Source Name	Provider	Material Type	Term Source REF	Characteristics[Organism]	Term Source REF	Characteristics[Sex]	Term Source REF	Characteristics[DiseaseState]	Term Source REF	Comment[OCG Cohort]	Sample Name	Material Type	Term Source REF	Characteristics[OrganismPart]	Term Source REF	Description	Protocol REF	Performer	Extract Name	Material Type	Term Source REF	Comment[SRA_SAMPLE]	Protocol REF	Performer	Extract Name	Comment[LIBRARY_LAYOUT]	Comment[LIBRARY_SOURCE]	Comment[LIBRARY_STRATEGY]	Comment[LIBRARY_SELECTION]	Comment[LIBRARY_NAME]	Comment[SRA_EXPERIMENT]	Protocol REF	Performer	Date	Assay Name	Technology Type	Term Source REF	Comment[SPOT_LENGTH]	Protocol REF	Parameter Value[Software Versions]	Scan Name	Comment[SRA_RUN]	Comment[SRA_FILE_URI]	Comment[OCG Data Level]	Protocol REF	Derived Array Data File	Comment[SRA_RUN]	Comment[SRA_FILE_URI]	Comment[OCG Data Level]	Comment[ASSEMBLY_NAME]	Protocol REF	Derived Array Data File	Comment[OCG Data Level]
TARGET-10-DCC001	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon		NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-DCC001-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-DCC001-03A-01R	RNA	EFO	SRS189983	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-DCC001-03A-01R HS2163 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS2163	SRX060126	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-DCC001-03A-01R HS2163 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.6.47.1					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS2163.bam	SRR457656	@dbgap@:reads/SRP011998/SRS189983/SRX060126/SRR457656/SRR457656.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS2163.exon.quantification.txt	3
TARGET-10-DCC001	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon		NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-DCC001-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-DCC001-03A-01R	RNA	EFO	SRS189983	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-DCC001-03A-01R HS2163 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS2163	SRX060126	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-DCC001-03A-01R HS2163 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.6.47.1					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS2163.bam	SRR457656	@dbgap@:reads/SRP011998/SRS189983/SRX060126/SRR457656/SRR457656.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS2163.gene.quantification.txt	3
TARGET-10-DCC001	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon		NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-DCC001-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-DCC001-03A-01R	RNA	EFO	SRS189983	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-DCC001-03A-01R HS2163 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS2163	SRX060126	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-DCC001-03A-01R HS2163 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.6.47.1					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS2163.bam	SRR457656	@dbgap@:reads/SRP011998/SRS189983/SRX060126/SRR457656/SRR457656.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS2163.spljxn.quantification.txt	3
TARGET-10-DCC001	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon		NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-DCC001-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-DCC001-03A-01R	RNA	EFO	SRS189983	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-DCC001-03A-01R HS2163 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS2163	SRX060126	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-DCC001-03A-01R HS2163 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.6.47.1					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS2163.bam	SRR457656	@dbgap@:reads/SRP011998/SRS189983/SRX060126/SRR457656/SRR457656.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall:01	HS2163_3_lanes_dupsFlagged.bam.varFilter.Scored.ge1.anno.maf.txt	3
TARGET-10-DCC002	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-DCC002-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-DCC002-09A-01R	RNA	EFO	SRS270489	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-DCC002-09A-01R SJBALL010 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	RANDOM PCR	SJBALL010	SRX107683	stjude.org:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	StJude	2011-07-20	TARGET-10-DCC002-09A-01R SJBALL010 run	sequencing assay	EFO	200	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.9.35					stjude.org:Protocol:mRNAseq-ReadAlign:01	SJBALL0101.bam	SRR452447	@dbgap@:reads/SRP011998/SRS270489/SRX107683/SRR452447/SRR452447.sra	2	HG19	stjude.org:Protocol:mRNAseq-Expression:01	SJBALL010.exon.quantification.txt	3
TARGET-10-DCC002	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-DCC002-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-DCC002-09A-01R	RNA	EFO	SRS270489	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-DCC002-09A-01R SJBALL010 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	RANDOM PCR	SJBALL010	SRX107683	stjude.org:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	StJude	2011-07-20	TARGET-10-DCC002-09A-01R SJBALL010 run	sequencing assay	EFO	200	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.9.35					stjude.org:Protocol:mRNAseq-ReadAlign:01	SJBALL0101.bam	SRR452447	@dbgap@:reads/SRP011998/SRS270489/SRX107683/SRR452447/SRR452447.sra	2	HG19	stjude.org:Protocol:mRNAseq-Expression:01	SJBALL010.gene.quantification.txt	3
TARGET-10-DCC002	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-DCC002-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-DCC002-09A-01R	RNA	EFO	SRS270489	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-DCC002-09A-01R SJBALL010 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	RANDOM PCR	SJBALL010	SRX107683	stjude.org:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	StJude	2011-07-20	TARGET-10-DCC002-09A-01R SJBALL010 run	sequencing assay	EFO	200	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.9.35					stjude.org:Protocol:mRNAseq-ReadAlign:01	SJBALL0101.bam	SRR452447	@dbgap@:reads/SRP011998/SRS270489/SRX107683/SRR452447/SRR452447.sra	2	HG19	stjude.org:Protocol:mRNAseq-Expression:01	SJBALL010.spljxn.quantification.txt	3
