1830	hgsc.bcm.edu	hg19	18	29037016	29037016	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R49C	NM_001944	65	344	0	335	193	741	0	1179
DTX2	113878	hgsc.bcm.edu	hg19	7	76111937	76111937	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S127S	NM_020892	11	88	0	39	88	821	0	549
DUOX2	50506	hgsc.bcm.edu	hg19	15	45386458	45386458	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G1513R	NM_014080	32	194	0	138	92	639	1	901
DUSP18	150290	hgsc.bcm.edu	hg19	22	31059756	31059756	+	Missense_Mutation	SNP	G	G	C			TARGET-10-PASLZM-03A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-03A-01D	TARGET-10-PASLZM-10A-01D	L79V	NM_152511	2	312	0	176	8	621	0	905
DUSP18	150290	hgsc.bcm.edu	hg19	22	31059756	31059756	+	Missense_Mutation	SNP	G	G	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	L79V	NM_152511	110	278	0	176	261	577	0	905
EDF1	8721	hgsc.bcm.edu	hg19	9	139757843	139757843	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R63Q	NM_003792	111	515	0	358	174	675	0	101
EHHADH	1962	hgsc.bcm.edu	hg19	3	184935964	184935964	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	D176D	NM_001966	28	643	0	569	35	838	0	986
EIF1AX	1964	hgsc.bcm.edu	hg19	X	20153923	20153923	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R46Q	NM_001412	16	803	0	845	22	702	0	498
EIF4G1	1981	hgsc.bcm.edu	hg19	3	184040965	184040965	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R479Q	NM_004953	58	262	0	240	157	614	0	608
ELN	2006	hgsc.bcm.edu	hg19	7	73456975	73456975	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	P88P	NM_001081753	19	111	0	38	94	954	0	353
EMCN	51705	hgsc.bcm.edu	hg19	4	101337095	101337095	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S237S	NM_016242	10	158	0	145	16	681	4	1234
COL26A1	136227	hgsc.bcm.edu	hg19	7	101190499	101190499	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R305W	NM_133457	7	48	0	21	168	905	0	193
ENPP6	133121	hgsc.bcm.edu	hg19	4	185038055	185038055	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R270H	NM_153343	68	229	0	147	140	592	1	617
ENTPD7	57089	hgsc.bcm.edu	hg19	10	101464475	101464475	+	3'UTR	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E13_UTR_3	NM_020354	13	52	0	59	178	647	1	1016
EPDR1	54749	hgsc.bcm.edu	hg19	7	37989890	37989890	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T309T	NM_017549	18	74	0	144	115	409	1	1396
ERAP2	64167	hgsc.bcm.edu	hg19	5	96231031	96231031	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A403T	NM_022350	106	747	0	565	109	741	4	739
FAM124A	220108	hgsc.bcm.edu	hg19	13	51826086	51826086	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R231W	NM_145019	15	66	0	52	187	690	0	489
FAM135B	51059	hgsc.bcm.edu	hg19	8	139180227	139180227	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	P390L	NM_015912	39	143	0	87	172	609	2	1010
FAM170B	170370	hgsc.bcm.edu	hg19	10	50340222	50340222	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C96C	NM_001164484	7	70	0	41	103	630	0	390
FAM20A	54757	hgsc.bcm.edu	hg19	17	66551763	66551763	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R176W	NM_017565	24	215	0	124	102	724	0	571
FAM46C	54855	hgsc.bcm.edu	hg19	1	118165561	118165561	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R24Q	NM_017709	22	138	0	109	104	594	0	716
FAM71D	161142	hgsc.bcm.edu	hg19	14	67665044	67665044	+	Intron	SNP	C	C	A			TARGET-10-PASLZM-03A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-03A-01D	TARGET-10-PASLZM-10A-01D	V54_E3splice_region	NM_173526	32	288	0	296	104	842	1	1318
FAM71D	161142	hgsc.bcm.edu	hg19	14	67665044	67665044	+	Intron	SNP	C	C	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	V54_E3splice_region	NM_173526	124	329	0	296	363	757	1	1318
FAM73A	374986	hgsc.bcm.edu	hg19	1	78309059	78309059	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	I321I	NM_198549	65	241	0	190	203	687	0	766
FBRS	64319	hgsc.bcm.edu	hg19	16	30676075	30676075	+	5'UTR	SNP	T	T	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E2_UTR_5	NM_001105079	22	102	0	78	164	627	1	485
FBXL18	80028	hgsc.bcm.edu	hg19	7	5541055	5541055	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	L282P	NM_024963	12	47	0	60	102	334	0	368
FBXW4P1	26226	hgsc.bcm.edu	hg19	22	23606319	23606319	+	RNA	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E1_exon	NR_033408	9	45	0	39	100	614	0	400
FGF2	2247	hgsc.bcm.edu	hg19	4	123813399	123813399	+	Nonsense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R239*	NM_002006	139	628	0	577	182	693	1	558
FHL5	9457	hgsc.bcm.edu	hg19	6	97063549	97063549	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C252C	NM_020482	48	301	0	318	111	636	0	637
FLG	2312	hgsc.bcm.edu	hg19	1	152282396	152282396	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-03A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-03A-01D	TARGET-10-PASLZM-10A-01D	R1656C	NM_002016	11	157	0	169	83	649	0	242
FLG	2312	hgsc.bcm.edu	hg19	1	152282396	152282396	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R1656C	NM_002016	87	185	0	169	256	586	0	242
FLNA	2316	hgsc.bcm.edu	hg19	X	153588827	153588827	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	L1112L	NM_001456	6	35	0	29	161	612	0	61
FLNC	2318	hgsc.bcm.edu	hg19	7	128485019	128485019	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R1167H	NM_001458	16	87	0	32	163	924	0	363
FLNC	2318	hgsc.bcm.edu	hg19	7	128494938	128494938	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C2369C	NM_001458	25	205	1	106	86	826	2	382
FMNL3	91010	hgsc.bcm.edu	hg19	12	50052225	50052225	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R202Q	NM_175736	28	113	0	45	166	618	2	1810
FNBP1L	54874	hgsc.bcm.edu	hg19	1	93995308	93995308	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E169K	NM_017737	33	436	1	426	64	725	0	724
FNIP2	57600	hgsc.bcm.edu	hg19	4	159782863	159782863	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R467H	NM_020840	73	262	0	224	174	710	0	1250
FRAS1	80144	hgsc.bcm.edu	hg19	4	79166471	79166471	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	I101V	NM_025074	21	456	0	370	14	676	0	791
FRAS1	80144	hgsc.bcm.edu	hg19	4	79188479	79188479	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R292W	NM_025074	43	303	0	183	110	608	0	748
