Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	1	3208470	245880329	128487	4e-04
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	2	474222	242124735	130760	0.0029
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	3	526235	158373699	85499	-0.0012
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	3	158373796	158378158	2	-1.957
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	3	158380828	168642985	4773	0.0045
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	3	168650691	168650872	3	-1.2764
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	3	168654587	199023074	15657	-0.0031
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	4	1043934	14078015	7907	-4e-04
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	4	14079201	14079425	3	-1.4876
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	4	14081732	101492820	47302	-0.0011
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	4	101493313	101496733	2	-2.8212
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	4	101497674	113261138	6606	9e-04
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	4	113265026	113270558	7	-1.3226
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	4	113274524	127599787	8154	-0.0032
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	4	127602836	127608505	2	-2.0504
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	4	127609000	151884242	12656	-0.003
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	4	151884310	151941679	21	0.6707
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	4	151941817	151958532	11	0.2621
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	4	151958584	152298231	122	0.6587
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	4	152298749	180360262	15444	5e-04
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	4	180360706	180366105	2	-1.6551
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	4	180366867	189836143	4094	-0.0044
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	5	967233	25515780	14595	0.0019
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	5	25515848	25516061	2	-2.3248
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	5	25521575	180293075	85478	-1e-04
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	6	959281	170745844	96049	-0.0013
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	7	671810	158077879	80999	1e-04
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	8	607667	145304484	81190	-0.0012
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	9	779932	140058573	67697	-3e-04
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	10	405240	89859308	52290	0.0028
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	10	89860330	89866235	4	-1.3481
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	10	89868422	109482143	11660	-0.0044
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	10	109482918	109483205	2	-1.6158
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	10	109484849	135075077	16580	7e-04
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	11	446120	133647740	76896	0.0011
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	12	760163	69777772	37989	0.0011
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	12	69785308	69796522	12	0.7725
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	12	69807794	131671419	35600	-0.0015
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	13	18348806	114005560	56377	0.0029
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	14	19571208	105059083	49242	7e-04
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	15	21238778	92506926	39936	0.0019
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	15	92511344	92512955	2	-1.9342
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	15	92513877	99701830	4380	0.0083
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	16	593460	87907437	40662	0.0016
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	17	933971	37775501	16465	8e-04
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	17	37780187	37780590	2	-1.6194
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	17	37780908	78510305	20360	0.0012
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	18	319586	5071917	2363	-0.0062
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	18	5072499	5072533	2	-1.7066
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	18	5072569	75210228	40139	-0.0026
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	19	235018	63570038	23856	0.0018
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	20	403764	61690281	37094	-0.0011
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	21	14269492	46503202	20502	0.0026
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	22	15803930	47717016	16850	2e-04
LEGIT_p_TCGA_300_301_302_N_GenomeWideSNP_6_B06_1344340	X	3167107	154558783	63575	1e-04