TARGET-10-DCC002	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-DCC002-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-DCC002-09A-01R	RNA	EFO	SRS270489	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-DCC002-09A-01R SJBALL010 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	RANDOM PCR	SJBALL010	SRX107683	stjude.org:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	StJude	2011-07-20	TARGET-10-DCC002-09A-01R SJBALL010 run	sequencing assay	EFO	200	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.9.35					stjude.org:Protocol:mRNAseq-ReadAlign:01	SJBALL0101.bam	SRR452447	@dbgap@:reads/SRP011998/SRS270489/SRX107683/SRR452447/SRR452447.sra	2	HG19	stjude.org:Protocol:mRNAseq-VariantCall:01	SJBALL010.snps.maf.txt	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKHZT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKHZT-03A-01R	RNA	EFO	SRS189984	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKHZT-03A-01R HS0825 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS0825	SRX060106	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAII:01	BCCA		TARGET-10-PAKHZT-03A-01R HS0825 run	sequencing assay	EFO	98	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.0					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS0825.bam	SRR457636	@dbgap@:reads/SRP011998/SRS189984/SRX060106/SRR457636/SRR457636.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS0825.exon.quantification.txt	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKHZT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKHZT-03A-01R	RNA	EFO	SRS189984	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKHZT-03A-01R HS0825 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS0825	SRX060106	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAII:01	BCCA		TARGET-10-PAKHZT-03A-01R HS0825 run	sequencing assay	EFO	98	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.0					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS0825.bam	SRR457636	@dbgap@:reads/SRP011998/SRS189984/SRX060106/SRR457636/SRR457636.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS0825.gene.quantification.txt	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKHZT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKHZT-03A-01R	RNA	EFO	SRS189984	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKHZT-03A-01R HS0825 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS0825	SRX060106	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAII:01	BCCA		TARGET-10-PAKHZT-03A-01R HS0825 run	sequencing assay	EFO	98	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.0					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS0825.bam	SRR457636	@dbgap@:reads/SRP011998/SRS189984/SRX060106/SRR457636/SRR457636.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS0825.spljxn.quantification.txt	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKHZT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKHZT-03A-01R	RNA	EFO	SRS189984	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKHZT-03A-01R HS0825 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS0825	SRX060106	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAII:01	BCCA		TARGET-10-PAKHZT-03A-01R HS0825 run	sequencing assay	EFO	98	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.0					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS0825.bam	SRR457636	@dbgap@:reads/SRP011998/SRS189984/SRX060106/SRR457636/SRR457636.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-VariantCall:01	HS0825_7_lanes_dupsFlagged.bam.varFilter.Scored.ge1.anno.maf.txt	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKKCA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKKCA-03A-01R	RNA	EFO	SRS189986	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKKCA-03A-01R HS1584 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS1584	SRX060125	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PAKKCA-03A-01R HS1584 run	sequencing assay	EFO	145	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.5.0					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS1584.bam	SRR457655	@dbgap@:reads/SRP011998/SRS189986/SRX060125/SRR457655/SRR457655.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS1584.exon.quantification.txt	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKKCA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKKCA-03A-01R	RNA	EFO	SRS189986	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKKCA-03A-01R HS1584 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS1584	SRX060125	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PAKKCA-03A-01R HS1584 run	sequencing assay	EFO	145	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.5.0					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS1584.bam	SRR457655	@dbgap@:reads/SRP011998/SRS189986/SRX060125/SRR457655/SRR457655.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS1584.gene.quantification.txt	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKKCA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKKCA-03A-01R	RNA	EFO	SRS189986	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKKCA-03A-01R HS1584 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS1584	SRX060125	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PAKKCA-03A-01R HS1584 run	sequencing assay	EFO	145	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.5.0					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS1584.bam	SRR457655	@dbgap@:reads/SRP011998/SRS189986/SRX060125/SRR457655/SRR457655.