GDAP1	54332	hgsc.bcm.edu	hg19	8	75276453	75276453	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R310W	NM_018972	48	238	0	219	104	652	0	624
GDE1	51573	hgsc.bcm.edu	hg19	16	19516399	19516399	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R218W	NM_016641	91	645	1	539	114	726	3	965
GK2	2712	hgsc.bcm.edu	hg19	4	80329257	80329257	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A33V	NM_033214	40	295	0	324	110	658	7	817
GKN1	56287	hgsc.bcm.edu	hg19	2	69207157	69207157	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R157H	NM_019617	39	170	0	135	102	660	1	1115
GPR116	221395	hgsc.bcm.edu	hg19	6	46826491	46826491	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R1050H	NM_001098518	16	87	0	56	151	600	1	614
GPR52	9293	hgsc.bcm.edu	hg19	1	174417941	174417941	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R231H	NM_005684	142	509	2	476	155	709	0	772
GPR98	84059	hgsc.bcm.edu	hg19	5	89910836	89910836	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S69S	NM_032119	73	282	0	279	201	748	0	1132
GREB1L	80000	hgsc.bcm.edu	hg19	18	19088527	19088527	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	P1570P	NM_001142966	16	72	0	69	92	635	0	666
GRHL2	79977	hgsc.bcm.edu	hg19	8	102631779	102631779	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	V371M	NM_024915	51	222	0	214	182	732	0	741
GRIA1	2890	hgsc.bcm.edu	hg19	5	153065812	153065812	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	V353M	NM_000827	61	215	0	209	188	707	1	1805
GRID1	2894	hgsc.bcm.edu	hg19	10	87487629	87487629	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G506R	NM_017551	46	190	0	105	161	635	0	954
GRIN2A	2903	hgsc.bcm.edu	hg19	16	9857046	9857046	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R1452H	NM_000833	45	243	0	258	93	674	1	1023
GRIPAP1	56850	hgsc.bcm.edu	hg19	X	48840234	48840234	+	Missense_Mutation	SNP	C	C	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G409W	NM_020137	20	890	0	791	29	771	3	2372
GUCY1B3	2983	hgsc.bcm.edu	hg19	4	156710883	156710883	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	H105H	NM_000857	15	74	0	97	108	673	0	376
HCRTR2	3062	hgsc.bcm.edu	hg19	6	55120154	55120154	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T208M	NM_001526	54	176	0	152	172	673	0	670
HECW1	23072	hgsc.bcm.edu	hg19	7	43506137	43506137	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	P961P	NM_015052	40	115	0	155	94	360	0	907
HIP1	3092	hgsc.bcm.edu	hg19	7	75177049	75177049	+	Intron	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E821_E24splice_region	NM_005338	105	665	0	333	190	943	1	528
HLCS	3141	hgsc.bcm.edu	hg19	21	38137345	38137345	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	V550M	NM_000411	22	95	0	92	156	650	0	657
HNF4A	3172	hgsc.bcm.edu	hg19	20	42984461	42984461	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A6V	NM_001030004	17	53	0	43	158	552	0	410
HOXB3	3213	hgsc.bcm.edu	hg19	17	46627748	46627748	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A415V	NM_002146	86	622	3	499	90	618	0	498
HPS1	3257	hgsc.bcm.edu	hg19	10	100195130	100195130	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T99T	NM_182639	32	130	0	101	153	643	0	309
HPS3	84343	hgsc.bcm.edu	hg19	3	148858274	148858274	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R234Q	NM_032383	35	215	0	213	115	664	2	964
IDS	3423	hgsc.bcm.edu	hg19	X	148586611	148586611	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S19S	NM_000202	12	46	0	36	99	461	0	808
IFIH1	64135	hgsc.bcm.edu	hg19	2	163133303	163133303	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A733V	NM_022168	173	730	0	701	137	613	0	924
IL16	3603	hgsc.bcm.edu	hg19	15	81575096	81575096	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R400W	NM_172217	37	128	1	88	148	627	0	641
IL36A	27179	hgsc.bcm.edu	hg19	2	113765529	113765529	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A129T	NM_014440	40	169	0	157	139	503	0	599
ING3	54556	hgsc.bcm.edu	hg19	7	120609240	120609240	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R297Q	NM_019071	42	241	0	145	179	1007	0	722
INPP5K	51763	hgsc.bcm.edu	hg19	17	1399356	1399356	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	Q430*	NM_016532	28	133	0	88	166	712	0	284
INPP5K	51763	hgsc.bcm.edu	hg19	17	1400040	1400040	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	V341M	NM_016532	71	165	0	101	326	685	0	336
IRS4	8471	hgsc.bcm.edu	hg19	X	107977907	107977907	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	H556H	NM_003604	33	178	0	143	141	515	0	304
ITIH3	3699	hgsc.bcm.edu	hg19	3	52833058	52833058	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	D247G	NM_002217	112	438	0	271	181	741	0	521
KANK4	163782	hgsc.bcm.edu	hg19	1	62728833	62728833	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G824R	NM_181712	19	85	0	72	141	582	0	572
KBTBD7	84078	hgsc.bcm.edu	hg19	13	41767305	41767305	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S363S	NM_032138	23	154	0	103	105	622	0	406
KCNC1	3746	hgsc.bcm.edu	hg19	11	17793344	17793344	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	Y235H	NM_004976	103	371	2	294	182	690	0	690
KCNC1	3746	hgsc.bcm.edu	hg19	11	17793351	17793351	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R237Q	NM_004976	109	392	0	323	194	717	0	717
KDELR2	11014	hgsc.bcm.edu	hg19	7	6505830	6505830	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R159H	NM_006854	69	167	0	218	188	397	0	759
KDM5B	10765	hgsc.bcm.edu	hg19	1	202724546	202724546	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	M464T	NM_006618	26	117	1	94	95	607	0	440
KIAA0430	9665	hgsc.bcm.edu	hg19	16	15702182	15702182	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-03A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-03A-01D	TARGET-10-PASLZM-10A-01D	S1383L	NM_014647	23	179	0	196	103	631	1	732
KIAA0430	9665	hgsc.bcm.edu	hg19	16	15702182	15702182	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S1383L	NM_014647	74	189	0	196	293	650	1	732
ZSWIM8	23053	hgsc.bcm.edu	hg19	10	75556582	75556582	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T1028T	NM_015037	23	115	0	71	104	694	4	685
KIAA1161	57462	hgsc.bcm.edu	hg19	9	34370907	34370907	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A679T	NM_020702	7	32	0	28	139	536	0	473