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS1584.spljxn.quantification.txt	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKKCA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKKCA-03A-01R	RNA	EFO	SRS189986	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKKCA-03A-01R HS1584 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS1584	SRX060125	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PAKKCA-03A-01R HS1584 run	sequencing assay	EFO	145	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.5.0					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS1584.bam	SRR457655	@dbgap@:reads/SRP011998/SRS189986/SRX060125/SRR457655/SRR457655.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-VariantCall:01	HS1584_4_lanes_dupsFlagged.bam.varFilter.Scored.ge1.anno.maf.txt	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKKXB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKKXB-03A-01R	RNA	EFO	SRS189987	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKKXB-03A-01R HS1533 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS1533	SRX060112	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PAKKXB-03A-01R HS1533 run	sequencing assay	EFO	139	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.3.2					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS1533.bam	SRR457642	@dbgap@:reads/SRP011998/SRS189987/SRX060112/SRR457642/SRR457642.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS1533.exon.quantification.txt	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKKXB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKKXB-03A-01R	RNA	EFO	SRS189987	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKKXB-03A-01R HS1533 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS1533	SRX060112	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PAKKXB-03A-01R HS1533 run	sequencing assay	EFO	139	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.3.2					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS1533.bam	SRR457642	@dbgap@:reads/SRP011998/SRS189987/SRX060112/SRR457642/SRR457642.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS1533.gene.quantification.txt	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKKXB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKKXB-03A-01R	RNA	EFO	SRS189987	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKKXB-03A-01R HS1533 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS1533	SRX060112	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PAKKXB-03A-01R HS1533 run	sequencing assay	EFO	139	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.3.2					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS1533.bam	SRR457642	@dbgap@:reads/SRP011998/SRS189987/SRX060112/SRR457642/SRR457642.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS1533.spljxn.quantification.txt	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKKXB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKKXB-03A-01R	RNA	EFO	SRS189987	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKKXB-03A-01R HS1533 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS1533	SRX060112	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PAKKXB-03A-01R HS1533 run	sequencing assay	EFO	139	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.3.2					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS1533.bam	SRR457642	@dbgap@:reads/SRP011998/SRS189987/SRX060112/SRR457642/SRR457642.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-VariantCall:01	HS1533_5_lanes_dupsFlagged.bam.varFilter.Scored.ge1.anno.maf.txt	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKTAL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKTAL-03A-01R	RNA	EFO	SRS189989	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKTAL-03A-01R HS0897 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS0897	SRX060108	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAII:01	BCCA		TARGET-10-PAKTAL-03A-01R HS0897 run	sequencing assay	EFO	97	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.0					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS0897.bam	SRR457638	@dbgap@:reads/SRP011998/SRS189989/SRX060108/SRR457638/SRR457638.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS0897.exon.quantification.txt	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKTAL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKTAL-03A-01R	RNA	EFO	SRS189989	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKTAL-03A-01R HS0897 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS0897	SRX060108	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAII:01	BCCA		TARGET-10-PAKTAL-03A-01R HS0897 run	sequencing assay	EFO	97	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.0					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS0897.bam	SRR457638	@dbgap@:reads/SRP011998/SRS189989/SRX060108/SRR457638/SRR457638.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS0897.gene.quantification.txt	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKTAL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKTAL-03A-01R	RNA	EFO	SRS189989	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKTAL-03A-01R HS0897 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS0897	SRX060108	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAII:01	BCCA		TARGET-10-PAKTAL-03A-01R HS0897 run	sequencing assay	EFO	97	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.0					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS0897.bam	SRR457638	@dbgap@:reads/SRP011998/SRS189989/SRX060108/SRR457638/SRR457638.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS0897.spljxn.quantification.txt	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKTAL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKTAL-03A-01R	RNA	EFO	SRS189989	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKTAL-03A-01R HS0897 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS0897	SRX060108	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAII:01	BCCA		TARGET-10-PAKTAL-03A-01R HS0897 run	sequencing assay	EFO	97	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.0					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS0897.bam	SRR457638	@dbgap@:reads/SRP011998/SRS189989/SRX060108/SRR457638/SRR457638.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-VariantCall:01	HS0897_7_lanes_dupsFlagged.bam.varFilter.Scored.ge1.anno.maf.txt	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKVKK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKVKK-03A-01R	RNA	EFO	SRS189991	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKVKK-03A-01R HS0894 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS0894	SRX060107	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAII:01	BCCA		TARGET-10-PAKVKK-03A-01R HS0894 run	sequencing assay	EFO	97	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.0					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS0894.bam	SRR457637	@dbgap@:reads/SRP011998/SRS189991/SRX060107/SRR457637/SRR457637.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS0894.exon.quantification.txt	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKVKK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKVKK-03A-01R	RNA	EFO	SRS189991	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKVKK-03A-01R HS0894 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS0894	SRX060107	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAII:01	BCCA		TARGET-10-PAKVKK-03A-01R HS0894 run	sequencing assay	EFO	97	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.0					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS0894.bam	SRR457637	@dbgap@:reads/SRP011998/SRS189991/SRX060107/SRR457637/SRR457637.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS0894.gene.quantification.txt	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKVKK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKVKK-03A-01R	RNA	EFO	SRS189991	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKVKK-03A-01R HS0894 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS0894	SRX060107	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAII:01	BCCA		TARGET-10-PAKVKK-03A-01R HS0894 run	sequencing assay	EFO	97	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.0					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS0894.bam	SRR457637	@dbgap@:reads/SRP011998/SRS189991/SRX060107/SRR457637/SRR457637.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS0894.spljxn.quantification.txt	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKVKK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKVKK-03A-01R	RNA	EFO	SRS189991	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKVKK-03A-01R HS0894 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS0894	SRX060107	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAII:01	BCCA		TARGET-10-PAKVKK-03A-01R HS0894 run	sequencing assay	EFO	97	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.0					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS0894.bam	SRR457637	@dbgap@:reads/SRP011998/SRS189991/SRX060107/SRR457637/SRR457637.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-VariantCall:01	HS0894_7_lanes_dupsFlagged.bam.varFilter.Scored.ge1.anno.maf.txt	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKYEP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKYEP-03A-01R	RNA	EFO	SRS189993	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKYEP-03A-01R HS1534 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS1534	SRX060113	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PAKYEP-03A-01R HS1534 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.3.2					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS1534.bam	SRR457643	@dbgap@:reads/SRP011998/SRS189993/SRX060113/SRR457643/SRR457643.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS1534.exon.quantification.txt	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKYEP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKYEP-03A-01R	RNA	EFO	SRS189993	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKYEP-03A-01R HS1534 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS1534	SRX060113	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PAKYEP-03A-01R HS1534 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.3.2					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS1534.bam	SRR457643	@dbgap@:reads/SRP011998/SRS189993/SRX060113/SRR457643/SRR457643.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS1534.gene.quantification.txt	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKYEP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKYEP-03A-01R	RNA	EFO	SRS189993	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKYEP-03A-01R HS1534 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS1534	SRX060113	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PAKYEP-03A-01R HS1534 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.3.2					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS1534.bam	SRR457643	@dbgap@:reads/SRP011998/SRS189993/SRX060113/SRR457643/SRR457643.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS1534.spljxn.quantification.txt	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKYEP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKYEP-03A-01R	RNA	EFO	SRS189993	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKYEP-03A-01R HS1534 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS1534	SRX060113	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PAKYEP-03A-01R HS1534 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.3.2					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS1534.bam	SRR457643	@dbgap@:reads/SRP011998/SRS189993/SRX060113/SRR457643/SRR457643.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-VariantCall:01	HS1534_5_lanes_dupsFlagged.bam.varFilter.Scored.ge1.anno.maf.txt	3
TARGET-10-PALETF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PALETF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALETF-03A-01R	RNA	EFO	SRS189996	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALETF-03A-01R HS1537 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS1537	SRX060116	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PALETF-03A-01R HS1537 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.3.2					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS1537.bam	SRR457646	@dbgap@:reads/SRP011998/SRS189996/SRX060116/SRR457646/SRR457646.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS1537.exon.quantification.txt	3