KIAA1210	57481	hgsc.bcm.edu	hg19	X	118239089	118239089	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R312*	NM_020721	156	542	0	462	168	650	0	744
KIAA1217	56243	hgsc.bcm.edu	hg19	10	24762290	24762290	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	P327L	NM_019590	67	233	0	191	149	604	0	942
KIAA1217	56243	hgsc.bcm.edu	hg19	10	24802296	24802296	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R704C	NM_019590	56	214	0	168	166	684	2	645
KIAA1755	85449	hgsc.bcm.edu	hg19	20	36874345	36874345	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R63*	NM_001029864	14	49	0	36	183	678	1	1249
KIAA1804	84451	hgsc.bcm.edu	hg19	1	233490615	233490615	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S390L	NM_032435	56	234	0	207	157	686	0	1306
KIF13B	23303	hgsc.bcm.edu	hg19	8	28967510	28967510	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S1336S	NM_015254	52	182	0	139	189	701	0	585
KLHL32	114792	hgsc.bcm.edu	hg19	6	97533142	97533142	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-03A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-03A-01D	TARGET-10-PASLZM-10A-01D	T184T	NM_052904	25	175	0	202	94	625	4	1153
KLHL32	114792	hgsc.bcm.edu	hg19	6	97533142	97533142	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T184T	NM_052904	84	175	0	202	266	611	4	1153
KLK6	5653	hgsc.bcm.edu	hg19	19	51471359	51471359	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	M1T	NM_002774	105	445	0	347	157	649	0	134
KLRC1	3821	hgsc.bcm.edu	hg19	12	10603633	10603633	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A41A	NM_002259	221	961	1	942	188	747	0	706
KNCN	148930	hgsc.bcm.edu	hg19	1	47016855	47016855	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R11R	NM_001097611	9	31	0	23	110	448	0	354
KPNA7	402569	hgsc.bcm.edu	hg19	7	98800729	98800729	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A67A	NM_001145715	71	405	1	195	209	1139	2	1180
KRT75	9119	hgsc.bcm.edu	hg19	12	52826887	52826887	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T216T	NM_004693	55	206	0	148	211	774	1	480
LAMB1	3912	hgsc.bcm.edu	hg19	7	107566694	107566694	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S1666S	NM_002291	79	695	0	427	117	1094	2	957
LAMB1	3912	hgsc.bcm.edu	hg19	7	107618482	107618482	+	Intron	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	K334_E9splice_region	NM_002291	36	215	0	181	168	1044	0	574
LAMB2	3913	hgsc.bcm.edu	hg19	3	49168223	49168223	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R329H	NM_002292	25	170	0	83	115	673	0	240
LANCL1	10314	hgsc.bcm.edu	hg19	2	211336712	211336712	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R57Q	NM_006055	70	248	1	188	160	611	0	734
LCN8	138307	hgsc.bcm.edu	hg19	9	139649915	139649915	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R94W	NM_178469	19	71	0	77	169	672	0	135
LETM1	3954	hgsc.bcm.edu	hg19	4	1816177	1816177	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	K732E	NM_012318	205	786	2	673	161	644	0	273
LGALS4	3960	hgsc.bcm.edu	hg19	19	39292470	39292470	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S302S	NM_006149	26	88	1	66	162	639	2	2029
LIFR	3977	hgsc.bcm.edu	hg19	5	38484889	38484889	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R860Q	NM_001127671	43	154	0	139	180	710	0	916
LIPE	3991	hgsc.bcm.edu	hg19	19	42909670	42909670	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	L803L	NM_005357	54	205	0	129	200	701	1	747
LIPF	8513	hgsc.bcm.edu	hg19	10	90435347	90435347	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R274H	NM_004190	22	597	0	476	16	761	0	1294
MATN1-AS1	100129196	hgsc.bcm.edu	hg19	1	31194476	31194476	+	RNA	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E2_exon	NR_034182	12	36	0	37	185	665	0	154
LOXL3	84695	hgsc.bcm.edu	hg19	2	74762724	74762724	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	H469H	NM_032603	9	75	0	51	92	648	2	913
LPO	4025	hgsc.bcm.edu	hg19	17	56342210	56342210	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R465H	NM_006151	44	202	0	184	170	659	0	676
LRFN2	57497	hgsc.bcm.edu	hg19	6	40400804	40400804	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	V17M	NM_020737	6	31	0	22	90	537	0	415
LRP1B	53353	hgsc.bcm.edu	hg19	2	141299403	141299403	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S2444S	NM_018557	86	333	0	278	188	687	0	992
LRRC16B	90668	hgsc.bcm.edu	hg19	14	24528925	24528925	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A618T	NM_138360	58	231	0	138	156	614	1	289
LRRN3	54674	hgsc.bcm.edu	hg19	7	110764902	110764902	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T692A	NM_001099660	24	297	0	194	44	1037	0	863
MAGEC3	139081	hgsc.bcm.edu	hg19	X	140953260	140953260	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R43W	NM_138702	106	364	1	295	165	611	0	1125
MANEA	79694	hgsc.bcm.edu	hg19	6	96053755	96053755	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R288Q	NM_024641	19	565	0	510	22	684	0	1025
MAP3K13	9175	hgsc.bcm.edu	hg19	3	185198288	185198288	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	K924E	NM_004721	21	131	0	107	110	651	0	685
MARCH10	162333	hgsc.bcm.edu	hg19	17	60814499	60814499	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S244G	NM_152598	56	180	0	157	149	662	0	1275
MARVELD2	153562	hgsc.bcm.edu	hg19	5	68716311	68716311	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R367G	NM_001038603	24	126	0	111	192	714	0	706
MARVELD2	153562	hgsc.bcm.edu	hg19	5	68728483	68728483	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	V438M	NM_001038603	44	227	1	203	216	776	0	724
MARVELD3	91862	hgsc.bcm.edu	hg19	16	71674603	71674603	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T302T	NM_001017967	29	61	0	28	170	587	0	438
MBD6	114785	hgsc.bcm.edu	hg19	12	57922456	57922456	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	P943L	NM_052897	118	447	0	423	179	694	0	418
MBNL1	4154	hgsc.bcm.edu	hg19	3	152132898	152132898	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	V115M	NM_021038	47	270	0	174	91	746	0	632
MC3R	4159	hgsc.bcm.edu	hg19	20	54823856	54823856	+	5'UTR	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E1_UTR_5	NM_019888	49	202	0	139	154	622	0	1131