TARGET-10-PALETF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PALETF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALETF-03A-01R	RNA	EFO	SRS189996	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALETF-03A-01R HS1537 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS1537	SRX060116	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PALETF-03A-01R HS1537 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.3.2					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS1537.bam	SRR457646	@dbgap@:reads/SRP011998/SRS189996/SRX060116/SRR457646/SRR457646.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS1537.gene.quantification.txt	3
TARGET-10-PALETF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PALETF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALETF-03A-01R	RNA	EFO	SRS189996	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALETF-03A-01R HS1537 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS1537	SRX060116	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PALETF-03A-01R HS1537 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.3.2					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS1537.bam	SRR457646	@dbgap@:reads/SRP011998/SRS189996/SRX060116/SRR457646/SRR457646.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS1537.spljxn.quantification.txt	3
TARGET-10-PALETF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PALETF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALETF-03A-01R	RNA	EFO	SRS189996	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALETF-03A-01R HS1537 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS1537	SRX060116	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PALETF-03A-01R HS1537 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.3.2					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS1537.bam	SRR457646	@dbgap@:reads/SRP011998/SRS189996/SRX060116/SRR457646/SRR457646.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-VariantCall:01	HS1537_5_lanes_dupsFlagged.bam.varFilter.Scored.ge1.anno.maf.txt	3
TARGET-10-PALIBN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PALIBN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALIBN-09A-01R	RNA	EFO	SRS270494	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALIBN-09A-01R HS1535 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS1535	SRX060114	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PALIBN-09A-01R HS1535 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.3.2					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS1535.bam	SRR457644	@dbgap@:reads/SRP011998/SRS270494/SRX060114/SRR457644/SRR457644.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS1535.exon.quantification.txt	3
TARGET-10-PALIBN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PALIBN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALIBN-09A-01R	RNA	EFO	SRS270494	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALIBN-09A-01R HS1535 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS1535	SRX060114	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PALIBN-09A-01R HS1535 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.3.2					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS1535.bam	SRR457644	@dbgap@:reads/SRP011998/SRS270494/SRX060114/SRR457644/SRR457644.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS1535.gene.quantification.txt	3
TARGET-10-PALIBN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PALIBN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALIBN-09A-01R	RNA	EFO	SRS270494	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALIBN-09A-01R HS1535 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS1535	SRX060114	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PALIBN-09A-01R HS1535 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.3.2					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS1535.bam	SRR457644	@dbgap@:reads/SRP011998/SRS270494/SRX060114/SRR457644/SRR457644.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS1535.spljxn.quantification.txt	3
TARGET-10-PALIBN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PALIBN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALIBN-09A-01R	RNA	EFO	SRS270494	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALIBN-09A-01R HS1535 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS1535	SRX060114	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PALIBN-09A-01R HS1535 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.3.2					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS1535.bam	SRR457644	@dbgap@:reads/SRP011998/SRS270494/SRX060114/SRR457644/SRR457644.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-VariantCall:01	HS1535_4_lanes_dupsFlagged.bam.varFilter.Scored.ge1.anno.maf.txt	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PALJDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALJDL-09A-01R	RNA	EFO	SRS270497	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALJDL-09A-01R HS1536 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS1536	SRX060115	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PALJDL-09A-01R HS1536 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.3.2					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS1536.bam	SRR457645	@dbgap@:reads/SRP011998/SRS270497/SRX060115/SRR457645/SRR457645.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS1536.exon.quantification.txt	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PALJDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALJDL-09A-01R	RNA	EFO	SRS270497	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALJDL-09A-01R HS1536 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS1536	SRX060115	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PALJDL-09A-01R HS1536 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.3.2					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS1536.bam	SRR457645	@dbgap@:reads/SRP011998/SRS270497/SRX060115/SRR457645/SRR457645.