MED10	84246	hgsc.bcm.edu	hg19	5	6372584	6372584	+	3'UTR	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E4_UTR_3	NM_032286	22	123	0	103	157	623	0	445
MED12L	116931	hgsc.bcm.edu	hg19	3	151094859	151094859	+	Silent	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A1368A	NM_053002	60	336	0	288	108	691	0	656
MED13	9969	hgsc.bcm.edu	hg19	17	60033067	60033067	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	P1919L	NM_005121	71	258	0	241	164	565	2	605
MKL2	57496	hgsc.bcm.edu	hg19	16	14234490	14234490	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T9T	NM_014048	24	165	0	100	115	630	0	643
KMT2C	58508	hgsc.bcm.edu	hg19	7	151960209	151960209	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S397S	NM_170606	50	284	0	199	182	972	0	1245
MOCOS	55034	hgsc.bcm.edu	hg19	18	33840130	33840130	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R801C	NM_017947	73	565	0	466	96	712	2	895
MOV10L1	54456	hgsc.bcm.edu	hg19	22	50582601	50582601	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R812W	NM_018995	60	249	0	162	157	632	0	296
MPDZ	8777	hgsc.bcm.edu	hg19	9	13192254	13192254	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	V615A	NM_003829	96	530	1	433	117	639	0	794
MPPED1	758	hgsc.bcm.edu	hg19	22	43901528	43901528	+	3'UTR	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E7_UTR_3	NM_001044370	45	155	0	136	128	588	0	175
MRGPRX1	259249	hgsc.bcm.edu	hg19	11	18956162	18956162	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R57H	NM_147199	18	161	0	129	94	802	3	893
MRPS23	51649	hgsc.bcm.edu	hg19	17	55926649	55926649	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A56V	NM_016070	35	168	0	136	176	677	1	437
MSLN	10232	hgsc.bcm.edu	hg19	16	817464	817464	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A530A	NM_005823	30	137	0	127	107	434	0	3
MTHFD1	4522	hgsc.bcm.edu	hg19	14	64882196	64882196	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E121K	NM_005956	75	463	0	394	142	721	1	869
MTMR7	9108	hgsc.bcm.edu	hg19	8	17218683	17218683	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T137T	NM_004686	124	470	0	389	145	631	0	1153
MTOR	2475	hgsc.bcm.edu	hg19	1	11259455	11259455	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	P1371P	NM_004958	19	111	0	108	114	636	1	756
MUC7	4589	hgsc.bcm.edu	hg19	4	71339792	71339792	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S18S	NM_001145006	74	377	1	317	166	610	1	1126
MXRA5	25878	hgsc.bcm.edu	hg19	X	3229425	3229425	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	P2273P	NM_015419	18	112	0	115	96	640	0	336
MXRA5	25878	hgsc.bcm.edu	hg19	X	3235516	3235516	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C2069Y	NM_015419	33	60	0	39	257	577	0	497
MYBPH	4608	hgsc.bcm.edu	hg19	1	203138461	203138461	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	F384L	NM_004997	36	300	0	234	107	647	0	451
MYO1A	4640	hgsc.bcm.edu	hg19	12	57431759	57431759	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R619W	NM_005379	16	74	0	69	100	627	2	827
MYO1H	283446	hgsc.bcm.edu	hg19	12	109845662	109845663	+	Frame_Shift_Ins	INS	-	-	CG			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	-	-	-	CG	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	Y351fs	NM_001101421	7	406	0	330	19	718	0	1144
MYOF	26509	hgsc.bcm.edu	hg19	10	95169408	95169408	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S174S	NM_013451	37	171	0	101	103	637	1	1596
NAT1	9	hgsc.bcm.edu	hg19	8	18079920	18079920	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	D122N	NM_001160179	23	185	0	149	104	678	0	1144
NBPF15	284565	hgsc.bcm.edu	hg19	1	148594419	148594419	+	Missense_Mutation	SNP	G	G	T			TARGET-10-PASLZM-03A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-03A-01D	TARGET-10-PASLZM-10A-01D	V598L	NM_001170755	23	226	0	241	34	272	0	433
NBPF15	284565	hgsc.bcm.edu	hg19	1	148594419	148594419	+	Missense_Mutation	SNP	G	G	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	V598L	NM_001170755	110	272	0	241	139	278	0	433
LINC00174	285908	hgsc.bcm.edu	hg19	7	65842434	65842434	+	RNA	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E5_exon	NR_026873	5	16	0	15	127	687	1	771
NEDD9	4739	hgsc.bcm.edu	hg19	6	11190630	11190630	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R491Q	NM_006403	48	227	0	147	134	566	1	501
NEK10	152110	hgsc.bcm.edu	hg19	3	27326377	27326377	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	K622R	NM_199347	127	559	0	543	196	780	0	1467
NEK10	152110	hgsc.bcm.edu	hg19	3	27326410	27326410	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	P611L	NM_199347	120	515	1	502	194	734	1	1413
NMU	10874	hgsc.bcm.edu	hg19	4	56482536	56482536	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S63L	NM_006681	93	395	0	382	192	762	0	989
NOS2	4843	hgsc.bcm.edu	hg19	17	26108210	26108210	+	Intron	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R241_E8splice_region	NM_000625	4	22	0	25	153	589	0	1112
NPHP4	261734	hgsc.bcm.edu	hg19	1	6012753	6012753	+	Intron	SNP	T	T	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E270_E7splice_region	NM_015102	10	43	0	54	114	480	0	189
NR6A1	2649	hgsc.bcm.edu	hg19	9	127316795	127316795	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R66H	NM_033334	27	112	0	72	186	731	1	910
NTRK2	4915	hgsc.bcm.edu	hg19	9	87570289	87570289	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A677T	NM_006180	18	66	0	39	146	591	2	878
NUFIP1	26747	hgsc.bcm.edu	hg19	13	45540055	45540055	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A251T	NM_012345	24	1072	0	1069	16	805	2	1159
OBSCN	84033	hgsc.bcm.edu	hg19	1	228475978	228475978	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S3343L	NM_001098623	50	179	0	164	159	611	0	272
OR4S1	256148	hgsc.bcm.edu	hg19	11	48328363	48328363	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	V197M	NM_001004725	56	285	2	260	115	688	3	941
OR51F1	256892	hgsc.bcm.edu	hg19	11	4790345	4790345	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R268Q	NM_001004752	37	176	0	150	127	655	1	522
OR51F1	256892	hgsc.bcm.edu	hg19	11	4790391	4790391	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	F253L	NM_001004752	31	150	0	126	118	644	0	575
OR5A2	219981	hgsc.bcm.edu	hg19	11	59189574	59189574	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	V285M	NM_001001954	34	173	0	160	182	727	0	931
OR5K4	403278	hgsc.bcm.edu	hg19	3	98073453	98073453	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-03A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-03A-01D	TARGET-10-PASLZM-10A-01D	Y252Y	NM_001005517	24	249	0	231	97	781	0	1889
OR5K4	403278	hgsc.bcm.edu	hg19	3	98073453	98073453	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	Y252Y	NM_001005517	78	217	0	231	331	714	0	1889
ORC3	23595	hgsc.bcm.edu	hg19	6	88317384	88317384	+	Intron	SNP	T	T	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	D143_E6splice_region	NM_012381	48	304	3	305	156	833	0	761
OTOL1	131149	hgsc.bcm.edu	hg19	3	161220147	161220147	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	P169P	NM_001080440	26	134	0	126	169	615	1	860
PARD3	56288	hgsc.bcm.edu	hg19	10	34671594	34671594	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A425T	NM_019619	33	211	1	163	102	618	1	664
PAX3	5077	hgsc.bcm.edu	hg19	2	223085050	223085050	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	V328I	NM_181457	22	644	0	440	19	671	2	856
PCDH15	65217	hgsc.bcm.edu	hg19	10	55566796	55566796	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R1531H	NM_001142771	28	134	0	128	146	566	4	842
PCDHAC1	56135	hgsc.bcm.edu	hg19	5	140308873	140308873	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R799Q	NM_018898	53	213	0	182	179	677	0	504
PCDHAC2	56134	hgsc.bcm.edu	hg19	5	140347423	140347423	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	V358M	NM_031883	17	53	0	41	147	577	0	381
PCDHB7	56129	hgsc.bcm.edu	hg19	5	140553101	140553101	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R229C	NM_018940	30	110	0	98	147	624	1	416
PCDHGA5	56110	hgsc.bcm.edu	hg19	5	140745430	140745430	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T511T	NM_018918	41	161	0	116	165	627	0	236
PCDHGA6	56109	hgsc.bcm.edu	hg19	5	140753783	140753783	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	V45I	NM_018919	6	53	0	31	113	625	0	228
PCDHGB5	56101	hgsc.bcm.edu	hg19	5	140779207	140779207	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A505T	NM_018925	8	59	0	32	158	618	0	328
PDZRN3	23024	hgsc.bcm.edu	hg19	3	73453385	73453385	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T360T	NM_015009	71	265	0	172	167	630	0	570
PER3	8863	hgsc.bcm.edu	hg19	1	7887764	7887764	+	Silent	SNP	T	T	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	I917I	NM_016831	17	91	0	81	173	657	0	697
PHF7	51533	hgsc.bcm.edu	hg19	3	52455051	52455051	+	Silent	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	Q182Q	NM_173341	38	164	1	145	190	718	0	607
PIK3R2	5296	hgsc.bcm.edu	hg19	19	18271294	18271294	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	P112P	NM_005027	80	317	0	212	196	672	0	196
PINX1	54984	hgsc.bcm.edu	hg19	8	10683688	10683688	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R123H	NM_017884	163	724	0	673	201	757	0	829
PIP5K1C	23396	hgsc.bcm.edu	hg19	19	3643249	3643249	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	P547P	NM_012398	15	100	0	78	105	601	0	130
PKP2	5318	hgsc.bcm.edu	hg19	12	33030843	33030843	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A324V	NM_001005242	15	49	0	49	151	612	0	586
PLCXD1	55344	hgsc.bcm.edu	hg19	X	209876	209876	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G242S	NM_018390	33	117	0	80	153	559	1	143
PLXND1	23129	hgsc.bcm.edu	hg19	3	129289713	129289713	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C1222C	NM_015103	37	150	0	128	165	630	1	482
PMS2	5395	hgsc.bcm.edu	hg19	7	6022454	6022454	+	Splice_Site	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A725_E12splice	NM_000535	34	94	0	139	69	151	0	243
POLD1	5424	hgsc.bcm.edu	hg19	19	50906393	50906393	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R352C	NM_002691	14	36	0	29	180	591	0	894
POMGNT1	55624	hgsc.bcm.edu	hg19	1	46661564	46661564	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T151T	NM_017739	40	158	0	109	172	689	0	334
POU5F1P4	645682	hgsc.bcm.edu	hg19	1	155404011	155404011	+	RNA	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E1_exon	NR_034180	14	51	0	48	129	534	1	346
PRKCD	5580	hgsc.bcm.edu	hg19	3	53217481	53217481	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R224H	NM_006254	57	208	0	153	173	650	2	568
PSAPL1	768239	hgsc.bcm.edu	hg19	4	7435442	7435442	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A389T	NM_001085382	10	36	0	23	111	536	0	269
PSKH2	85481	hgsc.bcm.edu	hg19	8	87076734	87076734	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A104A	NM_033126	9	63	0	63	90	607	0	612
PSMD13	5719	hgsc.bcm.edu	hg19	11	248936	248936	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	M218T	NM_002817	17	131	0	105	104	726	0	502
PSME4	23198	hgsc.bcm.edu	hg19	2	54127116	54127116	+	Silent	SNP	T	T	C			TARGET-10-PASLZM-03A-01D	TARGET-10-PASLZM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-03A-01D	TARGET-10-PASLZM-10A-01D	Q1108Q	NM_014614	123	1146	1	1028	86	781	0	878
PSME4	23198	hgsc.bcm.edu	hg19	2	54127116	54127116	+	Silent	SNP	T	T	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	Q1108Q	NM_014614	520	1171	1	1028	387	762	0	878
PTGER3	5733	hgsc.bcm.edu	hg19	1	71513010	71513010	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R84H	NM_001126044	7	42	0	21	134	491	0	279
PTH	5741	hgsc.bcm.edu	hg19	11	13514053	13514053	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R83*	NM_000315	93	396	0	306	193	693	0	669
PTPN14	5784	hgsc.bcm.edu	hg19	1	214557038	214557038	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S720S	NM_005401	11	39	0	44	128	493	2	347
PTPN4	5775	hgsc.bcm.edu	hg19	2	120692466	120692466	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S429S	NM_002830	94	389	0	332	159	624	0	695
PTPRJ	5795	hgsc.bcm.edu	hg19	11	48134360	48134360	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T59T	NM_001098503	36	141	0	88	193	794	1	1257
PTPRN	5798	hgsc.bcm.edu	hg19	2	220172184	220172184	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R88*	NM_002846	26	116	0	105	156	683	0	552
PUS7	54517	hgsc.bcm.edu	hg19	7	105103101	105103101	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R575Q	NM_019042	140	898	0	519	205	1114	0	830