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS1536.gene.quantification.txt	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PALJDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALJDL-09A-01R	RNA	EFO	SRS270497	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALJDL-09A-01R HS1536 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS1536	SRX060115	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PALJDL-09A-01R HS1536 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.3.2					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS1536.bam	SRR457645	@dbgap@:reads/SRP011998/SRS270497/SRX060115/SRR457645/SRR457645.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS1536.spljxn.quantification.txt	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PALJDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALJDL-09A-01R	RNA	EFO	SRS270497	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALJDL-09A-01R HS1536 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS1536	SRX060115	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PALJDL-09A-01R HS1536 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.3.2					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS1536.bam	SRR457645	@dbgap@:reads/SRP011998/SRS270497/SRX060115/SRR457645/SRR457645.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-VariantCall:01	HS1536_4_lanes_dupsFlagged.bam.varFilter.Scored.ge1.anno.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAMDRM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMDRM-09A-01R	RNA	EFO	SRS270501	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMDRM-09A-01R HS1576 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS1576	SRX060123	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PAMDRM-09A-01R HS1576 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.5.0					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS1576.bam	SRR457653	@dbgap@:reads/SRP011998/SRS270501/SRX060123/SRR457653/SRR457653.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS1576.exon.quantification.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAMDRM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMDRM-09A-01R	RNA	EFO	SRS270501	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMDRM-09A-01R HS1576 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS1576	SRX060123	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PAMDRM-09A-01R HS1576 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.5.0					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS1576.bam	SRR457653	@dbgap@:reads/SRP011998/SRS270501/SRX060123/SRR457653/SRR457653.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS1576.gene.quantification.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAMDRM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMDRM-09A-01R	RNA	EFO	SRS270501	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMDRM-09A-01R HS1576 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS1576	SRX060123	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PAMDRM-09A-01R HS1576 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.5.0					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS1576.bam	SRR457653	@dbgap@:reads/SRP011998/SRS270501/SRX060123/SRR457653/SRR457653.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-Expression:01	HS1576.spljxn.quantification.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAMDRM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMDRM-09A-01R	RNA	EFO	SRS270501	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMDRM-09A-01R HS1576 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	HS1576	SRX060123	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PAMDRM-09A-01R HS1576 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Bustard 1.5.0					bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	HS1576.bam	SRR457653	@dbgap@:reads/SRP011998/SRS270501/SRX060123/SRR457653/SRR457653.sra	2	HG19	bcgsc.ca:Protocol:mRNAseq-VariantCall:01	HS1576_4_lanes_dupsFlagged.bam.varFilter.Scored.ge1.anno.maf.txt	3
TARGET-10-PANEHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANEHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANEHF-09A-01R	RNA	EFO	SRS352133	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANEHF-09A-01R SJBALL269 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	RANDOM PCR	SJBALL269	SRX171002	stjude.org:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	StJude	2012-06-14	TARGET-10-PANEHF-09A-01R SJBALL269 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.9.35	SJBALL2691..fastq	SRR527440	@dbgap@:reads/SRP011998/SRS352133/SRX171002/SRR527440/SRR527440.sra	1									
TARGET-10-PANNGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANNGL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANNGL-09A-01R	RNA	EFO	SRS352131	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANNGL-09A-01R SJBALL265 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	RANDOM PCR	SJBALL265	SRX171000	stjude.org:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	StJude	2012-06-14	TARGET-10-PANNGL-09A-01R SJBALL265 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.9.35	SJBALL2651..fastq	SRR527438	@dbgap@:reads/SRP011998/SRS352131/SRX171000/SRR527438/SRR527438.sra	1									
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSFD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	stjude.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSFD-09A-01R	RNA	EFO	SRS352132	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSFD-09A-01R SJBALL266 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	RANDOM PCR	SJBALL266	SRX171001	stjude.org:Protocol:mRNAseq-Sequence-Illumina-GAIIx:01	StJude	2012-06-14	TARGET-10-PANSFD-09A-01R SJBALL266 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.9.35	SJBALL2661..fastq	SRR527439	@dbgap@:reads/SRP011998/SRS352132/SRX171001/SRR527439/SRR527439.sra	1									