PWWP2B	170394	hgsc.bcm.edu	hg19	10	134219388	134219388	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R462C	NM_001098637	9	43	0	38	97	515	0	25
PXDN	7837	hgsc.bcm.edu	hg19	2	1658166	1658166	+	Intron	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	D648_E15splice_region	NM_012293	81	333	0	228	166	705	0	731
PYGO2	90780	hgsc.bcm.edu	hg19	1	154932172	154932172	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G102R	NM_138300	7	20	0	30	126	568	0	275
RAB31	11031	hgsc.bcm.edu	hg19	18	9859393	9859393	+	3'UTR	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E7_UTR_3	NM_006868	15	52	0	44	153	637	0	967
RAD21	5885	hgsc.bcm.edu	hg19	8	117875477	117875477	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASLZM-03A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-03A-01D	TARGET-10-PASLZM-10A-01D	S56P	NM_006265	8	417	0	364	4	761	0	814
RAD21	5885	hgsc.bcm.edu	hg19	8	117875477	117875477	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S56P	NM_006265	178	387	0	364	304	661	0	814
RASGRP3	25780	hgsc.bcm.edu	hg19	2	33749010	33749010	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S194L	NM_170672	51	340	0	353	117	685	0	825
RBMXL3	139804	hgsc.bcm.edu	hg19	X	114424301	114424301	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	P99P	NM_001145346	4	14	0	17	147	575	1	254
REPIN1	29803	hgsc.bcm.edu	hg19	7	150068437	150068437	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R36H	NM_013400	8	24	0	17	122	710	0	162
RETN	56729	hgsc.bcm.edu	hg19	19	7734318	7734318	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A36T	NM_020415	32	140	0	126	178	634	1	1298
RLF	6018	hgsc.bcm.edu	hg19	1	40702412	40702412	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R680C	NM_012421	74	244	0	186	193	761	0	693
RNF113A	7737	hgsc.bcm.edu	hg19	X	119004535	119004535	+	3'UTR	SNP	T	T	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E1_UTR_3	NM_006978	26	91	0	88	194	753	0	551
RNF126P1	376412	hgsc.bcm.edu	hg19	17	55123433	55123433	+	RNA	SNP	T	T	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E1_exon	NR_002818	12	120	0	104	91	632	0	527
RNF148	378925	hgsc.bcm.edu	hg19	7	122342351	122342351	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A152T	NM_198085	37	369	0	208	89	898	1	681
RNF207	388591	hgsc.bcm.edu	hg19	1	6269224	6269224	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	L173L	NM_207396	16	28	0	19	255	541	0	116
RNF208	727800	hgsc.bcm.edu	hg19	9	140115141	140115141	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	Y175C	NM_031297	16	65	0	37	152	509	0	42
RNF222	643904	hgsc.bcm.edu	hg19	17	8296813	8296813	+	Intron	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	UTR_5_E3splice_region	NM_001146684	8	64	0	38	93	624	1	396
RNF8	9025	hgsc.bcm.edu	hg19	6	37344809	37344809	+	Missense_Mutation	SNP	G	G	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E412D	NM_003958	94	408	0	334	119	472	0	607
RP1	6101	hgsc.bcm.edu	hg19	8	55533536	55533536	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T4A	NM_006269	43	271	0	263	105	715	0	413
RPA1	6117	hgsc.bcm.edu	hg19	17	1782578	1782578	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E277K	NM_002945	12	242	0	162	23	681	0	821
RSBN1	54665	hgsc.bcm.edu	hg19	1	114340575	114340575	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R263*	NM_018364	79	377	0	341	205	769	1	1508
RTL1	388015	hgsc.bcm.edu	hg19	14	101349785	101349785	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	Y447Y	NM_001134888	7	29	0	30	134	525	0	206
RYR2	6262	hgsc.bcm.edu	hg19	1	237955507	237955507	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A4556T	NM_001035	39	143	2	129	177	663	0	626
SAMD11	148398	hgsc.bcm.edu	hg19	1	879363	879363	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R626W	NM_152486	7	18	0	20	159	594	1	205
SBF1P1	100133234	hgsc.bcm.edu	hg19	8	56365313	56365313	+	RNA	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E1_exon	NR_027765	12	56	0	40	158	561	0	275
SCLY	51540	hgsc.bcm.edu	hg19	2	238991910	238991910	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A267T	NM_016510	115	546	1	472	188	729	1	481
SCN5A	6331	hgsc.bcm.edu	hg19	3	38627356	38627356	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S871S	NM_198056	23	165	0	103	100	612	4	1528
SCN8A	6334	hgsc.bcm.edu	hg19	12	52099305	52099305	+	Silent	SNP	T	T	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A413A	NM_014191	103	414	2	362	221	755	0	1420
SEC23IP	11196	hgsc.bcm.edu	hg19	10	121663615	121663615	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S309S	NM_007190	51	241	0	203	194	785	2	649
SENP1	29843	hgsc.bcm.edu	hg19	12	48459404	48459404	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A365V	NM_014554	20	411	0	336	26	751	0	813
SENP6	26054	hgsc.bcm.edu	hg19	6	76376465	76376465	+	Silent	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R344R	NM_015571	19	157	0	117	104	602	1	805
SEPHS1	22929	hgsc.bcm.edu	hg19	10	13375926	13375926	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A151T	NM_012247	39	188	0	167	165	706	1	483
SERPINB4	6318	hgsc.bcm.edu	hg19	18	61305069	61305069	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E353K	NM_002974	49	218	0	196	166	641	1	807
SETD1B	23067	hgsc.bcm.edu	hg19	12	122255706	122255706	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	D1062G	NM_015048	15	84	0	78	191	734	0	227
SFN	2810	hgsc.bcm.edu	hg19	1	27190111	27190111	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T136T	NM_006142	19	71	0	49	169	610	0	551
SCAF4	57466	hgsc.bcm.edu	hg19	21	33078662	33078662	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S13S	NM_001145445	69	255	0	252	169	651	0	875
SGSH	6448	hgsc.bcm.edu	hg19	17	78184723	78184723	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R346Q	NM_000199	7	21	0	29	167	625	0	87
SH3PXD2A	9644	hgsc.bcm.edu	hg19	10	105365600	105365600	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S433S	NM_014631	47	171	0	122	171	701	0	739
SH3RF1	57630	hgsc.bcm.edu	hg19	4	170190084	170190084	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T94A	NM_020870	20	99	0	63	108	716	0	392
SLC10A4	201780	hgsc.bcm.edu	hg19	4	48490578	48490578	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	Y312Y	NM_152679	74	236	0	237	160	680	0	176
SLC1A4	6509	hgsc.bcm.edu	hg19	2	65237863	65237863	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E256K	NM_003038	95	357	1	244	182	704	0	842
SLC27A6	28965	hgsc.bcm.edu	hg19	5	128351700	128351700	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T364T	NM_001017372	172	701	0	562	192	719	0	936
SLC4A10	57282	hgsc.bcm.edu	hg19	2	162696414	162696414	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	D131D	NM_022058	45	358	1	322	105	612	0	979
SLC4A8	9498	hgsc.bcm.edu	hg19	12	51863441	51863441	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	W465R	NM_001039960	33	224	0	144	103	649	1	904
SLC8A3	6547	hgsc.bcm.edu	hg19	14	70633976	70633976	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T388T	NM_058240	20	77	0	76	187	676	2	1014
SNRNP200	23020	hgsc.bcm.edu	hg19	2	96959224	96959224	+	Silent	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	D622D	NM_014014	14	78	0	61	191	705	0	507
SNX14	57231	hgsc.bcm.edu	hg19	6	86267714	86267714	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	I161T	NM_020468	20	941	0	958	22	701	1	1011
SORCS3	22986	hgsc.bcm.edu	hg19	10	106974255	106974255	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A811T	NM_014978	16	121	0	108	81	509	2	573
SP110	3431	hgsc.bcm.edu	hg19	2	231037619	231037619	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C549C	NM_080424	19	150	0	109	85	511	0	743
SPTA1	6708	hgsc.bcm.edu	hg19	1	158613134	158613134	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R1474W	NM_003126	110	465	0	316	174	726	4	943
SPTBN5	51332	hgsc.bcm.edu	hg19	15	42180265	42180265	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A139T	NM_016642	28	79	0	42	163	634	3	197
SRCIN1	80725	hgsc.bcm.edu	hg19	17	36709077	36709077	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S739L	NM_025248	27	117	0	81	152	652	1	417
SSTR4	6754	hgsc.bcm.edu	hg19	20	23016283	23016283	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A55T	NM_001052	12	46	0	45	68	245	0	156
STAB2	55576	hgsc.bcm.edu	hg19	12	104054528	104054528	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	N619S	NM_017564	59	460	1	361	110	679	1	696
STARD8	9754	hgsc.bcm.edu	hg19	X	67943511	67943511	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E868G	NM_014725	11	47	0	20	76	519	0	162
STAT1	6772	hgsc.bcm.edu	hg19	2	191843615	191843615	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	F614L	NM_139266	19	56	0	47	162	633	0	623
STAT1	6772	hgsc.bcm.edu	hg19	2	191843698	191843698	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R586Q	NM_139266	13	62	0	54	145	584	0	622
STAT5B	6777	hgsc.bcm.edu	hg19	17	40354440	40354440	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G719R	NM_012448	26	88	0	82	193	658	1	644
STK11IP	114790	hgsc.bcm.edu	hg19	2	220473891	220473891	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R639C	NM_052902	39	170	0	107	153	595	0	221
STRA8	346673	hgsc.bcm.edu	hg19	7	134931257	134931257	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A179T	NM_182489	8	44	0	27	118	712	0	681
STRADA	92335	hgsc.bcm.edu	hg19	17	61781804	61781804	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R296W	NM_153335	12	57	0	31	142	499	0	346
SVIL	6840	hgsc.bcm.edu	hg19	10	29822056	29822056	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G414R	NM_021738	35	160	0	135	177	645	0	720
SYNE1	23345	hgsc.bcm.edu	hg19	6	152720850	152720850	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R2387C	NM_033071	97	366	0	264	160	649	0	751
SYT17	51760	hgsc.bcm.edu	hg19	16	19191812	19191812	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S94S	NM_016524	25	68	0	51	152	638	0	523
TAF3	83860	hgsc.bcm.edu	hg19	10	8006059	8006059	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R196W	NM_031923	39	152	0	103	178	745	2	1190
TARBP1	6894	hgsc.bcm.edu	hg19	1	234563331	234563331	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R1081H	NM_005646	64	284	0	266	188	761	0	583
TBC1D17	79735	hgsc.bcm.edu	hg19	19	50387002	50387002	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E376K	NM_024682	65	262	2	198	183	700	0	188
TBC1D2B	23102	hgsc.bcm.edu	hg19	15	78316786	78316786	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T394T	NM_015079	31	122	0	113	163	666	0	715
TCF12	6938	hgsc.bcm.edu	hg19	15	57524980	57524980	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R299H	NM_003205	138	503	0	379	212	751	0	1023
TDRD12	91646	hgsc.bcm.edu	hg19	19	33229831	33229831	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A85T	NM_001110822	163	652	0	504	176	721	1	901
TFCP2L1	29842	hgsc.bcm.edu	hg19	2	121989456	121989456	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	I429I	NM_014553	17	95	0	76	166	620	0	414
TLN2	83660	hgsc.bcm.edu	hg19	15	63055824	63055824	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R1675Q	NM_015059	15	46	0	40	143	589	0	1147
TMEM120B	144404	hgsc.bcm.edu	hg19	12	122208836	122208836	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	H192R	NM_001080825	32	100	0	82	172	647	0	743
TMEM181	57583	hgsc.bcm.edu	hg19	6	159029448	159029448	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A390T	NM_020823	31	424	1	286	57	665	0	565
TMEM201	199953	hgsc.bcm.edu	hg19	1	9658634	9658634	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	L186S	NM_001130924	9	59	0	37	95	588	0	213
TMEM79	84283	hgsc.bcm.edu	hg19	1	156255686	156255686	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	P223P	NM_032323	11	66	0	29	155	597	1	324
TOM1L2	146691	hgsc.bcm.edu	hg19	17	17750821	17750821	+	3'UTR	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E15_UTR_3	NM_001082968	5	13	0	21	195	726	0	190
TRAF3IP1	26146	hgsc.bcm.edu	hg19	2	239237349	239237349	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R126Q	NM_015650	30	242	0	188	125	724	0	474
TREM1	54210	hgsc.bcm.edu	hg19	6	41250160	41250160	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	D127N	NM_018643	24	110	0	84	169	636	2	1052
TRPM2	7226	hgsc.bcm.edu	hg19	21	45826648	45826648	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G988S	NM_003307	33	93	0	56	165	630	0	2
TRPM4	54795	hgsc.bcm.edu	hg19	19	49685881	49685881	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R437Q	NM_017636	46	189	0	130	180	638	4	796
TSGA10IP	254187	hgsc.bcm.edu	hg19	11	65726657	65726657	+	Intron	SNP	T	T	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A475_E7splice_region	NM_152762	12	46	1	42	152	578	0	180
TSHZ1	10194	hgsc.bcm.edu	hg19	18	72998774	72998774	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	P426L	NM_005786	27	102	0	73	145	575	0	450
TSHZ1	10194	hgsc.bcm.edu	hg19	18	72999747	72999747	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A750A	NM_005786	13	36	0	26	140	536	1	446
TSHZ2	128553	hgsc.bcm.edu	hg19	20	51870613	51870613	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G206R	NM_173485	31	125	1	84	175	665	0	862
TSSC1	7260	hgsc.bcm.edu	hg19	2	3196304	3196304	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T290T	NM_003310	20	66	0	38	180	647	0	69
TTN	7273	hgsc.bcm.edu	hg19	2	179566307	179566307	+	Silent	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	P8938P	NM_133378	20	445	0	405	28	668	0	792
TULP4	56995	hgsc.bcm.edu	hg19	6	158834140	158834140	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T99M	NM_020245	125	433	0	289	196	672	0	544
UBL4A	8266	hgsc.bcm.edu	hg19	X	153714310	153714310	+	Nonsense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R55*	NM_014235	41	188	0	152	64	384	0	89
UNC5CL	222643	hgsc.bcm.edu	hg19	6	41000776	41000776	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R266C	NM_173561	42	171	0	101	159	637	0	767
UPP2	151531	hgsc.bcm.edu	hg19	2	158991295	158991295	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	D283N	NM_173355	76	281	0	196	154	630	0	1227
UPRT	139596	hgsc.bcm.edu	hg19	X	74513340	74513340	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A140A	NM_145052	266	1068	2	1015	174	688	0	750
UXS1	80146	hgsc.bcm.edu	hg19	2	106710254	106710254	+	3'UTR	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E15_UTR_3	NM_025076	5	19	0	48	170	725	0	431
VPS11	55823	hgsc.bcm.edu	hg19	11	118940989	118940989	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R173Q	NM_021729	64	247	0	212	219	791	1	589
VSIG1	340547	hgsc.bcm.edu	hg19	X	107288247	107288247	+	5'UTR	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	E1_UTR_5	NM_182607	18	58	0	70	187	648	0	1368
VWA5A	4013	hgsc.bcm.edu	hg19	11	123989382	123989382	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T204T	NM_001130142	51	187	0	148	207	751	2	1052
VWF	7450	hgsc.bcm.edu	hg19	12	6219673	6219673	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-03A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-03A-01D	TARGET-10-PASLZM-10A-01D	A133A	NM_000552	10	170	0	105	83	684	0	951
VWF	7450	hgsc.bcm.edu	hg19	12	6219673	6219673	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A133A	NM_000552	64	161	0	105	309	627	0	951
WHSC1	7468	hgsc.bcm.edu	hg19	4	1976665	1976665	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T1150A	NM_001042424	107	216	0	145	335	685	1	483
WSCD2	9671	hgsc.bcm.edu	hg19	12	108589747	108589747	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S46S	NM_014653	10	57	0	46	100	583	2	1564
XIRP2	129446	hgsc.bcm.edu	hg19	2	168106327	168106327	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G2809R	NM_152381	37	120	0	162	196	668	1	1311
YLPM1	56252	hgsc.bcm.edu	hg19	14	75279460	75279460	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	P1826L	NM_019589	19	140	0	116	135	739	0	929
YTHDF1	54915	hgsc.bcm.edu	hg19	20	61835140	61835140	+	Missense_Mutation	SNP	A	A	G			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	M51T	NM_017798	39	183	0	105	160	649	0	351
ZBTB20	26137	hgsc.bcm.edu	hg19	3	114069990	114069990	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R239H	NM_001164343	29	108	0	42	145	542	1	588
ZBTB20	26137	hgsc.bcm.edu	hg19	3	114070107	114070107	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A200V	NM_001164343	6	36	0	26	77	433	2	449
ZC3H18	124245	hgsc.bcm.edu	hg19	16	88653074	88653074	+	Missense_Mutation	SNP	T	T	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C224R	NM_144604	55	215	0	156	133	634	0	412
ZFP30	22835	hgsc.bcm.edu	hg19	19	38125901	38125901	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R514Q	NM_014898	65	321	1	269	191	748	1	909
ZFR	51663	hgsc.bcm.edu	hg19	5	32356021	32356021	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R1024C	NM_016107	140	570	1	488	175	693	0	682
ZFYVE20	64145	hgsc.bcm.edu	hg19	3	15116217	15116217	+	Missense_Mutation	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A476V	NM_022340	18	80	0	57	104	606	0	513
ZNF101	94039	hgsc.bcm.edu	hg19	19	19790215	19790215	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T139T	NM_033204	18	81	0	61	175	657	2	781
ZNF182	7569	hgsc.bcm.edu	hg19	X	47836715	47836715	+	Silent	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T257T	NM_006962	60	216	0	204	189	687	1	940
ZBTB21	49854	hgsc.bcm.edu	hg19	21	43413810	43413811	+	Frame_Shift_Ins	INS	-	-	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	-	-	-	T	-	-	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R132fs	NM_020727	41	192	0	199	164	811	4	608
ZNF341	84905	hgsc.bcm.edu	hg19	20	32345116	32345116	+	Nonsense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	R302*	NM_032819	5	36	0	42	119	684	0	515
ZNF445	353274	hgsc.bcm.edu	hg19	3	44489138	44489138	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	P675P	NM_181489	25	153	0	148	106	648	1	548
ZNF480	147657	hgsc.bcm.edu	hg19	19	52817450	52817450	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	A39A	NM_144684	83	335	0	261	137	562	0	674
ZNF653	115950	hgsc.bcm.edu	hg19	19	11598135	11598135	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T381T	NM_138783	22	89	0	71	153	586	0	583
ZNF660	285349	hgsc.bcm.edu	hg19	3	44635904	44635904	+	Silent	SNP	G	G	A			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T73T	NM_173658	34	172	0	127	187	695	0	622
ZNF827	152485	hgsc.bcm.edu	hg19	4	146744592	146744592	+	Missense_Mutation	SNP	C	C	T			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	G789R	NM_178835	226	895	3	760	169	665	1	874
ZNF836	162962	hgsc.bcm.edu	hg19	19	52658227	52658227	+	Silent	SNP	T	T	C			TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic		WES	Capture			Illumina HiSeq	TARGET-10-PASLZM-04A-01D	TARGET-10-PASLZM-10A-01D	S903S	NM_001102657	132	526	1	548	190	722	0	669
